Citrus Sinensis ID: 042116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPPCPTSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccEEEEEEccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHEEEcccccEEEcccccccEccccccEEEEEEEEccccccHHHHHcccccccccHHHHHEEEEHHHcccccccccccccccHHHHHHHHHHHHcccHHHHccHHHcccccHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mkgkgnreiegergcevkgkrkqFGAVVRRREnkekesnlglllilpqpscnvylhneceapiihcdikphnilmdEFWTAKIsdfglakllmpdqtrtftlirgtrgymapewskntpismkaNVFNYGVVLLEIVCCrrnmeidpskpeeIVFINLTYKcfidrefdklvhgeevnKKTLENMIKSVVMMLEgitdisippcptsl
Flexible Loop (DISEMBL)
mkgkgnreiegergcevkgkrkqfgavvrrrenkekesnlgllLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEidpskpeeiVFINLTYKCFIDREFDklvhgeevnkktLENMIKSVVMMLegitdisippcptsl
Low Complexity Region (SEG)
MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPPCPTSL
Disordered region (IsUnstruct)
***************************************LGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISI*******
Disordered Region (DISOPRED)
*************GCEV*G*R**************KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRR************VFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPPCP***
Disordered Region (DISEMBL)
************************GAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPPCPTSL
Disordered Region (DISPRO)
*****NREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME****KPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDIS********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPPCPTSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q39202	832	G-type lectin S-receptor-	yes	no	0.721	0.180	0.442	5e-37
Q9XID3	829	G-type lectin S-receptor-	no	no	0.716	0.179	0.409	7e-31
Q8RWZ5	821	G-type lectin S-receptor-	no	no	0.735	0.186	0.395	7e-31
Q9FLV4	872	G-type lectin S-receptor-	no	no	0.745	0.177	0.389	8e-30
O64477	828	G-type lectin S-receptor-	no	no	0.735	0.184	0.393	3e-28
O65238	872	G-type lectin S-receptor-	no	no	0.427	0.102	0.573	3e-26
Q39203	797	G-type lectin S-receptor-	no	no	0.682	0.178	0.384	6e-25
Q94C25	452	Probable receptor-like pr	no	no	0.432	0.199	0.522	2e-24
P17801	817	Putative receptor protein	N/A	no	0.442	0.112	0.505	1e-21
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.629	0.205	0.374	2e-20

>sp|Q39202|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 24/174 (13%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH EC   IIHCDIKP NIL+DE++T +ISDFGLAKLL+ +QT T T IRGT+GY+AP
Sbjct: 643 LYLHEECSEQIIHCDIKPQNILLDEYYTPRISDFGLAKLLLMNQTYTLTNIRGTKGYVAP 702

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW +N+PI+ K +V++YGV+LLEIVCC++ ++++    + ++ IN  Y CF     + L 
Sbjct: 703 EWFRNSPITSKVDVYSYGVMLLEIVCCKKAVDLE----DNVILINWAYDCFRQGRLEDLT 758

Query: 173 H--GEEVNK-KTLENMIK-----------------SVVMMLEGITDISIPPCPT 206
               E +N  +T+E  +K                 +V  MLEG+  +  PP P+
Sbjct: 759 EDDSEAMNDMETVERYVKIAIWCIQEEHGMRPNMRNVTQMLEGVIQVFDPPNPS 812

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1

 Score =  133 bits (335), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 104/183 (56%), Gaps = 34/183 (18%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP 112
           YLH EC   I+HCDIKP NIL+D+ + AK+SDFGLAKLL P   R   + +RGTRGY+AP
Sbjct: 595 YLHEECRDCIVHCDIKPENILVDDNFAAKVSDFGLAKLLNPKDNRYNMSSVRGTRGYLAP 654

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDK-- 170
           EW  N PI+ K++V++YG+VLLE+V  +RN ++   K     F    Y+     EF+K  
Sbjct: 655 EWLANLPITSKSDVYSYGMVLLELVSGKRNFDVS-EKTNHKKFSIWAYE-----EFEKGN 708

Query: 171 --------LVHGEEVNKKTLENMIKS-----------------VVMMLEGITDISIPPCP 205
                   L   + V+ + +  M+K+                 VV MLEGIT+I  P CP
Sbjct: 709 TKAILDTRLSEDQTVDMEQVMRMVKTSFWCIQEQPLQRPTMGKVVQMLEGITEIKNPLCP 768

Query: 206 TSL 208
            ++
Sbjct: 769 KTI 771

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1

 Score =  133 bits (335), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 109/177 (61%), Gaps = 24/177 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH +C+A I+HCDIKP NIL+D+ + AK+SDFGLAKL+  +Q+  FT +RGTRGY+APE
Sbjct: 605 YLHEDCDARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPE 664

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSK-PEEIVFINLTYKCFIDREFDKLV 172
           W  N  IS K++V++YG+VLLE++  R+N   DPS+  E+  F +  +K   + +   +V
Sbjct: 665 WITNYAISEKSDVYSYGMVLLELIGGRKNY--DPSETSEKCHFPSFAFKKMEEGKLMDIV 722

Query: 173 HGE----EVNKKTLENMIKS-----------------VVMMLEGITDISIPPCPTSL 208
            G+    +V  + ++  +K+                 VV MLEG+  +  PP  +++
Sbjct: 723 DGKMKNVDVTDERVQRAMKTALWCIQEDMQTRPSMSKVVQMLEGVFPVVQPPSSSTM 779

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 22/177 (12%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            Y H +C   IIHCDIKP NIL+D+ +  K+SDFGLAK++  + +   T+IRGTRGY+AP
Sbjct: 642 AYFHEQCRNRIIHCDIKPENILLDDNFCPKVSDFGLAKMMGREHSHVVTMIRGTRGYLAP 701

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCF--------I 164
           EW  N PI++KA+V++YG++LLEIV  RRN+++     E+  +    YK          +
Sbjct: 702 EWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMS-YDAEDFFYPGWAYKELTNGTSLKAV 760

Query: 165 DREFDKLVHGEEVNKK------------TLENMIKSVVMMLEGITD-ISIPPCPTSL 208
           D+    +   EEV K             ++   +  VV +LEG +D I++PP P ++
Sbjct: 761 DKRLQGVAEEEEVVKALKVAFWCIQDEVSMRPSMGEVVKLLEGTSDEINLPPMPQTI 817

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/178 (39%), Positives = 100/178 (56%), Gaps = 25/178 (14%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+EC   IIHCDIKP NIL+D  +  K++DFGLAKL+  D +R  T +RGTRGY+APE
Sbjct: 606 YLHDECRDCIIHCDIKPENILLDSQFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPE 665

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFIN------LTYKCFIDRE 167
           W     I+ KA+V++YG++L E+V  RRN E   S+ E++ F        LT    I   
Sbjct: 666 WISGVAITAKADVYSYGMMLFELVSGRRNTE--QSENEKVRFFPSWAATILTKDGDIRSL 723

Query: 168 FDKLVHGEEVNKKTLENMIK-----------------SVVMMLEGITDISIPPCPTSL 208
            D  + G+ V+ + +    K                  VV +LEG+ +++ PP P S+
Sbjct: 724 VDPRLEGDAVDIEEVTRACKVACWCIQDEESHRPAMSQVVQILEGVLEVNPPPFPRSI 781

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2

 Score =  118 bits (295), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 69/89 (77%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+ C+  IIHCD+KP NIL+ + +  KISDFGL+KLL  +++  FT +RGTRGY+APE
Sbjct: 626 YLHSGCDQKIIHCDVKPENILLHDHFQPKISDFGLSKLLNQEESSLFTTMRGTRGYLAPE 685

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRN 142
           W  N  IS KA+V++YG+VLLE+V  R+N
Sbjct: 686 WITNAAISEKADVYSYGMVLLELVSGRKN 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 93/169 (55%), Gaps = 27/169 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH  C   IIHCDIKP NIL+D  + AK+SDFGLAKLL  D +R    +RGT GY+APE
Sbjct: 572 YLHEGCRDCIIHCDIKPENILLDSDYNAKVSDFGLAKLLGRDFSRVLATMRGTWGYVAPE 631

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP-------SKPEEIVFINLTYKCFIDR 166
           W    PI+ KA+V+++G+ LLE++  RRN+ ++        ++PE+  F     +  I  
Sbjct: 632 WISGLPITTKADVYSFGMTLLELIGGRRNVIVNSDTLGEKETEPEKWFFPPWAAREIIQG 691

Query: 167 EFDKLV--------HGEEVNK------------KTLENMIKSVVMMLEG 195
             D +V        + EEV +            + +   + +VV MLEG
Sbjct: 692 NVDSVVDSRLNGEYNTEEVTRMATVAIWCIQDNEEIRPAMGTVVKMLEG 740

Serine/threonine-protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94C25|Y5005_ARATH Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 70/90 (77%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++C + I+H D+KP NIL+DE + A ++DFGL+KL+  D++R  T IRGTRGY+APE
Sbjct: 223 YLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARDESRVLTDIRGTRGYLAPE 282

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNM 143
           W     IS K++V++YG+VLLE++  RR++
Sbjct: 283 WLLEHGISEKSDVYSYGIVLLEMIGGRRSI 312

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2

 Score =  102 bits (255), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           YLH+EC   +IHCD+KP NIL+D+ +  KI+DFGL KLL     T+  + +RGT GY+AP
Sbjct: 645 YLHHECLEWVIHCDVKPENILLDQAFEPKITDFGLVKLLNRGGSTQNVSHVRGTLGYIAP 704

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           EW  + PI+ K +V++YGVVLLE++   R  E+
Sbjct: 705 EWVSSLPITAKVDVYSYGVVLLELLTGTRVSEL 737

Probable receptor. Interaction with a ligand in the extracellular domain triggers the protein kinase activity of the cytoplasmic domain.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 79/131 (60%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           VYLH +C+  IIH D+K  NIL+D++  A + DFGLAKLL    +   T +RGT G++AP
Sbjct: 421 VYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAP 480

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           E+      S K +VF +G++LLE+V  +R  E   +  ++ V ++   K   +++ + LV
Sbjct: 481 EYLSTGQSSEKTDVFGFGILLLELVTGQRAFEFGKAANQKGVMLDWVKKIHQEKKLELLV 540

Query: 173 HGEEVNKKTLE 183
             E + KK+ +
Sbjct: 541 DKELLKKKSYD 551

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
225431565	791	PREDICTED: G-type lectin S-receptor-like	0.745	0.195	0.662	1e-63
359477052	767	PREDICTED: G-type lectin S-receptor-like	0.745	0.202	0.656	2e-63
147867430	930	hypothetical protein VITISV_038238 [Viti	0.745	0.166	0.662	2e-63
359477046	798	PREDICTED: G-type lectin S-receptor-like	0.745	0.194	0.639	5e-60
357478041	854	Receptor like kinase [Medicago truncatul	0.745	0.181	0.622	8e-60
224116044	313	predicted protein [Populus trichocarpa]	0.745	0.495	0.633	2e-59
224105693	313	predicted protein [Populus trichocarpa]	0.745	0.495	0.627	5e-59
357478045	928	Kinase-like protein [Medicago truncatula	0.740	0.165	0.602	2e-57
356546166	810	PREDICTED: G-type lectin S-receptor-like	0.865	0.222	0.566	1e-56
224093336	755	predicted protein [Populus trichocarpa]	0.745	0.205	0.612	2e-55

>gi|225431565|ref|XP_002276127.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 138/172 (80%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECEAPIIHCDIKP NILMD+FWTAKISDFGLAKLLMPDQTRTFT +RGTRGY+AP
Sbjct: 617 LYLHEECEAPIIHCDIKPQNILMDDFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAP 676

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW +N PIS+KA+V++YG+VLLE+VCCRRN+E++ SKPEEIV  N  YKCF+  E  KL+
Sbjct: 677 EWQQNIPISVKADVYSYGIVLLELVCCRRNLEVNVSKPEEIVLSNWAYKCFVAGELYKLL 736

Query: 173 HGEEVNKKTLENM-----------------IKSVVMMLEGITDISIPPCPTS 207
            GEEV +K+LE M                 IKS+V+MLEGIT+I++PPCPT+
Sbjct: 737 GGEEVERKSLEEMVKLGLWCIQDEPALRPSIKSIVLMLEGITEIAVPPCPTT 788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477052|ref|XP_002276297.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 138/172 (80%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECEAPIIHCDIKP NILMD+FWTAKISDFGLAKLLMPDQTRTFT +RGTRGY+AP
Sbjct: 593 LYLHEECEAPIIHCDIKPQNILMDDFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAP 652

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW +N PIS+KA+V++YG+VLLE+VCCRRN+E++ S+PEEIV  N  YKCF+  E  KL+
Sbjct: 653 EWQQNIPISVKADVYSYGIVLLELVCCRRNLEVNVSEPEEIVLSNWAYKCFVAGELHKLL 712

Query: 173 HGEEVNKKTLENM-----------------IKSVVMMLEGITDISIPPCPTS 207
            GEEV +K+LE M                 IKS+V+MLEGIT+I++PPCPT+
Sbjct: 713 GGEEVERKSLEQMVKLGLWCIQDEPALRPSIKSIVLMLEGITEIAVPPCPTT 764

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867430|emb|CAN78998.1| hypothetical protein VITISV_038238 [Vitis vinifera]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 138/172 (80%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECEAPIIHCDIKP NILMD+FWTAKISDFGLAKLLMPDQTRTFT +RGTRGY+AP
Sbjct: 756 LYLHEECEAPIIHCDIKPQNILMDDFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAP 815

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW +N PIS+KA+V++YG+VLLE+VCCRRN+E++ SKPEEIV  N  YKCF+  E  KL+
Sbjct: 816 EWQQNIPISVKADVYSYGIVLLELVCCRRNLEVNVSKPEEIVLSNWAYKCFVAGELYKLL 875

Query: 173 HGEEVNKKTLENM-----------------IKSVVMMLEGITDISIPPCPTS 207
            GEEV +K+LE M                 IKS+V+MLEGIT+I++PPCPT+
Sbjct: 876 GGEEVERKSLEEMVKLGLWCIQDEPALRPSIKSIVLMLEGITEIAVPPCPTT 927

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477046|ref|XP_002275786.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 131/172 (76%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECE PIIHCDIKP NILMDEF  AKISDFGLAKLLMPDQTRTFT +RGTRGY+AP
Sbjct: 624 LYLHEECETPIIHCDIKPQNILMDEFLNAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAP 683

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW +NTPIS+KA++++YG+VLLEIVCCR+NME+    PEEI+  N  Y+C + RE DKLV
Sbjct: 684 EWQRNTPISVKADIYSYGIVLLEIVCCRKNMEVQVKNPEEIILSNWVYQCMVSRELDKLV 743

Query: 173 HGEEVNKKTLENMI-----------------KSVVMMLEGITDISIPPCPTS 207
             E  +KKTLE M+                 KSVV++LEGITDI +PPCPT+
Sbjct: 744 ADEVADKKTLERMVKVGLWCIQDEPALRPSMKSVVLILEGITDIVVPPCPTT 795

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478041|ref|XP_003609306.1| Receptor like kinase [Medicago truncatula] gi|357478087|ref|XP_003609329.1| Receptor like kinase [Medicago truncatula] gi|355510361|gb|AES91503.1| Receptor like kinase [Medicago truncatula] gi|355510384|gb|AES91526.1| Receptor like kinase [Medicago truncatula]

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 107/172 (62%), Positives = 134/172 (77%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH EC+APIIHCD+KP NILMD+FWTAKISDFGLAKLLMPDQTRTFT++RGTRGYMAP
Sbjct: 636 LYLHEECDAPIIHCDLKPQNILMDKFWTAKISDFGLAKLLMPDQTRTFTMVRGTRGYMAP 695

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW+KN  IS+K +V++YG+VLLEI+CCRRN++++  +PEEI+    TYKCFI  + +KLV
Sbjct: 696 EWNKNVAISVKTDVYSYGIVLLEILCCRRNLDVNVLEPEEILLAGWTYKCFIAGDVNKLV 755

Query: 173 HGEEVNKKTLENMI-----------------KSVVMMLEGITDISIPPCPTS 207
             E ++K  +ENM+                 K VV+MLEGITDI+IPPCP S
Sbjct: 756 PSEAIDKNVMENMVKVALWCIQDDPFLRPTMKGVVLMLEGITDIAIPPCPNS 807

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116044|ref|XP_002332034.1| predicted protein [Populus trichocarpa] gi|222875259|gb|EEF12390.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 134/172 (77%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECEAPIIHCDIKP NILMD+FW AKISDFGLAKLL+PDQTRTFT++RGTRGY+AP
Sbjct: 139 LYLHEECEAPIIHCDIKPQNILMDDFWNAKISDFGLAKLLVPDQTRTFTIVRGTRGYLAP 198

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW KNTPIS+KA+V++YGV+LLEIV CRRN+E + S+PEE+   N  Y+  ++RE DKL 
Sbjct: 199 EWHKNTPISVKADVYSYGVMLLEIVFCRRNIETNVSRPEEVQLSNWAYELLVERELDKLD 258

Query: 173 HGEEVNKKTLENMI-----------------KSVVMMLEGITDISIPPCPTS 207
            GE+V+ + LE M+                 KSVV+MLEGITD+S+PP PTS
Sbjct: 259 LGEDVDLQNLEKMVMVGIWCIQDEPGIRPSMKSVVLMLEGITDVSVPPHPTS 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105693|ref|XP_002333784.1| predicted protein [Populus trichocarpa] gi|222838485|gb|EEE76850.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 133/172 (77%), Gaps = 17/172 (9%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECEAPIIHCDIKP NILMD+FW AKISDFGLAKLL+PDQTRTFT++RGTRGY+AP
Sbjct: 139 LYLHEECEAPIIHCDIKPQNILMDDFWNAKISDFGLAKLLVPDQTRTFTMVRGTRGYLAP 198

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           EW KNTPIS+KA+V++YGV+LLEIV CRRN+E + S+PEE+   N  Y+  ++RE DKL 
Sbjct: 199 EWHKNTPISVKADVYSYGVMLLEIVFCRRNIETNVSRPEEVQLSNWAYELLVERELDKLD 258

Query: 173 HGEEVNKKTLENMI-----------------KSVVMMLEGITDISIPPCPTS 207
            GE+V+ +  E M+                 KSVV+MLEGITD+S+PP PTS
Sbjct: 259 LGEDVDLQNFEKMVMVGIWCIQDEPGIRPSMKSVVLMLEGITDVSVPPHPTS 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478045|ref|XP_003609308.1| Kinase-like protein [Medicago truncatula] gi|357478091|ref|XP_003609331.1| Kinase-like protein [Medicago truncatula] gi|355510363|gb|AES91505.1| Kinase-like protein [Medicago truncatula] gi|355510386|gb|AES91528.1| Kinase-like protein [Medicago truncatula]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 129/171 (75%), Gaps = 17/171 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH ECEAPIIHCDIKP NILMDEFWTAKISDFGLAKLLMPDQTRTFT++RGTRGYMAPE
Sbjct: 637 YLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTVVRGTRGYMAPE 696

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH 173
           W+ N PIS+KA+V++YG++L EI+CCRRN++++  +PEEI+     YKC +  + + LV 
Sbjct: 697 WNMNVPISLKADVYSYGIMLFEILCCRRNLDVNVLEPEEILLSGWAYKCLVAGQVNNLVP 756

Query: 174 GEEVNKKTLENMI-----------------KSVVMMLEGITDISIPPCPTS 207
            E ++   +ENM+                 K VV+MLEG+TDI+IPPCP S
Sbjct: 757 WEVIDNNVMENMVKVALWCIQDDPFLRPTMKGVVLMLEGVTDIAIPPCPDS 807

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546166|ref|XP_003541502.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 141/203 (69%), Gaps = 23/203 (11%)

Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKI 83
           FGA  +RR   ++   + L +        +YLH ECEAPIIHCDIKP NILMDEFWTAKI
Sbjct: 609 FGAQSQRRPGWDERVRIALEI----AKGILYLHEECEAPIIHCDIKPQNILMDEFWTAKI 664

Query: 84  SDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIVCCRRN 142
           SDFGLAKLLMPDQTRT T  RGTRGY+APEW K N PIS+K +V++YG+VLLEI+CCRRN
Sbjct: 665 SDFGLAKLLMPDQTRTITGARGTRGYVAPEWDKLNIPISVKVDVYSYGIVLLEILCCRRN 724

Query: 143 MEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEV-NKKTLENMI--------------- 186
           +E+  S+PE  +  N  YKCF+  + +KL   E V NK ++EN++               
Sbjct: 725 IEVHVSEPEAALLSNWAYKCFVSGQLNKLFLWESVDNKTSVENIVKVALWCIQDEPFLRP 784

Query: 187 --KSVVMMLEGITDISIPPCPTS 207
             KSVV+MLEGITDI+IPPCP S
Sbjct: 785 TMKSVVLMLEGITDIAIPPCPNS 807

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093336|ref|XP_002309887.1| predicted protein [Populus trichocarpa] gi|222852790|gb|EEE90337.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 132/173 (76%), Gaps = 18/173 (10%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH ECEAPI+HCDIKP NILMD+FWTAKISDFGLAKLL+PDQTRT T+ RGT GYMAP
Sbjct: 580 LYLHEECEAPIMHCDIKPQNILMDDFWTAKISDFGLAKLLVPDQTRTLTIARGTPGYMAP 639

Query: 113 EWSK-NTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKL 171
           EW+K +TP S+K +V++YGVVLLEIV CRRNM+I+ SKPEE++     Y+  + RE D+L
Sbjct: 640 EWTKISTPTSVKVDVYSYGVVLLEIVFCRRNMKINVSKPEEVLLSKWAYELLVARELDRL 699

Query: 172 VHGEEVNKKTLENMI-----------------KSVVMMLEGITDISIPPCPTS 207
             GE+V+++ LE M+                 K+VVMMLEGITD+S+PP PTS
Sbjct: 700 DLGEDVDRQKLEKMVMIGIWCIQDEPGLRPSMKTVVMMLEGITDVSVPPHPTS 752

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2116525	821	SD2-5 "S-domain-2 5" [Arabidop	0.634	0.160	0.451	7.8e-31
TAIR|locus:2026155	829	AT1G34300 [Arabidopsis thalian	0.442	0.110	0.569	9.5e-29
TAIR|locus:2059103	828	AT2G19130 [Arabidopsis thalian	0.480	0.120	0.529	2.6e-26
TAIR|locus:2147635	452	AT5G20050 [Arabidopsis thalian	0.673	0.309	0.404	4.4e-24
TAIR|locus:2182603	872	AT5G35370 [Arabidopsis thalian	0.427	0.102	0.573	1.1e-23
TAIR|locus:2162212	681	AT5G55830 [Arabidopsis thalian	0.663	0.202	0.338	3.1e-20
TAIR|locus:2083986	715	AT3G53380 [Arabidopsis thalian	0.548	0.159	0.421	6.3e-20
TAIR|locus:2093591	467	GPK1 "glyoxysomal protein kina	0.663	0.295	0.382	1.2e-19
TAIR|locus:2026846	710	PERK13 "proline-rich extensin-	0.634	0.185	0.382	2.6e-19
TAIR|locus:2033577	425	AT1G70740 [Arabidopsis thalian	0.528	0.258	0.414	2.9e-19

TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 7.8e-31, Sum P(3) = 7.8e-31
 Identities = 61/135 (45%), Positives = 92/135 (68%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH +C+A I+HCDIKP NIL+D+ + AK+SDFGLAKL+  +Q+  FT +RGTRGY+APE
Sbjct:   605 YLHEDCDARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPE 664

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKP-EEIVFINLTYKCFIDREFDKLV 172
             W  N  IS K++V++YG+VLLE++  R+N   DPS+  E+  F +  +K   + +   +V
Sbjct:   665 WITNYAISEKSDVYSYGMVLLELIGGRKNY--DPSETSEKCHFPSFAFKKMEEGKLMDIV 722

Query:   173 HGEEVNKKTLENMIK 187
              G+  N    +  ++
Sbjct:   723 DGKMKNVDVTDERVQ 737

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

TAIR|locus:2026155 AT1G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP 112
             YLH EC   I+HCDIKP NIL+D+ + AK+SDFGLAKLL P   R   + +RGTRGY+AP
Sbjct:   595 YLHEECRDCIVHCDIKPENILVDDNFAAKVSDFGLAKLLNPKDNRYNMSSVRGTRGYLAP 654

Query:   113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
             EW  N PI+ K++V++YG+VLLE+V  +RN ++
Sbjct:   655 EWLANLPITSKSDVYSYGMVLLELVSGKRNFDV 687

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0048544 "recognition of pollen" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
 Identities = 54/102 (52%), Positives = 73/102 (71%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH+EC   IIHCDIKP NIL+D  +  K++DFGLAKL+  D +R  T +RGTRGY+APE
Sbjct:   606 YLHDECRDCIIHCDIKPENILLDSQFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPE 665

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
             W     I+ KA+V++YG++L E+V  RRN E   S+ E++ F
Sbjct:   666 WISGVAITAKADVYSYGMMLFELVSGRRNTE--QSENEKVRF 705

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

TAIR|locus:2147635 AT5G20050 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 4.4e-24, P = 4.4e-24
 Identities = 59/146 (40%), Positives = 97/146 (66%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH++C + I+H D+KP NIL+DE + A ++DFGL+KL+  D++R  T IRGTRGY+APE
Sbjct:   223 YLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARDESRVLTDIRGTRGYLAPE 282

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRNM---EIDPSKPEEI-VFINLTYKCFIDREFD 169
             W     IS K++V++YG+VLLE++  RR++   E+  +K +++  F  +  +   +R+  
Sbjct:   283 WLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKKKLEYFPRIVNQKMRERKIM 342

Query:   170 KLVHGE--EVNKKTLENMIKSVVMML 193
             ++V     EVN+   E ++K V + L
Sbjct:   343 EIVDQRLIEVNEVDEEEVMKLVCVAL 368

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 51/89 (57%), Positives = 69/89 (77%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH+ C+  IIHCD+KP NIL+ + +  KISDFGL+KLL  +++  FT +RGTRGY+APE
Sbjct:   626 YLHSGCDQKIIHCDVKPENILLHDHFQPKISDFGLSKLLNQEESSLFTTMRGTRGYLAPE 685

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRN 142
             W  N  IS KA+V++YG+VLLE+V  R+N
Sbjct:   686 WITNAAISEKADVYSYGMVLLELVSGRKN 714

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

TAIR|locus:2162212 AT5G55830 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
 Identities = 47/139 (33%), Positives = 84/139 (60%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH+ECE  ++H DIK  NI++D  + A++ DFGLA+L   D++   TL  GT GY+APE
Sbjct:   480 YLHHECEQQVVHRDIKTSNIMLDINFNARLGDFGLARLTEHDKSPVSTLTAGTMGYLAPE 539

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH 173
             + +    + K + F+YGVV+LE+ C RR ++ +P   + +  ++  ++   +    + V 
Sbjct:   540 YLQYGTATEKTDAFSYGVVILEVACGRRPIDKEPESQKTVNLVDWVWRLHSEGRVLEAVD 599

Query:   174 GEEVNKKTLENMIKSVVMM 192
              E +  +  E M+K ++++
Sbjct:   600 -ERLKGEFDEEMMKKLLLV 617

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2083986 AT3G53380 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
 Identities = 48/114 (42%), Positives = 70/114 (61%)

Query:    44 LILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
             ++L   S   YLH ECE  +IH D+K  NI++DE + AK+ DFGLA+ +  D++   T+ 
Sbjct:   477 ILLGVASALAYLHRECENQVIHRDVKSSNIMLDESFNAKLGDFGLARQIEHDKSPEATVA 536

Query:   104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFIN 157
              GT GY+APE+      S K +VF+YG V+LE+V  RR +E D +     V +N
Sbjct:   537 AGTMGYLAPEYLLTGRASEKTDVFSYGAVVLEVVSGRRPIEKDLNVQRHNVGVN 590

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2093591 GPK1 "glyoxysomal protein kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 54/141 (38%), Positives = 87/141 (61%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH   E  ++H DIK  NILMD+ + AK+SDFGLAKLL  D     T + GT GY+APE
Sbjct:   267 YLHEAIEPKVVHRDIKSSNILMDDNFDAKLSDFGLAKLLGADSNYVSTRVMGTFGYVAPE 326

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFID-REFDKLV 172
             ++ +  ++ K++V++YGVVLLE +  R    +D ++P+E V +    K  +  ++F+++V
Sbjct:   327 YANSGLLNEKSDVYSYGVVLLEAITGR--YPVDYARPKEEVHMVEWLKLMVQQKQFEEVV 384

Query:   173 HGEEVNKKTLENMIKSVVMML 193
               E   K T   + ++++  L
Sbjct:   385 DKELEIKPTTSELKRALLTAL 405

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009735 "response to cytokinin stimulus" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2026846 PERK13 "proline-rich extensin-like receptor kinase 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 52/136 (38%), Positives = 84/136 (61%)

Query:    54 YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
             YLH +C   IIH DIK  NIL+D+ + A+++DFGLAKL    QT   T + GT GY+APE
Sbjct:   464 YLHEDCHPKIIHRDIKSANILLDDEFEAQVADFGLAKLNDSTQTHVSTRVMGTFGYLAPE 523

Query:   114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME-IDPSKPEEIV--FINLTYKCFIDREFDK 170
             ++++  ++ +++VF++GVVLLE++  R+ ++   P   E +V     L +K     +F +
Sbjct:   524 YAQSGKLTDRSDVFSFGVVLLELITGRKPVDQYQPLGEESLVEWARPLLHKAIETGDFSE 583

Query:   171 LVHGEEVNKKTLENMI 186
             LV    + K  +EN +
Sbjct:   584 LVD-RRLEKHYVENEV 598

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2033577 AT1G70740 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 46/111 (41%), Positives = 71/111 (63%)

Query:    53 VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
             +YLH +    IIH DIK  NIL+DE W  KI+DFG+A+L   D T   T + GT GYMAP
Sbjct:   173 LYLHEDAPNCIIHRDIKAGNILLDEKWVPKIADFGMARLYQEDVTHVNTRVAGTNGYMAP 232

Query:   113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCF 163
             E+  +  +S+KA+VF++GV++LE+V  ++N       P++ + +   +K +
Sbjct:   233 EYVMHGVLSVKADVFSFGVLVLELVSGQKNSSFSMRHPDQTL-LEWAFKLY 282

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034882001 SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (774 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-21
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-19
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-16
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-15
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-14
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-14
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-13
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-13
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-12
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	7e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	9e-12
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-11
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-11
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-10
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-10
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-10
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-10
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-10
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	3e-10
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	5e-10
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	5e-10
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	5e-10
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	5e-10
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-09
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-09
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-09
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-09
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	2e-09
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-09
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	3e-09
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-09
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	4e-09
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	4e-09
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-09
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	7e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	7e-09
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	7e-09
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-08
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	1e-08
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-08
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-08
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-08
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-08
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	3e-08
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	3e-08
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-08
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-08
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	5e-08
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-08
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	7e-08
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	8e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	8e-08
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	8e-08
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	9e-08
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	9e-08
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	1e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-07
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-07
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	2e-07
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	2e-07
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-07
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-07
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-07
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-07
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	3e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-07
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	3e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-07
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	3e-07
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-07
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	3e-07
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	4e-07
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	4e-07
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	4e-07
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	4e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	5e-07
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	5e-07
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	5e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	5e-07
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	5e-07
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	7e-07
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	8e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	8e-07
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	9e-07
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-06
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-06
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-06
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-06
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-06
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-06
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	1e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	2e-06
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	2e-06
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	2e-06
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	2e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-06
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	2e-06
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	3e-06
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	3e-06
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	3e-06
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	3e-06
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	4e-06
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	4e-06
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	4e-06
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	5e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	5e-06
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	7e-06
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	7e-06
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	8e-06
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	8e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-05
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-05
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	1e-05
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-05
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	2e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-05
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-05
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-05
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-05
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	2e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	2e-05
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-05
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	3e-05
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	3e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	3e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-05
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-05
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	4e-05
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	4e-05
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	4e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	4e-05
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	4e-05
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	5e-05
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	5e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	6e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	6e-05
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	7e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	7e-05
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	7e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-05
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	8e-05
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	8e-05
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	8e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-04
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	1e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	1e-04
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	1e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-04
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	1e-04
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	1e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-04
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	2e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-04
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-04
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	2e-04
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-04
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	2e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	3e-04
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	3e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	3e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	4e-04
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	4e-04
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	4e-04
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	4e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	4e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	4e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	4e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	4e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	5e-04
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	5e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	5e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	5e-04
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	5e-04
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	6e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	6e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	6e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	7e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	7e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	8e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	8e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	8e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	8e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	8e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	8e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	0.001
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.001
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	0.001
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	0.001
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.001
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.001
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.001
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	0.001
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.002
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	0.002
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	0.002
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.002
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	0.003
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	0.003
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.003
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	0.003
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.004
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 86.9 bits (216), Expect = 3e-21
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 13/110 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           YLH+     IIH D+KP NIL+D      K++DFGL+KLL          I GT  YMAP
Sbjct: 107 YLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLL-TSDKSLLKTIVGTPAYMAP 162

Query: 113 E-WSKNTPISMKANVFNYGVVLLEIVCC----RRNMEIDPSK---PEEIV 154
           E        S K+++++ GV+L E+       R+ ++ DP K    +EI+
Sbjct: 163 EVLLGKGYYSEKSDIWSLGVILYELPELKDLIRKMLQKDPEKRPSAKEIL 212

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 84.5 bits (210), Expect = 5e-20
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    I+H D+KP NIL+DE    K++DFGLA+ L P +  T T + GT  YMAPE
Sbjct: 112 YLHSKG---IVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLT-TFV-GTPEYMAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
                      ++++ GV+L E++  +
Sbjct: 167 VLLGKGYGKAVDIWSLGVILYELLTGK 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     IIH D+KP NIL+DE    KI+DFGLAK L+   +   T   GT  YMAPE
Sbjct: 113 YLHSN---GIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSS-LTTFVGTPWYMAPE 168

Query: 114 W-SKNTPISMKANVFNYGVVLLEIVC 138
                     K +V++ GV+L E++ 
Sbjct: 169 VLLGGNGYGPKVDVWSLGVILYELLT 194

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL----MPDQTRTFTLIRGTRGY 109
           YLH+     I+H DIK  NIL+D     K++DFG AK L      + T +   +RGT  +
Sbjct: 116 YLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGS---VRGTPYW 169

Query: 110 MAPEWSKNTPISMKANVFNYGVVLLE 135
           MAPE  +       A++++ G  ++E
Sbjct: 170 MAPEVIRGEEYGRAADIWSLGCTVIE 195

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 70.6 bits (174), Expect = 6e-15
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 14/125 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     II+ D+KP NIL+D     K++DFGLAK L  + +RT T   GT  Y+APE
Sbjct: 108 YLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFC-GTPEYLAPE 163

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC------CRRNMEIDPSKPEEIVFINLTYKCFIDRE 167
                      + ++ GV+L E++            EI     E+I+   L +  F+  E
Sbjct: 164 VLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIY----EKILKDPLRFPEFLSPE 219

Query: 168 FDKLV 172
              L+
Sbjct: 220 ARDLI 224

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      IIH DIKP NIL+      K+ DFG++  L+     TFT   GT  YMAPE
Sbjct: 120 YLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFT---GTSFYMAPE 173

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINL 158
             +  P S+ ++V++ G+ LLE+   R      P     +  I L
Sbjct: 174 RIQGKPYSITSDVWSLGLTLLEVAQNR--FPFPPEGEPPLGPIEL 216

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I+H DIKP NI +      K+ DFG++K+L        T++ GT  Y++PE
Sbjct: 118 YLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVV-GTPYYLSPE 173

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
             +N P + K+++++ G VL E+   + 
Sbjct: 174 LCQNKPYNYKSDIWSLGCVLYELCTLKH 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    IIH DIKP NIL+DE     I+DF +A  + PD   T T   GT GYMAPE
Sbjct: 115 YLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTST--SGTPGYMAPE 169

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEE 152
                  S+  + ++ GV   E +  +R          +
Sbjct: 170 VLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRD 208

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH +    IIH DIKP N+L++     KI+DFG++K+L     +  T + GT  YM+PE
Sbjct: 114 YLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFV-GTVTYMSPE 170

Query: 114 WSKNTPISMKANVFNYGVVLLE 135
             +    S  A++++ G+ LLE
Sbjct: 171 RIQGESYSYAADIWSLGLTLLE 192

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN     II+ D+KP N+L+D     K+ DFG AK L   Q +T+T   GT  Y+APE
Sbjct: 108 YLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ-KTWTFC-GTPEYVAPE 162

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKP----EEIVFIN--LTYKCFIDRE 167
              N       + ++ G++L E++  R     D   P     +I+  N  L +  +ID+ 
Sbjct: 163 IILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKA 222

Query: 168 FDKLV 172
              L+
Sbjct: 223 AKDLI 227

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP 112
           YLH+     IIH DIK  NIL+      K+ DFGL+  L   + R T     GT  +MAP
Sbjct: 113 YLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMV---GTPYWMAP 166

Query: 113 EWSKNTPISMKANVFNYGVVLLE 135
           E     P   KA++++ G+  +E
Sbjct: 167 EVINGKPYDYKADIWSLGITAIE 189

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH + +  IIH D+KP NIL++     K+ DFG++  L+    +TF    GT  YMAPE
Sbjct: 115 YLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFV---GTSSYMAPE 169

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             +    S+K+++++ G+ L+E+ 
Sbjct: 170 RIQGNDYSVKSDIWSLGLSLIELA 193

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 62.8 bits (151), Expect = 9e-12
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRT-----FTLIRGTR 107
           YLH      IIH DIKP NIL+D      K+ DFGLAKLL    + +      +   GT 
Sbjct: 116 YLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTP 172

Query: 108 GYMAPEW---SKNTPISMKANVFNYGVVLLEIVCCRR-----NMEIDPSKPEEIVFINLT 159
           GYMAPE          S  +++++ G+ L E++               S+  +I+    T
Sbjct: 173 GYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPT 232

Query: 160 YKCFIDREFDKLVHGEEVNKKTLENMI 186
                           +     L+ ++
Sbjct: 233 PSLASPLSPSNPELISKAASDLLKKLL 259

Length = 384

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH++    I+H DIK  N+ +D +   KI D G+AKLL  +     T++ GT  Y++PE
Sbjct: 116 HLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIV-GTPYYLSPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCC 139
             ++ P + K++V+  GVVL E  CC
Sbjct: 172 LCEDKPYNEKSDVWALGVVLYE--CC 195

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YM 110
           YLH      I+H DIKP NI +D     K+ DFG A  L  + T     ++   G   YM
Sbjct: 114 YLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYM 170

Query: 111 APEWSKNTPISMK---ANVFNYGVVLLEIVCCRR 141
           APE             A++++ G V+LE+   +R
Sbjct: 171 APEVITGGKGKGHGRAADIWSLGCVVLEMATGKR 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YLH+      IH DIK  NIL++E   AK++DFG++  L     +  T+I GT  +MAP
Sbjct: 113 EYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVI-GTPFWMAP 168

Query: 113 EWSKNTPISMKANVFNYGVVLLEI 136
           E  +    + KA++++ G+  +E+
Sbjct: 169 EVIQEIGYNNKADIWSLGITAIEM 192

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H D+KP NI +D     K+ DFGLAK+L  D +   T + GT  YM+PE   +     
Sbjct: 131 VLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYV-GTPYYMSPEQLNHMSYDE 189

Query: 123 KANVFNYGVVLLEI 136
           K+++++ G ++ E+
Sbjct: 190 KSDIWSLGCLIYEL 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H      I+H D+KP N+L+      KI+DFGLA+L   ++ R ++    TR Y APE
Sbjct: 114 YMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YLH +    +IH DIK  NIL  +    K++DFG+A   + D ++    + GT  +MAP
Sbjct: 113 AYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVA-TKLNDVSKDDASVVGTPYWMAP 168

Query: 113 EWSKNTPISMKANVFNYGVVLLE 135
           E  + +  S  +++++ G  ++E
Sbjct: 169 EVIEMSGASTASDIWSLGCTVIE 191

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           LH   E  I+H D+K  NIL+      KI D G++K+L  +  +T     GT  YMAPE 
Sbjct: 119 LH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQI---GTPHYMAPEV 172

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNME 144
            K  P S K+++++ G +L E+       E
Sbjct: 173 WKGRPYSYKSDIWSLGCLLYEMATFAPPFE 202

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 8/88 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT-----LIRGTRG 108
           YLHN     IIH DIK  NIL+D     KISDFG++K L  +   T T      ++G+  
Sbjct: 121 YLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVF 177

Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEI 136
           +MAPE  K T  + KA++++ G +++E+
Sbjct: 178 WMAPEVVKQTSYTRKADIWSLGCLVVEM 205

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 22/106 (20%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ----------------- 96
           YLH+     IIH D+KP NIL+D+    KI+DFG AK+L P+                  
Sbjct: 117 YLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIE 173

Query: 97  --TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCR 140
              R F    GT  Y++PE     P    ++++  G ++ +++  +
Sbjct: 174 KNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGK 219

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NIL+DE    K++DFGL+K  +  + + ++   GT  YMAPE       + 
Sbjct: 119 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC-GTVEYMAPEVVNRRGHTQ 177

Query: 123 KANVFNYGVVLLEIV 137
            A+ +++GV++ E++
Sbjct: 178 SADWWSFGVLMFEML 192

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YM 110
           YL        IH D+   N L+ E    KISDFGL++ L  D        RG +    +M
Sbjct: 117 YLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY---YRKRGGKLPIRWM 170

Query: 111 APEWSKNTPISMKANVFNYGVVLLEI 136
           APE  K    + K++V+++GV+L EI
Sbjct: 171 APESLKEGKFTSKSDVWSFGVLLWEI 196

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 13/115 (11%)

Query: 31  RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK 90
           R  +E E+ L  + +L      + +H+     +IH DIK  NIL+      K+ DFG +K
Sbjct: 138 RTFREHEAGLLFIQVL------LAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSK 191

Query: 91  L----LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           +    +  D  RTF    GT  Y+APE  +  P S KA++F+ GV+L E++  +R
Sbjct: 192 MYAATVSDDVGRTFC---GTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKR 243

Length = 496

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTA-KISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           LH+     I+H D+K  NIL+D+     KI DFG++K+L   +++ +T++ GT  Y++PE
Sbjct: 114 LHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILS-SKSKAYTVV-GTPCYISPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
             +  P + K++++  G VL E+   +R  E
Sbjct: 172 LCEGKPYNQKSDIWALGCVLYELASLKRAFE 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      I++ D+KP N+L+D+    +ISD GLA + +    +      GT GYMAPE
Sbjct: 110 HLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLA-VELKGGKKIKGRA-GTPGYMAPE 164

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             +        + F  G  L E++  R
Sbjct: 165 VLQGEVYDFSVDWFALGCTLYEMIAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H   +A I+H DIK  NI + +    K+ DFG++K+L  + +   T++ GT  YM+PE
Sbjct: 116 YIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVV-GTPYYMSPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID 146
             +    + K++++  G VL E++  +R  +  
Sbjct: 172 LCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT 204

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 7/85 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I++ D+KP N+L+D     KI+DFG AK +   + RT+TL  GT  Y+APE
Sbjct: 116 YLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRV---KGRTYTLC-GTPEYLAPE 168

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +       + +  G+++ E++ 
Sbjct: 169 IILSKGYGKAVDWWALGILIYEMLA 193

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH E    I+H D+ P+NI++ E     I+DFGLAK   P+     T + GT  Y  PE
Sbjct: 128 YLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES--KLTSVVGTILYSCPE 183

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             KN P   KA+V+ +G +L ++ 
Sbjct: 184 IVKNEPYGEKADVWAFGCILYQMC 207

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 125 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 181

Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E +F
Sbjct: 182 QSDIWSMGLSLVELAIGRYPIPPPDAKELEAIF 214

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP N+L+D     +ISD GLA  L   Q++T     GT G+MAPE  +      
Sbjct: 118 IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYA-GTPGFMAPELLQGEEYDF 176

Query: 123 KANVFNYGVVLLEIVCCR 140
             + F  GV L E++  R
Sbjct: 177 SVDYFALGVTLYEMIAAR 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 28/141 (19%)

Query: 48  QPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGT 106
           Q +C + +LH      I++ D+KP N+L+D+    ++SD GLA + + D  +T T   GT
Sbjct: 103 QITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLA-VELKD-GKTITQRAGT 157

Query: 107 RGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDR 166
            GYMAPE  K  P S   + F  G  + E+V  R                         +
Sbjct: 158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPF----------------------K 195

Query: 167 EFDKLVHGEEVNKKTLENMIK 187
           +  + V  EE+ ++TLE+ +K
Sbjct: 196 DHKEKVAKEELKRRTLEDEVK 216

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 125 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 181

Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 182 QSDIWSMGLSLVEMAIGRYPIPPPDAKELELMF 214

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YM 110
           YL        IH D+   N L+ E    KISDFGL++ L  D       ++G +    +M
Sbjct: 118 YLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY---YKVKGGKLPIRWM 171

Query: 111 APEWSKNTPISMKANVFNYGVVLLEI 136
           APE  K    + K++V+++GV+L EI
Sbjct: 172 APESLKEGKFTSKSDVWSFGVLLWEI 197

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 13/93 (13%)

Query: 63  IIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQ--------TRTFTLIRGTRGYMA 111
           I+H D+KP NI++        AK+ DFG+  LL P          TRT T + GT  Y A
Sbjct: 100 IVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLL-PGVRDADVATLTRT-TEVLGTPTYCA 157

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
           PE  +  P++  ++++ +G++ LE +  +R ++
Sbjct: 158 PEQLRGEPVTPNSDLYAWGLIFLECLTGQRVVQ 190

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK-------LLMPDQTRTFTLIRGT 106
           YLH+     IIH D+KP NIL+D     K++DFGL+K       + + D  +    I GT
Sbjct: 108 YLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGT 164

Query: 107 RGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             Y+APE       S   + ++ G +L E + 
Sbjct: 165 PDYIAPEVILGQGHSKTVDWWSLGCILYEFLV 196

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 33/137 (24%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK----LLMPDQTRTFTLIRGTRGY 109
           YLH++    I+H D+K  N+L+D     KISDFG++K    +   DQ  +   ++G+  +
Sbjct: 123 YLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMS---MQGSVFW 176

Query: 110 MAPEW--SKNTPISMKANVFNYGVVLLEIVCCRR---NMEI------------DPSKPEE 152
           MAPE   S +   S K ++++ G V+LE+   RR   + E              P  P +
Sbjct: 177 MAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPD 236

Query: 153 IVF------INLTYKCF 163
           +        ++    CF
Sbjct: 237 VSMNLSPVALDFLNACF 253

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +IH DIK  NIL+ +  + K++DFG A  L  ++++  +++ GT  +MAPE
Sbjct: 131 YLHS---QNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVV-GTPYWMAPE 186

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             K      K ++++ G++ +E+ 
Sbjct: 187 VIKRKDYGPKVDIWSLGIMCIEMA 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 26/96 (27%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL-----IRGTRG 108
           YL ++     +H D+   N L+ E    KISDFGL++ +  D            IR    
Sbjct: 120 YLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIR---- 172

Query: 109 YMAPEWSKNTPISMKANVFN-------YGVVLLEIV 137
           +MAPE       S+K  +F        +GV+L EI 
Sbjct: 173 WMAPE-------SLKDGIFTSKSDVWSFGVLLWEIF 201

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YL+N     I+H DIKP NIL++     K+ DFG++  L+     TF    GT  YM+P
Sbjct: 117 TYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFV---GTSTYMSP 171

Query: 113 EWSKNTPISMKANVFNYGVVLLEI 136
           E  +    ++K++V++ G+ ++E+
Sbjct: 172 ERIQGGKYTVKSDVWSLGISIIEL 195

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL-----IRGTRG 108
           YL        +H D+   N L+ E    KISDFGL++ +  D            I+    
Sbjct: 117 YLE---SKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIK---- 169

Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
           +MAPE  K+   + K++V+++GV+L EI  
Sbjct: 170 WMAPESLKDGKFTSKSDVWSFGVLLWEIFT 199

Length = 258

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H      I+H D+KP N+L++     K++DFGLA+       R +T    TR Y APE
Sbjct: 113 FCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV-RPYTHYVVTRWYRAPE 168

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 116 YLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
             K +    KA++++ G+  +E+
Sbjct: 172 VIKQSAYDFKADIWSLGITAIEL 194

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    II+ D+KP N+L+D     K++DFG AK + PD  RTFTL  GT  Y+APE
Sbjct: 133 YLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKV-PD--RTFTLC-GTPEYLAPE 185

Length = 329

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG--TRGYMA 111
           YLH    A +IH D+KP NIL++     KI DFGLA+ + PD+     L     TR Y A
Sbjct: 118 YLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRA 174

Query: 112 PE 113
           PE
Sbjct: 175 PE 176

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 116 YLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
             + +    KA++++ G+  +E+
Sbjct: 172 VIQQSAYDSKADIWSLGITAIEL 194

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL-AKLLMPDQTR-TFTLIRGTRGYM 110
            +LH+     +IH D+K  NIL+      K++DFG+ AK     Q R TF    GT  +M
Sbjct: 117 NFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFI---GTPYWM 170

Query: 111 AP-----EWSKNTPISMKANVFNYGVVLLEI 136
           AP     E  K+ P   KA++++ G+ L+E+
Sbjct: 171 APEVVACETFKDNPYDYKADIWSLGITLIEL 201

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           +LH   E  II+ D+K  N+L+D     KI+DFG+ K  +L    T TF    GT  Y+A
Sbjct: 111 FLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFC---GTPDYIA 164

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINL 158
           PE     P     + +  GV+L E++  +   E D    E+ +F ++
Sbjct: 165 PEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD---DEDELFQSI 208

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+   A I+H DIKP N+L++     KI DFGLA++  PD+++  T    T+ Y APE
Sbjct: 118 YLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPE 174

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM-PDQTRTFTLIRGTRG---- 108
           YL        +H D+   N ++ E  T KI DFG+ + +   D  R     +G +G    
Sbjct: 134 YLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYR-----KGGKGLLPV 185

Query: 109 -YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
            +MAPE  K+   + K++V+++GVVL E+ 
Sbjct: 186 RWMAPESLKDGVFTTKSDVWSFGVVLWEMA 215

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YL  + +  I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+P
Sbjct: 113 TYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSP 167

Query: 113 EWSKNTPISMKANVFNYGVVLLEI 136
           E  + T  ++++++++ G+ L+E+
Sbjct: 168 ERLQGTHYTVQSDIWSLGLSLVEM 191

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)

Query: 31  RENKEKESNLGLLLILPQPSCN--VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           + ++++  NL  LL+     C    YL ++     IH D+   NIL++     KISDFGL
Sbjct: 100 QRHRDQI-NLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGL 155

Query: 89  AKLLMPDQTRTFTLIRGTRG----YMAPEWSKNTPISMKANVFNYGVVLLEI 136
           AK+L  D  + +  ++        + APE  + +  S  ++V+++GV L E+
Sbjct: 156 AKVLPED--KDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYEL 205

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-WSKNTPIS 121
           +IH D+KP NIL+D     K+ DFG++  L+  + +T +   G   YMAPE      P  
Sbjct: 136 VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRS--AGCAAYMAPERIDPPDPNP 193

Query: 122 ---MKANVFNYGVVLLEIV 137
              ++A+V++ G+ L+E+ 
Sbjct: 194 KYDIRADVWSLGISLVELA 212

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 24/51 (47%), Positives = 27/51 (52%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           IIH DIKP NIL+ E    K+ DFG A+ L        T    TR Y APE
Sbjct: 121 IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPE 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYM 110
           Y+H+   A +IH D+KP N+L++E    +I DFG+A+ L     +     T    TR Y 
Sbjct: 122 YIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYR 178

Query: 111 APE 113
           APE
Sbjct: 179 APE 181

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP--DQTRTFTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  P  D T   T    TR Y A
Sbjct: 121 YIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRA 177

Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    KA ++++ G +L E++  R
Sbjct: 178 PEIMLNSKGYTKAIDIWSVGCILAEMLSNR 207

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D+   N+L+ E    K++DFGLA+++  D        +    + APE +     S+K
Sbjct: 125 IHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIK 184

Query: 124 ANVFNYGVVLLEIV 137
           ++V+++G++L EIV
Sbjct: 185 SDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 50.8 bits (121), Expect = 8e-08
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 116 YLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
             K +    KA++++ G+  +E+
Sbjct: 172 VIKQSAYDSKADIWSLGITAIEL 194

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 11/86 (12%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYMA 111
           LH E    I++ D+KP NIL+D++   +ISD GLA  +   +T     IR   GT GYMA
Sbjct: 118 LHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET-----IRGRVGTVGYMA 169

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIV 137
           PE  KN   +   + +  G ++ E++
Sbjct: 170 PEVVKNERYTFSPDWWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH  C+  +++ D+K  N+++D+    KI+DFGL K  +      +TF    GT  Y+A
Sbjct: 110 YLH-SCD--VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC---GTPEYLA 163

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCR 140
           PE  ++       + +  GVV+ E++C R
Sbjct: 164 PEVLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 21/125 (16%)

Query: 31  RENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           +E  EK S    L I  +    + Y+H++    ++H D+KP NIL+  F    I D+G A
Sbjct: 104 KELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAA 160

Query: 90  KLLMPDQTRTFTL-----------------IRGTRGYMAPEWSKNTPISMKANVFNYGVV 132
                ++     +                 I GT  YMAPE     P S   +++  GV+
Sbjct: 161 IFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVI 220

Query: 133 LLEIV 137
           L +++
Sbjct: 221 LYQML 225

Length = 932

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTA---KISDFGLAKLLMPDQTRTFTL---IRGT 106
            YLH   E  IIH D+K  N+L+D   T    +I+DFG A  L    T        + GT
Sbjct: 117 SYLH---ENQIIHRDVKGANLLIDS--TGQRLRIADFGAAARLAAKGTGAGEFQGQLLGT 171

Query: 107 RGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             +MAPE  +        +V++ G V++E+  
Sbjct: 172 IAFMAPEVLRGEQYGRSCDVWSVGCVIIEMAT 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT----FTLIRGTRGY 109
           YLH+  +   IH DIK  NIL+ E  + KI+DFG++  L     RT     T + GT  +
Sbjct: 117 YLHSNGQ---IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFV-GTPCW 172

Query: 110 MAPE-WSKNTPISMKANVFNYGVVLLEI 136
           MAPE   +      KA+++++G+  +E+
Sbjct: 173 MAPEVMEQVHGYDFKADIWSFGITAIEL 200

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I+H D+KP+N+L+      K++DFGLA+       R  T    TR Y APE
Sbjct: 117 YLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLAR-SFGSPNRKMTHQVVTRWYRAPE 172

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           LH E    I++ D+KP NIL+D+    +ISD GLA  +   QT    +  GT GYMAPE 
Sbjct: 118 LHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRV--GTVGYMAPEV 172

Query: 115 SKNTPISMKANVFNYGVVLLEIV 137
            KN   +   + +  G +L E++
Sbjct: 173 VKNERYTFSPDWWALGCLLYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH+      +H DIK  NIL+D     K++DFG+AK ++     ++F   +G+  +MAP
Sbjct: 117 YLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSF---KGSPYWMAP 170

Query: 113 EWSKNT-PISMKANVFNYGVVLLEIV 137
           E         + A++++ G  +LE+ 
Sbjct: 171 EVIAQQGGYGLAADIWSLGCTVLEMA 196

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYMAPEWSKNTP 119
           I+H DIK  NI + +  T K+ DFG+A++L      T  L R   GT  Y++PE  +N P
Sbjct: 122 ILHRDIKSQNIFLTKDGTIKLGDFGIARVL----NSTVELARTCIGTPYYLSPEICENRP 177

Query: 120 ISMKANVFNYGVVLLEIVCCRRNME 144
            + K++++  G VL E+   +   E
Sbjct: 178 YNNKSDIWALGCVLYEMCTLKHAFE 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           +LH++    II+ D+K  N+++D     KI+DFG+ K  +     TRTF    GT  Y+A
Sbjct: 116 FLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFC---GTPDYIA 169

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIV 137
           PE     P     + + +GV+L E++
Sbjct: 170 PEIIAYQPYGKSVDWWAFGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     I+H D+KP NIL+      KI+DFGLA++         T +  T  Y APE
Sbjct: 122 FLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIY--SFEMALTSVVVTLWYRAPE 176

Query: 114 ----WSKNTPISM 122
                S  TP+ M
Sbjct: 177 VLLQSSYATPVDM 189

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH E +   IH DIK  NIL+ E    K++DFG++  L    ++  T + GT  +MAPE
Sbjct: 113 YLHEEGK---IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFV-GTPFWMAPE 168

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
             K +    KA++++ G+  +E+
Sbjct: 169 VIKQSGYDEKADIWSLGITAIEL 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 14/88 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A ++H D+KP NIL++E    KI DFGLA++  P  T   +    TR Y APE
Sbjct: 123 YVHS---AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVS----TRYYRAPE 175

Query: 114 ----WSKNTPISMKANVFNYGVVLLEIV 137
               W K     ++ ++++ G +  E++
Sbjct: 176 IMLTWQK---YDVEVDIWSAGCIFAEML 200

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 19/93 (20%)

Query: 54  YLH-NECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--------RTFTLIR 104
           YLH N     I+H DIK  NIL D     K+ DFG +K L   QT        ++ T   
Sbjct: 119 YLHSNM----IVHRDIKGANILRDSAGNVKLGDFGASKRL---QTICSSGTGMKSVT--- 168

Query: 105 GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           GT  +M+PE         KA+V++ G  ++E++
Sbjct: 169 GTPYWMSPEVISGEGYGRKADVWSVGCTVVEML 201

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH   E  I+H D+K  N+ +      K+ D G+A++L        TLI GT  YM+PE
Sbjct: 117 YLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLI-GTPYYMSPE 172

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
              N P + K++V+  G  + E+   +
Sbjct: 173 LFSNKPYNYKSDVWALGCCVYEMATLK 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H D+   NIL+ E   AK+SDFGLA++     +      +    + APE  K+   S 
Sbjct: 121 LVHRDLAARNILVSEDGVAKVSDFGLARV----GSMGVDNSKLPVKWTAPEALKHKKFSS 176

Query: 123 KANVFNYGVVLLEI 136
           K++V++YGV+L E+
Sbjct: 177 KSDVWSYGVLLWEV 190

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 12/114 (10%)

Query: 31  RENKEKESNLGLLLILPQPSCN--VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE K K      LL +    C    YL +      IH D+   N L+ E    K+SDFGL
Sbjct: 91  RERKGKL-GTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGL 146

Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIVCC 139
           A+ ++ DQ   +T  +GT+    +  PE    +  S K++V+++GV++ E+   
Sbjct: 147 ARYVLDDQ---YTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSE 197

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH +    +IH DIK  +IL+      K+SDFG    +  +  R  +L+ GT  +MAPE
Sbjct: 130 FLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLV-GTPYWMAPE 185

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                P   + ++++ G++++E+V
Sbjct: 186 VISRLPYGTEVDIWSLGIMVIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D+   N+L+ E   AK+SDFGLAK     Q      ++ T    APE  +    S 
Sbjct: 123 FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWT----APEALREKKFST 178

Query: 123 KANVFNYGVVLLEI 136
           K++V+++G++L EI
Sbjct: 179 KSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAPE 113
           II+ DIK  NIL+D      ++DFGL+K  + ++  R ++   GT  YMAPE
Sbjct: 126 IIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFC-GTIEYMAPE 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H   +  +IH DIK  NIL+      K+ DFG+A LL  + ++  T + GT  +MAPE
Sbjct: 116 YIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFV-GTPYWMAPE 171

Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
             ++      KA++++ G+ + E+ 
Sbjct: 172 VITEGKYYDTKADIWSLGITIYEMA 196

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I++ D+KP N+L+D+    K++DFG AK++    TRT+TL  GT  Y+APE   N     
Sbjct: 152 IVYRDLKPENLLLDKDGFIKMTDFGFAKVV---DTRTYTLC-GTPEYIAPEILLNVGHGK 207

Query: 123 KANVFNYGVVLLEIV 137
            A+ +  G+ + EI+
Sbjct: 208 AADWWTLGIFIYEIL 222

Length = 340

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE
Sbjct: 130 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPE 185

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E+V
Sbjct: 186 VVTRKAYGPKVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 112 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 165

Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
              K T     A+ F+ G +L +++
Sbjct: 166 VLQKGTAYDSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           +H+  +   +H DIKP N+L+D     K++DFG A  L  ++     L  GT  Y+APE 
Sbjct: 115 IHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEV 174

Query: 115 ------SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS 148
                        ++ + ++ GV+  E++  R       S
Sbjct: 175 LTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS 214

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP N+L++     K+ DFG++  L+    +T+    GT  YMAPE        +
Sbjct: 116 ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYV---GTNAYMAPERISGEQYGI 172

Query: 123 KANVFNYGVVLLEI 136
            ++V++ G+  +E+
Sbjct: 173 HSDVWSLGISFMEL 186

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 112 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 165

Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
              K       A+ F+ G +L +++
Sbjct: 166 VLQKGVAYDSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE         
Sbjct: 136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPEVVTRKAYGP 194

Query: 123 KANVFNYGVVLLEIV 137
           K ++++ G++ +E+V
Sbjct: 195 KVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ E    KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 124 IHRDLRAANILVSETLCCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 180

Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L EIV
Sbjct: 181 TIKSDVWSFGILLTEIV 197

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 9/87 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP--DQTRTFTLIRGTRGYMA 111
           Y+H   +  I+H D+K  NI +      KI DFG+++LLM   D   TFT   GT  YM+
Sbjct: 121 YMH---QRRILHRDLKAKNIFLKNN-LLKIGDFGVSRLLMGSCDLATTFT---GTPYYMS 173

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE  K+     K+++++ G +L E+ C
Sbjct: 174 PEALKHQGYDSKSDIWSLGCILYEMCC 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL  E +  IIH D+KP NIL+D     K+ DFG++  L+    +T     G R YMAPE
Sbjct: 122 YLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDA--GCRPYMAPE 177

Query: 114 W---SKNTPISMKANVFNYGVVLLEI 136
               S      ++++V++ G+ L E+
Sbjct: 178 RIDPSARDGYDVRSDVWSLGITLYEV 203

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D+   NIL+ E    KI+DFGLA+L+  D+   +T   G +    + APE +     
Sbjct: 125 IHRDLAARNILVGENLVCKIADFGLARLIEDDE---YTAREGAKFPIKWTAPEAANYGRF 181

Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L EIV
Sbjct: 182 TIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I+H DIK  NIL++     K++DFGLA+      +  +T    T  Y  PE
Sbjct: 115 YLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPE 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 48.2 bits (114), Expect = 7e-07
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  N+L+    + K++DFG    + P+Q++  T++ GT  +MAPE         
Sbjct: 136 VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPEVVTRKAYGP 194

Query: 123 KANVFNYGVVLLEIV 137
           K ++++ G++ +E+V
Sbjct: 195 KVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     II+ D+KP NIL+D      ++DFGL K  +  +  T T   GT  Y+APE
Sbjct: 111 YLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFC-GTPEYLAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             +  P     + +  G VL E++
Sbjct: 167 VLRKEPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            IH D+   NIL+ E    K++DFGLA+L+  D      L    +    + APE + +  
Sbjct: 125 SIHRDLAARNILVGEDLVCKVADFGLARLIKED----VYLSSDKKIPYKWTAPEAASHGT 180

Query: 120 ISMKANVFNYGVVLLEIV 137
            S K++V+++G++L E+ 
Sbjct: 181 FSTKSDVWSFGILLYEMF 198

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKL-LMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IIH DIKP N+L+D+    K++DFGL++  L   +        GT  Y+APE        
Sbjct: 118 IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKK------FVGTPDYLAPETILGVGDD 171

Query: 122 MKANVFNYGVVLLEIV 137
             ++ ++ G V+ E +
Sbjct: 172 KMSDWWSLGCVIFEFL 187

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH+     I++ D+KP NIL+D      ++DFGL K  +   D T TF    GT  Y+A
Sbjct: 111 YLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFC---GTPEYLA 164

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIV 137
           PE  +  P     + +  G VL E++
Sbjct: 165 PEVIRKQPYDNTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 110 YLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA-TMKTFCGTPEYLAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 167 VLEDNDYGRAVDWWGLGVVMYEMMCGR 193

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 63  IIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           I+H DIK  NI + +    AK+ DFG+A+ L       +T + GT  Y++PE  +N P +
Sbjct: 122 ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCV-GTPYYLSPEICQNRPYN 180

Query: 122 MKANVFNYGVVLLEIVCCRRNME 144
            K ++++ G VL E+   +   E
Sbjct: 181 NKTDIWSLGCVLYELCTLKHPFE 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           Y H+     I+H D+KP NIL++     K++DFGLA+   +P +T T  ++  T  Y AP
Sbjct: 113 YCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVV--TLWYRAP 167

Query: 113 E 113
           E
Sbjct: 168 E 168

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    I++ D+KP NIL+D+    K++DFG AK L   + RT+TL  GT  Y+APE
Sbjct: 116 YLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKL---RDRTWTLC-GTPEYLAPE 168

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           +LH      II+ D+K  N+++D     KI+DFG+ K  M D   TRTF    GT  Y+A
Sbjct: 116 FLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFC---GTPDYIA 169

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIV 137
           PE     P     + + YGV+L E++
Sbjct: 170 PEIIAYQPYGKSVDWWAYGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+      IH DIK  NIL+ E  T K++DFG A L+ P  +       GT  +MAPE
Sbjct: 130 YLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASLVSPANS-----FVGTPYWMAPE 181

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA 111
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D    +TF    GT  Y+A
Sbjct: 110 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC---GTPEYLA 163

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCR 140
           PE  ++       + +  GVV+ E++C R
Sbjct: 164 PEVLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  N+L+ E    KI+DFGLA+++  ++   +T   G +    + APE       
Sbjct: 125 IHRDLRAANVLVSESLMCKIADFGLARVIEDNE---YTAREGAKFPIKWTAPEAINFGSF 181

Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L EIV
Sbjct: 182 TIKSDVWSFGILLYEIV 198

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
            LH E     ++ D+KP NIL+D++   +ISD GLA + +P+       IR   GT GYM
Sbjct: 117 DLHRE---NTVYRDLKPENILLDDYGHIRISDLGLA-VKIPEG----ESIRGRVGTVGYM 168

Query: 111 APEWSKNTPISMKANVFNYGVVLLEIV 137
           APE   N   ++  + +  G ++ E++
Sbjct: 169 APEVLNNQRYTLSPDYWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +I+ D+KP NIL+D      + DFGL KL M D  +T T   GT  Y+APE       + 
Sbjct: 114 VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFC-GTPEYLAPELLLGHGYTK 172

Query: 123 KANVFNYGVVLLEIV 137
             + +  GV+L E++
Sbjct: 173 AVDWWTLGVLLYEML 187

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    +IH DIK  +IL+      K+SDFG    +  D  +  +L+ GT  +MAPE
Sbjct: 132 YLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLV-GTPYWMAPE 187

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
               TP   + ++++ G++++E+V
Sbjct: 188 VISRTPYGTEVDIWSLGIMVIEMV 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           II+ D+KP NIL+D     K++DFGL K  + + T T T   GT  YMAPE
Sbjct: 121 IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFC-GTIEYMAPE 170

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 12  ERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPH 71
           E GC     R Q G          +E+ LG+ L + +     YL +     +IH D+   
Sbjct: 82  EHGCLSDYLRAQRGKF-------SQETLLGMCLDVCEGM--AYLESSN---VIHRDLAAR 129

Query: 72  NILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGV 131
           N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    +  S K++V+++GV
Sbjct: 130 NCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGV 189

Query: 132 VLLEI 136
           ++ E+
Sbjct: 190 LMWEV 194

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH      II+ D+KP NIL+D      ++DFGL K  +     T TF    GT  Y+A
Sbjct: 111 YLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFC---GTPEYLA 164

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIV 137
           PE  +  P     + +  G VL E++
Sbjct: 165 PEVLRKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLL--MPDQTRTFTLIRGTRGYM 110
           YLH   +  I+H DIK  N+L++ +    KISDFG +K L  +   T TFT   GT  YM
Sbjct: 123 YLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFT---GTLQYM 176

Query: 111 APE 113
           APE
Sbjct: 177 APE 179

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 195 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPESIFDKVYT 253

Query: 122 MKANVFNYGVVLLEI 136
            +++V+++GV+L EI
Sbjct: 254 TQSDVWSFGVLLWEI 268

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YLH   E  IIH D+K  NIL       K++DFG++        R  + I GT  +MAP
Sbjct: 117 NYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI-GTPYWMAP 172

Query: 113 -----EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
                E SK+ P   KA+V++ G+ L+E+       +I+P   E
Sbjct: 173 EVVMCETSKDRPYDYKADVWSLGITLIEMA------QIEPPHHE 210

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE
Sbjct: 131 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPE 186

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMI 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    +IH D+KP N+L++     K+ DFG++  L+    +T     G + YMAPE
Sbjct: 118 YLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDA--GCKPYMAPE 173

Query: 114 W----SKNTPISMKANVFNYGVVLLEI 136
                       +K++V++ G+ ++E+
Sbjct: 174 RINPELNQKGYDVKSDVWSLGITMIEL 200

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 110 YLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA-TMKTFCGTPEYLAPE 165

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 166 VLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYMAPEWSKNTP 119
           I++ D+KP NIL+D+    +ISD GLA  +   +T     +R   GT GYMAPE   N  
Sbjct: 123 IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET-----VRGRVGTVGYMAPEVINNEK 177

Query: 120 ISMKANVFNYGVVLLEIV 137
            +   + +  G ++ E++
Sbjct: 178 YTFSPDWWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H DIKP N+ +      K+ D GL +      T   +L+ GT  YM+PE       + 
Sbjct: 127 IMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLV-GTPYYMSPERIHENGYNF 185

Query: 123 KANVFNYGVVLLEIVCCR 140
           K+++++ G +L E+   +
Sbjct: 186 KSDIWSLGCLLYEMAALQ 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H DIK  NI + +    K+ DFG A+LL        T + GT  Y+ PE  +N P + 
Sbjct: 121 VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYV-GTPYYVPPEIWENMPYNN 179

Query: 123 KANVFNYGVVLLEIVCCR 140
           K+++++ G +L E+   +
Sbjct: 180 KSDIWSLGCILYELCTLK 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 123 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 179

Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             TR Y APE           ++++ G ++ E++ 
Sbjct: 180 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIR 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG-TR---GYMAPEWSKNTP 119
           IH D+   N+L+      KI DFGLA+ +M D      +++G  R    +MAPE   N  
Sbjct: 163 IHRDLAARNVLLTHGKIVKICDFGLARDIMNDSN---YVVKGNARLPVKWMAPESIFNCV 219

Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG++L EI
Sbjct: 220 YTFESDVWSYGILLWEI 236

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+      KI+DFGLA+++  ++   +T   G +    + APE       
Sbjct: 124 IHRDLRAANILVSASLVCKIADFGLARVIEDNE---YTAREGAKFPIKWTAPEAINFGSF 180

Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++K++V+++G++L+EIV   R      S PE I  +   Y+
Sbjct: 181 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR 221

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM----PDQTRTFTLIRGTRGY 109
           Y+H+     +IH D+KP NIL++     K++DFGLA+ L       +    T    TR Y
Sbjct: 122 YIHS---GNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWY 178

Query: 110 MAPE 113
            APE
Sbjct: 179 RAPE 182

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+K  N+L+D+    KI+DFG+ K  M  + +  T   GT  Y+APE  K    + 
Sbjct: 117 IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFC-GTPDYIAPEILKGQKYNE 175

Query: 123 KANVFNYGVVLLEIV 137
             + +++GV+L E++
Sbjct: 176 SVDWWSFGVLLYEML 190

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN+    +IH DIK  +IL+      K+SDFG    +  +  +  +L+ GT  +MAPE
Sbjct: 133 YLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLV-GTPYWMAPE 188

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                P   + ++++ G++++E++
Sbjct: 189 VISRLPYGTEVDIWSLGIMVIEMI 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           +H D+   N+L+ E   AK+SDFGL K     Q      ++ T    APE  +    S K
Sbjct: 124 VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT----APEALREKKFSTK 179

Query: 124 ANVFNYGVVLLEI 136
           ++V+++G++L EI
Sbjct: 180 SDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 11/88 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      I+H DIKP N+L++     KI+DFG++++L        + + GT  YM+PE
Sbjct: 183 YLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV-GTIAYMSPE 238

Query: 114 WSKNTPISMKA------NVFNYGVVLLE 135
              NT ++  A      ++++ GV +LE
Sbjct: 239 -RINTDLNHGAYDGYAGDIWSLGVSILE 265

Length = 353

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            IH D+KP N L+D     K++DFGL+K ++   T   +++ G+  YMAPE  +      
Sbjct: 122 YIHRDLKPENFLIDASGHIKLTDFGLSKGIV---TYANSVV-GSPDYMAPEVLRGKGYDF 177

Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTY 160
             + ++ G +L E +C         S P E  + NL Y
Sbjct: 178 TVDYWSLGCMLYEFLCGFP--PFSGSTPNE-TWENLKY 212

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+ +   AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 234 IHRDVAARNVLLTDGRVAKICDFGLARDIMNDSN---YVVKGNARLPVKWMAPESIFDCV 290

Query: 120 ISMKANVFNYGVVLLEI 136
            +++++V++YG++L EI
Sbjct: 291 YTVQSDVWSYGILLWEI 307

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +    KI+DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 124 IHRDLRAANILVGDNLVCKIADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 180

Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L E+V
Sbjct: 181 TIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           YLH      IIH D+K  N+L+ +    KI+DFGLA+   +P +  T  ++  T  Y AP
Sbjct: 123 YLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVV--TLWYRAP 177

Query: 113 E 113
           E
Sbjct: 178 E 178

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ + + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 94  RECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 150

Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEI 136
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI
Sbjct: 151 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEI 198

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH +    IIH D+K  NI +++     I D G A+   P     F  + GT    APE
Sbjct: 172 YLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQF--PVVAPAFLGLAGTVETNAPE 226

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP-SKPEEIV 154
                  + KA++++ G+VL E++     +  DP S PEE V
Sbjct: 227 VLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYV 268

Length = 357

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R  +L+ GT  +MAPE     P   
Sbjct: 137 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLV-GTPYWMAPELISRLPYGP 195

Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 196 EVDIWSLGIMVIEMV 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP- 112
           YLH+     IIH D+K  N+L+      K++DFG++   +    R  + I GT  +MAP 
Sbjct: 125 YLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFI-GTPYWMAPE 180

Query: 113 ----EWSKNTPISMKANVFNYGVVLLEI 136
               E  K+TP   KA++++ G+ L+E+
Sbjct: 181 VVMCETMKDTPYDYKADIWSLGITLIEM 208

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG---TRGYM 110
           Y+H+   A ++H D+KP N+L++     KI DFGLA+    +       +     TR Y 
Sbjct: 120 YIHS---ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYR 176

Query: 111 APE 113
           APE
Sbjct: 177 APE 179

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +    KI+DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 124 IHRDLRSANILVGDGLVCKIADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 180

Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L E+V
Sbjct: 181 TIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H DIKP N+ +      K+ D GL +      T   +L+ GT  YM+PE       + 
Sbjct: 127 VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLV-GTPYYMSPERIHENGYNF 185

Query: 123 KANVFNYGVVLLEI 136
           K+++++ G +L E+
Sbjct: 186 KSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 10/80 (12%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + APE    
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTAPEAIAY 183

Query: 118 TPISMKANVFNYGVVLLEIV 137
              +  ++V++YG+V+ E++
Sbjct: 184 RKFTSASDVWSYGIVMWEVM 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP NI ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 133 YIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 185

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 8/62 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMA 111
           YLH   E  I++ D+K  N+L+D     KI+DFGL K  M   D+T TF    GT  ++A
Sbjct: 116 YLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFC---GTPEFLA 169

Query: 112 PE 113
           PE
Sbjct: 170 PE 171

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 15/83 (18%)

Query: 65  HCDIKPHNILMDEFWTAKISDFGLAKLL--MPDQTRTFTLIRGTRGYMAPEW-----SKN 117
           H D+KP N+L+      KI+DFGLA+ +   P     +T    TR Y APE      S +
Sbjct: 122 HRDLKPENLLVSGPEVVKIADFGLAREIRSRPP----YTDYVSTRWYRAPEILLRSTSYS 177

Query: 118 TPISMKANVFNYGVVLLEIVCCR 140
           +P+ + A     G ++ E+   R
Sbjct: 178 SPVDIWA----LGCIMAELYTLR 196

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           +LH   +  I++ D+KP NIL+D      + DFGL+K  L     T TF    GT  Y+A
Sbjct: 111 HLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFC---GTTEYLA 164

Query: 112 PE-WSKNTPISMKANVFNYGVVLLEIVC 138
           PE        +   + ++ GV++ E+ C
Sbjct: 165 PEVLLDEKGYTKHVDFWSLGVLVFEMCC 192

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE------WSK 116
           IIH D+KP N+L++     K+ DFG++  L+    +T     G + YMAPE       ++
Sbjct: 124 IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNI---GCQSYMAPERIKSGGPNQ 180

Query: 117 NTPISMKANVFNYGVVLLEI 136
           N   +++++V++ G+ +LE+
Sbjct: 181 NPTYTVQSDVWSLGLSILEM 200

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YLH      +IH DIK  NIL+ +    K+ DFG++  L     R  T I GT  +MAP
Sbjct: 127 AYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFI-GTPYWMAP 182

Query: 113 E 113
           E
Sbjct: 183 E 183

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H DIKP N+ +      K+ D GL +      T   +L+ GT  YM+PE       + 
Sbjct: 127 VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLV-GTPYYMSPERIHENGYNF 185

Query: 123 KANVFNYGVVLLEI 136
           K+++++ G +L E+
Sbjct: 186 KSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           +LH   E  II+ D+K  N+L+D     K++D+G+ K  L   D T TF    GT  Y+A
Sbjct: 111 FLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFC---GTPNYIA 164

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
           PE  +        + +  GV++ E++  R   +I    P+
Sbjct: 165 PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPD 204

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 28/100 (28%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAK-------------LLMPDQTRTFTLIR------ 104
           IH DIKP NIL+D     K++DFGL K                    R   L+R      
Sbjct: 123 IHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQ 182

Query: 105 ---------GTRGYMAPEWSKNTPISMKANVFNYGVVLLE 135
                    GT  Y+APE  + TP  ++ + ++ GV+L E
Sbjct: 183 RRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYE 222

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM-----PDQTRTFTLIRGTRG 108
           YLHN C   ++H DIK +N+++      K+ DFG A+ L         +     + GT  
Sbjct: 117 YLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPY 173

Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEI 136
           +MAPE    +    K+++++ G  + E+
Sbjct: 174 WMAPEVINESGYGRKSDIWSIGCTVFEM 201

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL----------MPDQTRTFTLI 103
           YLH   E  I+H DIK  NIL+D     KI+DFGLA+                TR +T +
Sbjct: 130 YLH---ENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNL 186

Query: 104 RGTRGYMAPE 113
             TR Y  PE
Sbjct: 187 VVTRWYRPPE 196

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H DIKP N+L+      K+ DFG A+ L       +T    TR Y +PE     P   
Sbjct: 121 IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGK 180

Query: 123 KANVFNYGVVLLEI 136
             ++++ G +L E+
Sbjct: 181 AVDMWSVGCILGEL 194

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 15/89 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF----TLIRGTRGY 109
           YLH   E   IH DIK  NIL+ E    K++DFG++  L    T T     + I GT  +
Sbjct: 116 YLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQL----TATIAKRKSFI-GTPYW 167

Query: 110 MAPEW---SKNTPISMKANVFNYGVVLLE 135
           MAPE     +      K +++  G+  +E
Sbjct: 168 MAPEVAAVERKGGYDGKCDIWALGITAIE 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-TRTF-TLIRGTRGYMA 111
           Y+H    A + H D+KP NIL +     KI DFGLA++   D  T  F T    TR Y A
Sbjct: 118 YIHT---ANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRA 174

Query: 112 PE-----WSKNTP 119
           PE     +SK TP
Sbjct: 175 PELCGSFFSKYTP 187

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R  +  R    +MAPE   +   +
Sbjct: 196 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGS-ARLPLKWMAPESIFDKVYT 254

Query: 122 MKANVFNYGVVLLEI 136
            +++V+++GV+L EI
Sbjct: 255 TQSDVWSFGVLLWEI 269

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           IH D+KP NIL+ +    K+ DFG A++L       +T    TR Y APE
Sbjct: 122 IHRDVKPENILITKQGQIKLCDFGFARILTG-PGDDYTDYVATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 124 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 180

Query: 121 SMKANVFNYGVVLLEI 136
           ++K++V+++G++L E+
Sbjct: 181 TIKSDVWSFGILLTEL 196

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMAPEWSKNTPI 120
           II+ D+K  N+++D     KI+DFG+ K  M D   T+TF    GT  Y+APE     P 
Sbjct: 122 IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFC---GTPDYIAPEIIAYQPY 178

Query: 121 SMKANVFNYGVVLLEIV 137
               + + +GV+L E++
Sbjct: 179 GKSVDWWAFGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +H DIKP NILMD     +++DFG    LM D T   ++  GT  Y++PE
Sbjct: 124 VHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPE 173

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-----RTFTLIRGTRGYMAPEWSKNT 118
           +H D+   N+L+ E    KI DFGLA+ +M D        TF  ++    +MAPE   N 
Sbjct: 261 VHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLK----WMAPESIFNN 316

Query: 119 PISMKANVFNYGVVLLEI 136
             +  ++V+++G++L EI
Sbjct: 317 LYTTLSDVWSFGILLWEI 334

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 20/113 (17%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAK-LLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           I++ DIK  NIL+D      ++DFGL+K  L  ++ RT++   GT  YMAPE  +     
Sbjct: 126 IVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFC-GTIEYMAPEIIRGKGGH 184

Query: 122 MKA-NVFNYGVVLLEIV-----------------CCRRNMEIDPSKPEEIVFI 156
            KA + ++ G+++ E++                   RR ++ DP  P  I   
Sbjct: 185 GKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPE 237

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 39  NLGLLLILPQPSCN--VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ 96
           NL  LL+  Q  C    YLH++     IH D+   N+L+D     KI DFGLAK + P+ 
Sbjct: 105 NLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV-PEG 160

Query: 97  TRTFTLIRGTRG---YMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEI 153
              + +         + A E  K    S  ++V+++GV L E++    + +  P K EE+
Sbjct: 161 HEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEM 220

Query: 154 V 154
           +
Sbjct: 221 I 221

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H+     IIH DIKP NIL+ +    K+ DFG A+ L       +T    TR Y APE
Sbjct: 115 FCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG-EVYTDYVATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 187

Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             TR Y APE           ++++ G ++ E++ 
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIK 220

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           +H D+   NIL++     K+SDFGL+++L  D   T+T   G     + APE       +
Sbjct: 129 VHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFT 188

Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
             ++V+++G+V+ E++        D S  E +  IN  ++
Sbjct: 189 SASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFR 228

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+    +   T  ++
Sbjct: 128 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVV 184

Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 185 --TRYYRAPEVILGMGYKENVDIWSVGCIMGELV 216

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 9/83 (10%)

Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEW 114
           E  ++H D+   N+L+ E    KISDFGL++ +  +     + ++ ++G     +MA E 
Sbjct: 145 EMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEED----SYVKRSKGRIPVKWMAIES 200

Query: 115 SKNTPISMKANVFNYGVVLLEIV 137
             +   + +++V+++GV+L EIV
Sbjct: 201 LFDHIYTTQSDVWSFGVLLWEIV 223

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I++ D+KP NIL+D      ++DFGL K  +     T T   GT  Y+APE
Sbjct: 111 YLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFC-GTPEYLAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                P     + +  G VL E++
Sbjct: 167 VLHKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH++    I++ D+K  NIL+D     KI+DFG+ K  M    +T T   GT  Y+APE
Sbjct: 111 FLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFC-GTPDYIAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                  +   + +++GV+L E++
Sbjct: 167 ILLGQKYNTSVDWWSFGVLLYEML 190

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 201 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 259

Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 260 IQSDVWSFGVLLWEI 274

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH  C   I+H D+KP NIL+      K++DFGLA++       T  ++  T  Y APE
Sbjct: 123 FLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVV--TLWYRAPE 177

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 178 VLLQSTYATPVDMWSVGCIFAEM 200

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA-KLLMPDQTRTFTLIRGTRGYMA 111
            YLH      IIH D+K  NI +DE   A + DFG A KL     T       GT    +
Sbjct: 199 AYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNS 255

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNM 143
           PE     P   K ++++ G+VL E+      +
Sbjct: 256 PELLALDPYCAKTDIWSAGLVLFEMSVKNVTL 287

Length = 392

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAPE 113
           ++H D+KP N+L+D     K++DFGLA+   +P   RT+T    T  Y APE
Sbjct: 120 VLHRDLKPQNLLIDREGALKLADFGLARAFGVP--VRTYTHEVVTLWYRAPE 169

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  L   D T TF    GT  Y+A
Sbjct: 111 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC---GTPNYIA 164

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           PE  +        + +  GV++ E++  R   +I
Sbjct: 165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 198

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 17/74 (22%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL-LM-----------PDQTRTFT 101
           YLHN     I+H D+KP N+L+      K++DFGL+K+ LM              TR F 
Sbjct: 116 YLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFL 172

Query: 102 --LIRGTRGYMAPE 113
              + GT  Y+APE
Sbjct: 173 DKQVCGTPEYIAPE 186

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-----QTRTFTLIRGTRGYMAPEWSKN 117
            +H D+   N L+ E  T KISDFGL++ +        Q+++   +R    +M PE    
Sbjct: 145 FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVR----WMPPEAILY 200

Query: 118 TPISMKANVFNYGVVLLEI 136
              + +++++++GVVL EI
Sbjct: 201 GKFTTESDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   NIL+      KI DFGLA+ +  D      +++G       +MAPE   N  
Sbjct: 236 IHRDLAARNILLTHGRITKICDFGLARDIRNDSN---YVVKGNARLPVKWMAPESIFNCV 292

Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG++L EI
Sbjct: 293 YTFESDVWSYGILLWEI 309

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +H DIKP N+L+D+    +++DFG    L+ D T    +  GT  Y++PE
Sbjct: 124 VHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPE 173

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAPE 113
           ++H D+KP N+L++     K++DFGLA+   +P   RT+T    T  Y APE
Sbjct: 121 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYRAPE 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 20/129 (15%)

Query: 14  GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNI 73
           G  VK + K +GA+      K          IL   S   YLH+     I+H DIK  NI
Sbjct: 90  GGSVKDQLKAYGALTESVTRKYTRQ------ILEGMS---YLHSNM---IVHRDIKGANI 137

Query: 74  LMDEFWTAKISDFGLAKLLMPDQT--RTFTLIR---GTRGYMAPEWSKNTPISMKANVFN 128
           L D     K+ DFG +K L   QT   + T IR   GT  +M+PE         KA+V++
Sbjct: 138 LRDSAGNVKLGDFGASKRL---QTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWS 194

Query: 129 YGVVLLEIV 137
            G  ++E++
Sbjct: 195 LGCTVVEML 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D+   N L+D+    K+SDFGL++ ++ D+   +T   G++    +  PE    +  
Sbjct: 122 IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE---YTSSVGSKFPVRWSPPEVLLYSKF 178

Query: 121 SMKANVFNYGVVLLEI 136
           S K++V+ +GV++ E+
Sbjct: 179 SSKSDVWAFGVLMWEV 194

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           II+ DIK  NIL+D      ++DFGL+K    D+        GT  YMAP+
Sbjct: 126 IIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPD 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 135 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 187

Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 188 IMLNWMHYNQTVDIWSVGCIMAELLTGR 215

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEW 114
           E  ++H D+   N+L+      KI+DFGLAKLL  D+           G     +MA E 
Sbjct: 127 EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKE----YHAEGGKVPIKWMALES 182

Query: 115 SKNTPISMKANVFNYGVVLLEI 136
             +   + K++V++YGV + E+
Sbjct: 183 ILHRIYTHKSDVWSYGVTVWEL 204

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +IH DIK  NIL+ E    K++DFG A    P    +F    GT  +MAPE
Sbjct: 136 YLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSP--ANSFV---GTPYWMAPE 187

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-----RTFTLIRGTRGYMAPEWSKNT 118
           +H D+   N+L+ +    KI DFGLA+ +M D        TF  ++    +MAPE   + 
Sbjct: 259 VHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK----WMAPESIFDN 314

Query: 119 PISMKANVFNYGVVLLEI 136
             +  ++V++YG++L EI
Sbjct: 315 LYTTLSDVWSYGILLWEI 332

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 18/83 (21%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLL----------MPDQTRTFTLIRGTRGYMAPE 113
           +H D+   NIL++     KI DFGL K+L           P ++  F        + APE
Sbjct: 130 VHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIF--------WYAPE 181

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  S+ ++V+++GVVL E+
Sbjct: 182 SLTESKFSVASDVWSFGVVLYEL 204

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
           YL       ++H ++   NIL+      +I+DFG+A LL PD  + F +  +    +MA 
Sbjct: 124 YLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMAL 180

Query: 113 EWSKNTPISMKANVFNYGVVLLEIV 137
           E       + +++V++YGV + E++
Sbjct: 181 ESILFGRYTHQSDVWSYGVTVWEMM 205

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           +LH   E  II+ D+K  N+L+D     K++D+G+ K  +   D T TF    GT  Y+A
Sbjct: 111 FLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFC---GTPNYIA 164

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           PE  +        + +  GV++ E++  R   +I
Sbjct: 165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 198

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 12/79 (15%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW----SKNTP 119
           IH D+   NIL+ E + AKI+DFGL++            ++ T G +   W    S N  
Sbjct: 146 IHRDLAARNILVGENYVAKIADFGLSR-------GQEVYVKKTMGRLPVRWMAIESLNYS 198

Query: 120 I-SMKANVFNYGVVLLEIV 137
           + +  ++V++YGV+L EIV
Sbjct: 199 VYTTNSDVWSYGVLLWEIV 217

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+ 
Sbjct: 141 VHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKDG 196

Query: 119 PISMKANVFNYGVVLLEI 136
             +  ++V+++GVVL EI
Sbjct: 197 VFTTYSDVWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH++    II+ D+K  N+++D     KI+DFG+ K  +    R  T   GT  Y+APE
Sbjct: 111 FLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFC-GTPDYIAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             +    +   + +++GV+L E++
Sbjct: 167 ILQGLKYTFSVDWWSFGVLLYEML 190

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
           Y+H+   A ++H D+KP N+L++     KI DFGLA+     +   F T    TR Y AP
Sbjct: 123 YIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLAR--TTSEKGDFMTEYVVTRWYRAP 177

Query: 113 E 113
           E
Sbjct: 178 E 178

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 124 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 180

Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 181 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH   +  II+ D+K  N+L+D     K++DFG+ K  + +   T T   GT  Y+APE
Sbjct: 111 FLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFC-GTPDYIAPE 166

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
             +        + +  GV+L E++C
Sbjct: 167 ILQEMLYGPSVDWWAMGVLLYEMLC 191

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMAPEWSKN 117
           E   +H D+   N+L+     AKISDFGL+K L  D+   +  T  +    + APE    
Sbjct: 113 ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNY 172

Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 173 YKFSSKSDVWSFGVLMWE 190

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H    A IIH D+KP N+ ++E    KI DFGLA+    D   T  ++  TR Y APE
Sbjct: 133 YIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR--QTDSEMTGYVV--TRWYRAPE 185

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAK-LLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
            IH D+   N+L+ E    KI+DFGLA+ +   D  R  T  R    +MAPE   +   +
Sbjct: 153 CIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYT 212

Query: 122 MKANVFNYGVVLLEIV 137
            +++V+++GV+L EI 
Sbjct: 213 HQSDVWSFGVLLWEIF 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +I+ D+K  NIL+D     K++DFG+ K  + +   T T   GT  Y+APE  +      
Sbjct: 117 VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFC-GTPDYIAPEILQELEYGP 175

Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFIDRE 167
             + +  GV++ E++  +   E D      E I+  ++ Y  ++ +E
Sbjct: 176 SVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKE 222

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRG--TRGYM 110
           Y+H+   A ++H D+KP N+ ++ E    KI DFGLA+++ P  +    L  G  T+ Y 
Sbjct: 129 YIHS---ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYR 185

Query: 111 APE 113
           +P 
Sbjct: 186 SPR 188

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTR---GYMAPEWS 115
           E   +H D+   NIL++     K+SDFGL++ L  D +  T+T   G +    + APE  
Sbjct: 124 EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI 183

Query: 116 KNTPISMKANVFNYGVVLLEIV 137
                +  ++V++YG+V+ E++
Sbjct: 184 AYRKFTSASDVWSYGIVMWEVM 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPD----QTRTFTLIRGTRGYMAPEWSKNTP 119
           +H D+   N+L+     AKISDFGL+K L  D    + R+    +    + APE      
Sbjct: 117 VHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAG--KWPLKWYAPECINFRK 174

Query: 120 ISMKANVFNYGVVLLE 135
            S +++V++YG+ + E
Sbjct: 175 FSSRSDVWSYGITMWE 190

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 19/73 (26%), Positives = 40/73 (54%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D+   N L+      K+SDFG+ + ++ D+  + +  +    +  PE    +  S K
Sbjct: 122 IHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSK 181

Query: 124 ANVFNYGVVLLEI 136
           ++V+++GV++ E+
Sbjct: 182 SDVWSFGVLMWEV 194

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT-----LIRGTRG 108
           YLH+     I+H DIK  NIL D     K+ DFG +K L   QT   +      + GT  
Sbjct: 121 YLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRL---QTICLSGTGMKSVTGTPY 174

Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           +M+PE         KA++++ G  ++E++
Sbjct: 175 WMSPEVISGEGYGRKADIWSVGCTVVEML 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF 100
           IH DIKP N+L+D     K+SDFGL   L       F
Sbjct: 123 IHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEF 159

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 9/78 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+ 
Sbjct: 141 VHRDLAARNCMVAHDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMAPESLKDG 196

Query: 119 PISMKANVFNYGVVLLEI 136
             +  ++++++GVVL EI
Sbjct: 197 VFTTSSDMWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           +    E   IH D+   N+L+ E   +KI+DFGL++    +     T+ R    +MA E 
Sbjct: 132 MQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSR--GEEVYVKKTMGRLPVRWMAIES 189

Query: 115 SKNTPISMKANVFNYGVVLLEIV 137
              +  + K++V+++GV+L EIV
Sbjct: 190 LNYSVYTTKSDVWSFGVLLWEIV 212

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +H DIKP N+L+D     +++DFG    +  D T   ++  GT  Y++PE
Sbjct: 124 VHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPE 173

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 63  IIHCDIKPHNILMDEFWTA-KISDFGLAKLL-MPDQTRTFTLIRGTRGYMAPE 113
           ++H D+KP N+L+D    A K++DFGLA+   +P   RTFT    T  Y APE
Sbjct: 123 VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP--VRTFTHEVVTLWYRAPE 173

Length = 294

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 156 IHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 215

Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 216 QSDVWSFGVLLWEI 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-----QTRTFTLIRGTRGYMAPEWSKNT 118
           +H D+   NIL+ E    KISD GL++ +        Q ++   IR    +M PE     
Sbjct: 146 VHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIR----WMPPEAIMYG 201

Query: 119 PISMKANVFNYGVVLLEI 136
             S  ++++++GVVL EI
Sbjct: 202 KFSSDSDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H    A IIH D+KP N+ ++E    KI DFGLA+    D   T  ++  TR Y APE
Sbjct: 132 YIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLAR--HADAEMTGYVV--TRWYRAPE 184

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +H DIK  NIL++     K++DFGLA+L   +++R +T    T  Y  PE
Sbjct: 138 LHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPE 187

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +    
Sbjct: 120 VHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKF 179

Query: 121 SMKANVFNYGVVLLEIV 137
           + K++V+++GV+L E++
Sbjct: 180 TTKSDVWSFGVLLWELM 196

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +IH D+K  NIL+ E    K+ DFG A ++ P          GT  +MAPE
Sbjct: 130 YLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANX-----FVGTPYWMAPE 181

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL----LMPDQTRTFTLIRGTRGYM 110
           +H+     ++H D+K  NI +      K+ DFG +K     +  D   +F    GT  Y+
Sbjct: 185 VHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFC---GTPYYL 238

Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
           APE  +    S KA++++ GV+L E++   R  +  PS+ E
Sbjct: 239 APELWERKRYSKKADMWSLGVILYELLTLHRPFK-GPSQRE 278

Length = 478

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH   +  I+H D+K  N+L++     KI DFGLA+       + +T +  T  Y APE
Sbjct: 121 HLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREY-GSPLKPYTQLVVTLWYRAPE 176

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKL 91
           YLH      ++H D+KP NIL+     E    KI D GLA+L
Sbjct: 123 YLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARL 161

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    +I DFGLA+    + T          GY+A  
Sbjct: 133 YIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMT----------GYVATR 179

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
           W +   I +    +N  V +  + C
Sbjct: 180 WYRAPEIMLNWMHYNQTVDIWSVGC 204

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           +   IH D+   NIL+ E + AKI+DFGL++    +     T+ R    +MA E    + 
Sbjct: 130 QKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPVRWMAIESLNYSV 187

Query: 120 ISMKANVFNYGVVLLEIV 137
            +  ++V++YGV+L EIV
Sbjct: 188 YTTNSDVWSYGVLLWEIV 205

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      IIH DIK  NI ++      + DFG A   +      +    GT    APE
Sbjct: 197 YLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPE 253

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNM 143
                P     ++++ G+VL E+  C  ++
Sbjct: 254 LLARDPYGPAVDIWSAGIVLFEMATCHDSL 283

Length = 391

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +IH DIK  NIL+ E    K++DFG A +  P  +       GT  +MAPE
Sbjct: 140 YLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPANS-----FVGTPYWMAPE 191

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAPEWSKNTP-I 120
           ++H D+KP N+L+D     K++DFGLA+   +P   R +T    T  Y APE    +P  
Sbjct: 122 VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP--VRVYTHEVVTLWYRAPEVLLGSPRY 179

Query: 121 SMKANVFNYGVVLLEIV 137
           S   ++++ G +  E+ 
Sbjct: 180 STPVDIWSIGTIFAEMA 196

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           I H DIKP NIL+      K++DFG  + +       +T    TR Y APE
Sbjct: 121 IFHRDIKPENILIK-DDILKLADFGSCRGI--YSKPPYTEYISTRWYRAPE 168

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAK-LLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 162 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 221

Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 222 QSDVWSFGVLLWEI 235

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLA 89
           IH DIKP NIL+D     K+SDFGL+
Sbjct: 123 IHRDIKPDNILIDRGGHIKLSDFGLS 148

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)

Query: 9   IEGERGCEVKGKRKQFGAV---VRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIH 65
           +E   G  +K + K +GA+   V RR  ++         IL   S   YLH+     I+H
Sbjct: 85  VEYMPGGSIKDQLKAYGALTENVTRRYTRQ---------ILQGVS---YLHSNM---IVH 129

Query: 66  CDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT-----LIRGTRGYMAPEWSKNTPI 120
            DIK  NIL D     K+ DFG +K +   QT   +      + GT  +M+PE       
Sbjct: 130 RDIKGANILRDSAGNVKLGDFGASKRI---QTICMSGTGIKSVTGTPYWMSPEVISGEGY 186

Query: 121 SMKANVFNYGVVLLEIV 137
             KA+V++    ++E++
Sbjct: 187 GRKADVWSVACTVVEML 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LHN     IIH D+K +NIL+      K+ DFG++  L   + R  T + GT  +MAPE
Sbjct: 143 HLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSV-GTPFWMAPE 198

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL-LMPDQTRTFTLIRGTRGYMAP 112
           Y+H +    I+H D+KP N+L+      K++DFGLA+   +P QT +  ++  T  Y  P
Sbjct: 118 YIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVV--TLWYRPP 172

Query: 113 E-WSKNTPISMKANVFNYGVVLLEIV 137
           +     T  S   +++  G + +E++
Sbjct: 173 DVLLGATDYSSALDIWGAGCIFIEML 198

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 38  SNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ 96
               L  +  Q +  + YL        +H D+   N+L+     AKISDFG+++ L    
Sbjct: 93  PVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS 149

Query: 97  TRTFTLIRGTRG------YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
                  R T        + APE       S K++V++YGV L E  
Sbjct: 150 ----DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAF 192

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H D+KP NIL+      K++DFGLA++       T  ++  T  Y APE    +  + 
Sbjct: 131 VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV--TLWYRAPEVLLQSSYAT 188

Query: 123 KANVFNYGVVLLEI 136
             ++++ G +  E+
Sbjct: 189 PVDLWSVGCIFAEM 202

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++ +   +H DIK  NIL+ +    K++DFG+A  +     +  + I GT  +MAPE
Sbjct: 121 YLHSKGK---MHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFI-GTPYWMAPE 176

Query: 114 WS---KNTPISMKANVFNYGVVLLEI 136
            +   KN   +   +++  G+  +E+
Sbjct: 177 VAAVEKNGGYNQLCDIWAVGITAIEL 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 159 IHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 218

Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV++ EI
Sbjct: 219 QSDVWSFGVLMWEI 232

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 23/117 (19%)

Query: 31  RENKEKESNLGLLLILPQ-PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           REN  K +   L+ +L    S   YL        +H D+   NIL++     K+SDFGL+
Sbjct: 97  RENDGKFTVGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLS 153

Query: 90  KLL-MPDQTRTFTLIRGTRG------YMAPE---WSKNTPISMKANVFNYGVVLLEI 136
           + L   + T T      T+G      + APE   + K T  S   +V+++G+V+ E+
Sbjct: 154 RRLEDSEATYT------TKGGKIPIRWTAPEAIAYRKFTSAS---DVWSFGIVMWEV 201

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-----WSKN 117
           +IH DIK  N+L+ E    K+ DFG++  L     R  T I GT  +MAPE      + +
Sbjct: 132 VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI-GTPYWMAPEVIACDENPD 190

Query: 118 TPISMKANVFNYGVVLLEI 136
                K+++++ G+  +E+
Sbjct: 191 ATYDFKSDLWSLGITAIEM 209

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +IH DIK  N+L+ E    K+ DFG++  L     R  T I GT  +MAPE
Sbjct: 142 VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI-GTPYWMAPE 191

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.97
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.97
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.97
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.96
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.96
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.96
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.96
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.96
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.96
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.96
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.95
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.95
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.95
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.95
KOG0605	550	consensus NDR and related serine/threonine kinases	99.94
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.94
KOG0578	550	consensus p21-activated serine/threonine protein k	99.94
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.94
KOG0198	313	consensus MEKK and related serine/threonine protei	99.94
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.94
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.94
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.94
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.93
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.93
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.93
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.93
PHA02882	294	putative serine/threonine kinase; Provisional	99.93
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.93
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.93
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.93
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.93
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.93
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.93
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.93
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.93
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.93
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.93
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.93
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.93
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.93
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.93
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.93
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.93
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.93
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.92
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.92
PHA03212	391	serine/threonine kinase US3; Provisional	99.92
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.92
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.92
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.92
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.92
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.92
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.92
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.92
PTZ00283	496	serine/threonine protein kinase; Provisional	99.92
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.92
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.92
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.92
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.92
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.92
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.92
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.92
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.92
KOG0589	426	consensus Serine/threonine protein kinase [General	99.92
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.92
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.92
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.92
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.92
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.92
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.92
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.92
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.92
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.92
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.92
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.92
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.92
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.92
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.92
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.92
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.92
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.92
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.92
PTZ00036	440	glycogen synthase kinase; Provisional	99.92
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.92
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.92
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.92
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.92
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.92
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.92
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.92
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.92
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.92
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.92
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.92
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.91
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.91
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.91
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.91
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.91
PTZ00267	478	NIMA-related protein kinase; Provisional	99.91
PHA02988	283	hypothetical protein; Provisional	99.91
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.91
PHA03207	392	serine/threonine kinase US3; Provisional	99.91
PHA03211	461	serine/threonine kinase US3; Provisional	99.91
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.91
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.91
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.91
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.91
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.91
PTZ00284	467	protein kinase; Provisional	99.91
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.91
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.91
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.91
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.91
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.91
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.91
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.91
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.91
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.9
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.9
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.9
KOG0584	632	consensus Serine/threonine protein kinase [General	99.9
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.9
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.9
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.9
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.9
KOG0610	459	consensus Putative serine/threonine protein kinase	99.9
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.9
PHA03209	357	serine/threonine kinase US3; Provisional	99.9
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.9
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.9
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.9
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.9
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.9
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.9
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.9
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.9
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.9
PHA03210	501	serine/threonine kinase US3; Provisional	99.9
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.9
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.9
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.9
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.9
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.9
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.9
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.9
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.9
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.9
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.9
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.9
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.9
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.9
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.9
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.9
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.9
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.9
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.9
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.9
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.9
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.89
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.89
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.89
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.89
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.89
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.89
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.89
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.89
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.89
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.89
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.89
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.89
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.89
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.89
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.89
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.89
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.89
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.89
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.89
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.89
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.89
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.89
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.89
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.89
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.89
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.89
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.89
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.89
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.89
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.89
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.89
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.89
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.89
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.89
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.89
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.89
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.89
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.89
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.89
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.89
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.89
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.89
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.89
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.89
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.89
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.89
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.89
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.89
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.88
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.88
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.88
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.88
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.88
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.88
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.88
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.88
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.88
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.88
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.88
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.88
KOG0586	596	consensus Serine/threonine protein kinase [General	99.88
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.88
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.88
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.88
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.88
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.88
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.88
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.88
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.88
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.88
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.88
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.88
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.88
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.88
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.88
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.88
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.88
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.88
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.88
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.88
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.88
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.88
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.88
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.88
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.88
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.88
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.88
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.88
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.88
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.88
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.88
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.88
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.88
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.88
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.88
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.88
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.87
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.87
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.87
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.87
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.87
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.87
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.87
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.87
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.87
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.87
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.87
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.87
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.87
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.87
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.87
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.87
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.87
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.87
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.87
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.87
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.87
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.87
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.87
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.87
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.87
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.87
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.87
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.87
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.87
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.87
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.87
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.87
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.87
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.87
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.87
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.87
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.87
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.87
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.87
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.87
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.87
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.87
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.87
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.87
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.87
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.87
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.87
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.87
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.87
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.87
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.87
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.87
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.87
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.87
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.87
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.86
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.86
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.86
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.86
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.86
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.86
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.86
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.86
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.86
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.86
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.86
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.86
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.86
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.86
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.86
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.86
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.86
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.86
KOG3653	534	consensus Transforming growth factor beta/activin	99.86
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.86
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.86
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.86
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.86
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.86
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.86
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.86
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.86
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.86
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.86
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.86
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.85
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.85
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.85
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.85
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.85
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.85
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.85
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.85
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.85
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.85
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.85
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.85
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.85
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.85
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.85
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.85
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.85
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.85
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.85
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.85
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.84
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.84
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.84
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.84
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.84
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.84
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.84
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.84
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.84
PLN00009	294	cyclin-dependent kinase A; Provisional	99.84
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.84
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.84
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.84
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.84
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.83
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.83
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.83
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.83
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.82
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.8
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.8
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.8
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.8
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.79
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.79
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.78
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.78
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.78
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.77
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.76
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.76
KOG1152	772	consensus Signal transduction serine/threonine kin	99.75
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.75
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.75
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.74
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.67
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.66
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.65
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.59
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.59
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.55
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.53
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.51
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.49
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.48
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.47
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.44
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.38
PRK09188	365	serine/threonine protein kinase; Provisional	99.37
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.33
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.33
PRK12274	218	serine/threonine protein kinase; Provisional	99.3
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.28
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.25
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.2
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.19
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.05
smart00090	237	RIO RIO-like kinase.	98.98
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.88
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.86
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.82
PRK14879	211	serine/threonine protein kinase; Provisional	98.79
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.78
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.75
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.75
PRK10345	210	hypothetical protein; Provisional	98.69
COG4248	637	Uncharacterized protein with protein kinase and he	98.61
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.59
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.51
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.39
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.31
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.28
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.27
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.22
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.15
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.12
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.1
KOG1243	690	consensus Protein kinase [General function predict	98.04
PRK09902	216	hypothetical protein; Provisional	97.77
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.75
KOG3087	229	consensus Serine/threonine protein kinase [General	97.7
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.55
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.32
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.86
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	96.84
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	96.82
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.81
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.34
COG0478	304	RIO-like serine/threonine protein kinase fused to	95.76
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	95.07
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.06
PRK05231	319	homoserine kinase; Provisional	95.06
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	94.92
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	94.86
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	94.57
PF01636	239	APH: Phosphotransferase enzyme family This family	94.39
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	94.09
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	93.71
COG2334	331	Putative homoserine kinase type II (protein kinase	93.69
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	93.59
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	93.55
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	93.38
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	93.24
KOG0576	829	consensus Mitogen-activated protein kinase kinase	93.16
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	92.84
COG0661	517	AarF Predicted unusual protein kinase [General fun	92.67
PRK10271	188	thiK thiamine kinase; Provisional	92.15
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	91.76
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	91.13
PRK06148	1013	hypothetical protein; Provisional	91.12
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	90.86
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	90.48
KOG1235	538	consensus Predicted unusual protein kinase [Genera	90.38
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	89.88
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	89.86
PLN02236	344	choline kinase	89.12
PRK11768	325	serine/threonine protein kinase; Provisional	89.02
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	88.73
PRK06149	972	hypothetical protein; Provisional	88.57
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	88.02
PHA03111	444	Ser/Thr kinase; Provisional	87.56
PRK09550	401	mtnK methylthioribose kinase; Reviewed	86.66
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	83.82
KOG2268	465	consensus Serine/threonine protein kinase [Signal	83.47
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	82.53
PRK10593	297	hypothetical protein; Provisional	81.11
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	80.44

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=247.68  Aligned_cols=181  Identities=28%  Similarity=0.416  Sum_probs=147.2

Q ss_pred             CCCcccc-ccccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcE
Q 042116            3 GKGNREI-EGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTA   81 (208)
Q Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~   81 (208)
                      |+|...- +....|||..+|.+.+.+...... .++|..|++||.++|+||+|||+.|+++|||||||++|||+|.++.+
T Consensus       138 GyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~a  216 (361)
T KOG1187|consen  138 GYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNA  216 (361)
T ss_pred             EEEecCCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCE
Confidence            5555555 478888888887666666655444 88999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCceecCCCCCceeeee-ecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhh
Q 042116           82 KISDFGLAKLLMPDQTRTFTLI-RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTY  160 (208)
Q Consensus        82 kl~dfg~~~~~~~~~~~~~~~~-~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~  160 (208)
                      ||+|||+++..... ....... .||.+|+|||+...+..+.++|||||||+++|++||+.+.+... ......+..|++
T Consensus       217 KlsDFGLa~~~~~~-~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~-~~~~~~l~~w~~  294 (361)
T KOG1187|consen  217 KLSDFGLAKLGPEG-DTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSR-PRGELSLVEWAK  294 (361)
T ss_pred             EccCccCcccCCcc-ccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCC-CcccccHHHHHH
Confidence            99999999765431 1111222 69999999999998889999999999999999999999887653 234445889999


Q ss_pred             hhhhhhhhhhcccCC----CCCH-HHHHHHH
Q 042116          161 KCFIDREFDKLVHGE----EVNK-KTLENMI  186 (208)
Q Consensus       161 ~~~~~~~~~~~~d~~----~~~~-~~~~~~~  186 (208)
                      ..+..+.+.+++|+.    .... +.+++++
T Consensus       295 ~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~  325 (361)
T KOG1187|consen  295 PLLEEGKLREIVDPRLKEGEYPDEKEVKKLA  325 (361)
T ss_pred             HHHHCcchhheeCCCccCCCCChHHHHHHHH
Confidence            999999999999988    2222 4666665

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=210.14  Aligned_cols=126  Identities=25%  Similarity=0.329  Sum_probs=107.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..+|.+|.++.+.   +.+++..+.-++.+|+.||.|||++   +||||||||+|||++..|+++|+|||+++....
T Consensus       104 ld~~~GGeLf~hL~~e---g~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~  177 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQRE---GRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDLK  177 (357)
T ss_pred             EeccCCccHHHHHHhc---CCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhccc
Confidence            4566777777776654   5667777778999999999999999   999999999999999999999999999986433


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ... .....+||+.|+|||++....|+..+|+||+|+++|||++|.+||...+
T Consensus       178 ~~~-~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~  229 (357)
T KOG0598|consen  178 DGD-ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED  229 (357)
T ss_pred             CCC-ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc
Confidence            322 2334679999999999999999999999999999999999999998663

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-30  Score=204.25  Aligned_cols=125  Identities=24%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|..+|..|.++.+.   .+++...++.+|.||+.||.|||+.   +|++|||||+|||+|++|.+||+|||+|+...
T Consensus       122 vmeyv~GGElFS~Lrk~---~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~  195 (355)
T KOG0616|consen  122 VMEYVPGGELFSYLRKS---GRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVS  195 (355)
T ss_pred             EEeccCCccHHHHHHhc---CCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEec
Confidence            34678888888877654   4677777789999999999999999   99999999999999999999999999998763


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      .    .....+||+.|+|||.+...+++.++|.|||||++|||+.|.+||...+.
T Consensus       196 ~----rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~  246 (355)
T KOG0616|consen  196 G----RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP  246 (355)
T ss_pred             C----cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh
Confidence            2    24566799999999999999999999999999999999999999986643

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.97  E-value=7.5e-30  Score=212.08  Aligned_cols=129  Identities=29%  Similarity=0.398  Sum_probs=108.4

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC-eEEeCCCCCcEEEcCCC-cEEEEecCCcee
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP-IIHCDIKPHNILMDEFW-TAKISDFGLAKL   91 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-iiHrdlk~~nill~~~~-~~kl~dfg~~~~   91 (208)
                      .-||..+|.+...+... ....+++..+++++.|||+|+.|||+.   + |||||||++|||++.++ ++||+|||+++.
T Consensus       118 VtEy~~~GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~  193 (362)
T KOG0192|consen  118 VTEYMPGGSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSRE  193 (362)
T ss_pred             EEEeCCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCcccee
Confidence            34555555555555443 778999999999999999999999998   6 99999999999999997 999999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhh--cCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSK--NTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~--~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ..... .......||+.|||||++.  ...|+.|+||||||+++|||+||+.||....
T Consensus       194 ~~~~~-~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~  250 (362)
T KOG0192|consen  194 KVISK-TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLA  250 (362)
T ss_pred             ecccc-ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCC
Confidence            64322 1222356999999999999  6689999999999999999999999998663

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=4.6e-30  Score=209.02  Aligned_cols=125  Identities=26%  Similarity=0.383  Sum_probs=108.0

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC------CcEEEEecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF------WTAKISDFG   87 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~------~~~kl~dfg   87 (208)
                      +-|||.+|.+-.++..++   .++..++..++.|+|.||++||++   +||||||||.|||++..      -.+||+|||
T Consensus        87 VMEyC~gGDLs~yi~~~~---~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFG  160 (429)
T KOG0595|consen   87 VMEYCNGGDLSDYIRRRG---RLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFG  160 (429)
T ss_pred             EEEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccc
Confidence            346777777776666553   788999999999999999999999   99999999999999765      458999999


Q ss_pred             CceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           88 LAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        88 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +++.+..+.  .....+|++.|||||++....|+.|+|+||.|+++|+|++|+.||...
T Consensus       161 fAR~L~~~~--~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  161 FARFLQPGS--MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             hhhhCCchh--HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            999885432  344567999999999999999999999999999999999999999844

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.4e-30  Score=210.90  Aligned_cols=129  Identities=32%  Similarity=0.424  Sum_probs=108.2

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC---CcEEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF---WTAKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~dfg~~~   90 (208)
                      +.||+++|.+|+.++..   +.+.......++.|++.|+.|||+.   ||+||||||+|||+..+   ..+||+|||+|+
T Consensus       254 VlE~v~GGeLfd~vv~n---k~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDFGlAK  327 (475)
T KOG0615|consen  254 VLEYVEGGELFDKVVAN---KYLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDFGLAK  327 (475)
T ss_pred             EEEEecCccHHHHHHhc---cccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEecccchhh
Confidence            56889999999988865   4555666678999999999999999   99999999999999776   779999999999


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhhcCCC---CccccchhHHHHHHHHHhcCcCCCCCCCCc
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSKNTPI---SMKANVFNYGVVLLEIVCCRRNMEIDPSKP  150 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~---~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~  150 (208)
                      ....  .....+.+||+.|.|||++.+..+   ..++|+||+||++|-+++|..||.......
T Consensus       328 ~~g~--~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~  388 (475)
T KOG0615|consen  328 VSGE--GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDP  388 (475)
T ss_pred             cccc--ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCc
Confidence            8642  333456779999999999976543   347899999999999999999998764444

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.96  E-value=8.7e-30  Score=205.34  Aligned_cols=119  Identities=27%  Similarity=0.391  Sum_probs=105.3

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR   98 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~   98 (208)
                      ++++++.+....  +++++...-+|+.++++||.|||+ +   +||||||||+|||+...|.+||||||.++.+...   
T Consensus       161 DgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS---  232 (364)
T KOG0581|consen  161 DGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS---  232 (364)
T ss_pred             CCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEeccccccHHhhhh---
Confidence            455666665543  778999999999999999999996 5   9999999999999999999999999999887544   


Q ss_pred             eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+...+||..|||||.+.+..|+.++||||||+.++|+.+|+.|+...
T Consensus       233 ~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  233 IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence            345667999999999999999999999999999999999999999865

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.96  E-value=2.6e-29  Score=210.70  Aligned_cols=127  Identities=25%  Similarity=0.397  Sum_probs=109.3

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +.+|..+|.++..+.+.   +.++....+.++.+|+.||+|||+.   |||||||||+|||++.+++++|+|||.++.+.
T Consensus       152 vLe~A~nGdll~~i~K~---Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK~l~  225 (604)
T KOG0592|consen  152 VLEYAPNGDLLDLIKKY---GSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAKILS  225 (604)
T ss_pred             EEEecCCCcHHHHHHHh---CcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccccCC
Confidence            45677788888777665   5677777779999999999999999   99999999999999999999999999999875


Q ss_pred             CCCCc----------e--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTR----------T--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~----------~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +....          .  ...++||..|.+||++.....+..+|+|+|||++|+|+.|.+||...
T Consensus       226 ~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~  290 (604)
T KOG0592|consen  226 PSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAA  290 (604)
T ss_pred             hhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccc
Confidence            32211          1  14477999999999999999999999999999999999999999754

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.7e-29  Score=209.18  Aligned_cols=127  Identities=26%  Similarity=0.368  Sum_probs=108.7

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCcee
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKL   91 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~   91 (208)
                      ...||+.+|.+|..+..+   +.+.+..+.+++.|++.|++|||+.   +|+||||||+|+|++.+ +.+||+|||++..
T Consensus        97 ivmEy~~gGdL~~~i~~~---g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~  170 (370)
T KOG0583|consen   97 IVMEYCSGGDLFDYIVNK---GRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGLSAI  170 (370)
T ss_pred             EEEEecCCccHHHHHHHc---CCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEeccccccc
Confidence            356788888888887763   4555588889999999999999999   99999999999999999 9999999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCC-C-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTP-I-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~-~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .........+||+.|+|||++.+.. | +.++||||+||++|.|++|+.||...
T Consensus       171 ~~-~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~  226 (370)
T KOG0583|consen  171 SP-GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDS  226 (370)
T ss_pred             cC-CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCc
Confidence            63 2223345567999999999999877 7 48899999999999999999999864

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.4e-29  Score=195.94  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=110.1

Q ss_pred             cceEEeCCCCcchHHHHh--hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEeCCCCCcEEEcCCCcEEEEecCC
Q 042116           13 RGCEVKGKRKQFGAVVRR--RENKEKESNLGLLLILPQPSCNVYLHNECEAP--IIHCDIKPHNILMDEFWTAKISDFGL   88 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~dfg~   88 (208)
                      +.+.-...++++..+.++  .+.+.++.+..++++.|+++||..+|.. .+.  |+||||||.||+++.+|.+||+|||+
T Consensus        96 nivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL  174 (375)
T KOG0591|consen   96 NIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFGL  174 (375)
T ss_pred             HHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccchh
Confidence            333334445555555544  3557889999999999999999999994 234  89999999999999999999999999


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+...... ....+|||.||+||.+...+|+.+|||||+||++|||..-++||.+.
T Consensus       175 ~r~l~s~~tf-A~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~  231 (375)
T KOG0591|consen  175 GRFLSSKTTF-AHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD  231 (375)
T ss_pred             HhHhcchhHH-HHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc
Confidence            9988655443 33456999999999999999999999999999999999999999866

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.7e-29  Score=210.26  Aligned_cols=165  Identities=23%  Similarity=0.350  Sum_probs=128.5

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      ..+++..+.+  ..+.+++.++..++.||+.||.|||+.   +|+|||||..|++++.+.++||+|||+|..+..+... 
T Consensus       101 ~~~sL~el~K--rrk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Er-  174 (592)
T KOG0575|consen  101 HRGSLMELLK--RRKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGER-  174 (592)
T ss_pred             CCccHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCcccc-
Confidence            4445556665  568899999999999999999999999   9999999999999999999999999999887544333 


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCcc--chhhhhhhhhhhhhh----hhhhccc
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE--EIVFINLTYKCFIDR----EFDKLVH  173 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~d  173 (208)
                      ..+.+||+.|.|||++.....+..+||||+||++|.|+.|++||....-.+.  .+...+...+...+.    -+.++++
T Consensus       175 k~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~  254 (592)
T KOG0575|consen  175 KKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLR  254 (592)
T ss_pred             cceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhc
Confidence            3456799999999999988889999999999999999999999985522221  122233333333332    2456677


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 042116          174 GEEVNKKTLENMIKSVV  190 (208)
Q Consensus       174 ~~~~~~~~~~~~~~~v~  190 (208)
                      +.+..++.+.+++....
T Consensus       255 ~~P~~Rpsl~~vL~h~F  271 (592)
T KOG0575|consen  255 PNPSERPSLDEVLDHPF  271 (592)
T ss_pred             CCcccCCCHHHHhcCHh
Confidence            77888888888875543

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.9e-29  Score=214.49  Aligned_cols=126  Identities=22%  Similarity=0.241  Sum_probs=109.4

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||..+|. +   +.......++...+..++..|+.||+|||++   +|||||||.+|||+|..|++||+|||+++..-
T Consensus       447 vmey~~Ggd-m---~~~~~~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  447 VMEYVAGGD-L---MHHIHTDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM  519 (694)
T ss_pred             EEEecCCCc-E---EEEEecccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEecccccccccC
Confidence            457777777 3   2344557888999999999999999999999   99999999999999999999999999998753


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      .. ....++.+||+.|+|||++....|+.++|+|||||++|||+.|..||.+++
T Consensus       520 ~~-g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gdd  572 (694)
T KOG0694|consen  520 GQ-GDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDD  572 (694)
T ss_pred             CC-CCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            22 224567789999999999999999999999999999999999999998763

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.5e-28  Score=205.97  Aligned_cols=126  Identities=26%  Similarity=0.362  Sum_probs=112.0

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ...||+.+|.+|++++.++   .++...+.+++.||+.|+.|+|..   +|+||||||+|+|++..+.+||+|||.|...
T Consensus        89 lvlEyv~gGELFdylv~kG---~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe  162 (786)
T KOG0588|consen   89 LVLEYVPGGELFDYLVRKG---PLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLE  162 (786)
T ss_pred             EEEEecCCchhHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeecc
Confidence            4678999999999999764   667777789999999999999999   9999999999999999999999999999876


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .++..  ..+-+|++.|+|||++.+.+| +.++||||+||+||.|+||+-||+.+
T Consensus       163 ~~gkl--LeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDd  215 (786)
T KOG0588|consen  163 VPGKL--LETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDD  215 (786)
T ss_pred             cCCcc--ccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCc
Confidence            55433  344569999999999999998 68999999999999999999999844

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.95  E-value=1e-27  Score=189.27  Aligned_cols=169  Identities=23%  Similarity=0.263  Sum_probs=126.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++.....+++.|++.|+.|+|++   ++|||||||+|||++.++.+||||||+|+.+... ....+.++.|.+|.||
T Consensus        95 p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~p-gd~YTDYVATRWYRaP  170 (396)
T KOG0593|consen   95 PNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAP-GDNYTDYVATRWYRAP  170 (396)
T ss_pred             cCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCC-cchhhhhhhhhhccCh
Confidence            35678888899999999999999999   9999999999999999999999999999987642 2334556689999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhhhhhhhh---------hhhhcccCCCCCHHHH
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDR---------EFDKLVHGEEVNKKTL  182 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~  182 (208)
                      |.+.+ ..|+..+||||+||++.||++|.+-|.+. ++-++...+......+..+         .+.-+.-|.....+.+
T Consensus       171 ELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~-SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epL  249 (396)
T KOG0593|consen  171 ELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGR-SDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPL  249 (396)
T ss_pred             hhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCc-chHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccch
Confidence            99877 78999999999999999999999999766 4445554444333322222         1222333333344444


Q ss_pred             HHHH----HHHHHHHhcCCCCCCCCCCC
Q 042116          183 ENMI----KSVVMMLEGITDISIPPCPT  206 (208)
Q Consensus       183 ~~~~----~~v~~~L~~~~~~~~p~~P~  206 (208)
                      ++-.    .-++..+.+...++|..|++
T Consensus       250 e~k~p~~s~~~ld~~k~cL~~dP~~R~s  277 (396)
T KOG0593|consen  250 ERKYPKISNVLLDLLKKCLKMDPDDRLS  277 (396)
T ss_pred             hhhcccchHHHHHHHHHHhcCCcccccc
Confidence            4333    44456777888888887765

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-27  Score=197.12  Aligned_cols=124  Identities=23%  Similarity=0.250  Sum_probs=109.4

Q ss_pred             eCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC
Q 042116           18 KGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      +....++..+++.+ +..++...++.|+.||++||+|+|++   |+.|||+||+|||+..+..+||+|||+||...+.. 
T Consensus        90 E~Md~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Skp-  164 (538)
T KOG0661|consen   90 EFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREVRSKP-  164 (538)
T ss_pred             HhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccccccCC-
Confidence            34556788888877 89999999999999999999999999   99999999999999988899999999999875433 


Q ss_pred             ceeeeeecCCCcCchhhh-hcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWS-KNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~-~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                       ..+.++.|.+|+|||++ +.+.|+.+.|+||+||+++|+.+-++.|.+.+
T Consensus       165 -PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~s  214 (538)
T KOG0661|consen  165 -PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGAS  214 (538)
T ss_pred             -CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCc
Confidence             35567789999999976 56678999999999999999999999998663

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.94  E-value=1.5e-27  Score=199.93  Aligned_cols=165  Identities=19%  Similarity=0.193  Sum_probs=123.1

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC-----
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-----   95 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~-----   95 (208)
                      |+.+.-|+.  ....++...+..++.+.+.|+..+|+.   |+|||||||+|+|+|..|++||+|||++..+...     
T Consensus       225 GGD~mTLL~--~~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~  299 (550)
T KOG0605|consen  225 GGDMMTLLM--RKDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIES  299 (550)
T ss_pred             CccHHHHHH--hcCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccchhhhhhhhhh
Confidence            444444443  345678888889999999999999999   9999999999999999999999999998643210     


Q ss_pred             ------------------CC-----c------------------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHH
Q 042116           96 ------------------QT-----R------------------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLL  134 (208)
Q Consensus        96 ------------------~~-----~------------------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~  134 (208)
                                        ..     .                  .....+|||-|+|||++.+..|+..+|+||+||++|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~Imy  379 (550)
T KOG0605|consen  300 YRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMY  379 (550)
T ss_pred             hcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHH
Confidence                              00     0                  001134999999999999999999999999999999


Q ss_pred             HHHhcCcCCCCCCCCccchhhhhhhhhhhhhhhhhhcccCCCCCHHHHHHHHHHHHHHHh
Q 042116          135 EIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLE  194 (208)
Q Consensus       135 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~L~  194 (208)
                      ||+.|.+||+.+.....-..+.+|.......    +-.+.++.....+.+++.++-+.|-
T Consensus       380 EmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP----~~~~~s~eA~DLI~rll~d~~~RLG  435 (550)
T KOG0605|consen  380 EMLVGYPPFCSETPQETYRKIVNWRETLKFP----EEVDLSDEAKDLITRLLCDPENRLG  435 (550)
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhhhccCC----CcCcccHHHHHHHHHHhcCHHHhcC
Confidence            9999999999886555555666775332221    1112224445666777777777776

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.4e-26  Score=192.94  Aligned_cols=111  Identities=24%  Similarity=0.286  Sum_probs=100.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      .-.++...+..++.|++.||.|||..   +|+|||||.+|||++.+|.+||+|||+|+.+........+..+-|.+|.||
T Consensus       212 ~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpP  288 (560)
T KOG0600|consen  212 GVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPP  288 (560)
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccCh
Confidence            44788999999999999999999999   999999999999999999999999999998877666556666679999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..|+...|+||.||++.||++|++.|.+.
T Consensus       289 ELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~  323 (560)
T KOG0600|consen  289 ELLLGATSYGTAVDLWSVGCILAELFLGKPILQGR  323 (560)
T ss_pred             HHhcCCcccccceeehhhhHHHHHHHcCCCCcCCc
Confidence            98875 46899999999999999999999999765

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=3.3e-27  Score=198.93  Aligned_cols=125  Identities=24%  Similarity=0.317  Sum_probs=108.2

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||..+|. +.+++..   ..+++..+..|++++++||.|||..   +|+|||||.+|||++.++.+||+|||+|..+.
T Consensus       348 VMEym~ggs-LTDvVt~---~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~  420 (550)
T KOG0578|consen  348 VMEYMEGGS-LTDVVTK---TRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQIS  420 (550)
T ss_pred             EEeecCCCc-hhhhhhc---ccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccc
Confidence            456666666 5555543   4588999999999999999999999   99999999999999999999999999998876


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...... ...+||+.|||||++....|+.+.||||||++.+||+.|.+||..+
T Consensus       421 ~~~~KR-~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE  472 (550)
T KOG0578|consen  421 EEQSKR-STMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNE  472 (550)
T ss_pred             cccCcc-ccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCC
Confidence            655433 3345999999999999999999999999999999999999999865

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=3.6e-27  Score=197.55  Aligned_cols=127  Identities=28%  Similarity=0.283  Sum_probs=104.6

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +-||...|.++++|.. .+...+.....+.++.|||+|++||.++   ++|||||...|||++.+..+||+|||+++...
T Consensus       279 VtE~m~~GsLl~yLr~-~~~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  279 VTEYMPKGSLLDYLRT-REGGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             EEEecccCcHHHHhhh-cCCCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccC
Confidence            3456667777777665 6777888999999999999999999999   99999999999999999999999999999543


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNME  144 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~  144 (208)
                      .+.........-...|.|||.+..+.|+.+||||||||+|||++| |+.|+.
T Consensus       355 d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~  406 (468)
T KOG0197|consen  355 DDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYP  406 (468)
T ss_pred             CCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCC
Confidence            333222222223567999999999999999999999999999999 556654

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-27  Score=193.46  Aligned_cols=125  Identities=28%  Similarity=0.429  Sum_probs=101.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~   94 (208)
                      ||+.+| ++..+..+... .++...+++++.||++||.|||++   +|+||||||+|||++. ++.+||+|||+++....
T Consensus        96 Ey~~~G-sL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen   96 EYAPGG-SLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             eccCCC-cHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCcccccccc
Confidence            444444 44455544444 799999999999999999999999   9999999999999999 79999999999887653


Q ss_pred             --CCCceeeeeecCCCcCchhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCC
Q 042116           95 --DQTRTFTLIRGTRGYMAPEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        95 --~~~~~~~~~~g~~~y~aPE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                        ..........||+.|||||++..+. ...++||||+||++.||+||+.||..
T Consensus       171 ~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~  224 (313)
T KOG0198|consen  171 KGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSE  224 (313)
T ss_pred             ccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchh
Confidence              1112233466999999999998643 34599999999999999999999975

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.94  E-value=2.6e-26  Score=185.86  Aligned_cols=119  Identities=19%  Similarity=0.272  Sum_probs=100.8

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....  .....
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~  168 (290)
T cd07862          94 DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTS  168 (290)
T ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccccceEeccCC--ccccc
Confidence            344444444455688999999999999999999998   9999999999999999999999999999765432  12233


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..|+..|+|||.+....++.++|+|||||++|+|++|+.||...
T Consensus       169 ~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  212 (290)
T cd07862         169 VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  212 (290)
T ss_pred             ccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCC
Confidence            45899999999998888999999999999999999999999755

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.94  E-value=5.2e-26  Score=188.29  Aligned_cols=109  Identities=25%  Similarity=0.265  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .+++.....++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........ ......++..|+|||
T Consensus       170 ~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE  246 (338)
T cd05102         170 PLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPE  246 (338)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcH
Confidence            477888899999999999999998   9999999999999999999999999999765332211 112223567899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ++.+..++.++|||||||++|||++ |..||...
T Consensus       247 ~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~  280 (338)
T cd05102         247 SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  280 (338)
T ss_pred             HhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCC
Confidence            9988889999999999999999997 99998754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.94  E-value=3e-26  Score=189.38  Aligned_cols=126  Identities=20%  Similarity=0.255  Sum_probs=102.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.++..+..   ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus        84 ~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~  157 (332)
T cd05614          84 LDYVSGGEMFTHLYQ---RDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSKEFLS  157 (332)
T ss_pred             EeCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCccccc
Confidence            355555555555433   34578888999999999999999998   999999999999999999999999999876543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..........||..|+|||++.+. .++.++|||||||++|+|++|+.||...
T Consensus       158 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  210 (332)
T cd05614         158 EEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLE  210 (332)
T ss_pred             cCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCC
Confidence            333223344689999999998764 4788999999999999999999999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-26  Score=202.11  Aligned_cols=183  Identities=17%  Similarity=0.178  Sum_probs=138.3

Q ss_pred             ccccccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecC
Q 042116            8 EIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFG   87 (208)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg   87 (208)
                      ..|....-|||.++++.+.+-.+.... ++..++++|+.|+++|+++||.. +++|||||||.+|||++.++..||||||
T Consensus       114 ~~EvllLmEyC~gg~Lvd~mn~Rlq~~-lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFG  191 (738)
T KOG1989|consen  114 VWEVLLLMEYCKGGSLVDFMNTRLQTR-LTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFG  191 (738)
T ss_pred             eeEEEeehhhccCCcHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccc
Confidence            467777788898888887776665555 99999999999999999999986 7899999999999999999999999999


Q ss_pred             CceecCCCCCcee--------eeeecCCCcCchhhh---hcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhh
Q 042116           88 LAKLLMPDQTRTF--------TLIRGTRGYMAPEWS---KNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI  156 (208)
Q Consensus        88 ~~~~~~~~~~~~~--------~~~~g~~~y~aPE~~---~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~  156 (208)
                      .+...........        .....|+.|++||++   .+.+++.|+|||||||+||-|+....||....  .-.+.-.
T Consensus       192 Satt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg--~laIlng  269 (738)
T KOG1989|consen  192 SATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG--KLAILNG  269 (738)
T ss_pred             ccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc--ceeEEec
Confidence            9865322221000        011268999999987   46678999999999999999999999997441  2223222


Q ss_pred             hhhhh------hhhhhhhhhcccCCCCCHHHHHHHHHHHHHHHh
Q 042116          157 NLTYK------CFIDREFDKLVHGEEVNKKTLENMIKSVVMMLE  194 (208)
Q Consensus       157 ~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~L~  194 (208)
                      ++.++      .....-+..++.+.+..+..+.+++.++..|..
T Consensus       270 ~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~  313 (738)
T KOG1989|consen  270 NYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELAN  313 (738)
T ss_pred             cccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhc
Confidence            33222      223334566677777777888888877776664

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.93  E-value=1.3e-25  Score=181.94  Aligned_cols=125  Identities=23%  Similarity=0.286  Sum_probs=102.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+ ...........+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||++......
T Consensus        80 e~~~~g~L-~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~  155 (285)
T cd05631          80 TIMNGGDL-KFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG  155 (285)
T ss_pred             EecCCCcH-HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCC
Confidence            34444444 3333333445688999999999999999999998   9999999999999999999999999999875332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..  .....|+..|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       156 ~~--~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  204 (285)
T cd05631         156 ET--VRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKR  204 (285)
T ss_pred             Ce--ecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCC
Confidence            21  22345899999999999889999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.93  E-value=3.3e-26  Score=191.53  Aligned_cols=125  Identities=23%  Similarity=0.270  Sum_probs=100.9

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+..   ...++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~  154 (363)
T cd05628          81 EFLPGGDMMTLLMK---KDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKA  154 (363)
T ss_pred             cCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCccccccc
Confidence            34444444444332   35688899999999999999999998   9999999999999999999999999998754221


Q ss_pred             CC----------------------------------ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCc
Q 042116           96 QT----------------------------------RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRR  141 (208)
Q Consensus        96 ~~----------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~  141 (208)
                      ..                                  ......+||+.|+|||++.+..++.++|+|||||++|+|++|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~  234 (363)
T cd05628         155 HRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP  234 (363)
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCC
Confidence            10                                  00123458999999999998889999999999999999999999


Q ss_pred             CCCCC
Q 042116          142 NMEID  146 (208)
Q Consensus       142 p~~~~  146 (208)
                      ||...
T Consensus       235 Pf~~~  239 (363)
T cd05628         235 PFCSE  239 (363)
T ss_pred             CCCCC
Confidence            99754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.93  E-value=1.4e-25  Score=185.22  Aligned_cols=109  Identities=23%  Similarity=0.341  Sum_probs=95.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+|||
T Consensus        91 ~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE  166 (327)
T cd05617          91 RKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD-TTSTFCGTPNYIAPE  166 (327)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCC-ceecccCCcccCCHH
Confidence            4689999999999999999999998   999999999999999999999999999875322211 223345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++|+|||||++|+|++|+.||...
T Consensus       167 ~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~  199 (327)
T cd05617         167 ILRGEEYGFSVDWWALGVLMFEMMAGRSPFDII  199 (327)
T ss_pred             HHCCCCCCchheeehhHHHHHHHHhCCCCCCcc
Confidence            999888999999999999999999999999653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.93  E-value=1.7e-25  Score=182.17  Aligned_cols=109  Identities=22%  Similarity=0.250  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc------eeeeeecCCC
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR------TFTLIRGTRG  108 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~------~~~~~~g~~~  108 (208)
                      ..++.....++.|++.||+|||+.   +|+||||||+|||++.++.++|+|||+++........      ......||+.
T Consensus       122 ~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~  198 (294)
T PHA02882        122 CKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLY  198 (294)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCcc
Confidence            356777889999999999999998   9999999999999999999999999999876432211      1122358999


Q ss_pred             cCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||...+..++.++|||||||++|+|++|+.||...
T Consensus       199 y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~  236 (294)
T PHA02882        199 YAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGF  236 (294)
T ss_pred             ccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            99999999888999999999999999999999999765

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=5.6e-26  Score=182.77  Aligned_cols=109  Identities=25%  Similarity=0.348  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .++...+..++.|+++||.|+|+.   +|+||||||+|++++.+...||+|||+|+........ ..+..+.|.+|.|||
T Consensus       121 ~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPE  197 (359)
T KOG0660|consen  121 DLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPE  197 (359)
T ss_pred             cccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHH
Confidence            388899999999999999999999   9999999999999999999999999999987543111 224566799999999


Q ss_pred             hhh-cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSK-NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~-~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+. ...|+...||||.||++.||++|+.-|.+.
T Consensus       198 lll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~  231 (359)
T KOG0660|consen  198 LLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGK  231 (359)
T ss_pred             HHhccccccchhhhhhhhHHHHHHHcCCCCCCCC
Confidence            774 467899999999999999999999999765

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.93  E-value=8.8e-26  Score=186.07  Aligned_cols=124  Identities=24%  Similarity=0.312  Sum_probs=101.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+.   ....+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~~g~L~~~~~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~  154 (323)
T cd05616          81 EYVNGGDLMYQIQ---QVGRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWD  154 (323)
T ss_pred             cCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCCC
Confidence            4445454443332   234678889999999999999999998   9999999999999999999999999998754322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       155 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~  204 (323)
T cd05616         155 GV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  204 (323)
T ss_pred             CC-ccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC
Confidence            21 223345899999999999989999999999999999999999999754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.9e-26  Score=187.85  Aligned_cols=123  Identities=24%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             eCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC
Q 042116           18 KGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      +++|.+-.++...++ ..++...++.++.+|+.||..||+.   .||+||+||+|||+|+.|+++|+|+|+|..+..+..
T Consensus       267 MNGGDLkfHiyn~g~-~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~  342 (591)
T KOG0986|consen  267 MNGGDLKFHIYNHGN-PGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKP  342 (591)
T ss_pred             ecCCceeEEeeccCC-CCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEecCCCCc
Confidence            455555556665544 7888999999999999999999999   999999999999999999999999999998866554


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .  ...+||.+|||||++.+..|+...|.||+||++|||+.|+.||...
T Consensus       343 ~--~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~  389 (591)
T KOG0986|consen  343 I--RGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQR  389 (591)
T ss_pred             c--ccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhh
Confidence            3  3336999999999999999999999999999999999999999755

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-26  Score=195.46  Aligned_cols=124  Identities=30%  Similarity=0.342  Sum_probs=107.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      -|||..|+++.-|-   ....++....+.+..+||.|++|||.+   .|||||||..||||..+-.+||+|||-++....
T Consensus       191 MEfCa~GqL~~VLk---a~~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~  264 (904)
T KOG4721|consen  191 MEFCAQGQLYEVLK---AGRPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSD  264 (904)
T ss_pred             eeccccccHHHHHh---ccCccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhh
Confidence            36777777765433   345778888999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .  .+...+.||..|||||++++.+.+.|+|||||||+||||+||..||...
T Consensus       265 ~--STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV  314 (904)
T KOG4721|consen  265 K--STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV  314 (904)
T ss_pred             h--hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence            3  3344567999999999999999999999999999999999999998754

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.93  E-value=1.6e-25  Score=179.95  Aligned_cols=122  Identities=24%  Similarity=0.310  Sum_probs=101.4

Q ss_pred             CcchHHHHhhhc--cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce
Q 042116           22 KQFGAVVRRREN--KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        22 ~~~~~l~~~~~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      ..+...+.....  ..++...+..+..|+++||+|||++   +|+||||||.||+++.+|.+||+|||+|+...-.. ..
T Consensus       101 ~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~-~~  176 (323)
T KOG0594|consen  101 RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLARAFSIPM-RT  176 (323)
T ss_pred             ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchHHHhcCCc-cc
Confidence            344444444433  4677788999999999999999999   99999999999999999999999999998664222 22


Q ss_pred             eeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ..+.++|.+|.|||++.+. .|+...||||+||++.||++++.-|....
T Consensus       177 yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~s  225 (323)
T KOG0594|consen  177 YTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDS  225 (323)
T ss_pred             ccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCc
Confidence            4556689999999998766 68999999999999999999998887663

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-25  Score=172.46  Aligned_cols=125  Identities=25%  Similarity=0.340  Sum_probs=105.6

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~   90 (208)
                      .|+++.++.+|.+++.+--   .++..+-..++||+.||.|+|..   +|+|||+||+|+++..   ..-+||+|||++.
T Consensus        88 vFe~m~G~dl~~eIV~R~~---ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi  161 (355)
T KOG0033|consen   88 VFDLVTGGELFEDIVAREF---YSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAI  161 (355)
T ss_pred             EEecccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEE
Confidence            5777888999999998733   33444557899999999999999   9999999999999954   3448999999998


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  ........||+.|+|||+++..+|+..+|||+.||++|-++.|+.||..+
T Consensus       162 ~l~~--g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~  215 (355)
T KOG0033|consen  162 EVND--GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  215 (355)
T ss_pred             EeCC--ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc
Confidence            8762  22334556999999999999999999999999999999999999999864

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.93  E-value=2.9e-25  Score=179.48  Aligned_cols=111  Identities=23%  Similarity=0.301  Sum_probs=96.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++...............|+..|+||
T Consensus        94 ~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  170 (287)
T cd07848          94 PNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSP  170 (287)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCc
Confidence            35688889999999999999999998   999999999999999999999999999987643332223334588999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+||+||++|+|++|+.||...
T Consensus       171 E~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~  204 (287)
T cd07848         171 ELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGE  204 (287)
T ss_pred             HHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCC
Confidence            9998888999999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.93  E-value=9e-26  Score=193.10  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=108.9

Q ss_pred             ccceEEeC-CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC--cEEEEecCC
Q 042116           12 ERGCEVKG-KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW--TAKISDFGL   88 (208)
Q Consensus        12 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~--~~kl~dfg~   88 (208)
                      .|.|.+.. -..++.++.+......++......++.||+.||.+||+.   +|||+||||+|||+...+  .+||+|||.
T Consensus       261 ~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  261 NHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             cceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEeccc
Confidence            34555554 344788888999999999999999999999999999999   999999999999996543  589999999


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +......    ....+-+..|+|||++.+.+|+.+.|||||||++.||++|.+.|.++
T Consensus       338 Sc~~~q~----vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  338 SCFESQR----VYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             ccccCCc----ceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            9875222    22556788999999999999999999999999999999997777655

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.93  E-value=1.1e-25  Score=185.53  Aligned_cols=125  Identities=25%  Similarity=0.324  Sum_probs=101.6

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.++..+.   ....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        74 ~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~  147 (323)
T cd05571          74 MEYANGGELFFHLS---RERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             EeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCccccc
Confidence            34444544444433   235678888899999999999999999   999999999999999999999999999875322


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......||+.|+|||++.+..++.++|+||+||++|+|++|+.||...
T Consensus       148 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  198 (323)
T cd05571         148 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             CCC-cccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCC
Confidence            211 223345899999999999888999999999999999999999999643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.4e-25  Score=180.87  Aligned_cols=175  Identities=22%  Similarity=0.283  Sum_probs=124.5

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      .++++.+++...-...+++..+..|+++++.||.|||+.   |-||||||+.|||++.+|.+||+|||.+-.+.....+.
T Consensus       107 a~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~  183 (516)
T KOG0582|consen  107 AGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQ  183 (516)
T ss_pred             cCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeeecccCcee
Confidence            345666777777777799999999999999999999999   99999999999999999999999999886654433321


Q ss_pred             ---eeeeecCCCcCchhhhh--cCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhhhhhhhhhhhhcccC
Q 042116          100 ---FTLIRGTRGYMAPEWSK--NTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHG  174 (208)
Q Consensus       100 ---~~~~~g~~~y~aPE~~~--~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  174 (208)
                         .....||+.|+|||++.  ...|+.|+||||||++..|+.+|..||...+.  -...+..      .++....+. .
T Consensus       184 ~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pP--mkvLl~t------Lqn~pp~~~-t  254 (516)
T KOG0582|consen  184 VTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPP--MKVLLLT------LQNDPPTLL-T  254 (516)
T ss_pred             eEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCCh--HHHHHHH------hcCCCCCcc-c
Confidence               13457999999999953  34589999999999999999999999975521  1111111      111111111 1


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 042116          175 EEVNKKTLENMIKSVVMMLEGITDISIPPCPT  206 (208)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~L~~~~~~~~p~~P~  206 (208)
                      ...+.++.++.-+.+-.|......-++.+||+
T Consensus       255 ~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRpt  286 (516)
T KOG0582|consen  255 SGLDKDEDKKFSKSFREMIALCLVKDPSKRPT  286 (516)
T ss_pred             ccCChHHhhhhcHHHHHHHHHHhhcCcccCCC
Confidence            22333333333355555565666666666765

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.93  E-value=4e-25  Score=182.77  Aligned_cols=123  Identities=22%  Similarity=0.316  Sum_probs=100.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+.   ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        76 E~~~~~~L~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~  149 (329)
T cd05618          76 EYVNGGDLMFHMQ---RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP  149 (329)
T ss_pred             eCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCC
Confidence            4444444433332   335688999999999999999999998   9999999999999999999999999998753222


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      .. ......||..|+|||++.+..++.++|+|||||++|+|++|+.||..
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         150 GD-TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             CC-ccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence            11 12234589999999999988899999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.93  E-value=2.1e-25  Score=183.44  Aligned_cols=110  Identities=25%  Similarity=0.336  Sum_probs=95.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++......++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++...... .......||+.|+||
T Consensus        90 ~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aP  165 (316)
T cd05592          90 SGRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE-GKASTFCGTPDYIAP  165 (316)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC-CccccccCCccccCH
Confidence            34688888899999999999999998   99999999999999999999999999997643322 222334589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+|||||++|+|++|+.||...
T Consensus       166 E~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~  199 (316)
T cd05592         166 EILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE  199 (316)
T ss_pred             HHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC
Confidence            9999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.93  E-value=3.2e-25  Score=182.85  Aligned_cols=110  Identities=24%  Similarity=0.338  Sum_probs=95.4

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........ ......||+.|+||
T Consensus        95 ~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~gt~~y~aP  170 (324)
T cd05587          95 VGKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK-TTRTFCGTPDYIAP  170 (324)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC-ceeeecCCccccCh
Confidence            34678889999999999999999998   999999999999999999999999999875322211 22344589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+||+||++|+|++|+.||...
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (324)
T cd05587         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  204 (324)
T ss_pred             hhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            9999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.93  E-value=2.2e-25  Score=187.34  Aligned_cols=110  Identities=22%  Similarity=0.293  Sum_probs=94.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..............||+.|+|||
T Consensus       137 ~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE  213 (371)
T cd05622         137 YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPE  213 (371)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHH
Confidence            3578888889999999999999999   9999999999999999999999999999876433322233456899999999


Q ss_pred             hhhcCC----CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTP----ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~----~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++....    ++.++|+|||||++|+|++|+.||...
T Consensus       214 ~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             HHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            987543    788999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.93  E-value=2.9e-25  Score=186.50  Aligned_cols=110  Identities=22%  Similarity=0.303  Sum_probs=94.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++...............||+.|+|||
T Consensus       137 ~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE  213 (370)
T cd05621         137 YDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPE  213 (370)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHH
Confidence            3578888899999999999999998   9999999999999999999999999999876433322233456899999999


Q ss_pred             hhhcCC----CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTP----ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~----~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+....    ++.++|+||+||++|+|++|+.||...
T Consensus       214 ~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         214 VLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             HHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            987543    678999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.8e-25  Score=185.35  Aligned_cols=126  Identities=25%  Similarity=0.263  Sum_probs=102.7

Q ss_pred             ceEEeCCCCcchHHHHhhhccC-CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           14 GCEVKGKRKQFGAVVRRRENKE-KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ++||++.|...+    ....+. +...+++++++++..||.|||.+   +||||||||+|+|++.+|++||+|||.+...
T Consensus       188 Vley~s~G~v~w----~p~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~~g~VKIsDFGVs~~~  260 (576)
T KOG0585|consen  188 VLEYCSKGEVKW----CPPDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSSDGTVKISDFGVSNEF  260 (576)
T ss_pred             EEEeccCCcccc----CCCCcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcCCCcEEeeccceeeec
Confidence            466777666544    344455 89999999999999999999999   9999999999999999999999999999766


Q ss_pred             CCCCC----ceeeeeecCCCcCchhhhhcCC----CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQT----RTFTLIRGTRGYMAPEWSKNTP----ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~----~~~~~~~g~~~y~aPE~~~~~~----~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..+..    .......||+.|+|||.+..+.    .+.+.||||+||+||.++.|+.||..+
T Consensus       261 ~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~  322 (576)
T KOG0585|consen  261 PQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD  322 (576)
T ss_pred             ccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc
Confidence            33211    1122346999999999987632    267889999999999999999999755

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.6e-25  Score=182.44  Aligned_cols=124  Identities=24%  Similarity=0.282  Sum_probs=101.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+..   ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||+++.....
T Consensus        73 e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~  146 (312)
T cd05585          73 AFINGGELFHHLQR---EGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKD  146 (312)
T ss_pred             cCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccC
Confidence            34444444444432   34678888899999999999999998   9999999999999999999999999998754322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......||+.|+|||.+.+..++.++|+||+||++|+|++|+.||...
T Consensus       147 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~  196 (312)
T cd05585         147 DD-KTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDE  196 (312)
T ss_pred             CC-ccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCC
Confidence            21 223345899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.92  E-value=2.3e-25  Score=184.11  Aligned_cols=125  Identities=26%  Similarity=0.324  Sum_probs=101.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||..++.++..+.   ....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        74 ~Ey~~~g~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~  147 (328)
T cd05593          74 MEYVNGGELFFHLS---RERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT  147 (328)
T ss_pred             EeCCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCC
Confidence            34555554444433   234688899999999999999999998   999999999999999999999999999875322


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       148 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~  198 (328)
T cd05593         148 DA-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (328)
T ss_pred             cc-cccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCC
Confidence            21 1223345899999999998888999999999999999999999999644

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.92  E-value=5.5e-26  Score=177.57  Aligned_cols=123  Identities=27%  Similarity=0.389  Sum_probs=105.6

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .++.+..|.+|++|...   -.++.....+|+.|+..|+.|||..   +|+||||||+|||++++.++||+|||++..+.
T Consensus       101 VFdl~prGELFDyLts~---VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isDFGFa~~l~  174 (411)
T KOG0599|consen  101 VFDLMPRGELFDYLTSK---VTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISDFGFACQLE  174 (411)
T ss_pred             hhhhcccchHHHHhhhh---eeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEeccceeeccC
Confidence            45667778888877654   4567777789999999999999999   99999999999999999999999999999886


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcC------CCCccccchhHHHHHHHHHhcCcCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNT------PISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~------~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ++..  ....+||++|.|||.+...      .|+...|+||+||++|.++.|.+||.
T Consensus       175 ~Gek--LrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFw  229 (411)
T KOG0599|consen  175 PGEK--LRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFW  229 (411)
T ss_pred             Cchh--HHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchh
Confidence            6554  3455799999999988642      46788999999999999999999986

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=1.7e-24  Score=183.13  Aligned_cols=110  Identities=25%  Similarity=0.320  Sum_probs=95.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..............||+.|+|||
T Consensus       177 ~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE  253 (391)
T PHA03212        177 RNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPE  253 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChh
Confidence            4678899999999999999999998   9999999999999999999999999998654322222233446899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++|+|||||++|+|++|+.|+...
T Consensus       254 ~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~  286 (391)
T PHA03212        254 LLARDPYGPAVDIWSAGIVLFEMATCHDSLFEK  286 (391)
T ss_pred             hhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCc
Confidence            998888999999999999999999999887643

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.92  E-value=3.6e-25  Score=183.12  Aligned_cols=127  Identities=20%  Similarity=0.276  Sum_probs=101.6

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.+...+..  ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++.....
T Consensus        80 ~ey~~~g~L~~~l~~--~~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~  154 (332)
T cd05623          80 MDYYVGGDLLTLLSK--FEDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  154 (332)
T ss_pred             EeccCCCcHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheeccc
Confidence            344555544444432  234678888899999999999999998   999999999999999999999999999876543


Q ss_pred             CCCceeeeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..........||+.|+|||++.     ...++.++|+|||||++|+|++|+.||...
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         155 DGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             CCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence            3332233345899999999986     345788999999999999999999999754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.92  E-value=1.5e-25  Score=188.79  Aligned_cols=125  Identities=24%  Similarity=0.285  Sum_probs=99.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+..   ...++......++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++......
T Consensus        81 E~~~gg~L~~~l~~---~~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~  154 (382)
T cd05625          81 DYIPGGDMMSLLIR---MGIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (382)
T ss_pred             eCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCcccccc
Confidence            44445444443332   24578888889999999999999998   9999999999999999999999999997532100


Q ss_pred             CC----------------------------------------------ceeeeeecCCCcCchhhhhcCCCCccccchhH
Q 042116           96 QT----------------------------------------------RTFTLIRGTRGYMAPEWSKNTPISMKANVFNY  129 (208)
Q Consensus        96 ~~----------------------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~  129 (208)
                      ..                                              .......||+.|+|||++.+..++.++|+||+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSl  234 (382)
T cd05625         155 HDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV  234 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEec
Confidence            00                                              00112358999999999998889999999999


Q ss_pred             HHHHHHHHhcCcCCCCC
Q 042116          130 GVVLLEIVCCRRNMEID  146 (208)
Q Consensus       130 Gv~l~el~tg~~p~~~~  146 (208)
                      ||++|||++|+.||...
T Consensus       235 Gvil~elltG~~Pf~~~  251 (382)
T cd05625         235 GVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             hHHHHHHHhCCCCCCCC
Confidence            99999999999999755

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.92  E-value=3e-25  Score=182.76  Aligned_cols=124  Identities=23%  Similarity=0.306  Sum_probs=100.9

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+.   ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        76 E~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~  149 (321)
T cd05591          76 EYVNGGDLMFQIQ---RSRKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILN  149 (321)
T ss_pred             eCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccC
Confidence            4444444433332   234678888899999999999999999   9999999999999999999999999998754322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......|++.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~  199 (321)
T cd05591         150 GV-TTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD  199 (321)
T ss_pred             Cc-cccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC
Confidence            22 122345899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.92  E-value=8.1e-25  Score=180.91  Aligned_cols=109  Identities=23%  Similarity=0.364  Sum_probs=95.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++....... ......||..|+||
T Consensus        90 ~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~gt~~y~aP  165 (329)
T cd05588          90 QRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD-TTSTFCGTPNYIAP  165 (329)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCC-ccccccCCccccCH
Confidence            35789999999999999999999998   999999999999999999999999999875322111 22334589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      |++.+..++.++|+|||||++|+|++|+.||..
T Consensus       166 E~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         166 EILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             HHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            999988899999999999999999999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.92  E-value=2e-25  Score=188.07  Aligned_cols=127  Identities=23%  Similarity=0.255  Sum_probs=100.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+..   ...+++.....++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        80 ~E~~~gg~L~~~l~~---~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~  153 (381)
T cd05626          80 MDYIPGGDMMSLLIR---MEVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRW  153 (381)
T ss_pred             EecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCccccc
Confidence            344555544444332   34578888888999999999999998   999999999999999999999999998754311


Q ss_pred             CCC----------------------------------------------ceeeeeecCCCcCchhhhhcCCCCccccchh
Q 042116           95 DQT----------------------------------------------RTFTLIRGTRGYMAPEWSKNTPISMKANVFN  128 (208)
Q Consensus        95 ~~~----------------------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s  128 (208)
                      ...                                              .......||+.|+|||++.+..++.++||||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (381)
T cd05626         154 THNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWS  233 (381)
T ss_pred             ccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceee
Confidence            000                                              0011235899999999998888999999999


Q ss_pred             HHHHHHHHHhcCcCCCCCC
Q 042116          129 YGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       129 ~Gv~l~el~tg~~p~~~~~  147 (208)
                      |||++|||++|+.||....
T Consensus       234 lG~il~elltG~~Pf~~~~  252 (381)
T cd05626         234 VGVILFEMLVGQPPFLAPT  252 (381)
T ss_pred             hhhHHHHHHhCCCCCcCCC
Confidence            9999999999999997653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.92  E-value=1.4e-25  Score=189.50  Aligned_cols=111  Identities=30%  Similarity=0.474  Sum_probs=101.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      .++.+++.....++.++..||.|||+.   +|+|||+||.|||++.++.+|++|||+++..... +.......||+.|||
T Consensus        93 ~d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~-t~vltsikGtPlYmA  168 (808)
T KOG0597|consen   93 QDGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN-TSVLTSIKGTPLYMA  168 (808)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccC-ceeeeeccCcccccC
Confidence            457888999999999999999999999   9999999999999999999999999999987543 334456679999999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+..++|+..+|.||+||++||+++|++||...
T Consensus       169 PElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~  203 (808)
T KOG0597|consen  169 PELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR  203 (808)
T ss_pred             HHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH
Confidence            99999999999999999999999999999999754

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.92  E-value=3e-25  Score=184.44  Aligned_cols=121  Identities=26%  Similarity=0.333  Sum_probs=100.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+... ..  ....+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||++......
T Consensus       111 Ey~~~g~L~~~-i~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~  184 (340)
T PTZ00426        111 EFVIGGEFFTF-LR--RNKRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR  184 (340)
T ss_pred             eCCCCCcHHHH-HH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecCCC
Confidence            44444444433 33  234688888999999999999999999   9999999999999999999999999999875322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          .....||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       185 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  231 (340)
T PTZ00426        185 ----TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN  231 (340)
T ss_pred             ----cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence                12345899999999998888899999999999999999999999754

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.92  E-value=8.5e-25  Score=190.02  Aligned_cols=130  Identities=26%  Similarity=0.344  Sum_probs=106.4

Q ss_pred             ceEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           14 GCEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ..+|..++.+...+..+. ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       117 V~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vkL~DFGls~~~  193 (496)
T PTZ00283        117 VLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVKLGDFGFSKMY  193 (496)
T ss_pred             EEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEEEEecccCeec
Confidence            345666666655554432 345688889999999999999999998   9999999999999999999999999999765


Q ss_pred             CCCCC-ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... .......||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       194 ~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~  248 (496)
T PTZ00283        194 AATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGE  248 (496)
T ss_pred             cccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            43221 1123345899999999999888999999999999999999999999744

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-25  Score=188.93  Aligned_cols=124  Identities=25%  Similarity=0.381  Sum_probs=99.5

Q ss_pred             eCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC
Q 042116           18 KGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      |.+..++.++...  ..+++..+...|+.|||+|+.|||.+   +|||||||..||++.+++.+||+|||++..-.....
T Consensus       469 CeGsSLY~hlHv~--etkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g  543 (678)
T KOG0193|consen  469 CEGSSLYTHLHVQ--ETKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSG  543 (678)
T ss_pred             ccCchhhhhccch--hhhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccceeeeeeecc
Confidence            3444444444433  37888999999999999999999999   999999999999999999999999999865332211


Q ss_pred             -ceeeeeecCCCcCchhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 -RTFTLIRGTRGYMAPEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 -~~~~~~~g~~~y~aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       .......|+..|+|||+++   ..+|+..+||||||+++|||+||.-||...
T Consensus       544 ~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~  596 (678)
T KOG0193|consen  544 EQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ  596 (678)
T ss_pred             ccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC
Confidence             1112234788999999986   457899999999999999999999999833

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.92  E-value=4.7e-25  Score=181.32  Aligned_cols=110  Identities=23%  Similarity=0.319  Sum_probs=95.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++....... ......|+..|+||
T Consensus        90 ~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aP  165 (316)
T cd05620          90 KGRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN-RASTFCGTPDYIAP  165 (316)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC-ceeccCCCcCccCH
Confidence            35678888899999999999999999   999999999999999999999999999875322211 22345589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+||+||++|+|++|+.||...
T Consensus       166 E~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~  199 (316)
T cd05620         166 EILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD  199 (316)
T ss_pred             HHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            9999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.5e-25  Score=184.07  Aligned_cols=116  Identities=23%  Similarity=0.350  Sum_probs=98.4

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..+..  ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++.....    ...
T Consensus        86 ~~L~~~l~--~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~----~~~  156 (333)
T cd05600          86 GDFRTLLN--NLGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT----YAN  156 (333)
T ss_pred             CCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCccccc----ccC
Confidence            34444443  234678888899999999999999999   999999999999999999999999999876533    122


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|++.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  201 (333)
T cd05600         157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS  201 (333)
T ss_pred             CcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC
Confidence            345899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.92  E-value=2e-25  Score=184.12  Aligned_cols=124  Identities=25%  Similarity=0.338  Sum_probs=100.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      ||+.++.+...+.   ....+++..+..++.|++.||+|||+ .   +|+||||||+||+++.++.+||+|||+++....
T Consensus        75 E~~~~~~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~  148 (325)
T cd05594          75 EYANGGELFFHLS---RERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  148 (325)
T ss_pred             eCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCC
Confidence            4444444433332   23468899999999999999999997 6   999999999999999999999999999875432


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......|++.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       149 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~  199 (325)
T cd05594         149 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  199 (325)
T ss_pred             CCc-ccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCC
Confidence            221 122345899999999999888999999999999999999999999644

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.92  E-value=3.8e-25  Score=182.39  Aligned_cols=110  Identities=26%  Similarity=0.374  Sum_probs=95.4

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+||
T Consensus        95 ~~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~-~~~~~~gt~~y~aP  170 (323)
T cd05615          95 VGKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV-TTRTFCGTPDYIAP  170 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCCCCc-cccCccCCccccCH
Confidence            35688999999999999999999998   999999999999999999999999999875432211 12234589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+||+||++|+|++|+.||...
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (323)
T cd05615         171 EIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE  204 (323)
T ss_pred             HHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence            9999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.92  E-value=3.1e-25  Score=186.29  Aligned_cols=110  Identities=22%  Similarity=0.286  Sum_probs=93.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||++...............||+.|+|||
T Consensus       137 ~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE  213 (370)
T cd05596         137 YDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPE  213 (370)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHH
Confidence            3577888889999999999999998   9999999999999999999999999999775433222223445899999999


Q ss_pred             hhhcC----CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNT----PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~----~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++...    .++.++|+|||||++|+|++|+.||...
T Consensus       214 ~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  250 (370)
T cd05596         214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (370)
T ss_pred             HhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC
Confidence            98653    3788999999999999999999999755

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.92  E-value=6.9e-25  Score=177.19  Aligned_cols=127  Identities=27%  Similarity=0.319  Sum_probs=102.9

Q ss_pred             EEeCCCCcchHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRR-RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      +|+.++.+...+... .....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++.....
T Consensus        73 e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  149 (280)
T cd05608          73 TIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKD  149 (280)
T ss_pred             eCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCC
Confidence            344444433333322 2345688999999999999999999998   999999999999999999999999999976543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... .....|++.|+|||++.+..++.++|+||||+++|+|++|+.||...
T Consensus       150 ~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~  200 (280)
T cd05608         150 GQSK-TKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRAR  200 (280)
T ss_pred             CCcc-ccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            3221 22345889999999999989999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.92  E-value=7.3e-25  Score=177.10  Aligned_cols=119  Identities=21%  Similarity=0.239  Sum_probs=99.8

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.......  ...
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~  166 (288)
T cd07863          92 DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMA--LTP  166 (288)
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCccccccCccc--CCC
Confidence            344444444455689999999999999999999999   999999999999999999999999999876533221  223


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||++.+..++.++|+||+||++|+|++|+.||...
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~  210 (288)
T cd07863         167 VVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  210 (288)
T ss_pred             ccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCC
Confidence            34788999999998888999999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=3.5e-25  Score=184.78  Aligned_cols=127  Identities=24%  Similarity=0.381  Sum_probs=110.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      ++|+. |+++..+..+.....++.+...+++.|++.|++|||+.   .|+|||||+.||++..+..+||.|||+++....
T Consensus        83 m~Y~e-Gg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   83 MEYCE-GGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             EeecC-CCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence            34444 45555555555678899999999999999999999988   999999999999999999999999999998865


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......||+.|++||.+.+.+|+.|+||||+||++|||.+-+.+|...
T Consensus       159 ~~~-~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~  209 (426)
T KOG0589|consen  159 EDS-LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS  209 (426)
T ss_pred             chh-hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCcc
Confidence            542 345567999999999999999999999999999999999999999865

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.92  E-value=4.1e-25  Score=182.82  Aligned_cols=126  Identities=18%  Similarity=0.259  Sum_probs=101.1

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+. . ....++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        81 Ey~~gg~L~~~l~-~-~~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  155 (331)
T cd05624          81 DYYVGGDLLTLLS-K-FEDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQD  155 (331)
T ss_pred             eCCCCCcHHHHHH-H-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccCC
Confidence            3444444444433 2 234678888899999999999999998   9999999999999999999999999999776443


Q ss_pred             CCceeeeeecCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .........|++.|+|||++..     ..++.++|+||||+++|+|++|+.||...
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         156 GTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             CceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence            3322233458999999999865     45788999999999999999999999754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.92  E-value=4.4e-25  Score=181.82  Aligned_cols=110  Identities=25%  Similarity=0.396  Sum_probs=95.4

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+||
T Consensus        90 ~~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~-~~~~~~gt~~y~aP  165 (320)
T cd05590          90 SRRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGK-TTSTFCGTPDYIAP  165 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCC-cccccccCccccCH
Confidence            35688899999999999999999998   999999999999999999999999999875422221 12234589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+|||||++|+|++|+.||...
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  199 (320)
T cd05590         166 EILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE  199 (320)
T ss_pred             HHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            9999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.92  E-value=3.5e-25  Score=182.63  Aligned_cols=109  Identities=28%  Similarity=0.377  Sum_probs=94.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++........ ......|++.|+|||
T Consensus        90 ~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE  165 (323)
T cd05595          90 RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKTFCGTPEYLAPE  165 (323)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC-ccccccCCcCcCCcc
Confidence            4678899999999999999999998   999999999999999999999999999875322211 122345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++|+|||||++|+|++|+.||...
T Consensus       166 ~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  198 (323)
T cd05595         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             cccCCCCCchhchhhhHHHHHHHHhCCCCCCCC
Confidence            998888999999999999999999999999644

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.92  E-value=4.8e-25  Score=181.84  Aligned_cols=125  Identities=25%  Similarity=0.288  Sum_probs=100.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+..   ...+.......++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        75 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~  148 (325)
T cd05602          75 LDYINGGELFYHLQR---ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  148 (325)
T ss_pred             EeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCccccc
Confidence            344555544443332   34567777888999999999999999   999999999999999999999999999875422


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       149 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         149 HNG-TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             CCC-CcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence            211 223345899999999999888999999999999999999999999744

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.92  E-value=3.9e-25  Score=182.03  Aligned_cols=124  Identities=25%  Similarity=0.289  Sum_probs=100.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.++..+.   ....+.......++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        76 e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  149 (321)
T cd05603          76 DYVNGGELFFHLQ---RERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEP  149 (321)
T ss_pred             cCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCC
Confidence            4445555444433   235677888889999999999999998   9999999999999999999999999998753222


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......|++.|+|||.+.+..++.++|+|||||++|+|++|+.||...
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (321)
T cd05603         150 EE-TTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (321)
T ss_pred             CC-ccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC
Confidence            11 123345899999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.92  E-value=7e-25  Score=178.97  Aligned_cols=110  Identities=22%  Similarity=0.271  Sum_probs=92.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ......+++.|+||
T Consensus        97 ~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~y~aP  172 (303)
T cd07869          97 PGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVPSH-TYSNEVVTLWYRPP  172 (303)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCCCc-cCCCCcccCCCCCh
Confidence            35678888899999999999999999   999999999999999999999999999875432211 12234478999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+||+||++|+|++|+.||...
T Consensus       173 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         173 DVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            98865 45788999999999999999999999754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=4.9e-25  Score=179.07  Aligned_cols=122  Identities=25%  Similarity=0.340  Sum_probs=101.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+...+..   ...++......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        80 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~  153 (291)
T cd05612          80 MEYVPGGELFSYLRN---SGRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD  153 (291)
T ss_pred             EeCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccC
Confidence            444555544444432   34678888899999999999999998   999999999999999999999999999876532


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..    ....|++.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       154 ~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~  201 (291)
T cd05612         154 RT----WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD  201 (291)
T ss_pred             Cc----ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            21    2235899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.9e-25  Score=179.98  Aligned_cols=114  Identities=29%  Similarity=0.309  Sum_probs=97.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      +..++.-.+.-+..|+.+||+|||+.   +|+||||||.|+|+|.+ |.+||||||.|+.+..+...  .....|..|+|
T Consensus       119 ~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn--iSYicSRyYRa  193 (364)
T KOG0658|consen  119 NQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN--ISYICSRYYRA  193 (364)
T ss_pred             CCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCc--eeEEEeccccC
Confidence            46677777778999999999999998   99999999999999976 88999999999998665543  34446889999


Q ss_pred             hhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCCCCCcc
Q 042116          112 PEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE  151 (208)
Q Consensus       112 PE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~  151 (208)
                      ||.+.+ ..|+.+.||||.||++.||+-|+.-|.++++.+.
T Consensus       194 PELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQ  234 (364)
T KOG0658|consen  194 PELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQ  234 (364)
T ss_pred             HHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHH
Confidence            998765 5689999999999999999999999988754443

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2e-25  Score=186.66  Aligned_cols=125  Identities=24%  Similarity=0.266  Sum_probs=100.1

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+..   ...++...+..++.|++.||+|||+.   +|+||||||+|||++.++.++|+|||++......
T Consensus        81 E~~~~g~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  154 (364)
T cd05599          81 EYLPGGDMMTLLMK---KDTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKS  154 (364)
T ss_pred             CCCCCcHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceecccc
Confidence            33444444443332   34688899999999999999999999   9999999999999999999999999998754321


Q ss_pred             CCc-------------------------------------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh
Q 042116           96 QTR-------------------------------------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC  138 (208)
Q Consensus        96 ~~~-------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t  138 (208)
                      ...                                     ......||+.|+|||++....++.++|+|||||++|+|++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  234 (364)
T cd05599         155 HRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLV  234 (364)
T ss_pred             ccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhc
Confidence            100                                     0012358999999999988889999999999999999999


Q ss_pred             cCcCCCCC
Q 042116          139 CRRNMEID  146 (208)
Q Consensus       139 g~~p~~~~  146 (208)
                      |+.||...
T Consensus       235 G~~Pf~~~  242 (364)
T cd05599         235 GYPPFCSD  242 (364)
T ss_pred             CCCCCCCC
Confidence            99999754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.92  E-value=3.9e-25  Score=179.33  Aligned_cols=109  Identities=24%  Similarity=0.298  Sum_probs=92.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ......++..|+|||
T Consensus        98 ~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~-~~~~~~~~~~y~aPE  173 (288)
T cd07871          98 NLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK-TYSNEVVTLWYRPPD  173 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc-cccCceecccccChH
Confidence            4568888899999999999999998   999999999999999999999999999876532221 122334788999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||+||++|+|++|+.||...
T Consensus       174 ~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~  207 (288)
T cd07871         174 VLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGS  207 (288)
T ss_pred             HhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            8865 55789999999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.92  E-value=5e-25  Score=182.16  Aligned_cols=120  Identities=24%  Similarity=0.313  Sum_probs=100.1

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~   96 (208)
                      |+.++.+...+..   ...++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus        99 ~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~  172 (329)
T PTZ00263         99 FVVGGELFTHLRK---AGRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT  172 (329)
T ss_pred             CCCCChHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc
Confidence            3444444444432   34678888889999999999999998   99999999999999999999999999998753322


Q ss_pred             CceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          ....|++.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       173 ----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  218 (329)
T PTZ00263        173 ----FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD  218 (329)
T ss_pred             ----ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence                2345899999999999888999999999999999999999999754

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.92  E-value=2.2e-24  Score=173.99  Aligned_cols=125  Identities=27%  Similarity=0.355  Sum_probs=102.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+...........+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus        73 e~~~g~-~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~  148 (277)
T cd05607          73 SLMNGG-DLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG  148 (277)
T ss_pred             ecCCCC-CHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCC
Confidence            344443 444444444455688898899999999999999998   9999999999999999999999999998765432


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .  ......|+..|+|||++.+..++.++|+||+||++|+|++|+.||...
T Consensus       149 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~  197 (277)
T cd05607         149 K--TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDH  197 (277)
T ss_pred             c--eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            2  122345889999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.1e-25  Score=185.28  Aligned_cols=110  Identities=28%  Similarity=0.360  Sum_probs=96.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC-----------------
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-----------------   96 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~-----------------   96 (208)
                      ..++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.......                 
T Consensus        96 ~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (350)
T cd05573          96 DVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDN  172 (350)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccccccccc
Confidence            6788999999999999999999998   99999999999999999999999999987654332                 


Q ss_pred             -----------CceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 -----------TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 -----------~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                                 ........||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~  233 (350)
T cd05573         173 VLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSD  233 (350)
T ss_pred             ccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCC
Confidence                       01122345899999999999888999999999999999999999999755

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.92  E-value=4.5e-25  Score=181.83  Aligned_cols=124  Identities=26%  Similarity=0.316  Sum_probs=100.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        76 e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~  149 (323)
T cd05575          76 DYVNGGELFFHLQR---ERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEH  149 (323)
T ss_pred             cCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccC
Confidence            44444444444332   34678888889999999999999998   9999999999999999999999999998753222


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......|++.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  199 (323)
T cd05575         150 SK-TTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (323)
T ss_pred             CC-ccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCC
Confidence            11 222345899999999999888999999999999999999999999744

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=3e-25  Score=181.51  Aligned_cols=126  Identities=23%  Similarity=0.327  Sum_probs=111.6

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ..-||.++|.+++++.++   ..++.+.+.++++||.+|+.|+|+.   +++|||||.+|||++.++++||+|||++-.+
T Consensus       130 ivMEYaS~GeLYDYiSer---~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly  203 (668)
T KOG0611|consen  130 IVMEYASGGELYDYISER---GSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLY  203 (668)
T ss_pred             EEEEecCCccHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhh
Confidence            356888899999988876   4677888889999999999999999   9999999999999999999999999999776


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  .....++|++-|.+||++.+.+| ++.+|.||+||++|.++.|..||++.
T Consensus       204 ~~~--kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~  256 (668)
T KOG0611|consen  204 ADK--KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR  256 (668)
T ss_pred             ccc--cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc
Confidence            433  23456779999999999999998 68899999999999999999999865

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.9e-25  Score=186.71  Aligned_cols=126  Identities=21%  Similarity=0.251  Sum_probs=99.6

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+.   ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        80 ~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~~  153 (377)
T cd05629          80 MEFLPGGDLMTMLI---KYDTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHK  153 (377)
T ss_pred             EeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeeccccccccc
Confidence            34454454444433   235678888889999999999999998   999999999999999999999999999863211


Q ss_pred             CCC-------------c---------------------------------eeeeeecCCCcCchhhhhcCCCCccccchh
Q 042116           95 DQT-------------R---------------------------------TFTLIRGTRGYMAPEWSKNTPISMKANVFN  128 (208)
Q Consensus        95 ~~~-------------~---------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s  128 (208)
                      ...             .                                 ......||+.|+|||++.+..++.++|+||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  233 (377)
T cd05629         154 QHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWS  233 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEe
Confidence            000             0                                 000135899999999998888999999999


Q ss_pred             HHHHHHHHHhcCcCCCCC
Q 042116          129 YGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       129 ~Gv~l~el~tg~~p~~~~  146 (208)
                      |||++|||++|+.||...
T Consensus       234 lGvil~elltG~~Pf~~~  251 (377)
T cd05629         234 LGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             cchhhhhhhcCCCCCCCC
Confidence            999999999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.92  E-value=9e-25  Score=180.48  Aligned_cols=111  Identities=24%  Similarity=0.389  Sum_probs=94.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--eeeeeecCCCcC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRGYM  110 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~g~~~y~  110 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........  ......|+..|+
T Consensus        97 ~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~  173 (338)
T cd07859          97 NDDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYR  173 (338)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcC
Confidence            34688999999999999999999999   9999999999999999999999999998764322211  112345899999


Q ss_pred             chhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||++.+  ..++.++|||||||++|+|++|+.||...
T Consensus       174 aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~  211 (338)
T cd07859         174 APELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK  211 (338)
T ss_pred             CHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            9999865  56889999999999999999999999654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.1e-24  Score=180.23  Aligned_cols=126  Identities=18%  Similarity=0.280  Sum_probs=100.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++ .+..+..+ ....++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        81 e~~~g~-~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  155 (331)
T cd05597          81 DYYVGG-DLLTLLSK-FEDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLAD  155 (331)
T ss_pred             ecCCCC-cHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCCC
Confidence            334444 44433332 244678888899999999999999999   9999999999999999999999999998765443


Q ss_pred             CCceeeeeecCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .........||+.|+|||++..     ..++.++|+||+||++|+|++|+.||...
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         156 GTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             CCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence            3322233458999999999863     45688999999999999999999999754

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.92  E-value=1.4e-24  Score=186.26  Aligned_cols=110  Identities=27%  Similarity=0.320  Sum_probs=93.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ....++...+..++.|++.||+|||+.   +|+||||||+||+++.++ .+||+|||+++.......  .....||+.|+
T Consensus       163 ~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~--~~~~~~t~~y~  237 (440)
T PTZ00036        163 NNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQR--SVSYICSRFYR  237 (440)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccchhccCCCC--cccCCCCcCcc
Confidence            456788999999999999999999999   999999999999998664 699999999986543222  22345789999


Q ss_pred             chhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||++.+ ..++.++|||||||++|+|++|..||...
T Consensus       238 aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  274 (440)
T PTZ00036        238 APELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQ  274 (440)
T ss_pred             CHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9998865 46899999999999999999999999755

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.92  E-value=1.2e-24  Score=178.93  Aligned_cols=124  Identities=22%  Similarity=0.261  Sum_probs=100.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++.+... ..  ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        76 ey~~~g~L~~~-l~--~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~  149 (316)
T cd05619          76 EYLNGGDLMFH-IQ--SCHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLG  149 (316)
T ss_pred             eCCCCCcHHHH-HH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCC
Confidence            44444444333 32  234678888899999999999999998   9999999999999999999999999998754222


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......||..|+|||++.+..++.++|+||+||++|+|++|+.||...
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (316)
T cd05619         150 DA-KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH  199 (316)
T ss_pred             CC-ceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC
Confidence            21 223345899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.92  E-value=3.7e-25  Score=182.49  Aligned_cols=124  Identities=25%  Similarity=0.312  Sum_probs=101.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.++..+.   ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        76 e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~  149 (325)
T cd05604          76 DFVNGGELFFHLQ---RERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQ  149 (325)
T ss_pred             cCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCC
Confidence            3444444444332   345688899999999999999999998   9999999999999999999999999998753222


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......|+..|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (325)
T cd05604         150 SD-TTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR  199 (325)
T ss_pred             CC-CcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCC
Confidence            11 223345899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=7.8e-25  Score=179.43  Aligned_cols=126  Identities=22%  Similarity=0.297  Sum_probs=109.2

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .-||+.+|.+..++...+.   ..+..++.+|.+||.||-|||++   +||+||||..||+++.+|++||+|||+++.-.
T Consensus       428 VMEyvnGGDLMyhiQQ~Gk---FKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni  501 (683)
T KOG0696|consen  428 VMEYVNGGDLMYHIQQVGK---FKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  501 (683)
T ss_pred             EEEEecCchhhhHHHHhcc---cCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecccccccc
Confidence            4588888888887776554   44556678999999999999999   99999999999999999999999999997643


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      -+. ......+||+.|+|||++...+|+.++|+|||||+||||+.|+.||+++
T Consensus       502 ~~~-~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe  553 (683)
T KOG0696|consen  502 FDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  553 (683)
T ss_pred             cCC-cceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence            222 2345677999999999999999999999999999999999999999876

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.92  E-value=2.5e-25  Score=186.93  Aligned_cols=125  Identities=26%  Similarity=0.302  Sum_probs=98.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+..   ...++......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..+...
T Consensus        81 E~~~~g~L~~~i~~---~~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~  154 (376)
T cd05598          81 DYIPGGDMMSLLIR---LGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (376)
T ss_pred             eCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCcccccc
Confidence            33444444443332   34578888888999999999999998   9999999999999999999999999997532100


Q ss_pred             C------------------------------------------CceeeeeecCCCcCchhhhhcCCCCccccchhHHHHH
Q 042116           96 Q------------------------------------------TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVL  133 (208)
Q Consensus        96 ~------------------------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l  133 (208)
                      .                                          ........||+.|+|||++.+..++.++|||||||++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  234 (376)
T cd05598         155 HDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL  234 (376)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeecccee
Confidence            0                                          0001123589999999999988899999999999999


Q ss_pred             HHHHhcCcCCCCC
Q 042116          134 LEIVCCRRNMEID  146 (208)
Q Consensus       134 ~el~tg~~p~~~~  146 (208)
                      |+|++|+.||...
T Consensus       235 yell~G~~Pf~~~  247 (376)
T cd05598         235 YEMLVGQPPFLAD  247 (376)
T ss_pred             eehhhCCCCCCCC
Confidence            9999999999755

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.92  E-value=1.7e-24  Score=182.01  Aligned_cols=109  Identities=26%  Similarity=0.315  Sum_probs=92.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-eeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~g~~~y~aPE  113 (208)
                      .+++...++++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.......... ....++..|+|||
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE  284 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPE  284 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHH
Confidence            577888899999999999999998   999999999999999999999999999876543322111 1122456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ++....++.++|+|||||++|+|++ |+.||...
T Consensus       285 ~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~  318 (374)
T cd05106         285 SIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGI  318 (374)
T ss_pred             HhcCCCCCccccHHHHHHHHHHHHhCCCCCCccc
Confidence            9988889999999999999999997 99998754

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.92  E-value=1.4e-24  Score=171.35  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=104.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~   92 (208)
                      |...+|.+|..+.. +....++++.+-.|+.||+.|++|||+.   +|.||||||+|+|...   |..+||+|||+++..
T Consensus       139 E~meGGeLfsriq~-~g~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t  214 (400)
T KOG0604|consen  139 ECMEGGELFSRIQD-RGDQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKET  214 (400)
T ss_pred             ecccchHHHHHHHH-cccccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEeccccccccc
Confidence            44556667766654 4667789999999999999999999999   9999999999999954   456899999999875


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  .....+-|+.|.|||++....|+...|+||+||++|-|++|.+||+..
T Consensus       215 ~~~~--~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~  266 (400)
T KOG0604|consen  215 QEPG--DLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  266 (400)
T ss_pred             CCCc--cccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCccccc
Confidence            4322  233344699999999999889999999999999999999999999865

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.92  E-value=2.2e-25  Score=186.31  Aligned_cols=125  Identities=23%  Similarity=0.274  Sum_probs=100.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++......
T Consensus        81 E~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~  154 (360)
T cd05627          81 EFLPGGDMMTLLMK---KDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKA  154 (360)
T ss_pred             eCCCCccHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCcccccc
Confidence            34444444433332   34678888999999999999999998   9999999999999999999999999998654221


Q ss_pred             CC----------------------------------ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCc
Q 042116           96 QT----------------------------------RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRR  141 (208)
Q Consensus        96 ~~----------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~  141 (208)
                      ..                                  .......||+.|+|||++.+..++.++|+|||||++|+|++|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~  234 (360)
T cd05627         155 HRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP  234 (360)
T ss_pred             cccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCC
Confidence            10                                  00112358999999999998889999999999999999999999


Q ss_pred             CCCCC
Q 042116          142 NMEID  146 (208)
Q Consensus       142 p~~~~  146 (208)
                      ||...
T Consensus       235 Pf~~~  239 (360)
T cd05627         235 PFCSE  239 (360)
T ss_pred             CCCCC
Confidence            99754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.92  E-value=1.1e-24  Score=179.61  Aligned_cols=124  Identities=23%  Similarity=0.281  Sum_probs=99.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++.++..+.   ....+....+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        80 e~~~~~~L~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (323)
T cd05584          80 EYLSGGELFMHLE---REGIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHE  153 (323)
T ss_pred             eCCCCchHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccC
Confidence            3444444443332   234567788888999999999999998   9999999999999999999999999998754322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......|++.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       154 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~  203 (323)
T cd05584         154 GT-VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE  203 (323)
T ss_pred             CC-cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC
Confidence            22 122345899999999998888899999999999999999999999754

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.92  E-value=9.9e-25  Score=169.53  Aligned_cols=113  Identities=24%  Similarity=0.245  Sum_probs=96.9

Q ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCc
Q 042116           30 RRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY  109 (208)
Q Consensus        30 ~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y  109 (208)
                      +....-+.......++.++++||+|||++   .|+||||||.|+|++.+|.+||+|||+++.+.+...... ..+-|.+|
T Consensus        92 kd~~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~-~~V~TRWY  167 (318)
T KOG0659|consen   92 KDKNIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQT-HQVVTRWY  167 (318)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCCCcccc-cceeeeec
Confidence            34566778888999999999999999999   999999999999999999999999999998865544322 22568999


Q ss_pred             Cchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .|||.+.+ ..|+...|+||.||++.||+.|.+-|.++
T Consensus       168 RAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~  205 (318)
T KOG0659|consen  168 RAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGD  205 (318)
T ss_pred             cChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCC
Confidence            99998765 56899999999999999999988777655

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.92  E-value=3.6e-24  Score=175.60  Aligned_cols=109  Identities=23%  Similarity=0.301  Sum_probs=91.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE----cCCCcEEEEecCCceecCCCCCc--eeeeeecCCC
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRG  108 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~g~~~  108 (208)
                      .++...+..++.|++.||+|||+.   +|+||||||+|||+    +.++.+||+|||+++........  ......+|+.
T Consensus       104 ~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~  180 (317)
T cd07868         104 QLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFW  180 (317)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCcccccc
Confidence            578888999999999999999998   99999999999999    45678999999999875432221  1223457999


Q ss_pred             cCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.+ ..++.++|+||+||++|+|++|+.||...
T Consensus       181 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             ccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            999999876 45789999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=3.8e-25  Score=176.53  Aligned_cols=125  Identities=27%  Similarity=0.314  Sum_probs=106.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      -+|..+|.+|.+|.+.+   .++......+-.+|..||.|||+.   +|++||||.+|.+++.+|++||+|||+++.-..
T Consensus       247 MeyanGGeLf~HLsrer---~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~  320 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER---VFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEEIK  320 (516)
T ss_pred             EEEccCceEeeehhhhh---cccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhccc
Confidence            46778888998887643   345555567888999999999998   999999999999999999999999999986432


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......+||+.|.|||++....|+.++|.|.+||++|||++|+.||...
T Consensus       321 ~g-~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~  371 (516)
T KOG0690|consen  321 YG-DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK  371 (516)
T ss_pred             cc-ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc
Confidence            22 2345677999999999999999999999999999999999999999854

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.91  E-value=4.5e-25  Score=182.21  Aligned_cols=121  Identities=22%  Similarity=0.348  Sum_probs=99.3

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..+..+ ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++............
T Consensus        86 ~~L~~~l~~-~~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~  161 (330)
T cd05601          86 GDLLSLLNR-YEDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSK  161 (330)
T ss_pred             CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeee
Confidence            344444432 234688899999999999999999999   9999999999999999999999999999876543333233


Q ss_pred             eeecCCCcCchhhhh------cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSK------NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~------~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...||+.|+|||++.      ...++.++|||||||++|+|++|+.||...
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  212 (330)
T cd05601         162 LPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEG  212 (330)
T ss_pred             cccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCC
Confidence            345899999999986      455788999999999999999999999754

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.91  E-value=2.4e-24  Score=177.58  Aligned_cols=111  Identities=24%  Similarity=0.277  Sum_probs=96.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++....... ......|++.|+|
T Consensus        94 ~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~g~~~y~a  169 (324)
T cd05589          94 HTDVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGD-RTSTFCGTPEFLA  169 (324)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCC-cccccccCccccC
Confidence            345789999999999999999999998   999999999999999999999999999865322211 1233458999999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+..++.++|+|||||++|+|++|+.||...
T Consensus       170 PE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~  204 (324)
T cd05589         170 PEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD  204 (324)
T ss_pred             HhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC
Confidence            99999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.91  E-value=3.2e-24  Score=173.10  Aligned_cols=127  Identities=20%  Similarity=0.277  Sum_probs=101.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+...+..  ....+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||.++....
T Consensus        87 ~e~~~~gsL~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~  161 (279)
T cd05111          87 TQLSPLGSLLDHVRQ--HRDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLLYP  161 (279)
T ss_pred             EEeCCCCcHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceeccC
Confidence            344455555444432  234688999999999999999999998   999999999999999999999999999986543


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .... ......++..|++||.+.+..++.++|+||||+++||+++ |+.||...
T Consensus       162 ~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~  215 (279)
T cd05111         162 DDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGM  215 (279)
T ss_pred             CCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            3221 1222346678999999988889999999999999999998 99998654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.91  E-value=2.1e-24  Score=177.56  Aligned_cols=109  Identities=27%  Similarity=0.323  Sum_probs=95.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......|+..|+|||
T Consensus        91 ~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~g~~~y~aPE  166 (318)
T cd05570          91 GRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV-TTSTFCGTPDYIAPE  166 (318)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC-cccceecCccccCHH
Confidence            4689999999999999999999998   999999999999999999999999999875322222 122345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++|+|||||++|+|++|+.||...
T Consensus       167 ~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~  199 (318)
T cd05570         167 ILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD  199 (318)
T ss_pred             HhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCC
Confidence            999889999999999999999999999999744

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=4.1e-25  Score=182.51  Aligned_cols=124  Identities=23%  Similarity=0.336  Sum_probs=99.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.++..+.   ....++...+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++.....
T Consensus        76 e~~~~g~L~~~l~---~~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~  149 (330)
T cd05586          76 DYMSGGELFWHLQ---KEGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTD  149 (330)
T ss_pred             cCCCCChHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCC
Confidence            3444444444433   345688899999999999999999998   9999999999999999999999999998754222


Q ss_pred             CCceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......||..|+|||.+.+. .++.++|+||+||++|+|++|+.||...
T Consensus       150 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~  200 (330)
T cd05586         150 NK-TTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAE  200 (330)
T ss_pred             CC-CccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCC
Confidence            21 12234589999999998654 4789999999999999999999999754

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.91  E-value=3.4e-24  Score=185.63  Aligned_cols=128  Identities=23%  Similarity=0.258  Sum_probs=103.6

Q ss_pred             EEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      ||+.++.+...+.... ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       145 E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~  221 (478)
T PTZ00267        145 EYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSD  221 (478)
T ss_pred             ECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCC
Confidence            3444454444443332 344678888899999999999999998   999999999999999999999999999987643


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       222 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~  274 (478)
T PTZ00267        222 SVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGP  274 (478)
T ss_pred             ccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            3221 223345899999999999888999999999999999999999999644

>PHA02988 hypothetical protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=175.25  Aligned_cols=124  Identities=17%  Similarity=0.096  Sum_probs=99.7

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.++.+...+..   ...+++....+++.+++.||.|||+..  +++||||||+||+++.++.+||+|||+++...
T Consensus       100 v~Ey~~~g~L~~~l~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~  174 (283)
T PHA02988        100 ILEYCTRGYLREVLDK---EKDLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLKIICHGLEKILS  174 (283)
T ss_pred             EEEeCCCCcHHHHHhh---CCCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEEEcccchHhhhc
Confidence            4455555544444332   346888899999999999999999732  77899999999999999999999999987653


Q ss_pred             CCCCceeeeeecCCCcCchhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...    ....++..|+|||.+.+  ..++.++|||||||++|||++|+.||...
T Consensus       175 ~~~----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~  225 (283)
T PHA02988        175 SPP----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENL  225 (283)
T ss_pred             ccc----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCC
Confidence            221    12347889999999975  67899999999999999999999999754

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.91  E-value=5.4e-24  Score=176.63  Aligned_cols=107  Identities=26%  Similarity=0.338  Sum_probs=93.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......    ....|+..|+||
T Consensus       112 ~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~t~~y~aP  184 (343)
T cd07878         112 CQKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFGLARQADDEM----TGYVATRWYRAP  184 (343)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCccceecCCCc----CCccccccccCc
Confidence            45688999999999999999999999   99999999999999999999999999998653321    233588999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+ ..++.++|||||||++|+|++|+.||...
T Consensus       185 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  219 (343)
T cd07878         185 EIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGN  219 (343)
T ss_pred             hHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            99876 46789999999999999999999999654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=8.3e-24  Score=178.90  Aligned_cols=113  Identities=25%  Similarity=0.272  Sum_probs=98.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~  110 (208)
                      ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||+++........ ......||..|+
T Consensus       178 ~~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~  254 (392)
T PHA03207        178 RSGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETN  254 (392)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCcc
Confidence            346789999999999999999999998   9999999999999999999999999998765433221 122345899999


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      |||++....++.++|+|||||++|+|++|+.||....
T Consensus       255 aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  291 (392)
T PHA03207        255 SPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQ  291 (392)
T ss_pred             CHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999998889999999999999999999999997653

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=1.9e-23  Score=179.76  Aligned_cols=109  Identities=24%  Similarity=0.244  Sum_probs=94.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++........ ......||..|+||
T Consensus       255 ~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~AP  331 (461)
T PHA03211        255 RPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAP  331 (461)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCH
Confidence            4689999999999999999999998   9999999999999999999999999999765432221 11234589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      |++.+..++.++|||||||++|||++|..++..
T Consensus       332 E~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~  364 (461)
T PHA03211        332 EVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFS  364 (461)
T ss_pred             HHHcCCCCCchHHHHHHHHHHHHHHHcCCCccc
Confidence            999988899999999999999999999876643

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.91  E-value=2e-24  Score=180.78  Aligned_cols=107  Identities=27%  Similarity=0.260  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ......++..|+|||+
T Consensus       122 ~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~--~~~~~~~t~~y~aPE~  196 (364)
T cd07875         122 ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEV  196 (364)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCCccccCCCC--cccCCcccCCcCCHHH
Confidence            477888889999999999999998   99999999999999999999999999997653221  1223458899999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.+..++.++|+|||||++|+|++|+.||...
T Consensus       197 ~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         197 ILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             HhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence            99988999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.91  E-value=4.6e-24  Score=174.81  Aligned_cols=109  Identities=23%  Similarity=0.303  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE----cCCCcEEEEecCCceecCCCCCc--eeeeeecCCC
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRG  108 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~g~~~  108 (208)
                      .+++..+..++.|++.||.|||+.   +|+||||||+||++    +.++.+||+|||+++........  ......+|..
T Consensus       104 ~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~  180 (317)
T cd07867         104 QLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFW  180 (317)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceeccc
Confidence            578888899999999999999998   99999999999999    55678999999999865433221  1223457899


Q ss_pred             cCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||.+.+ ..++.++|||||||++|+|+||+.||...
T Consensus       181 y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             ccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            999999876 45789999999999999999999999744

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.91  E-value=5.4e-24  Score=176.64  Aligned_cols=110  Identities=25%  Similarity=0.257  Sum_probs=93.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..+.+++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++........ ......++..|+||
T Consensus       168 ~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aP  244 (337)
T cd05054         168 EPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  244 (337)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCc
Confidence            3678999999999999999999998   9999999999999999999999999999765332221 11223356789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|||||||++|+|++ |..||...
T Consensus       245 E~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~  279 (337)
T cd05054         245 ESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  279 (337)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999998 99998653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.2e-24  Score=181.92  Aligned_cols=110  Identities=24%  Similarity=0.285  Sum_probs=93.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE-cCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM-DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ........+..|+.+++.|+.|||.+   +++||||||+|||+ +..++++|+|||.++.....    ....+-|..|.|
T Consensus       409 ~~~~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~----~~tp~~t~~y~A  481 (612)
T KOG0603|consen  409 SKPEFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS----CDTPALTLQYVA  481 (612)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchh----hcccchhhcccC
Confidence            33344467778999999999999998   99999999999999 68999999999999876544    222235778999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSK  149 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~  149 (208)
                      ||++....|+.++|+||||++||+|++|+.||...+..
T Consensus       482 PEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~  519 (612)
T KOG0603|consen  482 PEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG  519 (612)
T ss_pred             hhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence            99999999999999999999999999999999866433

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.91  E-value=5.2e-24  Score=174.90  Aligned_cols=128  Identities=22%  Similarity=0.223  Sum_probs=101.3

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|..++.+++.+..  ....+++...++++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        86 v~e~~~~g~l~~~l~~--~~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~  160 (316)
T cd05108          86 ITQLMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  160 (316)
T ss_pred             eeecCCCCCHHHHHHh--ccccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEcccccccccc
Confidence            3445555555554433  234578888999999999999999998   99999999999999999999999999998764


Q ss_pred             CCCCcee-eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           94 PDQTRTF-TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~-~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....... ....++..|+|||++.+..++.++|+||||+++||+++ |+.||...
T Consensus       161 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~  215 (316)
T cd05108         161 ADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  215 (316)
T ss_pred             CCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            3322111 11223567999999998889999999999999999998 99998644

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PTZ00284 protein kinase; Provisional

Probab=99.91  E-value=3.7e-24  Score=184.87  Aligned_cols=106  Identities=22%  Similarity=0.259  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCC----------------cEEEEecCCceecCCCC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFW----------------TAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~----------------~~kl~dfg~~~~~~~~~   96 (208)
                      ..+++..+..++.|++.||.|||+ .   +|+||||||+|||++.++                .+||+|||.+.....  
T Consensus       226 ~~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~--  300 (467)
T PTZ00284        226 GPFSHRHLAQIIFQTGVALDYFHTEL---HLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERH--  300 (467)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCcc--
Confidence            468889999999999999999997 5   899999999999998665                489999998754321  


Q ss_pred             CceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       301 --~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  348 (467)
T PTZ00284        301 --SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH  348 (467)
T ss_pred             --ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence              122345899999999999989999999999999999999999999754

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2e-24  Score=193.76  Aligned_cols=125  Identities=20%  Similarity=0.261  Sum_probs=108.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..||.++.-+.+..   .++...+..++.+|..||.-||+.   |.|||||||+|||++..|++||+|||.|-.+..+
T Consensus       155 dY~pGGDlltLlSk~~---~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLADFGsClkm~~d  228 (1317)
T KOG0612|consen  155 DYMPGGDLLTLLSKFD---RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDAD  228 (1317)
T ss_pred             ecccCchHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeeccchhHHhcCCC
Confidence            4556666555444332   789999999999999999999999   9999999999999999999999999999887766


Q ss_pred             CCceeeeeecCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ........+|||-|.+||++..     +.|+..+|+||+||++|||+.|..||+.+
T Consensus       229 G~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad  284 (1317)
T KOG0612|consen  229 GTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD  284 (1317)
T ss_pred             CcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH
Confidence            6666777789999999999852     56889999999999999999999999865

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.91  E-value=4.5e-24  Score=179.17  Aligned_cols=111  Identities=27%  Similarity=0.392  Sum_probs=95.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..............++..|+||
T Consensus        97 ~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aP  173 (372)
T cd07853          97 PQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAP  173 (372)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCH
Confidence            45688999999999999999999998   999999999999999999999999999986543332222334578899999


Q ss_pred             hhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+. .++.++|+||+||++|+|++|+.||...
T Consensus       174 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  208 (372)
T cd07853         174 EILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQ  208 (372)
T ss_pred             HHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCC
Confidence            998764 4789999999999999999999999754

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.91  E-value=5.9e-24  Score=178.13  Aligned_cols=126  Identities=26%  Similarity=0.370  Sum_probs=111.6

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC----CcEEEEecCC
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF----WTAKISDFGL   88 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~----~~~kl~dfg~   88 (208)
                      ..-|++.+|.+|+.+...    ..+...+..++.|++.|+.|||+.   +|+|||+||+|+|+...    +.+|++|||+
T Consensus       113 lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGl  185 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGL  185 (382)
T ss_pred             EEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCC
Confidence            355778888899988887    399999999999999999999998   99999999999999643    4799999999


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      +.....  .......+||+.|+|||.+...+|+..+|+||+||++|.|++|.+||....
T Consensus       186 a~~~~~--~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~  242 (382)
T KOG0032|consen  186 AKFIKP--GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGET  242 (382)
T ss_pred             ceEccC--CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCC
Confidence            988755  334566779999999999999999999999999999999999999998774

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.91  E-value=7.9e-24  Score=178.09  Aligned_cols=109  Identities=26%  Similarity=0.302  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-eeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~g~~~y~aPE  113 (208)
                      .+++..+.+++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......... ....++..|+|||
T Consensus       210 ~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE  286 (375)
T cd05104         210 ALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPE  286 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChh
Confidence            578888999999999999999998   999999999999999999999999999976543322111 1122456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|+|++ |..||...
T Consensus       287 ~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~  320 (375)
T cd05104         287 SIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGM  320 (375)
T ss_pred             HhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence            9998889999999999999999998 88888644

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.91  E-value=7.7e-24  Score=169.67  Aligned_cols=129  Identities=17%  Similarity=0.206  Sum_probs=100.8

Q ss_pred             ceEEeCCCCcchHHHHhh---hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRR---ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ..+|..++.+...+...+   ....+++.....++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++
T Consensus        84 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  160 (272)
T cd05075          84 ILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGLSK  160 (272)
T ss_pred             EEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCCccc
Confidence            445555555444443322   234578999999999999999999998   99999999999999999999999999988


Q ss_pred             ecCCCCCce-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116           91 LLMPDQTRT-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus        91 ~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      ......... .....+++.|++||+.....++.++|+||||+++|++++ |+.||..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~  217 (272)
T cd05075         161 KIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPG  217 (272)
T ss_pred             ccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            654322211 112235668999999988889999999999999999999 7888864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.91  E-value=8.9e-24  Score=170.36  Aligned_cols=110  Identities=23%  Similarity=0.255  Sum_probs=93.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..++....+.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||+++........ ......++..|+||
T Consensus       119 ~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05048         119 SSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPP  195 (283)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCH
Confidence            4578888999999999999999998   9999999999999999999999999998765332211 11222357789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++|+|||||++|||++ |..||...
T Consensus       196 E~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~  230 (283)
T cd05048         196 EAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF  230 (283)
T ss_pred             HHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            99988889999999999999999998 99998754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.91  E-value=6.6e-24  Score=170.10  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=97.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||..++ ++...... ....+++..++.++.|++.||+|||+.   +++||||||+||+++.++.++++|||.+.....
T Consensus        85 ~e~~~~~-~L~~~l~~-~~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~  159 (266)
T cd05064          85 TEYMSNG-ALDSFLRK-HEGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKS  159 (266)
T ss_pred             EEeCCCC-cHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCcccccccc
Confidence            3444444 44433332 234688999999999999999999998   999999999999999999999999998755322


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..........++..|+|||.+.+..++.++|+|||||++|++++ |+.||...
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~  212 (266)
T cd05064         160 EAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDM  212 (266)
T ss_pred             cchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence            11111111224568999999988889999999999999999775 99998644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.91  E-value=9.2e-24  Score=170.16  Aligned_cols=128  Identities=22%  Similarity=0.216  Sum_probs=100.8

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..++..++.++..+..  ....+++...+.++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++...
T Consensus        86 ~~~~~~~g~l~~~l~~--~~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~  160 (279)
T cd05109          86 VTQLMPYGCLLDYVRE--NKDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARLLD  160 (279)
T ss_pred             EEEcCCCCCHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceeecc
Confidence            3444555555444332  235688999999999999999999998   99999999999999999999999999998764


Q ss_pred             CCCCce-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           94 PDQTRT-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        94 ~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...... .....++..|++||...+..++.++|+||||+++||+++ |..||...
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  215 (279)
T cd05109         161 IDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGI  215 (279)
T ss_pred             cccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            322211 111124567999999988889999999999999999998 88888643

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.90  E-value=1.5e-23  Score=171.02  Aligned_cols=108  Identities=24%  Similarity=0.238  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      .+++....+++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......... .....++..|+|||
T Consensus       134 ~~~~~~~~~i~~~i~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE  210 (304)
T cd05096         134 AISYSSLLHVALQIASGMKYLSSL---NFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWE  210 (304)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHC---CccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHH
Confidence            467788899999999999999998   99999999999999999999999999997653332211 11223577899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhc--CcCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCC--RRNMEI  145 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg--~~p~~~  145 (208)
                      ++....++.++|+||||+++|+|+++  ..||..
T Consensus       211 ~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~  244 (304)
T cd05096         211 CILMGKFTTASDVWAFGVTLWEILMLCKEQPYGE  244 (304)
T ss_pred             HHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCc
Confidence            99888899999999999999999874  456653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.90  E-value=1e-23  Score=168.50  Aligned_cols=127  Identities=24%  Similarity=0.298  Sum_probs=99.9

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+...........+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++......
T Consensus        82 e~~~~~-~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~  157 (263)
T cd05052          82 EFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  157 (263)
T ss_pred             EeCCCC-cHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccc
Confidence            333433 444444444455689999999999999999999998   9999999999999999999999999998765432


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..........+..|+|||.+.+..++.++|+||||+++|+|++ |..||...
T Consensus       158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~  209 (263)
T cd05052         158 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI  209 (263)
T ss_pred             eeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            2211111123557999999988889999999999999999998 88888643

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.90  E-value=7.4e-24  Score=182.73  Aligned_cols=136  Identities=22%  Similarity=0.195  Sum_probs=117.6

Q ss_pred             cccccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc--CCC--cEEEE
Q 042116            9 IEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD--EFW--TAKIS   84 (208)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~--~~kl~   84 (208)
                      .+.....|||.+|.+...+-.-.+...++..+.+.++.+++.||.|||+.   +|+||||||.||++.  .+|  ..||+
T Consensus        90 ~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLt  166 (732)
T KOG4250|consen   90 RLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLT  166 (732)
T ss_pred             ccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeee
Confidence            34556788999999888888778889999999999999999999999998   999999999999883  223  36999


Q ss_pred             ecCCceecCCCCCceeeeeecCCCcCchhhhh-cCCCCccccchhHHHHHHHHHhcCcCCCCCCCC
Q 042116           85 DFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIVCCRRNMEIDPSK  149 (208)
Q Consensus        85 dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~  149 (208)
                      |||.|+.+..+.  ......||..|.+||... ...|+..+|.|||||++|++.||..||-.....
T Consensus       167 DfG~Arel~d~s--~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~p  230 (732)
T KOG4250|consen  167 DFGAARELDDNS--LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGP  230 (732)
T ss_pred             cccccccCCCCC--eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCc
Confidence            999999885544  466677999999999998 478899999999999999999999999866443

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=4.2e-24  Score=182.11  Aligned_cols=123  Identities=26%  Similarity=0.328  Sum_probs=103.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~   94 (208)
                      |..-.|.+..+..   ..+.+..+..+.|++||+.||.|||++ .|+|||||||..||+++. -|.+||+|+|+|.....
T Consensus       123 EL~TSGtLr~Y~k---k~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~  198 (632)
T KOG0584|consen  123 ELFTSGTLREYRK---KHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRK  198 (632)
T ss_pred             ecccCCcHHHHHH---HhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhc
Confidence            4445555555543   446778889999999999999999998 789999999999999975 47899999999988644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..   ...++|||.|||||+.. ..|+..+||||||++++||+|+..||+..
T Consensus       199 s~---aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC  246 (632)
T KOG0584|consen  199 SH---AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSEC  246 (632)
T ss_pred             cc---cceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhh
Confidence            33   33467999999999987 56999999999999999999999999755

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.90  E-value=1.2e-23  Score=173.96  Aligned_cols=123  Identities=25%  Similarity=0.385  Sum_probs=99.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.+ +++..+...  ...++...+..++.|++.||.|||+..  +|+||||||+||+++.++.++|+|||++......
T Consensus        83 e~~~~-~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  157 (331)
T cd06649          83 EHMDG-GSLDQVLKE--AKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (331)
T ss_pred             ecCCC-CcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCccccccccc
Confidence            34443 344444432  345788889999999999999999852  6999999999999999999999999998765322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .   .....|+..|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       158 ~---~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  205 (331)
T cd06649         158 M---ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPP  205 (331)
T ss_pred             c---cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            1   12335899999999999888999999999999999999999999643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.90  E-value=1.3e-23  Score=170.42  Aligned_cols=110  Identities=22%  Similarity=0.246  Sum_probs=93.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++......... ......++..|+||
T Consensus       118 ~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  194 (291)
T cd05094         118 GELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  194 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecCh
Confidence            4578999999999999999999999   9999999999999999999999999998765332211 11223357789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|+||||+++|+|++ |+.||...
T Consensus       195 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  229 (291)
T cd05094         195 ESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQL  229 (291)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99988889999999999999999999 99998644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=7.8e-25  Score=179.91  Aligned_cols=107  Identities=29%  Similarity=0.337  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhh
Q 042116           37 ESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSK  116 (208)
Q Consensus        37 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  116 (208)
                      ......-+++++..||.|||++   +.+|||||+.||++..+|.+|++|||++.......... ...+||+.|||||++.
T Consensus       109 ~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr-~tfvGTPfwMAPEVI~  184 (467)
T KOG0201|consen  109 DEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR-KTFVGTPFWMAPEVIK  184 (467)
T ss_pred             ccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechhhcc-ccccccccccchhhhc
Confidence            5555567899999999999999   99999999999999999999999999998775554444 5567999999999999


Q ss_pred             cCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          117 NTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       117 ~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ...|+.++||||||++.+||.+|.+|+....
T Consensus       185 ~~~Y~~KADIWSLGITaiEla~GePP~s~~h  215 (467)
T KOG0201|consen  185 QSGYDTKADIWSLGITAIELAKGEPPHSKLH  215 (467)
T ss_pred             cccccchhhhhhhhHHHHHHhcCCCCCcccC
Confidence            8899999999999999999999999997653

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=2.2e-24  Score=177.34  Aligned_cols=124  Identities=24%  Similarity=0.285  Sum_probs=101.2

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+.   ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        78 e~~~~~~L~~~l~---~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~  151 (318)
T cd05582          78 DFLRGGDLFTRLS---KEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  151 (318)
T ss_pred             cCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCC
Confidence            3444444444332   234688999999999999999999998   9999999999999999999999999998765332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......|+..|+|||.+....++.++|+|||||++|+|++|+.||...
T Consensus       152 ~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  201 (318)
T cd05582         152 EK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK  201 (318)
T ss_pred             CC-ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC
Confidence            21 223345899999999998888899999999999999999999999754

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=171.92  Aligned_cols=131  Identities=21%  Similarity=0.235  Sum_probs=108.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC-
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~-   94 (208)
                      |||. |+.+.-+.++...+.++...+..++.+++.||.|||-.   |||+|||||+|||+.++|++.|+||.++..... 
T Consensus       157 eyCp-GGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~~~~  232 (459)
T KOG0610|consen  157 EYCP-GGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRCPVS  232 (459)
T ss_pred             ecCC-CccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccCCCC
Confidence            4444 55566677788889999999999999999999999999   999999999999999999999999988743210 


Q ss_pred             --------------------------------CCC----------------------ceeeeeecCCCcCchhhhhcCCC
Q 042116           95 --------------------------------DQT----------------------RTFTLIRGTRGYMAPEWSKNTPI  120 (208)
Q Consensus        95 --------------------------------~~~----------------------~~~~~~~g~~~y~aPE~~~~~~~  120 (208)
                                                      ...                      .....++||-.|.|||++.+...
T Consensus       233 Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GH  312 (459)
T KOG0610|consen  233 PTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGH  312 (459)
T ss_pred             CeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCC
Confidence                                            000                      01122458899999999999999


Q ss_pred             CccccchhHHHHHHHHHhcCcCCCCCCCCc
Q 042116          121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKP  150 (208)
Q Consensus       121 ~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~  150 (208)
                      +.++|+|+|||++|||+.|..||.+.+...
T Consensus       313 gsAVDWWtfGIflYEmLyG~TPFKG~~~~~  342 (459)
T KOG0610|consen  313 GSAVDWWTFGIFLYEMLYGTTPFKGSNNKE  342 (459)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCcCCCCchh
Confidence            999999999999999999999998774443

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.90  E-value=1.1e-23  Score=171.52  Aligned_cols=108  Identities=27%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++........  ......+..|+|||
T Consensus       114 ~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE  188 (297)
T cd05089         114 STLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVK--KTMGRLPVRWMAIE  188 (297)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCeEEECCcCCCccccceec--cCCCCcCccccCch
Confidence            3578889999999999999999998   999999999999999999999999999864321111  11112345699999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      +.....++.++|+|||||++|+|++ |..||...
T Consensus       189 ~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~  222 (297)
T cd05089         189 SLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM  222 (297)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            9988889999999999999999997 99998654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=2.5e-23  Score=173.92  Aligned_cols=108  Identities=25%  Similarity=0.358  Sum_probs=92.7

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......  ......||..|+|
T Consensus       150 ~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~--~~~~~~gt~~y~a  224 (357)
T PHA03209        150 RSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP--AFLGLAGTVETNA  224 (357)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccCc--ccccccccccccC
Confidence            345689999999999999999999998   99999999999999999999999999987532211  1223458999999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ||++.+..++.++|+|||||++|||+++..++.
T Consensus       225 PE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f  257 (357)
T PHA03209        225 PEVLARDKYNSKADIWSAGIVLFEMLAYPSTIF  257 (357)
T ss_pred             CeecCCCCCCchhhHHHHHHHHHHHHHcCCccc
Confidence            999988889999999999999999999766654

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.90  E-value=8.4e-24  Score=169.03  Aligned_cols=109  Identities=24%  Similarity=0.247  Sum_probs=96.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+...+...+..|+++|++|||..   .|+|||||++|+|+...|.+||+|||+|+.+.+... ..+..+-|.+|.|||
T Consensus       172 q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k-~~T~lVVTLWYRaPE  247 (419)
T KOG0663|consen  172 QPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLK-PYTPLVVTLWYRAPE  247 (419)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhcCCcc-cCcceEEEeeecCHH
Confidence            5778888889999999999999999   999999999999999999999999999998865533 234455699999999


Q ss_pred             hhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+. .|++..|+||+||++.|++++++.|.+.
T Consensus       248 LLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~  281 (419)
T KOG0663|consen  248 LLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK  281 (419)
T ss_pred             HhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC
Confidence            88764 5899999999999999999999988766

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.90  E-value=8.9e-24  Score=168.24  Aligned_cols=110  Identities=25%  Similarity=0.298  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++...+.++.|++.||+|||+.   +++||||||+||+++.++.+|++|||.++..............++..|+|||
T Consensus        95 ~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe  171 (256)
T cd05059          95 GKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPE  171 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHH
Confidence            3688999999999999999999998   9999999999999999999999999998765332211111111335799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|++++ |+.||...
T Consensus       172 ~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  205 (256)
T cd05059         172 VFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF  205 (256)
T ss_pred             HhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC
Confidence            9988889999999999999999999 78888643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.90  E-value=1.8e-23  Score=171.03  Aligned_cols=109  Identities=21%  Similarity=0.294  Sum_probs=92.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ......++..|+|||
T Consensus        99 ~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~y~aPE  174 (309)
T cd07872          99 NIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK-TYSNEVVTLWYRPPD  174 (309)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCCcc-ccccccccccccCCH
Confidence            4578888889999999999999998   999999999999999999999999999876433222 112234788999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||+|+++|+|++|+.||...
T Consensus       175 ~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  208 (309)
T cd07872         175 VLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGS  208 (309)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            8864 45789999999999999999999999755

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.90  E-value=2.8e-23  Score=164.75  Aligned_cols=126  Identities=25%  Similarity=0.403  Sum_probs=103.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+...........+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||+++.....
T Consensus        79 e~~~~~-~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~  154 (256)
T cd08529          79 EYAENG-DLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN  154 (256)
T ss_pred             EeCCCC-cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCc
Confidence            333444 455555544556789999999999999999999998   9999999999999999999999999998876433


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... .....++..|+|||+..+..++.++|+||||+++++|++|+.||...
T Consensus       155 ~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  204 (256)
T cd08529         155 TNF-ANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDAN  204 (256)
T ss_pred             cch-hhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            221 12334788999999999888999999999999999999999999744

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.90  E-value=1.3e-23  Score=166.98  Aligned_cols=126  Identities=29%  Similarity=0.386  Sum_probs=102.7

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..++..++.+. .+..  ....++...+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....
T Consensus        76 v~~~~~~~~L~-~~l~--~~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~  149 (260)
T PF00069_consen   76 VMEYCPGGSLQ-DYLQ--KNKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLS  149 (260)
T ss_dssp             EEEEETTEBHH-HHHH--HHSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEEST
T ss_pred             ccccccccccc-cccc--ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence            34445544333 3333  567789999999999999999999999   99999999999999999999999999997642


Q ss_pred             CCCCceeeeeecCCCcCchhhhh-cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      . .........++..|+|||... ...++.++|+||+|+++++|++|+.||...
T Consensus       150 ~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  150 E-NNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             S-TTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1 122233445788999999998 777899999999999999999999999744

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.90  E-value=4.3e-23  Score=164.50  Aligned_cols=127  Identities=21%  Similarity=0.272  Sum_probs=101.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ++..++ .+............++..++.++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus        81 e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05072          81 EYMAKG-SLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDN  156 (261)
T ss_pred             ecCCCC-cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCC
Confidence            334444 444444444556788899999999999999999998   9999999999999999999999999999875432


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........++..|+|||++....++.++|+||||+++|+|++ |+.||...
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  208 (261)
T cd05072         157 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGM  208 (261)
T ss_pred             ceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCC
Confidence            2211112234667999999988888999999999999999998 99998643

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.9e-24  Score=164.67  Aligned_cols=128  Identities=21%  Similarity=0.287  Sum_probs=110.3

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      .+.||-.+|..+..|.. +..+.++......++.|+|.||.|+|..   ++||||+||+|+|++..+..|++|||-+...
T Consensus        99 LilEya~~gel~k~L~~-~~~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~  174 (281)
T KOG0580|consen   99 LILEYAPRGELYKDLQE-GRMKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHA  174 (281)
T ss_pred             EEEEecCCchHHHHHHh-cccccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeec
Confidence            45567777777777664 4667788888889999999999999998   9999999999999999999999999998775


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      +.+..   ...+||.-|.+||+..+...+..+|+|++|++.||++.|.+||....
T Consensus       175 p~~kR---~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~  226 (281)
T KOG0580|consen  175 PSNKR---KTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS  226 (281)
T ss_pred             CCCCc---eeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh
Confidence            43222   34569999999999999999999999999999999999999998653

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-23  Score=167.81  Aligned_cols=128  Identities=21%  Similarity=0.271  Sum_probs=110.0

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.+|.+..+...+   ..++...+..+..+|..||.|||+.   |||+||||..|+|++..|++|++|+|.++.-.
T Consensus       329 vieyv~ggdlmfhmqrq---rklpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~l  402 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGL  402 (593)
T ss_pred             EEEEecCcceeeehhhh---hcCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcCC
Confidence            34788888877665443   4678888889999999999999999   99999999999999999999999999998643


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      ... ...+..+||+.|.|||.+++..|+..+|+|++||+++||+.|+.||+.-..
T Consensus       403 ~~g-d~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm  456 (593)
T KOG0695|consen  403 GPG-DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGM  456 (593)
T ss_pred             CCC-cccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecC
Confidence            322 234567799999999999999999999999999999999999999986543

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.90  E-value=2.5e-23  Score=167.04  Aligned_cols=120  Identities=22%  Similarity=0.285  Sum_probs=99.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~   94 (208)
                      ||..++ .+..+....  ..+++..+..++.|+++||.|||+.   +++||||+|+||+++.++ .++++|||.+.....
T Consensus        89 e~~~~~-~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~  162 (267)
T PHA03390         89 DYIKDG-DLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGT  162 (267)
T ss_pred             EcCCCC-cHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCccceecCC
Confidence            444444 444444332  3789999999999999999999998   999999999999999988 899999999876533


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..     ...++..|+|||++.+..++.++|+||+|+++|+|++|+.||...
T Consensus       163 ~~-----~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  209 (267)
T PHA03390        163 PS-----CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKED  209 (267)
T ss_pred             Cc-----cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            22     224788999999998888999999999999999999999999743

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=1.7e-23  Score=182.13  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhh
Q 042116           37 ESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSK  116 (208)
Q Consensus        37 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  116 (208)
                      .......++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.+............|+..|+|||++.
T Consensus       265 ~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~  341 (501)
T PHA03210        265 LLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILA  341 (501)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhc
Confidence            3456678999999999999998   9999999999999999999999999999876443332223346899999999999


Q ss_pred             cCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116          117 NTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       117 ~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      +..++.++|||||||++|||++|..++.
T Consensus       342 ~~~~~~~~DiwSlGvil~ell~~~~~p~  369 (501)
T PHA03210        342 GDGYCEITDIWSCGLILLDMLSHDFCPI  369 (501)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCc
Confidence            8889999999999999999999986543

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.90  E-value=2e-23  Score=170.53  Aligned_cols=127  Identities=24%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+...........+++...+.++.|++.||+|||+.   +++|+||||+||+++.++.++++|||+++.....
T Consensus       119 e~~~~~-~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~  194 (302)
T cd05055         119 EYCCYG-DLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLARDIMND  194 (302)
T ss_pred             EcCCCC-cHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCcccccccCC
Confidence            344444 444444443444589999999999999999999998   9999999999999999999999999998765433


Q ss_pred             CCce-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRT-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .... .....++..|+|||.+....++.++|+||+|+++|++++ |..||...
T Consensus       195 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~  247 (302)
T cd05055         195 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGM  247 (302)
T ss_pred             CceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCC
Confidence            2211 111235678999999988889999999999999999998 99998654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.90  E-value=1.7e-23  Score=169.60  Aligned_cols=110  Identities=23%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..+++++.|++.||+|||+.   +++||||||+||+++.++.++|+|||.++........ ......++..|+||
T Consensus       115 ~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  191 (288)
T cd05093         115 AELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  191 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCH
Confidence            3589999999999999999999998   9999999999999999999999999998765332211 11122346789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|+||||+++|+|++ |..||...
T Consensus       192 E~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~  226 (288)
T cd05093         192 ESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL  226 (288)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99988889999999999999999998 88888644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.90  E-value=8.3e-24  Score=176.37  Aligned_cols=107  Identities=28%  Similarity=0.275  Sum_probs=93.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ......+|..|+|||+
T Consensus       115 ~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~  189 (355)
T cd07874         115 ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEV  189 (355)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCcccccCCCcc--ccCCccccCCccCHHH
Confidence            477888889999999999999998   99999999999999999999999999997643221  1223458899999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.+..++.++|+|||||++|+|++|+.||...
T Consensus       190 ~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  221 (355)
T cd07874         190 ILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_pred             HcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99888999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-23  Score=176.53  Aligned_cols=128  Identities=20%  Similarity=0.400  Sum_probs=106.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE-cCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM-DEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-~~~~~~kl~dfg~~~~~~~   94 (208)
                      |.-.+|.+|++++++  ...+.+..+.+++.||+.|+.|+|+.   .++||||||+||.+ .+-|.+||.|||++-.+.+
T Consensus        97 ELGD~GDl~DyImKH--e~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~P  171 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKH--EEGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQP  171 (864)
T ss_pred             EecCCchHHHHHHhh--hccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCC
Confidence            344455677787765  45678888889999999999999999   99999999999865 5678899999999987766


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCC-ccccchhHHHHHHHHHhcCcCCCCCCCCc
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPIS-MKANVFNYGVVLLEIVCCRRNMEIDPSKP  150 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~-~~~Di~s~Gv~l~el~tg~~p~~~~~~~~  150 (208)
                      +..  ....+|+..|-|||++.+-.|+ +++||||+||++|-+++|+.||...+..+
T Consensus       172 G~k--L~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSE  226 (864)
T KOG4717|consen  172 GKK--LTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSE  226 (864)
T ss_pred             cch--hhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchh
Confidence            554  3445699999999999988885 67899999999999999999998664443

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.90  E-value=2.9e-23  Score=166.15  Aligned_cols=128  Identities=19%  Similarity=0.204  Sum_probs=99.6

Q ss_pred             EEeCCCCcchHHHHhh---hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRR---ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      +|..++.+...+....   ....+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        87 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  163 (273)
T cd05035          87 PFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSKKI  163 (273)
T ss_pred             eccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCccceeec
Confidence            4444444444443332   224688899999999999999999998   9999999999999999999999999999865


Q ss_pred             CCCCCce-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           93 MPDQTRT-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....... .....++..|+|||.+....++.++|+||||+++|||++ |..||...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~  219 (273)
T cd05035         164 YSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGV  219 (273)
T ss_pred             cccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            4332211 111224567999999988889999999999999999999 88888643

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.90  E-value=1.7e-23  Score=171.01  Aligned_cols=157  Identities=23%  Similarity=0.195  Sum_probs=109.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++........  .....++..|+|||
T Consensus       119 ~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE  193 (303)
T cd05088         119 STLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK--KTMGRLPVRWMAIE  193 (303)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCcEEeCccccCcccchhhh--cccCCCcccccCHH
Confidence            3578899999999999999999998   999999999999999999999999999864211111  11112356799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCCCCCccchhhh---hhhhh----hhhhhhhhhcccCCCCCHHHHHHH
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEIDPSKPEEIVFI---NLTYK----CFIDREFDKLVHGEEVNKKTLENM  185 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~  185 (208)
                      ++....++.++|+||||+++|+++| |..||.............   .+...    .....-+..++...+..++.+.++
T Consensus       194 ~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  273 (303)
T cd05088         194 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI  273 (303)
T ss_pred             HHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence            9988888999999999999999998 999986442211100000   00000    111122334444445566666677


Q ss_pred             HHHHHHHHhc
Q 042116          186 IKSVVMMLEG  195 (208)
Q Consensus       186 ~~~v~~~L~~  195 (208)
                      +..+.++++.
T Consensus       274 l~~l~~~~~~  283 (303)
T cd05088         274 LVSLNRMLEE  283 (303)
T ss_pred             HHHHHHHHHh
Confidence            7666666654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.90  E-value=1.2e-23  Score=167.63  Aligned_cols=110  Identities=26%  Similarity=0.292  Sum_probs=92.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee--eeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF--TLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~g~~~y~a  111 (208)
                      ..+++..+..++.|++.||+|||+.   +++||||||.||+++.++.+||+|||+++..........  ....++..|+|
T Consensus        90 ~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  166 (257)
T cd05116          90 KHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYA  166 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccC
Confidence            4678899999999999999999998   999999999999999999999999999976643332111  11123568999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||.+....++.++|+||||+++||+++ |+.||...
T Consensus       167 PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  202 (257)
T cd05116         167 PECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM  202 (257)
T ss_pred             HhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999988888999999999999999998 99998644

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.90  E-value=1.9e-23  Score=169.36  Aligned_cols=111  Identities=23%  Similarity=0.228  Sum_probs=92.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~a  111 (208)
                      ...+++..+++++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......... .....++..|+|
T Consensus       126 ~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  202 (293)
T cd05053         126 EETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMA  202 (293)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccC
Confidence            45788999999999999999999998   99999999999999999999999999997654322111 111224567999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||.+.+..++.++|+|||||++|++++ |..||...
T Consensus       203 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  238 (293)
T cd05053         203 PEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  238 (293)
T ss_pred             HHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC
Confidence            999988889999999999999999998 88888643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=5.4e-24  Score=177.98  Aligned_cols=108  Identities=24%  Similarity=0.304  Sum_probs=96.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      +.++..+...++..+.+|+.|||.+   +||+|||||+|.+++.+|.+||.|||+++.+..+..  ..+++||+.|.|||
T Consensus       515 g~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~K--TwTFcGTpEYVAPE  589 (732)
T KOG0614|consen  515 GSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRK--TWTFCGTPEYVAPE  589 (732)
T ss_pred             CCcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhccCCc--eeeecCCcccccch
Confidence            4556666668888999999999999   999999999999999999999999999998755443  55677999999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+...+.++|.||+|+++||+++|++||...
T Consensus       590 IILnKGHD~avDyWaLGIli~ELL~G~pPFs~~  622 (732)
T KOG0614|consen  590 IILNKGHDRAVDYWALGILIYELLTGSPPFSGV  622 (732)
T ss_pred             hhhccCcchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence            999888899999999999999999999999865

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=2e-23  Score=166.32  Aligned_cols=109  Identities=26%  Similarity=0.285  Sum_probs=93.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee--eeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF--TLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~g~~~y~a  111 (208)
                      ..++......++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||+++..........  ....++..|+|
T Consensus        99 ~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  175 (263)
T cd06625          99 GALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMS  175 (263)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccC
Confidence            4578888899999999999999998   999999999999999999999999999876533222111  22346788999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ||.+.+..++.++|+||+|+++|++++|+.||..
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  209 (263)
T cd06625         176 PEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAE  209 (263)
T ss_pred             cceeccCCCCchhhhHHHHHHHHHHHhCCCCccc
Confidence            9999888899999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.90  E-value=1.8e-23  Score=166.61  Aligned_cols=109  Identities=23%  Similarity=0.296  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .+++..++.++.|++.||+|||+.   +++|+||||+||+++.++.+||+|||.++..............++..|++||.
T Consensus        96 ~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~  172 (256)
T cd05113          96 RFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV  172 (256)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHH
Confidence            688999999999999999999998   99999999999999999999999999987653322211111224567999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..+..++.++|+||||+++|+|++ |..||...
T Consensus       173 ~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  205 (256)
T cd05113         173 LLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERF  205 (256)
T ss_pred             HhcCcccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence            988889999999999999999998 99998643

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=3e-23  Score=168.02  Aligned_cols=120  Identities=26%  Similarity=0.358  Sum_probs=100.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++...........+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++........  ..
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~  159 (285)
T cd05605          85 GDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET--IR  159 (285)
T ss_pred             CcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc--cc
Confidence            3444444444445789999999999999999999998   999999999999999999999999999876533222  12


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|+..|+|||.+.+..++.++|+||+|+++|++++|+.||...
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~  204 (285)
T cd05605         160 GRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQR  204 (285)
T ss_pred             cccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCC
Confidence            235889999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.90  E-value=1e-23  Score=176.11  Aligned_cols=107  Identities=28%  Similarity=0.286  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......  ......+|..|+|||.
T Consensus       119 ~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~aPE~  193 (359)
T cd07876         119 ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNF--MMTPYVVTRYYRAPEV  193 (359)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCCccccccCc--cCCCCcccCCCCCchh
Confidence            477888889999999999999999   99999999999999999999999999987543221  1223457899999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.+..++.++|+||+||++|+|++|+.||...
T Consensus       194 ~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         194 ILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             ccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            99888999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.90  E-value=2.3e-23  Score=167.22  Aligned_cols=108  Identities=29%  Similarity=0.282  Sum_probs=89.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||+|||+.   +++||||||+||+++.++.+|++|||++........  ......+..|+|||
T Consensus       107 ~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~y~apE  181 (270)
T cd05047         107 STLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK--KTMGRLPVRWMAIE  181 (270)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECCCCCccccchhhh--ccCCCCccccCChH
Confidence            3578899999999999999999998   999999999999999999999999999853211111  11112355799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ++....++.++|+||||+++|+|++ |+.||...
T Consensus       182 ~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  215 (270)
T cd05047         182 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  215 (270)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            9988889999999999999999997 99998643

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.90  E-value=3.4e-23  Score=167.76  Aligned_cols=121  Identities=27%  Similarity=0.339  Sum_probs=101.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++...........++...++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++........  .
T Consensus        84 g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~  158 (285)
T cd05630          84 GGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--I  158 (285)
T ss_pred             CCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc--c
Confidence            34454444444455688999999999999999999998   999999999999999999999999999876533222  1


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....|+..|+|||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~  204 (285)
T cd05630         159 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  204 (285)
T ss_pred             cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence            2235889999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.90  E-value=2.3e-23  Score=166.97  Aligned_cols=128  Identities=20%  Similarity=0.237  Sum_probs=100.8

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|+.++.+ ..+........+++..+..++.|++.||+|||+.   +|+|+||||+||+++.++.++|+|||++....
T Consensus        87 v~e~~~~~~L-~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~  162 (272)
T cd06637          87 VMEFCGAGSV-TDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  162 (272)
T ss_pred             EEEcCCCCcH-HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCCCceecc
Confidence            3444444444 4444444455688999999999999999999998   99999999999999999999999999987653


Q ss_pred             CCCCceeeeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......|+..|+|||++.     ...++.++|+|||||++|+|++|+.||...
T Consensus       163 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~  219 (272)
T cd06637         163 RTVG-RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  219 (272)
T ss_pred             cccc-cCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            3221 122345888999999985     335788999999999999999999998643

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.90  E-value=5.1e-23  Score=164.60  Aligned_cols=127  Identities=21%  Similarity=0.258  Sum_probs=100.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+...........+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||.++.....
T Consensus        80 e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~  155 (262)
T cd05071          80 EYMSKG-SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN  155 (262)
T ss_pred             EcCCCC-cHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeecccc
Confidence            333444 444444443445678999999999999999999998   9999999999999999999999999999765433


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........++..|++||+.....++.++|+||||+++|++++ |..||...
T Consensus       156 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~  207 (262)
T cd05071         156 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  207 (262)
T ss_pred             ccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            2221122235667999999988889999999999999999999 78888643

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.90  E-value=3.5e-23  Score=172.61  Aligned_cols=106  Identities=27%  Similarity=0.410  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhh
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS  115 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~  115 (208)
                      ........++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......|+..|+|||++
T Consensus       165 ~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~-~~~~~~gt~~y~aPE~~  240 (353)
T PLN00034        165 ADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMD-PCNSSVGTIAYMSPERI  240 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceecccccc-cccccccCccccCcccc
Confidence            45667778999999999999998   999999999999999999999999999987533221 12234589999999987


Q ss_pred             hc-----CCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          116 KN-----TPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       116 ~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ..     ...+.++|||||||++|+|++|+.||..
T Consensus       241 ~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  275 (353)
T PLN00034        241 NTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGV  275 (353)
T ss_pred             ccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence            43     2235689999999999999999999973

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.90  E-value=6.5e-23  Score=165.41  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=91.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..+.+++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........ ......+++.|+||
T Consensus       119 ~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05091         119 STLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSP  195 (283)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCH
Confidence            3578888899999999999999998   9999999999999999999999999998765332211 11222356789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+....++.++|+||||+++|||++ |..||...
T Consensus       196 E~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  230 (283)
T cd05091         196 EAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY  230 (283)
T ss_pred             HHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC
Confidence            99988889999999999999999998 77787643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.90  E-value=3.9e-23  Score=164.78  Aligned_cols=128  Identities=22%  Similarity=0.278  Sum_probs=100.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++ .+...........+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||.+.....
T Consensus        79 ~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~  154 (260)
T cd05070          79 TEYMSKG-SLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIED  154 (260)
T ss_pred             EEecCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccC
Confidence            3344443 444444444455689999999999999999999998   999999999999999999999999999976543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..........++..|+|||+.....++.++|+||||+++|++++ |..||...
T Consensus       155 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  207 (260)
T cd05070         155 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             cccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            22211112224567999999988888999999999999999999 88888643

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.90  E-value=2.6e-23  Score=165.33  Aligned_cols=127  Identities=20%  Similarity=0.201  Sum_probs=101.2

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ++..++.+...+... ....+++.....++.|++.||+|||+.   +++|+||+|+||+++.++.+||+|||+++.....
T Consensus        75 e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~  150 (257)
T cd05040          75 ELAPLGSLLDRLRKD-ALGHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQN  150 (257)
T ss_pred             EecCCCcHHHHHHhc-ccccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEecccccccccccc
Confidence            444444444444433 225789999999999999999999998   9999999999999999999999999999876432


Q ss_pred             CCc--eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTR--TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...  ......++..|+|||++.+..++.++|+||||+++|+|++ |..||...
T Consensus       151 ~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  204 (257)
T cd05040         151 EDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL  204 (257)
T ss_pred             ccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            221  1112336778999999988889999999999999999999 99998643

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.90  E-value=3.1e-23  Score=169.24  Aligned_cols=110  Identities=24%  Similarity=0.213  Sum_probs=91.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++......... .....++..|+||
T Consensus       132 ~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aP  208 (304)
T cd05101         132 EQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAP  208 (304)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCc
Confidence            4578888999999999999999998   99999999999999999999999999998664322211 1122345679999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++||||||+++|++++ |..||...
T Consensus       209 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  243 (304)
T cd05101         209 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  243 (304)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence            99988889999999999999999998 77777543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.89  E-value=6.6e-23  Score=185.80  Aligned_cols=109  Identities=26%  Similarity=0.363  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-----------------
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-----------------   97 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-----------------   97 (208)
                      ..++..+++++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++.......                 
T Consensus       109 ~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~  185 (932)
T PRK13184        109 KTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSM  185 (932)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEecCcceeccccccccccccccccccccccc
Confidence            455677889999999999999998   999999999999999999999999999986521110                 


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .......||+.|+|||++.+..++.++|+|||||++|+|+||+.||...
T Consensus       186 t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~  234 (932)
T PRK13184        186 TIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRK  234 (932)
T ss_pred             ccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCc
Confidence            0011235899999999999888999999999999999999999999753

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.89  E-value=5e-23  Score=164.55  Aligned_cols=126  Identities=20%  Similarity=0.335  Sum_probs=100.4

Q ss_pred             EEeCCCCcchHHHHhh--hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           16 EVKGKRKQFGAVVRRR--ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +|..++ .+..+....  ....++....+.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++....
T Consensus        82 e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228          82 ELADAG-DLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EecCCC-cHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            344433 444444322  234578888899999999999999998   99999999999999999999999999987754


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... .....++..|+|||.+.+..++.++|+||||+++|++++|+.||...
T Consensus       158 ~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~  209 (267)
T cd08228         158 SKTTA-AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             chhHH-HhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccc
Confidence            32211 12234788899999998888899999999999999999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.89  E-value=3.2e-23  Score=164.89  Aligned_cols=110  Identities=21%  Similarity=0.313  Sum_probs=92.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||.|||+.   +++||||+|+||+++.++.++++|||.++..............++..|+|||
T Consensus        95 ~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE  171 (256)
T cd05114          95 GKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPE  171 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChh
Confidence            3578899999999999999999998   9999999999999999999999999998764322221111222456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ++.+..++.++|+||||+++|++++ |+.||...
T Consensus       172 ~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~  205 (256)
T cd05114         172 VFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK  205 (256)
T ss_pred             hcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            9988889999999999999999999 89998644

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.89  E-value=1.9e-23  Score=168.69  Aligned_cols=110  Identities=25%  Similarity=0.285  Sum_probs=92.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce--eeeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~~g~~~y~a  111 (208)
                      ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++.........  .....++..|+|
T Consensus       102 ~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (283)
T cd05080         102 HKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA  178 (283)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeC
Confidence            4589999999999999999999998   99999999999999999999999999987654322211  111224567999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+....++.++|+||||+++|+|++|..|+...
T Consensus       179 PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~  213 (283)
T cd05080         179 VECLKENKFSYASDVWSFGVTLYELLTHCDSKQSP  213 (283)
T ss_pred             HhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCC
Confidence            99998888899999999999999999999998644

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2e-23  Score=178.45  Aligned_cols=140  Identities=25%  Similarity=0.303  Sum_probs=112.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC--
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM--   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~--   93 (208)
                      +|..+|.....|.+   .+-+++..+..++.++..|+.++|..   |+|||||||.|||||.+|++||+|||+|.-+.  
T Consensus       709 dYIPGGDmMSLLIr---mgIFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWT  782 (1034)
T KOG0608|consen  709 DYIPGGDMMSLLIR---MGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  782 (1034)
T ss_pred             eccCCccHHHHHHH---hccCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeeeeccccccceec
Confidence            44455555555444   34566777778899999999999999   99999999999999999999999999996442  


Q ss_pred             -------CCC------------------------------C-c-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHH
Q 042116           94 -------PDQ------------------------------T-R-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLL  134 (208)
Q Consensus        94 -------~~~------------------------------~-~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~  134 (208)
                             .+.                              . . ..-..+||+.|+|||++....++..+|+||.||+||
T Consensus       783 HdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~  862 (1034)
T KOG0608|consen  783 HDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILY  862 (1034)
T ss_pred             cccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHH
Confidence                   000                              0 0 011235999999999999888999999999999999


Q ss_pred             HHHhcCcCCCCCCCCccchhhhhhhhh
Q 042116          135 EIVCCRRNMEIDPSKPEEIVFINLTYK  161 (208)
Q Consensus       135 el~tg~~p~~~~~~~~~~~~~~~~~~~  161 (208)
                      ||+.|+.||..+...+.+..+++|.-.
T Consensus       863 em~~g~~pf~~~tp~~tq~kv~nw~~~  889 (1034)
T KOG0608|consen  863 EMLVGQPPFLADTPGETQYKVINWRNF  889 (1034)
T ss_pred             HHhhCCCCccCCCCCcceeeeeehhhc
Confidence            999999999988777778888888643

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-23  Score=163.53  Aligned_cols=112  Identities=27%  Similarity=0.399  Sum_probs=94.5

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      +-...+++...=++...+..||.||.++.  +|+|||+||+|||+|..|.+|+||||.+..+......  +...|.+.||
T Consensus       183 rik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAh--trsAGC~~YM  258 (391)
T KOG0983|consen  183 RIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAH--TRSAGCAAYM  258 (391)
T ss_pred             HhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccccc--ccccCCcccc
Confidence            34456778877889999999999998753  9999999999999999999999999999877554432  2233888999


Q ss_pred             chhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.   ...|+.++|+||||+.++|+.||+.||...
T Consensus       259 aPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c  297 (391)
T KOG0983|consen  259 APERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGC  297 (391)
T ss_pred             CccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCC
Confidence            999885   345788999999999999999999999875

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.89  E-value=6.3e-23  Score=168.31  Aligned_cols=110  Identities=22%  Similarity=0.204  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aP  112 (208)
                      ..+++...++++.|++.||.|||+.   +++||||||+||+++.++.+||+|||.++......... .....++..|+||
T Consensus       129 ~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (314)
T cd05099         129 EQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAP  205 (314)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHC---CeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCH
Confidence            4588899999999999999999998   99999999999999999999999999997653221111 1111234579999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++|+||||+++|++++ |..||...
T Consensus       206 E~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  240 (314)
T cd05099         206 EALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGI  240 (314)
T ss_pred             HHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCC
Confidence            99988889999999999999999999 88888643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.89  E-value=7.5e-24  Score=159.62  Aligned_cols=111  Identities=27%  Similarity=0.413  Sum_probs=93.6

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++...=+|+..+..||.|||++-  .+||||+||+|||++.+|++|+||||.+..+..+-..+  ...|...|+|
T Consensus       141 ~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt--~daGCkpYma  216 (282)
T KOG0984|consen  141 KGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKT--MDAGCKPYMA  216 (282)
T ss_pred             cCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceeehhhhHHH--HhcCCCccCC
Confidence            4567778888899999999999999863  89999999999999999999999999998775443322  1237789999


Q ss_pred             hhhhh----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSK----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.    ...|+.++||||+|+++.||.+++.|+..-
T Consensus       217 PEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  217 PERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             hhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc
Confidence            99874    336899999999999999999999998643

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.89  E-value=5.6e-23  Score=166.44  Aligned_cols=120  Identities=25%  Similarity=0.334  Sum_probs=100.2

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++...........+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++........  ..
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~  159 (285)
T cd05632          85 GDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES--IR  159 (285)
T ss_pred             ccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc--cc
Confidence            3444444333445789999999999999999999998   999999999999999999999999999876533221  22


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|+..|+|||++.+..++.++|+||||+++|++++|..||...
T Consensus       160 ~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~  204 (285)
T cd05632         160 GRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGR  204 (285)
T ss_pred             CCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            335899999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.89  E-value=2.9e-23  Score=165.28  Aligned_cols=125  Identities=24%  Similarity=0.250  Sum_probs=98.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++.+...+. ..  ..+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||.++.....
T Consensus        75 e~~~~~~L~~~l~-~~--~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~  148 (257)
T cd05060          75 ELAPLGPLLKYLK-KR--REIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAG  148 (257)
T ss_pred             EeCCCCcHHHHHH-hC--CCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecC
Confidence            3444444444433 22  3688999999999999999999998   9999999999999999999999999998766433


Q ss_pred             CCceee--eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFT--LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~--~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ......  ...++..|+|||.+.+..++.++|+||||+++|++++ |..||...
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~  202 (257)
T cd05060         149 SDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM  202 (257)
T ss_pred             CcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC
Confidence            321111  1113457999999988889999999999999999998 99998644

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.89  E-value=3e-23  Score=169.00  Aligned_cols=109  Identities=23%  Similarity=0.354  Sum_probs=94.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||.+......... .....+++.|+|||
T Consensus       111 ~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE  186 (296)
T cd06654         111 TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVGTPYWMAPE  186 (296)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhccccccc-cCcccCCccccCHH
Confidence            4578889999999999999999998   9999999999999999999999999998764332211 12234788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+|||||++|+|++|+.||...
T Consensus       187 ~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~  219 (296)
T cd06654         187 VVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (296)
T ss_pred             HHcCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.89  E-value=4.3e-23  Score=166.00  Aligned_cols=110  Identities=23%  Similarity=0.246  Sum_probs=92.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++.....++.|++.|++|||+.   +++||||||+||+++.++.++|+|||+++........ ......++..|+||
T Consensus       117 ~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05049         117 GELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPP  193 (280)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecCh
Confidence            4578888999999999999999998   9999999999999999999999999998764322211 11122346789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|+||||+++|+|++ |..||...
T Consensus       194 E~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~  228 (280)
T cd05049         194 ESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL  228 (280)
T ss_pred             hhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            99998899999999999999999998 99998644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=6.4e-23  Score=168.15  Aligned_cols=123  Identities=22%  Similarity=0.260  Sum_probs=100.8

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--   98 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--   98 (208)
                      ++++..+........+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.........  
T Consensus        85 ~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  161 (316)
T cd05574          85 GGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVS  161 (316)
T ss_pred             CCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhcccccccccc
Confidence            44555555555557789999999999999999999998   9999999999999999999999999998654321110  


Q ss_pred             --------------------------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 --------------------------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 --------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                                                ......|+..|+|||++.+..++.++|+||||+++|++++|+.||...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  235 (316)
T cd05574         162 KALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGS  235 (316)
T ss_pred             cccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCC
Confidence                                      011234788899999998888899999999999999999999999644

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.89  E-value=1.6e-22  Score=161.30  Aligned_cols=129  Identities=20%  Similarity=0.289  Sum_probs=102.4

Q ss_pred             ceEEeCCCCcchHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           14 GCEVKGKRKQFGAVVRR-RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ..+|..++.+...+... .....++...++.++.+++.||.|||+.   +++|+||+|+||+++.++.++++|||++...
T Consensus        80 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~  156 (267)
T cd08224          80 VLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFF  156 (267)
T ss_pred             EEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeec
Confidence            34455554444433322 2235578899999999999999999998   9999999999999999999999999998765


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...... .....++..|.|||.+.+..++.++|+||||+++|++++|+.||...
T Consensus       157 ~~~~~~-~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  209 (267)
T cd08224         157 SSKTTA-AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             cCCCcc-cceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccC
Confidence            432221 22234788899999998888999999999999999999999998644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.89  E-value=5.5e-23  Score=164.68  Aligned_cols=130  Identities=19%  Similarity=0.193  Sum_probs=94.5

Q ss_pred             ceEEeCCCCcchHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           14 GCEVKGKRKQFGAVVRRRE--NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..+|..++.+...+.....  ....++...+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..
T Consensus        73 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  149 (269)
T cd05042          73 VLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             EEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccc
Confidence            3445444444444333222  23346777889999999999999998   999999999999999999999999999865


Q ss_pred             cCCCCCc-eeeeeecCCCcCchhhhhc-------CCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           92 LMPDQTR-TFTLIRGTRGYMAPEWSKN-------TPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~-~~~~~~g~~~y~aPE~~~~-------~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....... ......++..|+|||++..       ..++.++|+|||||++|+|++ |..||...
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  213 (269)
T cd05042         150 QYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL  213 (269)
T ss_pred             cccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            4322111 1111224667999998743       346789999999999999999 77787543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.89  E-value=5e-23  Score=166.31  Aligned_cols=123  Identities=24%  Similarity=0.273  Sum_probs=99.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+...+.   ....+++.....++.|++.||.|||+.   +++||||||+||+++.++.++++|||++.....
T Consensus        76 ~e~~~~~~L~~~i~---~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~  149 (279)
T cd05633          76 LDLMNGGDLHYHLS---QHGVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK  149 (279)
T ss_pred             EecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccc
Confidence            34444444433332   234689999999999999999999998   999999999999999999999999999875532


Q ss_pred             CCCceeeeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...   ....|+..|+|||.+.. ..++.++|+||+||++|++++|+.||...
T Consensus       150 ~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  199 (279)
T cd05633         150 KKP---HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (279)
T ss_pred             cCc---cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCC
Confidence            221   12348899999998864 55789999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.89  E-value=6.7e-23  Score=163.52  Aligned_cols=126  Identities=22%  Similarity=0.294  Sum_probs=100.2

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~   96 (208)
                      |..++ .+...........+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        81 ~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05069          81 FMGKG-SLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             cCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCc
Confidence            33444 444444444455688999999999999999999998   99999999999999999999999999997653322


Q ss_pred             CceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           97 TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        97 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ........++..|+|||...+..++.++|+||||+++|++++ |+.||...
T Consensus       157 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  207 (260)
T cd05069         157 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             ccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            211112235667999999988889999999999999999999 88888643

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.89  E-value=7.2e-23  Score=163.36  Aligned_cols=126  Identities=22%  Similarity=0.292  Sum_probs=98.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ ++...... ....+++..+++++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++......
T Consensus        74 e~~~~~-~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  148 (257)
T cd05115          74 EMASGG-PLNKFLSG-KKDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             EeCCCC-CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCC
Confidence            344444 34433322 345788999999999999999999998   9999999999999999999999999998765433


Q ss_pred             CCcee--eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTF--TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~--~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....  ....++..|+|||.+....++.++|+||||+++|++++ |..||...
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  202 (257)
T cd05115         149 DSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKM  202 (257)
T ss_pred             ccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence            22111  11123567999999988888999999999999999996 99998644

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.89  E-value=1e-22  Score=162.76  Aligned_cols=126  Identities=20%  Similarity=0.355  Sum_probs=101.1

Q ss_pred             EEeCCCCcchHHHHh--hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           16 EVKGKRKQFGAVVRR--RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +|..++ .+..+...  .....+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++....
T Consensus        82 e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd08229          82 ELADAG-DLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EecCCC-CHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhccc
Confidence            333333 44444432  2345688999999999999999999998   99999999999999999999999999987653


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... .....++..|+|||++.+..++.++|+||||+++|+|++|..||...
T Consensus       158 ~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  209 (267)
T cd08229         158 SKTTA-AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             cCCcc-cccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            32221 12234788999999998888999999999999999999999998644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-23  Score=161.75  Aligned_cols=133  Identities=21%  Similarity=0.221  Sum_probs=102.6

Q ss_pred             eEEeCCCCcchHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRRREN-KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +.|...|.+++.+...... ..++....++|+.++++||.+||+. .++..||||||.|||+..++.+++.|||.+....
T Consensus       102 ~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~  180 (302)
T KOG2345|consen  102 LPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAP  180 (302)
T ss_pred             eehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccc
Confidence            4445555566655554433 4789999999999999999999997 4569999999999999999999999999986542


Q ss_pred             CC---CCc--ee---eeeecCCCcCchhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           94 PD---QTR--TF---TLIRGTRGYMAPEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        94 ~~---~~~--~~---~~~~g~~~y~aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      -.   ...  ..   .....|..|+|||.+.   +...+.++|||||||++|.|+.|..||...-.
T Consensus       181 i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~  246 (302)
T KOG2345|consen  181 IQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ  246 (302)
T ss_pred             eEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh
Confidence            11   110  00   1123688999999875   34468999999999999999999999986533

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.89  E-value=3.7e-23  Score=166.44  Aligned_cols=109  Identities=21%  Similarity=0.259  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      ..++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++|||+++......... .....++..|+|||
T Consensus       115 ~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05062         115 PPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPE  191 (277)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChh
Confidence            357788889999999999999998   99999999999999999999999999987543322211 11123467899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ++.+..++.++|+||||+++|++++ |..||...
T Consensus       192 ~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~  225 (277)
T cd05062         192 SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM  225 (277)
T ss_pred             HhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9988889999999999999999999 67887543

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.89  E-value=1.5e-22  Score=152.53  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=88.8

Q ss_pred             chHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeee
Q 042116           24 FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI  103 (208)
Q Consensus        24 ~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~  103 (208)
                      +.++... ....+++..+..++.|++.||.|||+.   +      ||+||+++.++.+++  ||.+.......      .
T Consensus         3 L~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~------~   64 (176)
T smart00750        3 LADILEV-RGRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQ------S   64 (176)
T ss_pred             HHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeecccc------C
Confidence            3344432 245689999999999999999999998   4      999999999999998  99987653322      1


Q ss_pred             ecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       104 ~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .|++.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus        65 ~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~  107 (176)
T smart00750       65 RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEE  107 (176)
T ss_pred             CCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            4789999999999999999999999999999999999998644

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.89  E-value=3.5e-23  Score=166.91  Aligned_cols=111  Identities=23%  Similarity=0.314  Sum_probs=93.1

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....++...+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++........ ......++..|+|
T Consensus        94 ~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~a  169 (285)
T cd07861          94 KGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR-VYTHEVVTLWYRA  169 (285)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc-cccCCcccccccC
Confidence            336789999999999999999999998   999999999999999999999999999876532211 1122346788999


Q ss_pred             hhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+. .++.++|+||||+++|+|+||+.||...
T Consensus       170 PE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         170 PEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             hHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            9988653 4688999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.89  E-value=7.1e-23  Score=162.66  Aligned_cols=125  Identities=22%  Similarity=0.346  Sum_probs=101.2

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +++.++ ++...........+++..+..++.+++.|++|||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        80 e~~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~  155 (257)
T cd08223          80 GFCEGG-DLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ  155 (257)
T ss_pred             cccCCC-cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEeccc
Confidence            333343 344444433445689999999999999999999998   9999999999999999999999999998766332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      .. ......+++.|+|||...+..++.++|+||+|++++++++|+.||..
T Consensus       156 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~  204 (257)
T cd08223         156 CD-MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNA  204 (257)
T ss_pred             CC-ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence            22 12233478899999999888889999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=8.3e-23  Score=190.07  Aligned_cols=132  Identities=17%  Similarity=0.333  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .++|..+.+++.|+|+|++|||..+.++|+|||+||+||+++.++..++. |+.........     ...++..|+|||+
T Consensus       776 ~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~-----~~~~t~~y~aPE~  849 (968)
T PLN00113        776 NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDT-----KCFISSAYVAPET  849 (968)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCC-----CccccccccCccc
Confidence            37899999999999999999997777799999999999999998888775 55543321111     1247889999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhhhhhhhhhhhhcccC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVHG  174 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  174 (208)
                      +.+..++.++|||||||++|||+||+.||....  ........|+............+|+
T Consensus       850 ~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  907 (968)
T PLN00113        850 RETKDITEKSDIYGFGLILIELLTGKSPADAEF--GVHGSIVEWARYCYSDCHLDMWIDP  907 (968)
T ss_pred             ccCCCCCcccchhhHHHHHHHHHhCCCCCCccc--CCCCcHHHHHHHhcCccchhheeCc
Confidence            998889999999999999999999999986432  2223344555444333333334443

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.89  E-value=1.1e-22  Score=163.95  Aligned_cols=110  Identities=19%  Similarity=0.293  Sum_probs=92.4

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..++.++.|+++||.|||+.   +++||||||+||+++.++.++|+|||+++....... ......++..|+||
T Consensus        93 ~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~aP  168 (284)
T cd07839          93 NGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR-CYSAEVVTLWYRPP  168 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC-CcCCCccccCCcCh
Confidence            35689999999999999999999998   999999999999999999999999999876533221 12223467889999


Q ss_pred             hhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+. .++.++|+|||||++|+|++|..|+...
T Consensus       169 E~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~  203 (284)
T cd07839         169 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  203 (284)
T ss_pred             HHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCC
Confidence            988664 4688999999999999999999987543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.89  E-value=1e-22  Score=161.82  Aligned_cols=123  Identities=20%  Similarity=0.261  Sum_probs=95.9

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-------cEEEEec
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-------TAKISDF   86 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-------~~kl~df   86 (208)
                      ..+|..++. +........ ..+++..++.++.|++.||+|||+.   +|+||||||+||+++.++       .++++||
T Consensus        78 v~e~~~~~~-L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Df  152 (259)
T cd05037          78 VEEYVKFGP-LDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDP  152 (259)
T ss_pred             EEEcCCCCc-HHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCCC
Confidence            334455544 443333322 2688899999999999999999998   999999999999999887       7999999


Q ss_pred             CCceecCCCCCceeeeeecCCCcCchhhhhcC--CCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           87 GLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNT--PISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        87 g~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~--~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.....     .....++..|+|||++...  .++.++|+||||+++|++++ |..|+...
T Consensus       153 g~a~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~  210 (259)
T cd05037         153 GIPITVLS-----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTL  210 (259)
T ss_pred             Cccccccc-----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccC
Confidence            99876533     1122356789999998776  68899999999999999999 46666543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.89  E-value=1.4e-22  Score=161.59  Aligned_cols=121  Identities=23%  Similarity=0.307  Sum_probs=98.5

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++...+.++.|++.||+|||+.   +++||||||+||+++.++.++++|||.+.............
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05067          86 SLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREG  162 (260)
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccC
Confidence            444444444456788999999999999999999998   99999999999999999999999999987764222211122


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..++..|+|||++....++.++|+||||+++|++++ |+.||...
T Consensus       163 ~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  207 (260)
T cd05067         163 AKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGM  207 (260)
T ss_pred             CcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            235678999999988888999999999999999999 99998644

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.89  E-value=9.5e-23  Score=162.48  Aligned_cols=108  Identities=23%  Similarity=0.325  Sum_probs=88.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce---eeeeecCCCcC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT---FTLIRGTRGYM  110 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~~g~~~y~  110 (208)
                      ...++...+.++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++.........   .....++..|+
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~  169 (262)
T cd05058          93 HNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWM  169 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCcccc
Confidence            4467777889999999999999998   99999999999999999999999999987543221111   11223566899


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHhcC-cCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVCCR-RNME  144 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~-~p~~  144 (208)
                      |||.+....++.++|+||||+++|||++|. .||.
T Consensus       170 aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~  204 (262)
T cd05058         170 ALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  204 (262)
T ss_pred             ChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999998888999999999999999999965 4554

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.89  E-value=6e-23  Score=165.69  Aligned_cols=110  Identities=21%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.|++|||+.   +++||||||+||+++.++.++|+|||++.......... .....++..|+||
T Consensus       117 ~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05092         117 GQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP  193 (280)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCH
Confidence            3578899999999999999999998   99999999999999999999999999987653322111 1112246789999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|+|||||++|+|++ |..||...
T Consensus       194 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  228 (280)
T cd05092         194 ESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQL  228 (280)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccC
Confidence            99988889999999999999999998 88888543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.1e-22  Score=171.42  Aligned_cols=121  Identities=24%  Similarity=0.388  Sum_probs=98.7

Q ss_pred             CCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc
Q 042116           19 GKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR   98 (208)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~   98 (208)
                      .+...+..+...+......| .++.+..|++.|+.++|++   ||||.||||.|.|+-. |.+||+|||.|.....+.+.
T Consensus       441 ~Gd~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~DTTs  515 (677)
T KOG0596|consen  441 CGDIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLVK-GRLKLIDFGIANAIQPDTTS  515 (677)
T ss_pred             cccccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEEe-eeEEeeeechhcccCccccc
Confidence            34456777776655555545 6678899999999999999   9999999999999864 58999999999988766554


Q ss_pred             e-eeeeecCCCcCchhhhhcCC-----------CCccccchhHHHHHHHHHhcCcCCC
Q 042116           99 T-FTLIRGTRGYMAPEWSKNTP-----------ISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        99 ~-~~~~~g~~~y~aPE~~~~~~-----------~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      . ....+||+.||+||.+....           .++++||||+||++|+|+.|+.||.
T Consensus       516 I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~  573 (677)
T KOG0596|consen  516 IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFG  573 (677)
T ss_pred             eeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchH
Confidence            3 23567999999999885322           4688999999999999999999996

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.89  E-value=5.4e-23  Score=168.12  Aligned_cols=109  Identities=25%  Similarity=0.213  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      .+++..+++++.|++.||+|||+.   +++||||||+||+++.++.++|+|||.++......... .....++..|+|||
T Consensus       136 ~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE  212 (307)
T cd05098         136 QLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPE  212 (307)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChH
Confidence            578899999999999999999998   99999999999999999999999999987653221111 11112346799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|+|++ |..||...
T Consensus       213 ~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~  246 (307)
T cd05098         213 ALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  246 (307)
T ss_pred             HhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9988889999999999999999998 88888543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.89  E-value=8.3e-23  Score=164.87  Aligned_cols=122  Identities=23%  Similarity=0.278  Sum_probs=99.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+.....  ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus        77 e~~~g~-~L~~~l~--~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~  150 (278)
T cd05606          77 DLMNGG-DLHYHLS--QHGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  150 (278)
T ss_pred             ecCCCC-cHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCcc
Confidence            344444 3433332  345689999999999999999999998   9999999999999999999999999998755322


Q ss_pred             CCceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..   ....|+..|+|||.+..+ .++.++|+||+|+++|+|++|+.||...
T Consensus       151 ~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         151 KP---HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             CC---cCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            21   123488999999998754 5789999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.89  E-value=4.8e-23  Score=165.46  Aligned_cols=108  Identities=22%  Similarity=0.273  Sum_probs=91.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++........ ......++..|+|||
T Consensus       115 ~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05032         115 PPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPE  191 (277)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHH
Confidence            468888999999999999999998   9999999999999999999999999998765332211 111223567899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      .+....++.++|+||||+++|++++ |..||..
T Consensus       192 ~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  224 (277)
T cd05032         192 SLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQG  224 (277)
T ss_pred             HHhcCCCCcccchHHHHHHHHHhhccCCCCCcc
Confidence            9988889999999999999999998 8888864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.89  E-value=5.9e-23  Score=187.00  Aligned_cols=130  Identities=21%  Similarity=0.243  Sum_probs=99.3

Q ss_pred             eEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCC----CCeEEeCCCCCcEEEcC------------
Q 042116           15 CEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECE----APIIHCDIKPHNILMDE------------   77 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~----~~iiHrdlk~~nill~~------------   77 (208)
                      .+|+.++.+...+.... ....+++..++.|+.||+.||.|||+...    .+|+||||||+|||++.            
T Consensus        93 MEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~  172 (1021)
T PTZ00266         93 MEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQA  172 (1021)
T ss_pred             EeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccc
Confidence            34455555555444332 23578999999999999999999998521    25999999999999964            


Q ss_pred             -----CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           78 -----FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        78 -----~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                           ...+||+|||++........  .....||+.|+|||++..  ..++.++|||||||++|+|++|+.||...
T Consensus       173 ~n~ng~~iVKLsDFGlAr~l~~~s~--~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~  246 (1021)
T PTZ00266        173 NNLNGRPIAKIGDFGLSKNIGIESM--AHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA  246 (1021)
T ss_pred             cccCCCCceEEccCCcccccccccc--ccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence                 23489999999976533221  223458999999999854  45789999999999999999999999754

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.89  E-value=8.8e-23  Score=161.62  Aligned_cols=126  Identities=22%  Similarity=0.238  Sum_probs=98.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++.+...+ .. ....+++..++.++.|++.||.|+|+.   +++|+||+|+||+++.++.++++|||++......
T Consensus        72 e~~~~~~L~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~  146 (250)
T cd05085          72 ELVPGGDFLSFL-RK-KKDELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDG  146 (250)
T ss_pred             ECCCCCcHHHHH-Hh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceecccc
Confidence            444444444333 22 234578999999999999999999998   9999999999999999999999999998754322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........++..|+|||++....++.++|+||||+++|++++ |..||...
T Consensus       147 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~  198 (250)
T cd05085         147 IYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM  198 (250)
T ss_pred             ccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            2111111224567999999988888999999999999999998 99998643

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.89  E-value=8e-23  Score=166.90  Aligned_cols=127  Identities=22%  Similarity=0.280  Sum_probs=99.6

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+...+..  ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        87 ~e~~~~g~l~~~~~~--~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~  161 (303)
T cd05110          87 TQLMPHGCLLDYVHE--HKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEG  161 (303)
T ss_pred             ehhcCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEccccccccccC
Confidence            445555555444332  233578888899999999999999998   999999999999999999999999999986543


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .... ......++..|++||++.+..++.++|+||||+++|++++ |..||...
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~  215 (303)
T cd05110         162 DEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI  215 (303)
T ss_pred             cccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            2221 1111224668999999988889999999999999999998 88988644

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.89  E-value=7.6e-23  Score=166.34  Aligned_cols=109  Identities=24%  Similarity=0.352  Sum_probs=94.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++........ ......++..|+|||
T Consensus       113 ~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE  188 (292)
T cd06658         113 TRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP-KRKSLVGTPYWMAPE  188 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc-cCceeecCccccCHH
Confidence            4678899999999999999999998   999999999999999999999999999865432221 112345788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|++++|+.||...
T Consensus       189 ~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  221 (292)
T cd06658         189 VISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNE  221 (292)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            998888999999999999999999999998743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.89  E-value=1.1e-22  Score=163.02  Aligned_cols=130  Identities=18%  Similarity=0.161  Sum_probs=97.2

Q ss_pred             ceEEeCCCCcchHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           14 GCEVKGKRKQFGAVVRRRE--NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..||..++.+...+.....  ....++..+..++.|++.|++|||+.   +++||||||+||+++.++.++++|||.+..
T Consensus        73 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~  149 (269)
T cd05087          73 VMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHN  149 (269)
T ss_pred             EEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCcccccc
Confidence            4455555555444443322  23456777888999999999999998   999999999999999999999999999865


Q ss_pred             cCCCCCce-eeeeecCCCcCchhhhhcC-------CCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           92 LMPDQTRT-FTLIRGTRGYMAPEWSKNT-------PISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~-~~~~~g~~~y~aPE~~~~~-------~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ........ .....++..|+|||++...       .++.++|+||||+++|+|++ |+.||...
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  213 (269)
T cd05087         150 KYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHL  213 (269)
T ss_pred             ccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCC
Confidence            43222111 1122357789999988532       35789999999999999996 99999643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.89  E-value=1.2e-22  Score=161.05  Aligned_cols=111  Identities=27%  Similarity=0.293  Sum_probs=95.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~a  111 (208)
                      ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+........ .......++..|+|
T Consensus        99 ~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  175 (262)
T cd00192          99 KSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMA  175 (262)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccC
Confidence            46789999999999999999999998   999999999999999999999999999987644321 11222346788999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||.+....++.++|+||+|+++|+|++ |..||...
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  211 (262)
T cd00192         176 PESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL  211 (262)
T ss_pred             HHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC
Confidence            999988888999999999999999999 58888654

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.89  E-value=8.3e-23  Score=164.92  Aligned_cols=110  Identities=23%  Similarity=0.243  Sum_probs=92.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++...+.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++........ ......++..|+||
T Consensus       119 ~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05090         119 SSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPP  195 (283)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecCh
Confidence            3578888899999999999999998   9999999999999999999999999999765332221 11222346679999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|+||||+++|+|++ |..||...
T Consensus       196 E~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~  230 (283)
T cd05090         196 EAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF  230 (283)
T ss_pred             HHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            99988889999999999999999998 88888643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.89  E-value=1.6e-22  Score=162.02  Aligned_cols=127  Identities=19%  Similarity=0.247  Sum_probs=99.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+++.++ .+....... ...+++..++.++.|++.||+|||+.   +++|+||||+||+++.++.++++|||+++....
T Consensus        85 ~e~~~~~-~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056          85 MELAPLG-ELRSYLQVN-KYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             EEcCCCC-cHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeeccc
Confidence            3444444 444444332 33579999999999999999999998   999999999999999999999999999876543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..........++..|+|||.+....++.++|+||||+++|++++ |..||...
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  212 (270)
T cd05056         160 ESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGV  212 (270)
T ss_pred             ccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCC
Confidence            32211112223467999999988888999999999999999886 99999654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.89  E-value=9.6e-23  Score=166.12  Aligned_cols=110  Identities=23%  Similarity=0.296  Sum_probs=91.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++........ ......++..|+||
T Consensus        98 ~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~~P  173 (301)
T cd07873          98 GNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK-TYSNEVVTLWYRPP  173 (301)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC-cccccceeecccCc
Confidence            34578888999999999999999998   999999999999999999999999999875432221 11223367889999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       174 E~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~  208 (301)
T cd07873         174 DILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGS  208 (301)
T ss_pred             HHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            98865 34788999999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.89  E-value=1.1e-22  Score=163.78  Aligned_cols=110  Identities=24%  Similarity=0.288  Sum_probs=93.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-eeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||+|||+.   +++||||||+||+++.++.+|++|||+++.......... ....++..|+||
T Consensus       112 ~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~ap  188 (280)
T cd05043         112 QALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMAL  188 (280)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCH
Confidence            5688999999999999999999998   999999999999999999999999999976543322111 112356679999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++||||||+++|++++ |+.||...
T Consensus       189 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  223 (280)
T cd05043         189 ESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI  223 (280)
T ss_pred             HHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC
Confidence            99988889999999999999999999 99998644

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.89  E-value=4e-23  Score=164.18  Aligned_cols=120  Identities=23%  Similarity=0.340  Sum_probs=99.4

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........++....+.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||.+......... ...
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~  159 (255)
T cd08219          84 DLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY-ACT  159 (255)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeecccccc-ccc
Confidence            333444444455678899999999999999999998   9999999999999999999999999998765432221 123


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||++.+..++.++|+||||+++|+|++|+.||...
T Consensus       160 ~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  203 (255)
T cd08219         160 YVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQAN  203 (255)
T ss_pred             ccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCC
Confidence            44788899999998888999999999999999999999999643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.89  E-value=1.6e-22  Score=161.32  Aligned_cols=127  Identities=21%  Similarity=0.292  Sum_probs=100.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+............++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+......
T Consensus        80 e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  155 (260)
T cd05073          80 EFMAKG-SLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN  155 (260)
T ss_pred             EeCCCC-cHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCC
Confidence            344444 444444444456678889999999999999999998   9999999999999999999999999998765432


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........++..|+|||++....++.++|+||||+++|++++ |+.||...
T Consensus       156 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  207 (260)
T cd05073         156 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  207 (260)
T ss_pred             CcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC
Confidence            2221122234567999999988888999999999999999999 89888643

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.89  E-value=9.7e-23  Score=165.16  Aligned_cols=128  Identities=22%  Similarity=0.220  Sum_probs=99.4

Q ss_pred             ceEEeCCCCcchHHHHh--hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           14 GCEVKGKRKQFGAVVRR--RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..+|..++ ++..+...  .....+++..++.++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||++..
T Consensus       102 v~ey~~~~-sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~kl~dfg~~~~  177 (291)
T cd06639         102 VLELCNGG-SVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQ  177 (291)
T ss_pred             EEEECCCC-cHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEeecccchh
Confidence            34444444 44444332  2345688999999999999999999998   999999999999999999999999999876


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcC-----CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNT-----PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~-----~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....... .....++..|+|||.+...     .++.++|+|||||++|+|++|+.||...
T Consensus       178 ~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~  236 (291)
T cd06639         178 LTSTRLR-RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM  236 (291)
T ss_pred             ccccccc-ccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCC
Confidence            5332211 1223478889999987543     2578999999999999999999998644

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.89  E-value=1.4e-22  Score=167.21  Aligned_cols=128  Identities=10%  Similarity=0.065  Sum_probs=97.6

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++ ++.++........+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.++++||+.......
T Consensus        78 ~e~~~~~-~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~  153 (327)
T cd08227          78 TSFMAYG-SAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMIN  153 (327)
T ss_pred             EeccCCC-cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhcccc
Confidence            3444444 445555444445688999999999999999999998   999999999999999999999999986543221


Q ss_pred             CCCc------eeeeeecCCCcCchhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTR------TFTLIRGTRGYMAPEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~------~~~~~~g~~~y~aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....      ......++..|+|||++.+  ..++.++|+|||||++|+|++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         154 HGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             ccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            1110      0111235677999999875  45889999999999999999999999743

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.89  E-value=1.5e-22  Score=163.12  Aligned_cols=110  Identities=26%  Similarity=0.298  Sum_probs=92.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-eeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~g~~~y~aP  112 (208)
                      ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||.++.......... ....++..|++|
T Consensus       104 ~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~P  180 (279)
T cd05057         104 DNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMAL  180 (279)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCH
Confidence            3588999999999999999999998   999999999999999999999999999986543222111 111235679999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+....++.++|+||||+++|++++ |+.||...
T Consensus       181 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  215 (279)
T cd05057         181 ESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGI  215 (279)
T ss_pred             HHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCC
Confidence            99988888999999999999999998 99998754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.89  E-value=1.3e-22  Score=163.62  Aligned_cols=110  Identities=25%  Similarity=0.292  Sum_probs=92.4

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++++|||++........ ......++..|+||
T Consensus        97 ~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aP  172 (282)
T cd06643          97 ERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-RRDSFIGTPYWMAP  172 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEcccccccccccccc-ccccccccccccCH
Confidence            35688999999999999999999998   999999999999999999999999999865432211 12233478899999


Q ss_pred             hhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.     ...++.++|+|||||++|+|++|+.||...
T Consensus       173 E~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  211 (282)
T cd06643         173 EVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHEL  211 (282)
T ss_pred             hhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcccc
Confidence            9873     345678999999999999999999998654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.88  E-value=9.3e-23  Score=165.14  Aligned_cols=109  Identities=23%  Similarity=0.288  Sum_probs=91.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++....... ......++..|+|||
T Consensus        98 ~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE  173 (291)
T cd07844          98 GGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK-TYSNEVVTLWYRPPD  173 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCCCc-cccccccccccCCcH
Confidence            4678899999999999999999998   999999999999999999999999999865422111 111223577899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||+|+++|+|++|+.||...
T Consensus       174 ~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~  207 (291)
T cd07844         174 VLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGS  207 (291)
T ss_pred             HhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            8865 45788999999999999999999999654

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.88  E-value=1.1e-22  Score=164.10  Aligned_cols=128  Identities=20%  Similarity=0.244  Sum_probs=100.3

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|+.+ +++..+........+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++....
T Consensus        97 v~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~  172 (282)
T cd06636          97 VMEFCGA-GSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  172 (282)
T ss_pred             EEEeCCC-CcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCcchhhhh
Confidence            3344443 3444555554555678888899999999999999998   99999999999999999999999999987543


Q ss_pred             CCCCceeeeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......|+..|+|||.+.     ...++.++|+|||||++|+|++|+.||...
T Consensus       173 ~~~~-~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~  229 (282)
T cd06636         173 RTVG-RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDM  229 (282)
T ss_pred             cccc-CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcccc
Confidence            2111 112234788999999875     345788999999999999999999999643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.88  E-value=1.7e-22  Score=161.01  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=101.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++ .+...........+++..+.+++.|++.||.|||+.   +++|+||+|+||+++.++.+||+|||.+.....
T Consensus        81 ~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~  156 (261)
T cd05148          81 TELMEKG-SLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKE  156 (261)
T ss_pred             EeecccC-CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCC
Confidence            3344444 445555544556789999999999999999999998   999999999999999999999999999876533


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..... ....++..|++||......++.++|+||||+++|++++ |+.||...
T Consensus       157 ~~~~~-~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~  208 (261)
T cd05148         157 DVYLS-SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM  208 (261)
T ss_pred             ccccc-cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC
Confidence            22111 12224567999999988889999999999999999998 89998654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.88  E-value=1.3e-22  Score=162.20  Aligned_cols=125  Identities=21%  Similarity=0.265  Sum_probs=98.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ ++...... ....+++..+++++.|++.||+|||+.   +|+|+||||+||+++.++.++++|||+++.....
T Consensus        85 e~~~~~-~L~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd05033          85 EYMENG-SLDKFLRE-NDGKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDS  159 (266)
T ss_pred             EcCCCC-CHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhccccc
Confidence            333433 44444433 234788999999999999999999998   9999999999999999999999999999876421


Q ss_pred             CCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116           96 QTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus        96 ~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      ... ......++..|+|||.+.+..++.++|+||||+++|++++ |..||..
T Consensus       160 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~  211 (266)
T cd05033         160 EATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWD  211 (266)
T ss_pred             ccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCC
Confidence            111 1111224567999999988889999999999999999998 9988853

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.88  E-value=2.6e-22  Score=161.87  Aligned_cols=106  Identities=24%  Similarity=0.351  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .++......++.|++.||+|||+.   +|+|+||||+||+++.++.++|+|||++.......   .....++..|+|||+
T Consensus        91 ~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~  164 (279)
T cd06619          91 KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI---AKTYVGTNAYMAPER  164 (279)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc---ccCCCCChhhcCcee
Confidence            467778889999999999999998   99999999999999999999999999987653322   122357889999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.+..++.++|+||||+++|+|++|+.||...
T Consensus       165 ~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  196 (279)
T cd06619         165 ISGEQYGIHSDVWSLGISFMELALGRFPYPQI  196 (279)
T ss_pred             ecCCCCCCcchHHHHHHHHHHHHhCCCCchhh
Confidence            98888999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.88  E-value=1.5e-22  Score=164.07  Aligned_cols=110  Identities=23%  Similarity=0.239  Sum_probs=92.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++........ ......++..|+||
T Consensus       122 ~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~ap  198 (290)
T cd05045         122 RALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAI  198 (290)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHC---CeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCH
Confidence            3578889999999999999999998   9999999999999999999999999998765332221 11122356689999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       199 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  233 (290)
T cd05045         199 ESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  233 (290)
T ss_pred             HHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99988888999999999999999998 99888643

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.88  E-value=3.1e-22  Score=160.07  Aligned_cols=119  Identities=19%  Similarity=0.216  Sum_probs=96.4

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++..+..  ....++....+.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++........ ...
T Consensus        91 ~~L~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~-~~~  164 (267)
T cd06645          91 GSLQDIYH--VTGPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITATIA-KRK  164 (267)
T ss_pred             CcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCccc-ccc
Confidence            34444443  234688899999999999999999999   999999999999999999999999999876532211 122


Q ss_pred             eeecCCCcCchhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|+..|+|||++.   ...++.++|+||+||++|+|++|..||...
T Consensus       165 ~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~  212 (267)
T cd06645         165 SFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             cccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccc
Confidence            335889999999874   445788999999999999999999998644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.88  E-value=1.6e-22  Score=161.26  Aligned_cols=123  Identities=23%  Similarity=0.271  Sum_probs=99.0

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++...........+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...........
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~  161 (261)
T cd05068          85 YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAR  161 (261)
T ss_pred             CCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCCccccc
Confidence            34555555444456789999999999999999999998   999999999999999999999999999987642221111


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....+..|+|||++.+..++.++|+||||+++|++++ |+.||...
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  208 (261)
T cd05068         162 EGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM  208 (261)
T ss_pred             CCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            11112357999999988889999999999999999999 99888643

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.88  E-value=1.6e-22  Score=161.57  Aligned_cols=110  Identities=32%  Similarity=0.390  Sum_probs=93.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-----eeeeeecCCC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-----TFTLIRGTRG  108 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~g~~~  108 (208)
                      ..++...+..++.|++.||+|||+.   +++||||+|+||+++.++.++|+|||.++........     ......++..
T Consensus       101 ~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (267)
T cd06628         101 GAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVF  177 (267)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcC
Confidence            5678888899999999999999998   9999999999999999999999999998766422111     1112347888


Q ss_pred             cCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||.+....++.++|+||+|+++|++++|+.||...
T Consensus       178 y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         178 WMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             ccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence            99999998888899999999999999999999999743

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.88  E-value=2.3e-22  Score=163.05  Aligned_cols=107  Identities=24%  Similarity=0.271  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      .+++..++.++.|++.||+|||+.   +++||||||+||+++.++.++++|||+++......... .....++..|+|||
T Consensus       126 ~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  202 (296)
T cd05051         126 SLSFSTLLYMATQIASGMRYLESL---NFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWE  202 (296)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHc---CccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHH
Confidence            688999999999999999999998   99999999999999999999999999987653322211 12223567899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh--cCcCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC--CRRNME  144 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t--g~~p~~  144 (208)
                      ++....++.++|+||||+++|++++  +..||.
T Consensus       203 ~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~  235 (296)
T cd05051         203 SVLLGKFTTKSDVWAFGVTLWEILTLCREQPYE  235 (296)
T ss_pred             HhhcCCCCccchhhhhHHHHHHHHhcCCCCCCC
Confidence            9988889999999999999999998  566664

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.88  E-value=7e-22  Score=158.50  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=94.1

Q ss_pred             ceEEeCCCCcchHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           14 GCEVKGKRKQFGAVVRRRE-NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ..+|+.++.+...+..... ....+......++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++...
T Consensus        73 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~  149 (268)
T cd05086          73 VFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSR  149 (268)
T ss_pred             EEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEeccccccccc
Confidence            4455555555444443322 34566777789999999999999998   9999999999999999999999999987543


Q ss_pred             CCCCC-ceeeeeecCCCcCchhhhhc-------CCCCccccchhHHHHHHHHHhc-CcCCC
Q 042116           93 MPDQT-RTFTLIRGTRGYMAPEWSKN-------TPISMKANVFNYGVVLLEIVCC-RRNME  144 (208)
Q Consensus        93 ~~~~~-~~~~~~~g~~~y~aPE~~~~-------~~~~~~~Di~s~Gv~l~el~tg-~~p~~  144 (208)
                      ..... .......++..|+|||++..       ..++.++|+||||+++|+|+++ ..||.
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~  210 (268)
T cd05086         150 YKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYS  210 (268)
T ss_pred             CcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCC
Confidence            22111 11122346788999998743       2357889999999999999975 56664

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.88  E-value=1.4e-22  Score=167.81  Aligned_cols=123  Identities=24%  Similarity=0.377  Sum_probs=98.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++ ++..+...  ...++......++.+++.||.|||+..  +++||||||+||+++.++.+||+|||++......
T Consensus        83 e~~~~~-~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~  157 (333)
T cd06650          83 EHMDGG-SLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (333)
T ss_pred             ecCCCC-cHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh
Confidence            344444 44444432  345788888999999999999999741  6999999999999999999999999998654322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .   .....|+..|+|||++.+..++.++|+|||||++|++++|+.||...
T Consensus       158 ~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  205 (333)
T cd06650         158 M---ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP  205 (333)
T ss_pred             c---cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            1   12235889999999998888999999999999999999999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.88  E-value=2.2e-23  Score=177.33  Aligned_cols=125  Identities=26%  Similarity=0.338  Sum_probs=109.3

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .-||..++..++++++.+..++   ..+..+..|+.+|++|||++   .|+|||||.+|+|++.+..+||+|||++..+.
T Consensus       133 V~eya~~ge~~~yl~~~gr~~e---~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~  206 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKHGRMKE---KEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFFD  206 (596)
T ss_pred             EEEeccCchhHHHHHhcccchh---hhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceeec
Confidence            3477888889999998887776   55558899999999999999   99999999999999999999999999998875


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..  ......+|++.|+|||...+..| ++.+|+||+|+++|.+++|.-||++.
T Consensus       207 ~~--~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~  258 (596)
T KOG0586|consen  207 YG--LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ  258 (596)
T ss_pred             cc--ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc
Confidence            33  23455679999999999988777 68899999999999999999999865

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.88  E-value=1.3e-22  Score=165.36  Aligned_cols=109  Identities=26%  Similarity=0.357  Sum_probs=94.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||+|||+.   +++||||+|+||+++.++.++|+|||++......... .....++..|+|||
T Consensus       112 ~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE  187 (297)
T cd06659         112 TRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-RKSLVGTPYWMAPE  187 (297)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccccccc-ccceecCccccCHH
Confidence            5678999999999999999999998   9999999999999999999999999998654332221 22345889999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++....++.++|+||||+++|+|++|+.||...
T Consensus       188 ~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  220 (297)
T cd06659         188 VISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD  220 (297)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            998888999999999999999999999999743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.88  E-value=1.7e-22  Score=161.57  Aligned_cols=130  Identities=22%  Similarity=0.204  Sum_probs=100.4

Q ss_pred             ceEEeCCCCcchHHHHhh----hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-----cEEEE
Q 042116           14 GCEVKGKRKQFGAVVRRR----ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-----TAKIS   84 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-----~~kl~   84 (208)
                      .++|..++.+...+....    ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++     .++++
T Consensus        77 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~  153 (269)
T cd05044          77 IMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIG  153 (269)
T ss_pred             EEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEEC
Confidence            344455555555554332    223478899999999999999999998   999999999999999877     89999


Q ss_pred             ecCCceecCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           85 DFGLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        85 dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |||++......... ......++..|+|||++.++.++.++|+||||+++|+|++ |..||...
T Consensus       154 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~  217 (269)
T cd05044         154 DFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPAL  217 (269)
T ss_pred             CcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCccc
Confidence            99998765322211 1111234678999999998889999999999999999998 99998643

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.88  E-value=1.4e-22  Score=164.20  Aligned_cols=128  Identities=19%  Similarity=0.228  Sum_probs=97.6

Q ss_pred             eEEeCCCCcchHHHHhhh-------ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecC
Q 042116           15 CEVKGKRKQFGAVVRRRE-------NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFG   87 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg   87 (208)
                      ++|..++.+...+.....       ....++....+++.|++.||.|||+.   +|+||||||+||+++.++.++++|||
T Consensus        88 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~L~Dfg  164 (288)
T cd05061          88 MELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFG  164 (288)
T ss_pred             EeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEEECcCC
Confidence            445555555544433221       13446677889999999999999998   99999999999999999999999999


Q ss_pred             CceecCCCCCce-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116           88 LAKLLMPDQTRT-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      +++......... .....++..|+|||.+....++.++|+|||||++|++++ |..||..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~  224 (288)
T cd05061         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG  224 (288)
T ss_pred             ccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCC
Confidence            987543322111 111224667999999988889999999999999999998 6778754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.88  E-value=1.4e-22  Score=161.98  Aligned_cols=127  Identities=24%  Similarity=0.368  Sum_probs=99.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+..+ .+...........+++..+..++.|++.||.|||+.   +++|++|+++||+++.++.+||+|||++.....
T Consensus        80 ~e~~~~g-~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~  155 (259)
T PF07714_consen   80 MEYCPGG-SLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISE  155 (259)
T ss_dssp             EE--TTE-BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTT
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc
Confidence            3443333 455555555567889999999999999999999998   999999999999999999999999999987632


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      .... ..........|+|||.+....++.++||||||+++||+++ |+.|+..
T Consensus       156 ~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~  208 (259)
T PF07714_consen  156 KSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSD  208 (259)
T ss_dssp             SSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2221 1122335678999999988889999999999999999999 6788753

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.88  E-value=2.9e-22  Score=166.52  Aligned_cols=109  Identities=25%  Similarity=0.262  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .+++....+++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++......... ......++..|+|||
T Consensus       175 ~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  251 (343)
T cd05103         175 VLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE  251 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcH
Confidence            467888899999999999999998   9999999999999999999999999998764322211 111123456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+....++.++|+||||+++|++++ |..||...
T Consensus       252 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  285 (343)
T cd05103         252 TIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  285 (343)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence            9988889999999999999999997 88888643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.88  E-value=2e-22  Score=159.89  Aligned_cols=110  Identities=27%  Similarity=0.327  Sum_probs=95.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..++.++.|++.||.|||+.   +++|+||+|.||+++.++.++|+|||++........ ......++..|+||
T Consensus        93 ~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~~P  168 (256)
T cd06612          93 NKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA-KRNTVIGTPFWMAP  168 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCcc-ccccccCCccccCH
Confidence            35678999999999999999999998   999999999999999999999999999876543321 12223478899999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+||||+++|+|++|+.||...
T Consensus       169 E~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~  202 (256)
T cd06612         169 EVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDI  202 (256)
T ss_pred             HHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            9998888999999999999999999999998744

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.88  E-value=1.9e-22  Score=160.81  Aligned_cols=122  Identities=24%  Similarity=0.323  Sum_probs=99.5

Q ss_pred             CcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--
Q 042116           22 KQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--   98 (208)
Q Consensus        22 ~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--   98 (208)
                      ..+....... ....+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++.........  
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~  160 (267)
T cd06610          84 GSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR  160 (267)
T ss_pred             CcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccc
Confidence            3444444433 336789999999999999999999998   9999999999999999999999999998765443222  


Q ss_pred             -eeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 -TFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 -~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ......++..|++||++... .++.++|+||||+++++|++|+.||...
T Consensus       161 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  210 (267)
T cd06610         161 KVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKY  210 (267)
T ss_pred             cccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCcccc
Confidence             11233478899999998776 6889999999999999999999999754

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.88  E-value=2e-22  Score=166.69  Aligned_cols=110  Identities=25%  Similarity=0.213  Sum_probs=91.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aP  112 (208)
                      ..+.+..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++......... .....++..|+||
T Consensus       129 ~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (334)
T cd05100         129 EQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAP  205 (334)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCH
Confidence            4578889999999999999999998   99999999999999999999999999987653322111 1112234679999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+....++.++|+||||+++|+|++ |..||...
T Consensus       206 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  240 (334)
T cd05100         206 EALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  240 (334)
T ss_pred             HHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            99988889999999999999999998 88888643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=2.1e-22  Score=161.71  Aligned_cols=108  Identities=27%  Similarity=0.332  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .+++.....++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||+++....... ......++..|+|||+
T Consensus        94 ~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~y~~PE~  169 (274)
T cd06609          94 KLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS-KRNTFVGTPFWMAPEV  169 (274)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeeccccc-ccccccCCccccChhh
Confidence            789999999999999999999998   999999999999999999999999999987644322 1222347888999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.+..++.++|+||||+++|++++|+.||...
T Consensus       170 ~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~  201 (274)
T cd06609         170 IKQSGYDEKADIWSLGITAIELAKGEPPLSDL  201 (274)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence            98888999999999999999999999999644

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.88  E-value=1.9e-22  Score=160.47  Aligned_cols=116  Identities=27%  Similarity=0.325  Sum_probs=95.8

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++..++.++.|++.||+|||+.   +++||||||+||+++.++.+|++|||+++.......    .
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~----~  158 (256)
T cd05082          86 SLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD----T  158 (256)
T ss_pred             cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceeccccCC----C
Confidence            444444444445688999999999999999999998   999999999999999999999999999876432221    1


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      ..++..|+|||++....++.++|+||||+++|+|++ |+.||..
T Consensus       159 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~  202 (256)
T cd05082         159 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  202 (256)
T ss_pred             CccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            224567999999988889999999999999999998 8888863

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.88  E-value=2.1e-22  Score=161.24  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=87.7

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc-------EEEEecCCceecCCCCCceeeeee
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT-------AKISDFGLAKLLMPDQTRTFTLIR  104 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-------~kl~dfg~~~~~~~~~~~~~~~~~  104 (208)
                      ....+++..+++++.|++.||+|||+.   +|+||||||+||+++.++.       ++++|||++......     ....
T Consensus        98 ~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~-----~~~~  169 (262)
T cd05077          98 KSDVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR-----QECV  169 (262)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc-----cccc
Confidence            345688999999999999999999998   9999999999999986654       899999988654221     1234


Q ss_pred             cCCCcCchhhhh-cCCCCccccchhHHHHHHHHH-hcCcCCCC
Q 042116          105 GTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIV-CCRRNMEI  145 (208)
Q Consensus       105 g~~~y~aPE~~~-~~~~~~~~Di~s~Gv~l~el~-tg~~p~~~  145 (208)
                      ++..|+|||.+. ...++.++||||||+++|+|+ +|+.|+..
T Consensus       170 ~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  212 (262)
T cd05077         170 ERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKD  212 (262)
T ss_pred             ccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            778899999886 456889999999999999997 57777753

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.88  E-value=5.1e-22  Score=162.57  Aligned_cols=123  Identities=24%  Similarity=0.387  Sum_probs=98.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ ++......  ...++...+..++.|++.||.|||+.+  +++||||||+||+++.++.++|+|||++......
T Consensus        79 ey~~~~-~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (308)
T cd06615          79 EHMDGG-SLDQVLKK--AGRIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  153 (308)
T ss_pred             eccCCC-cHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhhC--CEEECCCChHHEEEecCCcEEEccCCCccccccc
Confidence            444444 44444332  256788999999999999999999732  8999999999999999999999999998654322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .   .....++..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       154 ~---~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~  201 (308)
T cd06615         154 M---ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPP  201 (308)
T ss_pred             c---cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCc
Confidence            1   12235788999999998888899999999999999999999998644

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.88  E-value=2.5e-22  Score=160.66  Aligned_cols=127  Identities=23%  Similarity=0.301  Sum_probs=99.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++ ++...... ....+++..+..++.|++.|++|||+.   +++||||||+||+++.++.++++|||++.....
T Consensus        85 ~e~~~~~-~L~~~~~~-~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  159 (268)
T cd05063          85 TEYMENG-ALDKYLRD-HDGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLED  159 (268)
T ss_pred             EEcCCCC-CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceeccc
Confidence            3444433 44444432 335688999999999999999999998   999999999999999999999999999876543


Q ss_pred             CCCceeee--eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTL--IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~--~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ........  ...+..|+|||++.+..++.++|+||||+++|++++ |+.||...
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~  214 (268)
T cd05063         160 DPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM  214 (268)
T ss_pred             ccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            22211111  112456999999988888999999999999999997 99998643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.88  E-value=2.2e-22  Score=163.25  Aligned_cols=110  Identities=25%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||.+........ ......++..|+||
T Consensus       104 ~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aP  179 (292)
T cd06644         104 DRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ-RRDSFIGTPYWMAP  179 (292)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceecccccc-ccceecCCccccCc
Confidence            35688999999999999999999998   999999999999999999999999998865432211 12234478899999


Q ss_pred             hhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.     ...++.++|+|||||++|+|++|+.||...
T Consensus       180 E~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  218 (292)
T cd06644         180 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  218 (292)
T ss_pred             eeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccc
Confidence            9874     345678999999999999999999998654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.88  E-value=9e-22  Score=158.59  Aligned_cols=118  Identities=23%  Similarity=0.281  Sum_probs=98.4

Q ss_pred             chHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeee
Q 042116           24 FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI  103 (208)
Q Consensus        24 ~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~  103 (208)
                      +.....+.....+++..++.++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||.+........  ....
T Consensus        92 l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~  166 (287)
T cd07838          92 LATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA--LTSV  166 (287)
T ss_pred             HHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcceeccCCcc--cccc
Confidence            33444443444689999999999999999999998   999999999999999999999999999877643322  1222


Q ss_pred             ecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       104 ~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .++..|+|||.+.+..++.++|+||||+++|+|++|..||...
T Consensus       167 ~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~  209 (287)
T cd07838         167 VVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGT  209 (287)
T ss_pred             cccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCC
Confidence            3678899999998888999999999999999999999988754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.88  E-value=5e-23  Score=166.85  Aligned_cols=128  Identities=22%  Similarity=0.216  Sum_probs=107.0

Q ss_pred             cceEEeC-CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC--------------
Q 042116           13 RGCEVKG-KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE--------------   77 (208)
Q Consensus        13 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--------------   77 (208)
                      +.|.+.. .|.+..+.+..++....+...+..++.|++++++|||+.   +++|-||||+|||+.+              
T Consensus       165 hiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~~~~  241 (415)
T KOG0671|consen  165 HICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKKKVC  241 (415)
T ss_pred             ceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCCccc
Confidence            3444444 344666777777888899999999999999999999999   9999999999999931              


Q ss_pred             ------CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           78 ------FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        78 ------~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                            +..++++|||.|..-...    ....+.|..|.|||++.+..++.++||||+||+|+|+.||...|....
T Consensus       242 ~~r~~ks~~I~vIDFGsAtf~~e~----hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  242 FIRPLKSTAIKVIDFGSATFDHEH----HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             eeccCCCcceEEEecCCcceeccC----cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC
Confidence                  345899999999764322    245568999999999999999999999999999999999999998774

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.88  E-value=2.4e-22  Score=170.40  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=98.9

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFT  101 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~  101 (208)
                      .+..+........+++..+.+++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........ ...
T Consensus       221 ~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~  297 (400)
T cd05105         221 EVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKG  297 (400)
T ss_pred             hHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccC
Confidence            344444444556789999999999999999999998   9999999999999999999999999999765332221 111


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       298 ~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~  343 (400)
T cd05105         298 STFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             CcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCccc
Confidence            2235678999999988889999999999999999997 88988643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.88  E-value=9.5e-22  Score=158.52  Aligned_cols=110  Identities=26%  Similarity=0.333  Sum_probs=93.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++........ ......++..|+||
T Consensus        94 ~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~aP  169 (286)
T cd07847          94 PRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPGD-DYTDYVATRWYRAP  169 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCCcc-cccCcccccccCCH
Confidence            34689999999999999999999998   999999999999999999999999999987644322 11223467889999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       170 E~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~  204 (286)
T cd07847         170 ELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGK  204 (286)
T ss_pred             HHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            99865 45788999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.88  E-value=3.7e-22  Score=160.87  Aligned_cols=122  Identities=23%  Similarity=0.333  Sum_probs=97.9

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+..+.... ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||.+...........
T Consensus        82 ~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~  157 (286)
T cd07832          82 PSDLSEVLRDE-ERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLY  157 (286)
T ss_pred             CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCcc
Confidence            44444444332 26689999999999999999999998   999999999999999999999999999887644332223


Q ss_pred             eeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....++..|+|||.+.+. .++.++|+||+|+++++|++|+.+|...
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~  204 (286)
T cd07832         158 SHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE  204 (286)
T ss_pred             ccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCC
Confidence            334578899999987644 4688999999999999999998777543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.88  E-value=2.7e-22  Score=161.51  Aligned_cols=109  Identities=24%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC---cEEEEecCCceecCCCCCce-eeeeecCCCcC
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAKLLMPDQTRT-FTLIRGTRGYM  110 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~  110 (208)
                      .+++..+++++.|++.||+|||+.   +++||||||+||+++.++   .+||+|||+++......... ......+..|+
T Consensus       112 ~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  188 (277)
T cd05036         112 SLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWM  188 (277)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhC
Confidence            588999999999999999999998   999999999999998654   58999999987653221111 11112345799


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |||++.+..++.++|||||||++|+|++ |..||...
T Consensus       189 aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~  225 (277)
T cd05036         189 PPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR  225 (277)
T ss_pred             CHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999988889999999999999999997 99998643

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.88  E-value=5.8e-22  Score=174.39  Aligned_cols=102  Identities=22%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhc
Q 042116           39 NLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKN  117 (208)
Q Consensus        39 ~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~  117 (208)
                      ..+..++.|++.||.|||+.   +|+||||||+|||++. ++.+||+|||+++..............+++.|+|||.+..
T Consensus       255 ~~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~  331 (566)
T PLN03225        255 KIIQTIMRQILFALDGLHST---GIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIM  331 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhc
Confidence            34567999999999999998   9999999999999985 5789999999998654433333334568899999996532


Q ss_pred             C----------------------CCCccccchhHHHHHHHHHhcCcCC
Q 042116          118 T----------------------PISMKANVFNYGVVLLEIVCCRRNM  143 (208)
Q Consensus       118 ~----------------------~~~~~~Di~s~Gv~l~el~tg~~p~  143 (208)
                      .                      .++.++|||||||++|||+++..+.
T Consensus       332 ~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~  379 (566)
T PLN03225        332 STQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRS  379 (566)
T ss_pred             cCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCC
Confidence            2                      2334569999999999999876553

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.88  E-value=4.3e-22  Score=158.70  Aligned_cols=127  Identities=22%  Similarity=0.270  Sum_probs=99.5

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~   90 (208)
                      ++|-..+|.++.++.++..   ++..++.+++.+|+.||.|||.+   ||.||||||+|||......   +||+||.+..
T Consensus       154 VfEKm~GGplLshI~~~~~---F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgS  227 (463)
T KOG0607|consen  154 VFEKMRGGPLLSHIQKRKH---FNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICDFDLGS  227 (463)
T ss_pred             EEecccCchHHHHHHHhhh---ccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeecccccc
Confidence            4555677888888887754   45556668999999999999999   9999999999999976544   6999998775


Q ss_pred             ecCCC------CCceeeeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPD------QTRTFTLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~------~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....      .+......+|+..|||||+..     ...|+.+.|.||+||++|-|++|..||.+.
T Consensus       228 g~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~  294 (463)
T KOG0607|consen  228 GIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGH  294 (463)
T ss_pred             ccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCc
Confidence            43211      111223456889999999863     345789999999999999999999999865

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.7e-22  Score=177.35  Aligned_cols=130  Identities=21%  Similarity=0.214  Sum_probs=105.6

Q ss_pred             ceEEeCCCCcchHHHHhhhc-----------cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEE
Q 042116           14 GCEVKGKRKQFGAVVRRREN-----------KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAK   82 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k   82 (208)
                      .|||+..|++-..|..+...           ..++....+.||.|||.|+.||-++   .++||||-.+|+|+..+..+|
T Consensus       567 vFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~VK  643 (774)
T KOG1026|consen  567 VFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVVK  643 (774)
T ss_pred             EEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEEE
Confidence            46777777776666655433           2277889999999999999999999   999999999999999999999


Q ss_pred             EEecCCceecCCCCCceee-eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           83 ISDFGLAKLLMPDQTRTFT-LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        83 l~dfg~~~~~~~~~~~~~~-~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |+|||+++..=+.+..... .-.-..+||+||.+..++||++||||||||++||+++ |+.|+...
T Consensus       644 IsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~gl  709 (774)
T KOG1026|consen  644 ISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGL  709 (774)
T ss_pred             ecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccccc
Confidence            9999999865333222221 1113568999999999999999999999999999998 78888765

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.88  E-value=2e-22  Score=160.72  Aligned_cols=120  Identities=17%  Similarity=0.256  Sum_probs=92.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc--------EEEEec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT--------AKISDF   86 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--------~kl~df   86 (208)
                      .+|+.++.+ ....... ...+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.        ++++||
T Consensus        78 ~e~~~~g~L-~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~  152 (258)
T cd05078          78 QEYVKFGSL-DTYLKKN-KNLINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDP  152 (258)
T ss_pred             EecCCCCcH-HHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEeccc
Confidence            444444444 3333322 23678889999999999999999998   9999999999999987654        689999


Q ss_pred             CCceecCCCCCceeeeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcC-cCCC
Q 042116           87 GLAKLLMPDQTRTFTLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCR-RNME  144 (208)
Q Consensus        87 g~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~-~p~~  144 (208)
                      |++......     ....++..|+|||++.+ ..++.++|+||||+++|++++|. .|+.
T Consensus       153 g~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~  207 (258)
T cd05078         153 GISITVLPK-----EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLS  207 (258)
T ss_pred             ccccccCCc-----hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChh
Confidence            987654321     12347888999999876 34788999999999999999995 4543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.88  E-value=7.7e-22  Score=158.69  Aligned_cols=109  Identities=25%  Similarity=0.333  Sum_probs=94.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....... .......++..|+|||
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~~PE  168 (283)
T cd05118          93 RGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPV-RPYTHYVVTRWYRAPE  168 (283)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc-ccccCccCcccccCcH
Confidence            5788999999999999999999998   99999999999999999999999999987765433 1122234778899999


Q ss_pred             hhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+. .++.++|+||+|+++|++++|+.||...
T Consensus       169 ~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~  202 (283)
T cd05118         169 LLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGK  202 (283)
T ss_pred             HHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            98776 6789999999999999999999998644

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.88  E-value=4.3e-22  Score=160.37  Aligned_cols=119  Identities=24%  Similarity=0.322  Sum_probs=98.1

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........++...+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+.......  ....
T Consensus        79 ~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~--~~~~  153 (277)
T cd05577          79 DLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK--KIKG  153 (277)
T ss_pred             cHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCC--cccc
Confidence            444444333335688999999999999999999998   99999999999999999999999999987653211  1222


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|++||++.+..++.++|+||+|+++++|++|+.||...
T Consensus       154 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  197 (277)
T cd05577         154 RAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQR  197 (277)
T ss_pred             ccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCC
Confidence            34678899999998888899999999999999999999999654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.88  E-value=1e-21  Score=159.76  Aligned_cols=108  Identities=20%  Similarity=0.232  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      .+++....+++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||+++......... .....++..|++||
T Consensus       126 ~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe  202 (296)
T cd05095         126 TISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWE  202 (296)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHH
Confidence            467788999999999999999998   99999999999999999999999999987653322111 11122356799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh--cCcCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC--CRRNMEI  145 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t--g~~p~~~  145 (208)
                      ....+.++.++|+|||||++|||++  |..||..
T Consensus       203 ~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~  236 (296)
T cd05095         203 SILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQ  236 (296)
T ss_pred             HHhcCCccchhhhhHHHHHHHHHHHhCCCCCccc
Confidence            9888889999999999999999998  6677753

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.88  E-value=3.7e-22  Score=159.81  Aligned_cols=111  Identities=30%  Similarity=0.438  Sum_probs=95.1

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....++...+++++.|++.||.|||+..  +++|+||+|+||+++.++.++|+|||.+.......  ......++..|++
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~l~~lh~~~--~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~  181 (269)
T cd08528         106 KKQRFTEERIWNIFVQMVLALRYLHKEK--RIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES--KLTSVVGTILYSC  181 (269)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhccCC--ceeecCCCHHHEEECCCCcEEEecccceeeccccc--ccccccCcccCcC
Confidence            3456888999999999999999999631  89999999999999999999999999998754332  2233457889999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+..++.++|+||||+++|++++|+.||...
T Consensus       182 Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~  216 (269)
T cd08528         182 PEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYST  216 (269)
T ss_pred             hhhhcCCCCchHHHHHHHHHHHHHHHhCCCccccc
Confidence            99998888999999999999999999999998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.88  E-value=4.6e-22  Score=160.10  Aligned_cols=125  Identities=26%  Similarity=0.291  Sum_probs=100.5

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||..++.+...+    ....+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++....
T Consensus        80 v~e~~~~~~L~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06642          80 IMEYLGGGSALDLL----KPGPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLT  152 (277)
T ss_pred             EEEccCCCcHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEcccccccccc
Confidence            34455544443332    235678889999999999999999998   99999999999999999999999999987654


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......++..|+|||++.+..++.++|+||||+++|++++|+.|+...
T Consensus       153 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  204 (277)
T cd06642         153 DTQI-KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDL  204 (277)
T ss_pred             Ccch-hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCccc
Confidence            3221 112234788899999998888899999999999999999999998643

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.88  E-value=1.9e-22  Score=160.00  Aligned_cols=126  Identities=21%  Similarity=0.223  Sum_probs=96.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ ++...... ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||.+......
T Consensus        73 e~~~~~-~L~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  147 (252)
T cd05084          73 ELVQGG-DFLTFLRT-EGPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDG  147 (252)
T ss_pred             eeccCC-cHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccc
Confidence            444444 33333322 234678999999999999999999998   9999999999999999999999999998754322


Q ss_pred             CCcee-eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTF-TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~-~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..... .....+..|+|||.+.++.++.++|+||||+++|++++ |..||...
T Consensus       148 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~  200 (252)
T cd05084         148 VYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANL  200 (252)
T ss_pred             cccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            11110 11112456999999988889999999999999999998 88888543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.88  E-value=6.7e-22  Score=158.31  Aligned_cols=106  Identities=27%  Similarity=0.363  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhh
Q 042116           37 ESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS  115 (208)
Q Consensus        37 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~  115 (208)
                      +...+..++.|++.||+|||+.   +|+||||||+||+++. ++.++|+|||.+........ ......++..|+|||++
T Consensus       106 ~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE~~  181 (268)
T cd06624         106 NEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINP-CTETFTGTLQYMAPEVI  181 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhheecccCCC-ccccCCCCccccChhhh
Confidence            7778888999999999999998   9999999999999976 67899999999876533222 12223478899999998


Q ss_pred             hcCC--CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          116 KNTP--ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       116 ~~~~--~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  ++.++|+||||+++|++++|+.||...
T Consensus       182 ~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~  214 (268)
T cd06624         182 DKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL  214 (268)
T ss_pred             ccccccCCchhhhHHHHHHHHHHHhCCCCCccc
Confidence            6543  788999999999999999999998643

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.88  E-value=3.5e-22  Score=159.73  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+|||++|+||+++.++.++|+|||++......... .....++..|+|||
T Consensus       101 ~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~y~~PE  176 (267)
T cd06646         101 GPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAK-RKSFIGTPYWMAPE  176 (267)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeecccccc-cCccccCccccCHh
Confidence            4678889999999999999999998   9999999999999999999999999999765322211 12234788999999


Q ss_pred             hhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.   ...++.++|+||||+++|+|++|+.||...
T Consensus       177 ~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         177 VAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             HcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            874   344678999999999999999999998643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.88  E-value=6.6e-22  Score=159.66  Aligned_cols=128  Identities=20%  Similarity=0.191  Sum_probs=99.1

Q ss_pred             eEEeCCCCcchHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRR-RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .+|+.++.+...+... .....++...+..++.|++.||.|||+.   +++||||||+||+++.++.++++|||+++...
T Consensus        99 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~  175 (286)
T cd06638          99 LELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGGVKLVDFGVSAQLT  175 (286)
T ss_pred             EeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCCEEEccCCceeecc
Confidence            3344444443333322 2335678888899999999999999998   99999999999999999999999999987654


Q ss_pred             CCCCceeeeeecCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......|+..|+|||++..     ..++.++|+||+||++|+|++|+.||...
T Consensus       176 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~  232 (286)
T cd06638         176 STRL-RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADL  232 (286)
T ss_pred             cCCC-ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCC
Confidence            3221 1223358899999998753     44788999999999999999999998644

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.88  E-value=1.6e-22  Score=164.80  Aligned_cols=109  Identities=23%  Similarity=0.346  Sum_probs=94.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++......... .....++..|+|||
T Consensus       110 ~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE  185 (296)
T cd06655         110 TCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK-RSTMVGTPYWMAPE  185 (296)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhccccccc-CCCcCCCccccCcc
Confidence            4588999999999999999999999   9999999999999999999999999998765433221 12234788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+|||||++|++++|+.||...
T Consensus       186 ~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~  218 (296)
T cd06655         186 VVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (296)
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.88  E-value=9.2e-22  Score=161.05  Aligned_cols=122  Identities=11%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---   98 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---   98 (208)
                      +.+..+........++......++.|++.||+|||+.   +|+||||||+||+++.++.++++||+.+.........   
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~  160 (314)
T cd08216          84 GSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRV  160 (314)
T ss_pred             CCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeeccccccccc
Confidence            4455555555556688899999999999999999999   9999999999999999999999999988755322111   


Q ss_pred             ---eeeeeecCCCcCchhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 ---TFTLIRGTRGYMAPEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ---~~~~~~g~~~y~aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                         ......++..|+|||++..  ..++.++|+||||+++|+|++|+.||...
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~  213 (314)
T cd08216         161 VHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDM  213 (314)
T ss_pred             cccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence               1122336778999999865  34788999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.87  E-value=4.7e-22  Score=160.70  Aligned_cols=125  Identities=20%  Similarity=0.276  Sum_probs=98.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++ .+.....+ ....+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++....
T Consensus        87 ~e~~~g~-~L~~~l~~-~~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          87 MEFLPSG-SLKEYLPR-NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             EEccCCC-CHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            3444444 44444432 234578999999999999999999998   999999999999999999999999999886543


Q ss_pred             CCCce--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           95 DQTRT--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        95 ~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      .....  .....++..|+|||.+.+..++.++|+||||+++|++++++.|..
T Consensus       162 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~  213 (284)
T cd05079         162 DKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSES  213 (284)
T ss_pred             CccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCc
Confidence            32211  112335677999999988888999999999999999999877643

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.87  E-value=7e-22  Score=159.15  Aligned_cols=124  Identities=26%  Similarity=0.288  Sum_probs=100.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+... ..   ...++......++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++.....
T Consensus        81 ~e~~~~~~L~~~-i~---~~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06640          81 MEYLGGGSALDL-LR---AGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             EecCCCCcHHHH-Hh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccC
Confidence            334444444433 32   24578888899999999999999998   999999999999999999999999999976543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......++..|+|||++.+..++.++|+||||+++|+|++|..||...
T Consensus       154 ~~~-~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  204 (277)
T cd06640         154 TQI-KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDM  204 (277)
T ss_pred             Ccc-ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            222 122234788899999998888899999999999999999999998644

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.87  E-value=2.8e-22  Score=166.00  Aligned_cols=113  Identities=25%  Similarity=0.381  Sum_probs=94.2

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--eeeeeecCCC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRG  108 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~g~~~  108 (208)
                      .....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||++.........  ......++..
T Consensus        98 ~~~~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (336)
T cd07849          98 IKTQHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRW  174 (336)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCC
Confidence            3445788999999999999999999999   9999999999999999999999999998765332221  1122357889


Q ss_pred             cCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||.+.+ ..++.++|+||+|+++|+|++|+.||...
T Consensus       175 y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~  213 (336)
T cd07849         175 YRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGK  213 (336)
T ss_pred             ccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999998654 46789999999999999999999999643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.87  E-value=2.6e-22  Score=181.57  Aligned_cols=130  Identities=24%  Similarity=0.261  Sum_probs=106.3

Q ss_pred             cceEEeCCCCcchHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCC
Q 042116           13 RGCEVKGKRKQFGAVVRRRE----NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL   88 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~   88 (208)
                      ...||+.+|.++.++.+.+.    ...+.....+.++.|||+|+.||+++   ++|||||..+|+|++....+||+|||+
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGl  848 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGL  848 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccch
Confidence            34677888888888776533    46788999999999999999999999   999999999999999999999999999


Q ss_pred             ceecCCCCC-ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116           89 AKLLMPDQT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus        89 ~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      |+..-.... .......-...|||||.+..+.|+.|+|||||||++||++| |..||..
T Consensus       849 ArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~  907 (1025)
T KOG1095|consen  849 ARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPS  907 (1025)
T ss_pred             hHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCC
Confidence            994322221 11111123568999999999999999999999999999999 5677753

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.87  E-value=1.3e-21  Score=158.13  Aligned_cols=126  Identities=22%  Similarity=0.313  Sum_probs=97.6

Q ss_pred             eEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .+|+.++.+ ..+.... ....+++..+..++.|++.||.|||+.+  +++|+||||+||+++.++.++|+|||.+....
T Consensus        78 ~e~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  154 (286)
T cd06622          78 MEYMDAGSL-DKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH--NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLV  154 (286)
T ss_pred             EeecCCCCH-HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC--CEeeCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            344444444 4444332 2347899999999999999999999632  89999999999999999999999999987653


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCC------CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTP------ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~------~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....   ....++..|+|||.+.+..      ++.++|+|||||++|++++|+.||...
T Consensus       155 ~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  210 (286)
T cd06622         155 ASLA---KTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPE  210 (286)
T ss_pred             CCcc---ccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCc
Confidence            2211   2234778899999885443      478999999999999999999999644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.87  E-value=7.2e-22  Score=159.01  Aligned_cols=110  Identities=24%  Similarity=0.252  Sum_probs=93.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||.+...............++..|+|||
T Consensus        95 ~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE  171 (287)
T cd07840          95 VKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPE  171 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCce
Confidence            5788999999999999999999998   9999999999999999999999999999876443322222334677899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       172 ~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~  205 (287)
T cd07840         172 LLLGATRYGPEVDMWSVGCILAELFLGKPIFQGS  205 (287)
T ss_pred             eeEccccCChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            7654 45789999999999999999999999755

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.87  E-value=3.7e-22  Score=159.53  Aligned_cols=109  Identities=26%  Similarity=0.307  Sum_probs=92.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC--ceeeeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~~y~a  111 (208)
                      ..++....++++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.++.......  .......++..|+|
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (265)
T cd06652         101 GALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMS  177 (265)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccC
Confidence            4578888899999999999999998   999999999999999999999999999875432111  11122347889999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ||.+.+..++.++|+||||+++|++++|+.||..
T Consensus       178 PE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  211 (265)
T cd06652         178 PEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAE  211 (265)
T ss_pred             hhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCc
Confidence            9999888889999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.87  E-value=4.7e-22  Score=161.21  Aligned_cols=109  Identities=22%  Similarity=0.238  Sum_probs=91.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +++||||+|+||+++. ++.+||+|||.++........ .....+++.|+||
T Consensus       105 ~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~~aP  180 (295)
T cd07837         105 RPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKS-YTHEIVTLWYRAP  180 (295)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeecccceecCCCccc-cCCcccccCCCCh
Confidence            4679999999999999999999998   9999999999999998 889999999998765322111 1122367889999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+||||+++|+|++|..||...
T Consensus       181 E~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~  215 (295)
T cd07837         181 EVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGD  215 (295)
T ss_pred             HHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCC
Confidence            98864 45689999999999999999999999754

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.87  E-value=3.8e-22  Score=160.23  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++++|||++...............++..|++||.
T Consensus       113 ~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  189 (275)
T cd05046         113 PLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEA  189 (275)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhh
Confidence            589999999999999999999998   99999999999999999999999999986543222111122235667999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      +....++.++|+||||+++|++++ |..||..
T Consensus       190 ~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~  221 (275)
T cd05046         190 VQEDDFSTKSDVWSFGVLMWEVFTQGELPFYG  221 (275)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            988888899999999999999999 7778753

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.87  E-value=3.3e-22  Score=162.89  Aligned_cols=109  Identities=24%  Similarity=0.352  Sum_probs=94.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++......... .....+++.|++||
T Consensus       110 ~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~-~~~~~~~~~y~aPE  185 (297)
T cd06656         110 TCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVGTPYWMAPE  185 (297)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCccC-cCcccCCccccCHH
Confidence            4578888999999999999999998   9999999999999999999999999998765433221 12234788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|++++|+.||...
T Consensus       186 ~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~  218 (297)
T cd06656         186 VVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (297)
T ss_pred             HHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999999654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.87  E-value=5.6e-22  Score=160.79  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=94.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +++|+||+|.||+++.++.+||+|||++......    .....+++.|+|||
T Consensus        96 ~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE  168 (290)
T cd05580          96 GRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR----TYTLCGTPEYLAPE  168 (290)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCCC----CCCCCCCccccChh
Confidence            5788999999999999999999998   9999999999999999999999999998775433    12234788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+...+.++|+||||+++|+|++|+.||...
T Consensus       169 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  201 (290)
T cd05580         169 IILSKGYGKAVDWWALGILIYEMLAGYPPFFDD  201 (290)
T ss_pred             hhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            998888889999999999999999999999754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.87  E-value=5.2e-22  Score=157.82  Aligned_cols=113  Identities=26%  Similarity=0.361  Sum_probs=95.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNEC--EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ...+++..++.++.|++.||.|||..+  ..+++|+||+|+||+++.++.+|++|||++......... .....++..|+
T Consensus        99 ~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~  177 (265)
T cd08217          99 RKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSF-AKTYVGTPYYM  177 (265)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCccc-ccccccCCCcc
Confidence            467889999999999999999999322  229999999999999999999999999998876443321 22335788999


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+....++.++|+||||+++++|++|+.||...
T Consensus       178 ~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  213 (265)
T cd08217         178 SPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTAR  213 (265)
T ss_pred             ChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCc
Confidence            999998888899999999999999999999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.87  E-value=4.9e-22  Score=159.28  Aligned_cols=109  Identities=19%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .++....++++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||.++........ ......++..|++||
T Consensus       109 ~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe  185 (273)
T cd05074         109 TLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALE  185 (273)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHh
Confidence            578888999999999999999998   9999999999999999999999999998765332211 111122456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+....++.++|+||||+++|++++ |+.||...
T Consensus       186 ~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~  219 (273)
T cd05074         186 SLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV  219 (273)
T ss_pred             HHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC
Confidence            9988888999999999999999999 88888643

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.87  E-value=5.9e-22  Score=160.47  Aligned_cols=118  Identities=22%  Similarity=0.327  Sum_probs=97.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      ..+......   ..++...+..++.|++.||+|||+.   +++||||+|+||+++.++.++++|||.+........ ...
T Consensus       101 ~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~-~~~  173 (285)
T cd06648         101 GALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP-RRK  173 (285)
T ss_pred             CCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCc-ccc
Confidence            344444433   4688889999999999999999998   999999999999999999999999998765432221 112


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|+..|+|||.+....++.++|+||||+++|++++|+.||...
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~  218 (285)
T cd06648         174 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE  218 (285)
T ss_pred             cccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCC
Confidence            234788999999998888999999999999999999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.87  E-value=4.9e-22  Score=157.96  Aligned_cols=120  Identities=26%  Similarity=0.377  Sum_probs=98.4

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC----
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT----   97 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~----   97 (208)
                      +.+..+..+.  ..+++..++.++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++........    
T Consensus        78 ~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          78 GDLASLLENV--GSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            3555554432  3789999999999999999999998   999999999999999999999999999875433211    


Q ss_pred             ---ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 ---RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ---~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                         .......++..|++||.......+.++|+||||+++|++++|..||...
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  204 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGE  204 (265)
T ss_pred             cccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence               0122334778899999998888899999999999999999999998644

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.87  E-value=1e-21  Score=155.70  Aligned_cols=121  Identities=28%  Similarity=0.312  Sum_probs=97.6

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+...........+++.....++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||.+............
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  162 (258)
T smart00219       86 GDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKK  162 (258)
T ss_pred             CCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceecccccccccc
Confidence            4444444443333389999999999999999999999   9999999999999999999999999999776443222111


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      ...++..|+|||......++.++|+||+|+++++|++ |+.||..
T Consensus       163 ~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~  207 (258)
T smart00219      163 GGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG  207 (258)
T ss_pred             cCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            1225678999999988888999999999999999998 7777753

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.87  E-value=7e-22  Score=159.48  Aligned_cols=125  Identities=23%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+...+..  ....+++..++.++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++....
T Consensus        86 ~e~~~~~~L~~~l~~--~~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  160 (284)
T cd05081          86 MEYLPYGSLRDYLQK--HRERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             EEecCCCCHHHHHHh--cCcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence            334444444433322  234588999999999999999999998   999999999999999999999999999987643


Q ss_pred             CCCcee--eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           95 DQTRTF--TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        95 ~~~~~~--~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ......  ....++..|+|||++.+..++.++|+||||+++|||++|..++.
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~  212 (284)
T cd05081         161 DKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSC  212 (284)
T ss_pred             CCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCC
Confidence            322111  11113445899999988889999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.87  E-value=9.4e-22  Score=156.88  Aligned_cols=118  Identities=26%  Similarity=0.428  Sum_probs=98.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ..+..+..... ..++......++.|++.||+|||+ .   +++|+||+|+||+++.++.++|+|||.+.......... 
T Consensus        84 ~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~-  158 (265)
T cd06605          84 GSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT-  158 (265)
T ss_pred             CcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhc-
Confidence            34555554332 677888889999999999999999 7   99999999999999999999999999986553221111 


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        ..++..|+|||++.+..++.++|+||||+++|++++|+.||...
T Consensus       159 --~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         159 --FVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             --ccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence              44788999999998888999999999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.87  E-value=1.2e-21  Score=158.58  Aligned_cols=127  Identities=23%  Similarity=0.256  Sum_probs=100.9

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .++|..++.+...+..   ...+++.....++.|++.||.|||+.   +++|+||+|.||+++.++.++++|||+++...
T Consensus        83 v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          83 ILDYVNGGELFTHLYQ---REHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             EEecCCCCcHHHHHhh---cCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            3455555555444432   24578888899999999999999998   99999999999999999999999999987654


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCC--CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTP--ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~--~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...........++..|++||.+.+..  .+.++|+||||+++|+|++|..||...
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  211 (288)
T cd05583         157 AEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVD  211 (288)
T ss_pred             cccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccC
Confidence            33222222344788999999987654  678999999999999999999999644

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=4.1e-22  Score=158.55  Aligned_cols=121  Identities=22%  Similarity=0.213  Sum_probs=98.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      +..+..+... ....++...+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||.+........ ..
T Consensus        84 ~~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~  158 (262)
T cd06613          84 GGSLQDIYQV-TRGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA-KR  158 (262)
T ss_pred             CCcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhhhh-cc
Confidence            3444444433 235688899999999999999999998   999999999999999999999999999876533221 11


Q ss_pred             eeeecCCCcCchhhhhcC---CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNT---PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~---~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....++..|+|||.+...   .++.++|+||||+++|+|++|+.||...
T Consensus       159 ~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~  207 (262)
T cd06613         159 KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDL  207 (262)
T ss_pred             ccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            223478889999998766   7889999999999999999999999754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=5.5e-22  Score=158.62  Aligned_cols=119  Identities=23%  Similarity=0.305  Sum_probs=96.3

Q ss_pred             cchHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           23 QFGAVVRRRE--NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        23 ~~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      .+.++.....  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+........ ..
T Consensus        95 ~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~-~~  170 (275)
T cd06608          95 SVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLG-RR  170 (275)
T ss_pred             cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCccceecccchh-hh
Confidence            4444444333  56789999999999999999999998   999999999999999999999999999876533221 12


Q ss_pred             eeeecCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ....++..|+|||.+..     ..++.++|+||||+++|++++|+.||..
T Consensus       171 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  220 (275)
T cd06608         171 NTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCD  220 (275)
T ss_pred             cCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccc
Confidence            23347889999998753     2467889999999999999999999964

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.87  E-value=1.5e-21  Score=157.46  Aligned_cols=111  Identities=28%  Similarity=0.322  Sum_probs=95.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +++|+||+|+||+++.++.+||+|||++...............++..|+||
T Consensus        94 ~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~P  170 (288)
T cd07833          94 PGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAP  170 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCC
Confidence            34588999999999999999999998   999999999999999999999999999877644433222334578889999


Q ss_pred             hhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++... .++.++|+||||+++|+|++|+.||...
T Consensus       171 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  205 (288)
T cd07833         171 ELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD  205 (288)
T ss_pred             chhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999877 7889999999999999999999998744

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.87  E-value=7.5e-22  Score=167.45  Aligned_cols=109  Identities=23%  Similarity=0.211  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .+++...++++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++........ ......++..|+|||
T Consensus       235 ~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE  311 (401)
T cd05107         235 ALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPE  311 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChH
Confidence            456777889999999999999998   9999999999999999999999999999765322211 111223577899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+....++.++|+||||+++|||++ |..||...
T Consensus       312 ~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~  345 (401)
T cd05107         312 SIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPEL  345 (401)
T ss_pred             HhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCC
Confidence            9988889999999999999999998 88888644

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.87  E-value=5.5e-22  Score=158.01  Aligned_cols=123  Identities=25%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+...........+++..+..++.|++.|+.|||+.   +++|+||||+||+++.++.++++|||.+...........
T Consensus        85 ~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  161 (261)
T cd05034          85 KGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAR  161 (261)
T ss_pred             CCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccchhhhhh
Confidence            34444444444456789999999999999999999998   999999999999999999999999999876543211111


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....+..|+|||.+.+..++.++|+||+|+++|++++ |+.||...
T Consensus       162 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  208 (261)
T cd05034         162 EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM  208 (261)
T ss_pred             hccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            11224567999999988888999999999999999999 99998643

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.87  E-value=1e-21  Score=156.25  Aligned_cols=108  Identities=33%  Similarity=0.405  Sum_probs=94.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|+++||.|||+.   +++|+||+|+||+++.++.++|+|||.+........  .....++..|+|||
T Consensus        95 ~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~y~~PE  169 (258)
T cd05578          95 VKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL--TTSTSGTPGYMAPE  169 (258)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc--ccccCCChhhcCHH
Confidence            5788899999999999999999998   999999999999999999999999999876543321  22334788899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+....++.++|+||+|+++|++++|+.||...
T Consensus       170 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  202 (258)
T cd05578         170 VLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGH  202 (258)
T ss_pred             HHcccCCCCcccchhhHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999999755

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.87  E-value=5.3e-22  Score=158.85  Aligned_cols=110  Identities=25%  Similarity=0.284  Sum_probs=93.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC--ceeeeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~~y~a  111 (208)
                      ..+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||+++.......  .......++..|+|
T Consensus       101 ~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (266)
T cd06651         101 GALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMS  177 (266)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccC
Confidence            3578888899999999999999998   999999999999999999999999999875432111  11122347889999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||++.+..++.++|+|||||++|++++|+.||...
T Consensus       178 PE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         178 PEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             HHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence            99998888899999999999999999999998643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.87  E-value=3.6e-22  Score=157.60  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=98.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||..++.+...+...   ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++++|||.+.....
T Consensus        64 ~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~  137 (237)
T cd05576          64 LQHAEGGKLWSHISKF---LNIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED  137 (237)
T ss_pred             EecCCCCCHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhcccc
Confidence            4455555555555432   3488999999999999999999998   999999999999999999999999998755432


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      .    .....++..|+|||......++.++|+||+|+++|++++|+.|+..
T Consensus       138 ~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~  184 (237)
T cd05576         138 S----CDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVEC  184 (237)
T ss_pred             c----cccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhc
Confidence            1    1122356779999999888889999999999999999999988754

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.87  E-value=2.5e-21  Score=157.40  Aligned_cols=108  Identities=21%  Similarity=0.247  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      .+++..+++++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++.......... .....++..|+|||
T Consensus       125 ~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  201 (295)
T cd05097         125 SVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWE  201 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChh
Confidence            468888999999999999999998   99999999999999999999999999987643322111 11123466899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh--cCcCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC--CRRNMEI  145 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t--g~~p~~~  145 (208)
                      .+....++.++|+||||+++|+|++  +..||..
T Consensus       202 ~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~  235 (295)
T cd05097         202 SILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSL  235 (295)
T ss_pred             hhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcc
Confidence            9988889999999999999999998  4556653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.87  E-value=6.2e-22  Score=156.83  Aligned_cols=110  Identities=23%  Similarity=0.226  Sum_probs=90.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-eeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~g~~~y~aP  112 (208)
                      ..++....+.++.+++.||.|||+.   +++||||+|+||+++.++.++|+|||.+........... .....+..|+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~P  164 (251)
T cd05041          88 NRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAP  164 (251)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCCh
Confidence            4678888999999999999999998   999999999999999999999999999876532221111 111234569999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++|+||||+++|+|++ |..||...
T Consensus       165 E~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~  199 (251)
T cd05041         165 EALNYGRYTSESDVWSYGILLWETFSLGDTPYPGM  199 (251)
T ss_pred             HhhccCCCCcchhHHHHHHHHHHHHhccCCCCccC
Confidence            99988889999999999999999999 78887543

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.87  E-value=1.7e-21  Score=156.93  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=93.2

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      .....+++..+..++.|++.||.|||+.   +++||||+|+||+++.++.++++|||.+........ ......++..|+
T Consensus        92 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~y~  167 (284)
T cd07836          92 GVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN-TFSNEVVTLWYR  167 (284)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc-cccccccccccc
Confidence            3345689999999999999999999998   999999999999999999999999999875432211 112234678899


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +||.+.+. .++.++|+||||+++|++++|+.||...
T Consensus       168 ~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  204 (284)
T cd07836         168 APDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGT  204 (284)
T ss_pred             ChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99988653 4688999999999999999999999755

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.87  E-value=6.1e-22  Score=159.31  Aligned_cols=107  Identities=24%  Similarity=0.280  Sum_probs=90.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||.|||+.   +++||||+|+||+++. +.+||+|||+++.......  .....++..|+|||
T Consensus        95 ~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE  168 (282)
T cd07831          95 RPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPP--YTEYISTRWYRAPE  168 (282)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccCCC--cCCCCCCcccCChh
Confidence            5689999999999999999999998   9999999999999999 9999999999876533222  12234788999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.. ..++.++|+||+||++|+|++|..||...
T Consensus       169 ~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~  202 (282)
T cd07831         169 CLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGT  202 (282)
T ss_pred             HhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCC
Confidence            7644 45688999999999999999999999654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.87  E-value=7.5e-22  Score=158.07  Aligned_cols=121  Identities=23%  Similarity=0.324  Sum_probs=96.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++...... ....+++...+.++.|++.||+|||+.   +++||||||+||+++.++.++++|||.+............
T Consensus        90 ~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd05066          90 GSLDAFLRK-HDGQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYT  165 (267)
T ss_pred             CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccccccccceeee
Confidence            344444433 234678899999999999999999998   9999999999999999999999999999765433221111


Q ss_pred             e--eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 L--IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~--~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .  ..++..|++||++.+..++.++|+||||+++|++++ |..||...
T Consensus       166 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~  213 (267)
T cd05066         166 TRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEM  213 (267)
T ss_pred             cCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence            1  112457999999988889999999999999999886 99998644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.87  E-value=7.3e-22  Score=159.27  Aligned_cols=120  Identities=23%  Similarity=0.271  Sum_probs=96.7

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++........ ....
T Consensus        84 ~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~-~~~~  159 (284)
T cd07860          84 DLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR-TYTH  159 (284)
T ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCcc-cccc
Confidence            344444444456788999999999999999999998   999999999999999999999999999875532221 1222


Q ss_pred             eecCCCcCchhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||.+.+.. ++.++|+||||+++|+++||+.||...
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~  204 (284)
T cd07860         160 EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD  204 (284)
T ss_pred             ccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            33678899999876544 588899999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=8.2e-22  Score=158.42  Aligned_cols=109  Identities=26%  Similarity=0.338  Sum_probs=93.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+......... .....|+..|+|||
T Consensus        96 ~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE  171 (277)
T cd06917          96 GPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSK-RSTFVGTPYWMAPE  171 (277)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccc-cccccCCcceeCHH
Confidence            3688999999999999999999998   9999999999999999999999999999876543322 22335788999999


Q ss_pred             hhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+..+ .++.++|+||||+++|+|++|+.||...
T Consensus       172 ~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  205 (277)
T cd06917         172 VITEGKYYDTKADIWSLGITIYEMATGNPPYSDV  205 (277)
T ss_pred             HhccCCccccchhHHHHHHHHHHHHhCCCCCCCC
Confidence            88653 4688999999999999999999999654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.87  E-value=9.6e-22  Score=159.71  Aligned_cols=121  Identities=23%  Similarity=0.274  Sum_probs=96.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+..+..... ..+++..++.++.|+++||+|||+.   +++|+||+|+||+++.++.++|+|||+++....... ..
T Consensus        85 ~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~-~~  159 (298)
T cd07841          85 ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR-KM  159 (298)
T ss_pred             CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeeccCCCc-cc
Confidence            344554444322 4689999999999999999999999   999999999999999999999999999977643322 11


Q ss_pred             eeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....++..|+|||.+.+ ..++.++|+|||||++|+|++|..+|...
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~  206 (298)
T cd07841         160 THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGD  206 (298)
T ss_pred             cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCC
Confidence            22235778999998854 45688999999999999999997777644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.87  E-value=1e-21  Score=159.01  Aligned_cols=127  Identities=22%  Similarity=0.238  Sum_probs=100.4

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|..++.+...+..   ...++......++.|++.||.|||+.   +++||||+|+||+++.++.++|+|||++....
T Consensus        83 v~e~~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          83 ILDYINGGELFTHLSQ---RERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             EEecCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            3445555545444433   24577888888999999999999998   99999999999999999999999999987654


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcC--CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNT--PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~--~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...........++..|+|||.+...  .++.++|+||||+++|++++|+.||...
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  211 (290)
T cd05613         157 EDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVD  211 (290)
T ss_pred             cccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcC
Confidence            3322222234578899999998653  3678899999999999999999998643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.87  E-value=5.5e-22  Score=160.36  Aligned_cols=125  Identities=22%  Similarity=0.299  Sum_probs=100.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+..+..... ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++......
T Consensus        95 e~~~~~-~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  169 (286)
T cd06614          95 EYMDGG-SLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKE  169 (286)
T ss_pred             eccCCC-cHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhccc
Confidence            334433 4555444322 4789999999999999999999998   9999999999999999999999999987654332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......++..|++||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       170 ~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~  219 (286)
T cd06614         170 KS-KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE  219 (286)
T ss_pred             hh-hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence            21 112233678899999998888899999999999999999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.87  E-value=1.4e-21  Score=161.64  Aligned_cols=110  Identities=25%  Similarity=0.344  Sum_probs=93.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---eeeeeecCCCcC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTLIRGTRGYM  110 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~g~~~y~  110 (208)
                      ..++...+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++.........   ......++..|+
T Consensus       102 ~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~  178 (334)
T cd07855         102 QPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYR  178 (334)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCccccccccccccc
Confidence            4589999999999999999999998   9999999999999999999999999998765332211   112335788999


Q ss_pred             chhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.. ..++.++|+||||+++|+|++|+.||...
T Consensus       179 ~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~  215 (334)
T cd07855         179 APELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGK  215 (334)
T ss_pred             ChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCC
Confidence            9998765 45789999999999999999999999654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=9.8e-23  Score=175.86  Aligned_cols=126  Identities=25%  Similarity=0.290  Sum_probs=99.5

Q ss_pred             CCCcchHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCC
Q 042116           20 KRKQFGAVVRRREN-KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        20 ~~~~~~~l~~~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      .|+++..+.+..=. -.-...+.-.+..||++||.|||..   .|+|||||-.|||+. -.|.+||+|||-++.+..- .
T Consensus       655 PGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgi-n  730 (1226)
T KOG4279|consen  655 PGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGI-N  730 (1226)
T ss_pred             CCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccC-C
Confidence            35566666654322 2225666667899999999999999   999999999999996 4788999999999876332 2


Q ss_pred             ceeeeeecCCCcCchhhhhcC--CCCccccchhHHHHHHHHHhcCcCCCCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNT--PISMKANVFNYGVVLLEIVCCRRNMEIDPSK  149 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~--~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~  149 (208)
                      .....+.||..|||||++..+  .|+.++|||||||++.||.||++||....+.
T Consensus       731 P~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgsp  784 (1226)
T KOG4279|consen  731 PCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSP  784 (1226)
T ss_pred             ccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCCh
Confidence            233455699999999999765  4789999999999999999999999866444

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.87  E-value=6e-22  Score=157.37  Aligned_cols=110  Identities=25%  Similarity=0.331  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.+++.|++|||+.   +++|+||||+||+++.++.++|+|||.++..............++..|+|||
T Consensus        95 ~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe  171 (256)
T cd05112          95 GKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPE  171 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHh
Confidence            4578888999999999999999998   9999999999999999999999999998765332211111122456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|++++ |+.||...
T Consensus       172 ~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  205 (256)
T cd05112         172 VFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENR  205 (256)
T ss_pred             HhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9988889999999999999999998 89998643

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.87  E-value=9.8e-22  Score=159.24  Aligned_cols=109  Identities=20%  Similarity=0.279  Sum_probs=90.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+.+..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||+++........ .....++..|+|||
T Consensus        98 ~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~-~~~~~~~~~y~aPE  173 (291)
T cd07870          98 GGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQT-YSSEVVTLWYRPPD  173 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCCCCCC-CCCccccccccCCc
Confidence            4567788889999999999999998   9999999999999999999999999998754322111 12233688899999


Q ss_pred             hhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+. .++.++|+||||+++|++++|+.||...
T Consensus       174 ~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~  207 (291)
T cd07870         174 VLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGV  207 (291)
T ss_pred             eeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            88653 4788999999999999999999999754

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.87  E-value=1.2e-21  Score=154.34  Aligned_cols=119  Identities=25%  Similarity=0.327  Sum_probs=99.7

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      ..+..+.... ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+........  ..
T Consensus        82 ~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~  155 (253)
T cd05122          82 GSLKDLLKST-NQTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA--RN  155 (253)
T ss_pred             CcHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeecccccccccccc--cc
Confidence            3454444332 25789999999999999999999998   999999999999999999999999999877644332  22


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...++..|++||.+....++.++|+||||++++++++|+.||...
T Consensus       156 ~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         156 TMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             ceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            334788999999998888899999999999999999999998644

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.87  E-value=4.3e-22  Score=161.05  Aligned_cols=111  Identities=27%  Similarity=0.358  Sum_probs=93.2

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....++......++.+++.||+|||+.+  +++||||||+||+++.++.++|+|||+++.......  .....++..|+|
T Consensus       100 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~a  175 (288)
T cd06616         100 LKSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIA--KTRDAGCRPYMA  175 (288)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeecchhHHhccCCc--cccccCccCccC
Confidence            3467899999999999999999999732  899999999999999999999999999875433221  122247889999


Q ss_pred             hhhhhcC---CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNT---PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~---~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+...   .++.++|+||||+++|++++|+.||...
T Consensus       176 PE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  213 (288)
T cd06616         176 PERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKW  213 (288)
T ss_pred             HHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhc
Confidence            9998765   5789999999999999999999998644

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.87  E-value=1.4e-21  Score=155.90  Aligned_cols=108  Identities=31%  Similarity=0.380  Sum_probs=94.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++.......  ......++..|++||
T Consensus        88 ~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~PE  162 (262)
T cd05572          88 GLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ--KTWTFCGTPEYVAPE  162 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc--ccccccCCcCccChh
Confidence            4578888999999999999999998   99999999999999999999999999987764332  122234788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+....++.++|+||+|+++|++++|..||...
T Consensus       163 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  195 (262)
T cd05572         163 IILNKGYDFSVDYWSLGILLYELLTGRPPFGED  195 (262)
T ss_pred             HhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCC
Confidence            998888899999999999999999999999755

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=2.6e-22  Score=183.31  Aligned_cols=120  Identities=16%  Similarity=0.215  Sum_probs=90.1

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-------------------CcE
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-------------------WTA   81 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-------------------~~~   81 (208)
                      +..+...... ....++...++.++.||++||.|||+.   +|+||||||+|||++..                   +.+
T Consensus        63 ~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~  138 (793)
T PLN00181         63 DVSLRQWLDN-PDRSVDAFECFHVFRQIVEIVNAAHSQ---GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATT  138 (793)
T ss_pred             CccHHHHHhc-ccccccHHHHHHHHHHHHHHHHHHHhC---CeeeccCCchhEEEcccCcEEEeeccccCcccccccCcc
Confidence            3344444432 235689999999999999999999998   99999999999999654                   445


Q ss_pred             EEEecCCceecCCCCC---------------ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           82 KISDFGLAKLLMPDQT---------------RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        82 kl~dfg~~~~~~~~~~---------------~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      |++|||+++.......               .......||+.|+|||++.+..++.++|||||||++|||++|..|+.
T Consensus       139 ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~  216 (793)
T PLN00181        139 KSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSRE  216 (793)
T ss_pred             cccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchh
Confidence            5666666543211000               00011347888999999998899999999999999999999988865

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.87  E-value=1.9e-21  Score=158.58  Aligned_cols=111  Identities=27%  Similarity=0.324  Sum_probs=92.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc----------eeee
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR----------TFTL  102 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~----------~~~~  102 (208)
                      ...+++..+..++.|+++||.|||+.   +++|+||||+||+++.++.++|+|||+++........          ....
T Consensus       109 ~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  185 (311)
T cd07866         109 SVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTN  185 (311)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCccccccccc
Confidence            45789999999999999999999998   9999999999999999999999999998765322111          1122


Q ss_pred             eecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..+++.|+|||.+.+. .++.++|+||||+++|+|++|+.||...
T Consensus       186 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~  230 (311)
T cd07866         186 LVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGK  230 (311)
T ss_pred             ceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCC
Confidence            3467889999987653 4788999999999999999999998654

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.87  E-value=1.2e-21  Score=155.55  Aligned_cols=127  Identities=25%  Similarity=0.436  Sum_probs=103.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.+. ....+.....++...+..++.|++.||.|||+.   +++|+||+|+||+++.++.+||+|||++.....
T Consensus        78 ~e~~~~~~L~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~  153 (256)
T cd08221          78 MEYANGGTLY-DKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGS  153 (256)
T ss_pred             EEecCCCcHH-HHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEccc
Confidence            3445544444 444444456788999999999999999999998   999999999999999999999999999987643


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......++..|.|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       154 ~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~  204 (256)
T cd08221         154 EYS-MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT  204 (256)
T ss_pred             ccc-cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCC
Confidence            332 122344788999999998888889999999999999999999998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.87  E-value=1.2e-21  Score=156.00  Aligned_cols=124  Identities=26%  Similarity=0.339  Sum_probs=101.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      +|..++.+. ......  ..++......++.|++.|++|||+ .   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        79 e~~~~~~L~-~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~  152 (264)
T cd06623          79 EYMDGGSLA-DLLKKV--GKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             EecCCCcHH-HHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            444444443 333322  678899999999999999999999 8   999999999999999999999999999887644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... ....++..|+|||.+....++.++|+||||+++|++++|+.||...
T Consensus       153 ~~~~~-~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~  203 (264)
T cd06623         153 TLDQC-NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPP  203 (264)
T ss_pred             CCCcc-cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            33221 2334788899999998888899999999999999999999999755

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.87  E-value=2.2e-21  Score=156.51  Aligned_cols=109  Identities=26%  Similarity=0.330  Sum_probs=92.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++........ ......++..|+|||
T Consensus        95 ~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE  170 (286)
T cd07846          95 NGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE-VYTDYVATRWYRAPE  170 (286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc-ccCcccceeeccCcH
Confidence            4589999999999999999999998   999999999999999999999999999876543322 222334788899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       171 ~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~  204 (286)
T cd07846         171 LLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGD  204 (286)
T ss_pred             HhccccccCchHhHHHHHHHHHHHHcCCCCCCCC
Confidence            8865 34678899999999999999999988654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=5.8e-22  Score=153.58  Aligned_cols=170  Identities=16%  Similarity=0.201  Sum_probs=128.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---eeeeeecCCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTLIRGTRGY  109 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~g~~~y  109 (208)
                      ..+++..++.++..++..||.|+|..   .|+|||+|+.|+|++.++.+||+|||+++.+......   ..+..+-|.+|
T Consensus       118 ~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwY  194 (376)
T KOG0669|consen  118 KVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWY  194 (376)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeec
Confidence            35778889999999999999999999   9999999999999999999999999999876533321   12233458899


Q ss_pred             Cchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhhhhhhhhhhhhccc----------CC-CC
Q 042116          110 MAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH----------GE-EV  177 (208)
Q Consensus       110 ~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------~~-~~  177 (208)
                      .+||.+.+ ..|+++.|+|..||++.||.|+.+.+..+ +...++.++...+..+..+-|..+..          |. .-
T Consensus       195 rppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn-teqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~  273 (376)
T KOG0669|consen  195 RPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN-TEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKG  273 (376)
T ss_pred             CCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC-hHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcc
Confidence            99998765 56899999999999999999999888766 55556666655544444444433322          11 22


Q ss_pred             CHHHHHHHHH------HHHHHHhcCCCCCCCCCCC
Q 042116          178 NKKTLENMIK------SVVMMLEGITDISIPPCPT  206 (208)
Q Consensus       178 ~~~~~~~~~~------~v~~~L~~~~~~~~p~~P~  206 (208)
                      ....+++.++      +.+..|+....++|.+++.
T Consensus       274 ~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~  308 (376)
T KOG0669|consen  274 QKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRID  308 (376)
T ss_pred             hhhhhhhhcccccCChhHHHHHHHHhccCcccCcc
Confidence            3344555554      7788888888888887764

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=8.8e-22  Score=158.58  Aligned_cols=121  Identities=21%  Similarity=0.272  Sum_probs=96.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+..+... ....++...++.++.|++.||.|||+.   +|+|+||+|+||+++.++.++|+|||++......... .
T Consensus        86 ~~~L~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~  160 (280)
T cd06611          86 GGALDSIMLE-LERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK-R  160 (280)
T ss_pred             CCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhcccccc-c
Confidence            3344444433 234688999999999999999999999   9999999999999999999999999987654322221 2


Q ss_pred             eeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....++..|++||.+.     ...++.++|+||||+++|+|++|+.||...
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         161 DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC
Confidence            2334788999999874     344678999999999999999999998644

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.87  E-value=1.2e-21  Score=157.14  Aligned_cols=109  Identities=29%  Similarity=0.357  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..++...+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+......... ......++..|+||
T Consensus       103 ~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~P  179 (272)
T cd06629         103 GRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAP  179 (272)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCH
Confidence            5688888899999999999999998   9999999999999999999999999998764322111 11223478899999


Q ss_pred             hhhhcCC--CCccccchhHHHHHHHHHhcCcCCCC
Q 042116          113 EWSKNTP--ISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       113 E~~~~~~--~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      |.+....  ++.++|+||||++++++++|..||..
T Consensus       180 E~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  214 (272)
T cd06629         180 EVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSD  214 (272)
T ss_pred             HHhccccCCCCccchhHHHHHHHHHHHhCCCCCcC
Confidence            9987654  78999999999999999999999853

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.87  E-value=2.1e-21  Score=158.58  Aligned_cols=126  Identities=23%  Similarity=0.310  Sum_probs=98.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..+ +++......  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.++++|||.++....
T Consensus        80 ~e~~~g-~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~  153 (305)
T cd05609          80 MEYVEG-GDCATLLKN--IGALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLM  153 (305)
T ss_pred             EecCCC-CcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccCc
Confidence            334443 345444433  34678888899999999999999998   999999999999999999999999998864211


Q ss_pred             CCCc--------------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTR--------------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~--------------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....              ......++..|+|||.+....++.++|+||||+++|++++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~  219 (305)
T cd05609         154 SLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  219 (305)
T ss_pred             CccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            1000              001124677899999998888899999999999999999999999643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.87  E-value=2.2e-21  Score=158.63  Aligned_cols=110  Identities=23%  Similarity=0.273  Sum_probs=92.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC----CCcEEEEecCCceecCCCCC--ceeeeeecCC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE----FWTAKISDFGLAKLLMPDQT--RTFTLIRGTR  107 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~----~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~  107 (208)
                      ..++......++.|++.||.|||+.   +|+||||||+||+++.    ++.+||+|||++........  .......++.
T Consensus       103 ~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  179 (316)
T cd07842         103 VSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTI  179 (316)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccc
Confidence            3678889999999999999999998   9999999999999999    89999999999876533222  1112334788


Q ss_pred             CcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          108 GYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       108 ~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .|+|||.+.+ ..++.++|+||||+++++|++|+.||...
T Consensus       180 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  219 (316)
T cd07842         180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGR  219 (316)
T ss_pred             cccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCC
Confidence            8999998765 35788999999999999999999999765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.87  E-value=5.7e-21  Score=154.64  Aligned_cols=124  Identities=27%  Similarity=0.389  Sum_probs=99.9

Q ss_pred             EEeCCCCcchHHHHh--hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           16 EVKGKRKQFGAVVRR--RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +|..++ .+.++...  .....++......++.|++.||.|||+.   +++|+||+|.||+++.++.++|+|||++....
T Consensus        81 e~~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~  156 (287)
T cd06621          81 EYCEGG-SLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELV  156 (287)
T ss_pred             EecCCC-CHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence            444444 44443332  2335578888899999999999999998   99999999999999999999999999986543


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....   ....++..|++||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       157 ~~~~---~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         157 NSLA---GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             cccc---ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            2221   1234678899999998888999999999999999999999999755

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.87  E-value=1.3e-21  Score=163.17  Aligned_cols=106  Identities=26%  Similarity=0.256  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhh
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS  115 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~  115 (208)
                      ++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||.++.......  .....++..|+|||.+
T Consensus       115 l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~  189 (353)
T cd07850         115 LDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM--MTPYVVTRYYRAPEVI  189 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCC--CCCCcccccccCHHHH
Confidence            78888899999999999999998   999999999999999999999999999986533221  2223478889999999


Q ss_pred             hcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          116 KNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       116 ~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+..++.++|+|||||++|+|++|+.||...
T Consensus       190 ~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  220 (353)
T cd07850         190 LGMGYKENVDIWSVGCIMGEMIRGTVLFPGT  220 (353)
T ss_pred             hCCCCCCchhhHhHHHHHHHHHHCCCCCCCC
Confidence            9888999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1e-21  Score=156.97  Aligned_cols=109  Identities=25%  Similarity=0.279  Sum_probs=92.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC--ceeeeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~~y~a  111 (208)
                      ..++....++++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||+++.......  .......++..|+|
T Consensus       101 ~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (264)
T cd06653         101 GALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMS  177 (264)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccC
Confidence            3478888899999999999999998   999999999999999999999999999876432111  11122347889999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ||++.+..++.++|+||||++++++++|+.||..
T Consensus       178 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  211 (264)
T cd06653         178 PEVISGEGYGRKADVWSVACTVVEMLTEKPPWAE  211 (264)
T ss_pred             HhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCc
Confidence            9999888889999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.86  E-value=1.4e-21  Score=156.59  Aligned_cols=121  Identities=21%  Similarity=0.320  Sum_probs=95.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-e
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-F  100 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~  100 (208)
                      +++....... ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++.......... .
T Consensus        90 ~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  165 (269)
T cd05065          90 GALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTY  165 (269)
T ss_pred             CcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCccccccccCcccccc
Confidence            4455444432 34678999999999999999999998   99999999999999999999999999987653322111 1


Q ss_pred             e-eee--cCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 T-LIR--GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~-~~~--g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      . ...  .+..|+|||++....++.++|+||||+++||+++ |..||...
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~  215 (269)
T cd05065         166 TSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM  215 (269)
T ss_pred             ccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCC
Confidence            1 111  1346999999988889999999999999999886 99998643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.86  E-value=1.9e-21  Score=158.08  Aligned_cols=111  Identities=23%  Similarity=0.268  Sum_probs=93.0

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..++.++.|++.||+|||+.   +|+|+||+|+||+++.++.+||+|||.+...............++..|+||
T Consensus       110 ~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  186 (302)
T cd07864         110 LVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPP  186 (302)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccCh
Confidence            34689999999999999999999998   999999999999999999999999999876643332222222357789999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+|||||+++++++|+.||...
T Consensus       187 E~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~  221 (302)
T cd07864         187 ELLLGEERYGPAIDVWSCGCILGELFTKKPIFQAN  221 (302)
T ss_pred             HHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            98764 34688999999999999999999999744

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.86  E-value=1.5e-21  Score=155.07  Aligned_cols=126  Identities=23%  Similarity=0.295  Sum_probs=100.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++.+ ...........+++...+.++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+......
T Consensus        79 e~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~  154 (256)
T cd08218          79 DYCEGGDL-YKKINAQRGVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNST  154 (256)
T ss_pred             ecCCCCcH-HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcc
Confidence            44444443 3344333344678888999999999999999998   9999999999999999999999999998765332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... .....++..|+|||++.+..++.++|+||||++++++++|+.||...
T Consensus       155 ~~~-~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~  204 (256)
T cd08218         155 VEL-ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG  204 (256)
T ss_pred             hhh-hhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC
Confidence            211 12234788899999998888899999999999999999999998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.86  E-value=2.7e-21  Score=156.28  Aligned_cols=125  Identities=22%  Similarity=0.341  Sum_probs=99.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++ ++......  .+.+++.....++.+++.||.|||+..  +++||||+|+||+++.++.++|+|||++.....
T Consensus        82 ~e~~~~~-~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~  156 (284)
T cd06620          82 MEFMDCG-SLDRIYKK--GGPIPVEILGKIAVAVVEGLTYLYNVH--RIMHRDIKPSNILVNSRGQIKLCDFGVSGELIN  156 (284)
T ss_pred             EecCCCC-CHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHhc--CeeccCCCHHHEEECCCCcEEEccCCcccchhh
Confidence            3444444 44444433  346889999999999999999999731  899999999999999999999999998865422


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ...   ....++..|+|||++.+..++.++|+|||||++|++++|+.||....
T Consensus       157 ~~~---~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~  206 (284)
T cd06620         157 SIA---DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSN  206 (284)
T ss_pred             hcc---CccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence            211   22357889999999988888999999999999999999999998553

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.86  E-value=2.7e-21  Score=153.99  Aligned_cols=120  Identities=28%  Similarity=0.372  Sum_probs=97.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      ..+.+....  ...+++..+..++.+++.||.|||+.   +++|+||+|+||+++.++.+||+|||++............
T Consensus        84 ~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~  158 (264)
T cd06626          84 GTLEELLEH--GRILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGE  158 (264)
T ss_pred             CcHHHHHhh--cCCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccc
Confidence            344444443  23578888899999999999999998   9999999999999999999999999998776443322111


Q ss_pred             ---eeecCCCcCchhhhhcCC---CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 ---LIRGTRGYMAPEWSKNTP---ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ---~~~g~~~y~aPE~~~~~~---~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                         ...++..|++||++....   .+.++|+||||++++++++|+.||...
T Consensus       159 ~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         159 EVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             cccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence               234788999999987765   789999999999999999999999643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.86  E-value=2.7e-21  Score=154.48  Aligned_cols=120  Identities=23%  Similarity=0.325  Sum_probs=96.7

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCc--
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTR--   98 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~--   98 (208)
                      +.+..+...  ...+++.....++.|++.||.|||+.   +++|+||+|+||+++.++ .++|+|||.+.........  
T Consensus        88 ~~L~~~l~~--~~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~  162 (268)
T cd06630          88 GSVSHLLSK--YGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAG  162 (268)
T ss_pred             CcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCC
Confidence            445444432  34678888999999999999999998   999999999999998765 5899999998765432211  


Q ss_pred             -eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 -TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 -~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ......++..|+|||.+.+..++.++|+||+|++++++++|..||...
T Consensus       163 ~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  211 (268)
T cd06630         163 EFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE  211 (268)
T ss_pred             ccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence             112234788999999998888899999999999999999999998644

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.86  E-value=2.2e-21  Score=153.92  Aligned_cols=119  Identities=27%  Similarity=0.468  Sum_probs=97.9

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecCCCCCceee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      .+.+.........+++..++.++.+++.||.|||+.   +++|+||+|+||+++.+ +.++++|||.+........  ..
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~--~~  159 (256)
T cd08220          85 TLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK--AY  159 (256)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc--cc
Confidence            444555444455688999999999999999999998   99999999999999854 4579999999987643322  12


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...++..|+|||.+....++.++|+||||+++|+|++|+.||...
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  204 (256)
T cd08220         160 TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA  204 (256)
T ss_pred             ccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccC
Confidence            234788999999998888899999999999999999999998644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.86  E-value=1.5e-21  Score=155.09  Aligned_cols=123  Identities=28%  Similarity=0.314  Sum_probs=98.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++.+ ...........+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus        78 e~~~~~~L-~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~  153 (254)
T cd05083          78 ELMSKGNL-VNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG  153 (254)
T ss_pred             ECCCCCCH-HHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceecccc
Confidence            34444444 4444444445688999999999999999999998   9999999999999999999999999998764322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..    ....+..|+|||++.+..++.++|+||||+++|+|++ |+.||...
T Consensus       154 ~~----~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  201 (254)
T cd05083         154 VD----NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM  201 (254)
T ss_pred             CC----CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC
Confidence            11    1123567999999988889999999999999999998 89988644

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.86  E-value=6.2e-22  Score=157.39  Aligned_cols=118  Identities=27%  Similarity=0.305  Sum_probs=97.8

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+...........+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.++.......    
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~----  157 (256)
T cd05039          85 GSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD----  157 (256)
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccccccccc----
Confidence            3445555444445789999999999999999999998   999999999999999999999999999876532221    


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....+..|+|||++....++.++|+||||+++|++++ |+.||...
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  203 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  203 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            1224567999999988888999999999999999997 99988644

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.86  E-value=9.5e-23  Score=172.90  Aligned_cols=126  Identities=24%  Similarity=0.225  Sum_probs=103.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      -|++.+|.+.++|.+...  .++...+++++.++|+||+|||++   ++|||||-.+|+|++.++.+||+|||+++.-..
T Consensus       240 mEl~~gGsL~~~L~k~~~--~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~  314 (474)
T KOG0194|consen  240 MELCNGGSLDDYLKKNKK--SLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ  314 (474)
T ss_pred             EEecCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCccccccCCcc
Confidence            466777777676665433  799999999999999999999999   999999999999999999999999999876431


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      -... .....-...|+|||.+..+.|+.++|||||||++||+++ |..||..-
T Consensus       315 ~~~~-~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~  366 (474)
T KOG0194|consen  315 YVMK-KFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGM  366 (474)
T ss_pred             eeec-cccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCC
Confidence            1111 111124568999999999999999999999999999999 78888754

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.86  E-value=8.7e-22  Score=157.29  Aligned_cols=121  Identities=21%  Similarity=0.268  Sum_probs=97.5

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC----
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ----   96 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~----   96 (208)
                      ++.+.....+  ...+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++.......    
T Consensus        86 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  160 (265)
T cd06631          86 GGSISSILNR--FGPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGT  160 (265)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccccc
Confidence            3344444432  24578888899999999999999998   99999999999999999999999999987542211    


Q ss_pred             -CceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 -TRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 -~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ........++..|+|||++.+..++.++|+||||+++|++++|+.||...
T Consensus       161 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  211 (265)
T cd06631         161 HSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASM  211 (265)
T ss_pred             ccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccC
Confidence             11112234788999999998888899999999999999999999999643

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.86  E-value=5.3e-22  Score=157.68  Aligned_cols=111  Identities=23%  Similarity=0.280  Sum_probs=94.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC----CcEEEEecCCceecCCCCCc--eeeeeecC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF----WTAKISDFGLAKLLMPDQTR--TFTLIRGT  106 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~----~~~kl~dfg~~~~~~~~~~~--~~~~~~g~  106 (208)
                      .+.++......|+.||+.|+.|||+.   =|+||||||.|||+..+    |.+||+|||+++.+...-..  .....+-|
T Consensus       126 ~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVT  202 (438)
T KOG0666|consen  126 AKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVT  202 (438)
T ss_pred             hccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEE
Confidence            35788888899999999999999998   89999999999999877    89999999999987544332  22345578


Q ss_pred             CCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          107 RGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       107 ~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+|.|||.+.+ ..|+.+.|+||.||++.||+|-++.|...
T Consensus       203 iWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~  243 (438)
T KOG0666|consen  203 IWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGR  243 (438)
T ss_pred             EEecChHHhcccccccchhhhHHHHHHHHHHHccCccccch
Confidence            99999998875 45899999999999999999998888754

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.86  E-value=1.3e-22  Score=170.56  Aligned_cols=141  Identities=23%  Similarity=0.352  Sum_probs=112.4

Q ss_pred             cceEEeC-CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC---CcEEEEecCC
Q 042116           13 RGCEVKG-KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF---WTAKISDFGL   88 (208)
Q Consensus        13 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~dfg~   88 (208)
                      +.|.+.. -.+..-...-..+.++++.+....++.||+.||.|||-+   +|+|+||||+|||+...   -.+||||||+
T Consensus       637 rvFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGf  713 (888)
T KOG4236|consen  637 RVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGF  713 (888)
T ss_pred             eEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccc
Confidence            3444443 233444455556888999999999999999999999999   99999999999999654   3489999999


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhh
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINL  158 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~  158 (208)
                      ++.+....-+  ...+||+.|.|||++.+..|...-|+||.||++|.-++|..||..+-.-.+++....+
T Consensus       714 ARiIgEksFR--rsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaF  781 (888)
T KOG4236|consen  714 ARIIGEKSFR--RSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAF  781 (888)
T ss_pred             eeecchhhhh--hhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhhcccc
Confidence            9998554332  3456999999999999999999999999999999999999999865444445544433

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.86  E-value=2.5e-21  Score=155.82  Aligned_cols=109  Identities=28%  Similarity=0.323  Sum_probs=92.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee--eeeecCCCcCch
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF--TLIRGTRGYMAP  112 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~g~~~y~aP  112 (208)
                      .+++..++.++.|++.||+|||+.   +++|+||||+||+++.++.++++|||.+...........  ....++..|++|
T Consensus       105 ~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~P  181 (284)
T cd05038         105 QINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAP  181 (284)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCc
Confidence            589999999999999999999998   999999999999999999999999999987643222111  112245569999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |......++.++|+||||+++++|++|+.|+...
T Consensus       182 e~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~  215 (284)
T cd05038         182 ECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSP  215 (284)
T ss_pred             HHHccCCCCcccchHHHhhhhheeeccCCCcccc
Confidence            9998888999999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.86  E-value=1.4e-21  Score=157.52  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=93.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-------cEEEEecC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-------TAKISDFG   87 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-------~~kl~dfg   87 (208)
                      .+|..++. +..... .....+++..+++++.|++.||+|||+.   +|+||||||+||+++..+       .++++|||
T Consensus        95 ~ey~~~g~-L~~~l~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g  169 (274)
T cd05076          95 EEFVEHGP-LDVCLR-KEKGRVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLARLGLAEGTSPFIKLSDPG  169 (274)
T ss_pred             EecCCCCc-HHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEeccCcccCccceeeecCCc
Confidence            45555554 333332 2345788899999999999999999998   999999999999997543       37999999


Q ss_pred             CceecCCCCCceeeeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHH-HhcCcCCCCC
Q 042116           88 LAKLLMPDQTRTFTLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEI-VCCRRNMEID  146 (208)
Q Consensus        88 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el-~tg~~p~~~~  146 (208)
                      .+.......     ...++..|+|||.+.. ..++.++|+||||+++||+ ++|+.||...
T Consensus       170 ~~~~~~~~~-----~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  225 (274)
T cd05076         170 VSFTALSRE-----ERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKER  225 (274)
T ss_pred             ccccccccc-----ccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            875432211     1236778999998865 4578999999999999998 4788888644

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.8e-21  Score=155.03  Aligned_cols=120  Identities=23%  Similarity=0.305  Sum_probs=98.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|..++ .+..+...  ...++...+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||+++.....
T Consensus        77 e~~~~~-~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  150 (260)
T cd05611          77 EYLNGG-DCASLIKT--LGGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN  150 (260)
T ss_pred             eccCCC-CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceecccc
Confidence            344443 44444432  34678888999999999999999998   9999999999999999999999999998764321


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                           ....++..|++||.+.+..++.++|+||+|+++|++++|..||...
T Consensus       151 -----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  196 (260)
T cd05611         151 -----KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE  196 (260)
T ss_pred             -----ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC
Confidence                 1223788899999998877899999999999999999999999643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.86  E-value=1.7e-21  Score=158.02  Aligned_cols=119  Identities=23%  Similarity=0.257  Sum_probs=96.6

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+..+.... ...+++...+.++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||++........ ....
T Consensus        91 ~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~  165 (293)
T cd07843          91 DLKSLMETM-KQPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK-PYTQ  165 (293)
T ss_pred             CHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeeccCCcc-cccc
Confidence            344444332 23689999999999999999999998   999999999999999999999999999887643321 1222


Q ss_pred             eecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||.+.+. .++.++|+||+|+++|+|++|..||...
T Consensus       166 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         166 LVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             ccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            3467889999988654 4688999999999999999999999754

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.86  E-value=2.4e-21  Score=158.40  Aligned_cols=109  Identities=27%  Similarity=0.279  Sum_probs=92.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||.+........ ......++..|+|||
T Consensus       103 ~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE  178 (309)
T cd07845         103 TPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK-PMTPKVVTLWYRAPE  178 (309)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeecCCccC-CCCcccccccccChh
Confidence            5688999999999999999999999   999999999999999999999999999987643221 112223577899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||+|+++|+|++|+.||...
T Consensus       179 ~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~  212 (309)
T cd07845         179 LLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK  212 (309)
T ss_pred             hhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            8865 45789999999999999999999999744

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.86  E-value=2e-21  Score=161.31  Aligned_cols=138  Identities=27%  Similarity=0.282  Sum_probs=112.0

Q ss_pred             CCCccccccccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEEeCCCCCcEEEc
Q 042116            3 GKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNEC------EAPIIHCDIKPHNILMD   76 (208)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~------~~~iiHrdlk~~nill~   76 (208)
                      +......|....-+|..+|.+.++|..    .-++|....+++.-+++||+|||+..      +++|+|||||+.|||+.
T Consensus       275 r~t~~~~eywLVt~fh~kGsL~dyL~~----ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK  350 (534)
T KOG3653|consen  275 RGTADRMEYWLVTEFHPKGSLCDYLKA----NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVK  350 (534)
T ss_pred             cCCccccceeEEeeeccCCcHHHHHHh----ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEc
Confidence            334446677788888888888887765    47899999999999999999999743      56899999999999999


Q ss_pred             CCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchhhhhcCC-CC-----ccccchhHHHHHHHHHhcCcCCC
Q 042116           77 EFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTP-IS-----MKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        77 ~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~-~~-----~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      .++.+-|+|||+|..+...... .....+||.+|||||++.+.. +.     .+.||||+|.++||+++.-..+.
T Consensus       351 ~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~  425 (534)
T KOG3653|consen  351 NDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDAD  425 (534)
T ss_pred             cCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            9999999999999887655443 223367999999999997542 22     45899999999999999765543

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.86  E-value=1.4e-21  Score=161.81  Aligned_cols=110  Identities=26%  Similarity=0.336  Sum_probs=92.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc----eeeeeecCCCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR----TFTLIRGTRGY  109 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~g~~~y  109 (208)
                      ..+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||.+.........    ......++..|
T Consensus       102 ~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y  178 (337)
T cd07852         102 NILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWY  178 (337)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccc
Confidence            3778888889999999999999998   9999999999999999999999999998765433221    12234578899


Q ss_pred             Cchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +|||.+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       179 ~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~  216 (337)
T cd07852         179 RAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGT  216 (337)
T ss_pred             cCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCC
Confidence            99998754 45788999999999999999999998643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.86  E-value=5.2e-21  Score=155.88  Aligned_cols=110  Identities=21%  Similarity=0.213  Sum_probs=92.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---eeeeeecCCCcC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTLIRGTRGYM  110 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~g~~~y~  110 (208)
                      ..+++...+.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++.........   ......++..|+
T Consensus       114 ~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~  190 (310)
T cd07865         114 VKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYR  190 (310)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCcccc
Confidence            4689999999999999999999998   9999999999999999999999999998765332211   112234678899


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+. .++.++|+||||+++|+|++|+.||...
T Consensus       191 aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~  227 (310)
T cd07865         191 PPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGN  227 (310)
T ss_pred             CcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            99988654 3688999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.86  E-value=1.9e-21  Score=158.09  Aligned_cols=118  Identities=25%  Similarity=0.382  Sum_probs=94.8

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+..+.... ...+++..+..++.|++.|++|||+.+  +|+||||+|+||+++.++.++|+|||.+........  ...
T Consensus        99 ~l~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~~--~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~--~~~  173 (296)
T cd06618          99 CLDKLLKRI-QGPIPEDILGKMTVAIVKALHYLKEKH--GVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKA--KTR  173 (296)
T ss_pred             CHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhhC--CEecCCCcHHHEEEcCCCCEEECccccchhccCCCc--ccC
Confidence            445554442 347888999999999999999999731  899999999999999999999999999876532221  112


Q ss_pred             eecCCCcCchhhhhcCC----CCccccchhHHHHHHHHHhcCcCCCC
Q 042116          103 IRGTRGYMAPEWSKNTP----ISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~----~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ..++..|+|||.+....    ++.++|+||||+++|+|++|+.||..
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  220 (296)
T cd06618         174 SAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKN  220 (296)
T ss_pred             CCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence            23677899999986543    78899999999999999999999864

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.86  E-value=1.9e-21  Score=158.17  Aligned_cols=109  Identities=24%  Similarity=0.355  Sum_probs=93.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++......... .....++..|++||
T Consensus       110 ~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~~~~y~~PE  185 (293)
T cd06647         110 TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVGTPYWMAPE  185 (293)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceecccccccc-cccccCChhhcCch
Confidence            4578888999999999999999999   9999999999999999999999999988765433221 12234788899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+....++.++|+||||+++|++++|+.||...
T Consensus       186 ~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~  218 (293)
T cd06647         186 VVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (293)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.86  E-value=1.7e-21  Score=154.49  Aligned_cols=124  Identities=23%  Similarity=0.282  Sum_probs=99.6

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++ .+..+..+  ...+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.+||+|||.+.....
T Consensus        81 ~e~~~~~-~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~  154 (258)
T cd06632          81 LELVPGG-SLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             EEecCCC-cHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            3444443 34444432  34578899999999999999999998   999999999999999999999999999876543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..  ......++..|++||.+.... ++.++|+||||+++|++++|+.||...
T Consensus       155 ~~--~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~  205 (258)
T cd06632         155 FS--FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQL  205 (258)
T ss_pred             cc--cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccC
Confidence            32  122334788899999987666 889999999999999999999998644

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.3e-21  Score=167.21  Aligned_cols=112  Identities=22%  Similarity=0.275  Sum_probs=98.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      +...++......++.||+.||+|||+.   .++||||...|||+.....+|++|||+++..........+...-...|||
T Consensus       484 nk~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWma  560 (974)
T KOG4257|consen  484 NKDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMA  560 (974)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecC
Confidence            456788899999999999999999999   99999999999999999999999999999876655444443334668999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||.+..++|+.++|+|-|||++||++. |..||.+-
T Consensus       561 PESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgv  596 (974)
T KOG4257|consen  561 PESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGV  596 (974)
T ss_pred             ccccchhcccchhhHHHHHHHHHHHHHhcCCccccc
Confidence            999999999999999999999999654 89999865

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-22  Score=158.45  Aligned_cols=110  Identities=24%  Similarity=0.309  Sum_probs=96.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++.....-++.||++||.|||+.   +|+||||||.|.|++.|..+||||||+++....+.....+..+-|..|.|||
T Consensus       151 Q~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPE  227 (449)
T KOG0664|consen  151 QALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPE  227 (449)
T ss_pred             CCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHH
Confidence            4667777788899999999999999   9999999999999999999999999999987666555555556788999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ +.|+.+.||||.||++.|++..+..|...
T Consensus       228 iLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq  261 (449)
T KOG0664|consen  228 LLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA  261 (449)
T ss_pred             HhhcchhhcCccceehhhHHHHHHHhhhhhhhcc
Confidence            8875 46899999999999999999888877655

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.86  E-value=2.2e-21  Score=156.44  Aligned_cols=120  Identities=24%  Similarity=0.294  Sum_probs=96.3

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++..++.++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||.+........ ....
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~-~~~~  158 (283)
T cd07835          83 DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR-TYTH  158 (283)
T ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc-ccCc
Confidence            344444443335689999999999999999999998   999999999999999999999999999875432211 1122


Q ss_pred             eecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||++... .++.++|+||||+++|+|++|+.||...
T Consensus       159 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  203 (283)
T cd07835         159 EVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGD  203 (283)
T ss_pred             cccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            2367889999987654 4688999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.86  E-value=2.8e-21  Score=159.80  Aligned_cols=111  Identities=24%  Similarity=0.314  Sum_probs=93.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---eeeeeecCCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTLIRGTRGY  109 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~g~~~y  109 (208)
                      ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||.++........   ......|+..|
T Consensus        99 ~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y  175 (332)
T cd07857          99 GQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWY  175 (332)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccc
Confidence            45678999999999999999999998   9999999999999999999999999999765432211   11223578899


Q ss_pred             Cchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +|||.+.+ ..++.++|+||+|+++|++++|+.||...
T Consensus       176 ~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~  213 (332)
T cd07857         176 RAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK  213 (332)
T ss_pred             cCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC
Confidence            99998765 46789999999999999999999998654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2.4e-22  Score=170.83  Aligned_cols=106  Identities=27%  Similarity=0.313  Sum_probs=92.9

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ..+.+....+..|..+.+.||+|||+.   +.||||||..|||++..|.+||+|||.+....+     ...++|||.|||
T Consensus       119 hkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P-----AnsFvGTPywMA  190 (948)
T KOG0577|consen  119 HKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMAP-----ANSFVGTPYWMA  190 (948)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcCc-----hhcccCCccccc
Confidence            345677777788999999999999999   999999999999999999999999999876543     344679999999


Q ss_pred             hhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          112 PEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       112 PE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ||++.   .+.|+-++||||+|++..|+...++|+..
T Consensus       191 PEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFn  227 (948)
T KOG0577|consen  191 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  227 (948)
T ss_pred             hhHheeccccccCCccceeeccchhhhhhhcCCCccC
Confidence            99885   46799999999999999999999999753

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.86  E-value=2e-21  Score=157.19  Aligned_cols=108  Identities=23%  Similarity=0.264  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++......... .......+..|+|||
T Consensus       126 ~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  202 (288)
T cd05050         126 PLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPE  202 (288)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHH
Confidence            467888899999999999999998   9999999999999999999999999998764322211 111122456799999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      .+.+..++.++|+|||||++|+|++ |..||..
T Consensus       203 ~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~  235 (288)
T cd05050         203 SIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYG  235 (288)
T ss_pred             HHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            9988889999999999999999998 8788753

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.85  E-value=1e-22  Score=177.34  Aligned_cols=124  Identities=23%  Similarity=0.360  Sum_probs=100.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.+|.+ +..+ +.+..++++-..+.++++||.|+.||-+.   +.|||||...|||++.+..+|++|||+++.+..+
T Consensus       710 EyMENGsL-DsFL-R~~DGqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd  784 (996)
T KOG0196|consen  710 EYMENGSL-DSFL-RQNDGQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  784 (996)
T ss_pred             hhhhCCcH-HHHH-hhcCCceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecccC
Confidence            45555443 3333 33457799999999999999999999999   9999999999999999999999999999987555


Q ss_pred             CCceeeeeec--CCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCC
Q 042116           96 QTRTFTLIRG--TRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNME  144 (208)
Q Consensus        96 ~~~~~~~~~g--~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~  144 (208)
                      .....+...|  ..+|+|||.+..++++.++|+||||+++||+++ |.+|+-
T Consensus       785 ~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYW  836 (996)
T KOG0196|consen  785 PEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  836 (996)
T ss_pred             CCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccc
Confidence            4332322222  468999999999999999999999999999776 777763

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.85  E-value=6.4e-21  Score=153.57  Aligned_cols=119  Identities=24%  Similarity=0.319  Sum_probs=96.9

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+...........+++..+..++.|++.||.|||+.   +++|+||+|.||+++.++.++|+|||.+........  ...
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~  157 (283)
T cd07830          83 NLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP--YTD  157 (283)
T ss_pred             CHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCCC--cCC
Confidence            344444333345789999999999999999999998   999999999999999999999999999876543222  122


Q ss_pred             eecCCCcCchhhhh-cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~-~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||.+. ...++.++|+||||++++++++|+.||...
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~  202 (283)
T cd07830         158 YVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGS  202 (283)
T ss_pred             CCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCC
Confidence            34788899999874 345789999999999999999999998654

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.85  E-value=4.1e-21  Score=159.15  Aligned_cols=110  Identities=24%  Similarity=0.335  Sum_probs=93.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++......++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++....... ......++..|+||
T Consensus       102 ~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~~y~aP  177 (337)
T cd07858         102 SQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGD-FMTEYVVTRWYRAP  177 (337)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccccccCCCcc-cccccccccCccCh
Confidence            35688999999999999999999998   999999999999999999999999999876543221 12233478889999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.. ..++.++|+||||+++|+|++|+.||...
T Consensus       178 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  212 (337)
T cd07858         178 ELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGK  212 (337)
T ss_pred             HHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCC
Confidence            98764 45889999999999999999999999643

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.85  E-value=2.2e-22  Score=182.75  Aligned_cols=122  Identities=26%  Similarity=0.332  Sum_probs=95.7

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC--
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--   97 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~--   97 (208)
                      .++.+..+.+++..  .+......+..|++.|++|||++   ||||||+||.||+++.+|.+|+.|||.|........  
T Consensus      1317 ~~GsLa~ll~~gri--~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1317 EGGSLASLLEHGRI--EDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred             ccCcHHHHHHhcch--hhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence            34555566655432  23333446789999999999999   999999999999999999999999999987654321  


Q ss_pred             -ceeeeeecCCCcCchhhhhcCC---CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 -RTFTLIRGTRGYMAPEWSKNTP---ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 -~~~~~~~g~~~y~aPE~~~~~~---~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       .......||+.|||||++.+..   -..++||||+||+++||+||++||...
T Consensus      1392 ~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~ 1444 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAEL 1444 (1509)
T ss_pred             CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhc
Confidence             1123456999999999996543   357899999999999999999999754

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.85  E-value=3.2e-21  Score=158.98  Aligned_cols=110  Identities=26%  Similarity=0.357  Sum_probs=94.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC--ceeeeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~~y~a  111 (208)
                      ..+++..+..++.|++.||+|||+.   +++|+||||.||+++.++.++|+|||.+........  .......++..|+|
T Consensus        98 ~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  174 (330)
T cd07834          98 QPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRA  174 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCC
Confidence            3788999999999999999999999   999999999999999999999999999987644321  11223347888999


Q ss_pred             hhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+. .++.++|+||+|+++|+|++|+.||...
T Consensus       175 PE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~  210 (330)
T cd07834         175 PELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGR  210 (330)
T ss_pred             ceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCC
Confidence            9998877 7899999999999999999999999754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.85  E-value=3.2e-21  Score=156.85  Aligned_cols=109  Identities=23%  Similarity=0.317  Sum_probs=93.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++.....++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++........ ......++..|++||
T Consensus       111 ~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~~pE  186 (292)
T cd06657         111 TRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-RRKSLVGTPYWMAPE  186 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceecccccc-cccccccCccccCHH
Confidence            4578888999999999999999998   999999999999999999999999999876533221 122344788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+....++.++|+||+|+++|++++|..||...
T Consensus       187 ~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~  219 (292)
T cd06657         187 LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  219 (292)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.85  E-value=1.6e-20  Score=150.93  Aligned_cols=119  Identities=25%  Similarity=0.324  Sum_probs=97.1

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+.....+.. ..++...+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||.+........ ....
T Consensus        83 ~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~-~~~~  157 (282)
T cd07829          83 DLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR-TYTH  157 (282)
T ss_pred             CHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCcc-ccCc
Confidence            4444444322 4789999999999999999999998   999999999999999999999999999876543322 1222


Q ss_pred             eecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..++..|+|||.+... .++.++|+||||++++++++|+.||...
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  202 (282)
T cd07829         158 EVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGD  202 (282)
T ss_pred             cccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            3356789999998766 7889999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.85  E-value=3.2e-21  Score=160.13  Aligned_cols=106  Identities=26%  Similarity=0.326  Sum_probs=91.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++......    ....++..|+|||
T Consensus       112 ~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~----~~~~~~~~y~aPE  184 (342)
T cd07879         112 HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFGLARHADAEM----TGYVVTRWYRAPE  184 (342)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCC----CCceeeecccChh
Confidence            4688899999999999999999998   99999999999999999999999999987543211    1234678899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       185 ~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~  218 (342)
T cd07879         185 VILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  218 (342)
T ss_pred             hhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9865 45788999999999999999999999754

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-21  Score=161.82  Aligned_cols=129  Identities=27%  Similarity=0.328  Sum_probs=101.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCcee
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKL   91 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~   91 (208)
                      .||+.+..+=.+|-   ..+.++...+..|+.||+.||.||-+. +++|||-||||.|||+..   .|.+||.|||+++.
T Consensus       547 LEYceGNDLDFYLK---QhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKI  622 (775)
T KOG1151|consen  547 LEYCEGNDLDFYLK---QHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKI  622 (775)
T ss_pred             eeecCCCchhHHHH---hhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhh
Confidence            45665554433433   345677788889999999999999987 779999999999999954   56799999999998


Q ss_pred             cCCCCCc------eeeeeecCCCcCchhhhhcC----CCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           92 LMPDQTR------TFTLIRGTRGYMAPEWSKNT----PISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        92 ~~~~~~~------~~~~~~g~~~y~aPE~~~~~----~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      +..+...      ......||.+|++||++.-+    .++.++||||.||++|.++.|+.||..+.
T Consensus       623 MdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnq  688 (775)
T KOG1151|consen  623 MDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQ  688 (775)
T ss_pred             ccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCch
Confidence            7644332      12234589999999987543    36889999999999999999999998653

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.85  E-value=4.2e-21  Score=152.10  Aligned_cols=107  Identities=29%  Similarity=0.358  Sum_probs=94.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||+|||+.   +++|+||+|.||+++.++.+|++|||++.......   .....++..|++||
T Consensus        98 ~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~Pe  171 (256)
T cd08530          98 KLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNM---AKTQIGTPHYMAPE  171 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhccCC---cccccCCccccCHH
Confidence            5678889999999999999999998   99999999999999999999999999987764431   12234788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+||+|+++|++++|+.||...
T Consensus       172 ~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  204 (256)
T cd08530         172 VWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR  204 (256)
T ss_pred             HHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            998888899999999999999999999999644

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.85  E-value=9.9e-21  Score=154.73  Aligned_cols=106  Identities=29%  Similarity=0.318  Sum_probs=91.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++.......     ...++..|+||
T Consensus       109 ~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~-----~~~~~~~y~aP  180 (307)
T cd06607         109 KKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVSPAN-----SFVGTPYWMAP  180 (307)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecCCCC-----CccCCccccCc
Confidence            34688999999999999999999998   99999999999999999999999999987653322     23477889999


Q ss_pred             hhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.   ...++.++|+||||+++|++++|+.||...
T Consensus       181 E~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~  217 (307)
T cd06607         181 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (307)
T ss_pred             eeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence            9874   355788999999999999999999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.85  E-value=6.8e-21  Score=157.24  Aligned_cols=121  Identities=15%  Similarity=0.189  Sum_probs=93.2

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-e--
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-T--   99 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~--   99 (208)
                      .+..+..+.....++...++.++.|++.||+|||+.   +++||||||+||+++.++.++++||+.+......... .  
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (328)
T cd08226          85 SANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVV  161 (328)
T ss_pred             CHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccccc
Confidence            444455444445688898999999999999999998   9999999999999999999999999755332111110 0  


Q ss_pred             ---eeeeecCCCcCchhhhhcC--CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 ---FTLIRGTRGYMAPEWSKNT--PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ---~~~~~g~~~y~aPE~~~~~--~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                         .....++..|++||++.+.  .++.++|+|||||++|+|++|+.||...
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         162 YDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             ccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence               0111245679999998753  4688999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.85  E-value=1.1e-20  Score=154.66  Aligned_cols=106  Identities=26%  Similarity=0.322  Sum_probs=90.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.|+.|||+.   +++||||+|+||+++.++.++++|||++.......     ...++..|+||
T Consensus       109 ~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~y~aP  180 (308)
T cd06634         109 KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN-----XFVGTPYWMAP  180 (308)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeecCcc-----cccCCccccCH
Confidence            34578888999999999999999998   99999999999999999999999999987653321     23478889999


Q ss_pred             hhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.   ...++.++|+|||||++|++++|..||...
T Consensus       181 E~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         181 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             HHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence            9874   345788999999999999999999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.85  E-value=6.7e-21  Score=150.68  Aligned_cols=120  Identities=27%  Similarity=0.449  Sum_probs=99.9

Q ss_pred             cchHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           23 QFGAVVRRRE--NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        23 ~~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      .+........  ...+++.....++.+++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+........ ..
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~-~~  160 (258)
T cd08215          85 DLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVD-LA  160 (258)
T ss_pred             cHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecccCcc-ee
Confidence            4444443332  47789999999999999999999998   999999999999999999999999999877644321 12


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....+++.|+|||......++.++|+||+|++++++++|+.||...
T Consensus       161 ~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  206 (258)
T cd08215         161 KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE  206 (258)
T ss_pred             cceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC
Confidence            2335788899999998888899999999999999999999998644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=6.6e-21  Score=172.35  Aligned_cols=99  Identities=33%  Similarity=0.502  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC-----------------CCCCce
Q 042116           37 ESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM-----------------PDQTRT   99 (208)
Q Consensus        37 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~-----------------~~~~~~   99 (208)
                      .....++++++|+.||+|+|+.   |||||||||.||+++.+..+||+|||++....                 ......
T Consensus       695 ~~d~~wrLFreIlEGLaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~  771 (1351)
T KOG1035|consen  695 QRDEAWRLFREILEGLAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGD  771 (1351)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcc
Confidence            5677889999999999999999   99999999999999999999999999998621                 011112


Q ss_pred             eeeeecCCCcCchhhhhcCC---CCccccchhHHHHHHHHHh
Q 042116          100 FTLIRGTRGYMAPEWSKNTP---ISMKANVFNYGVVLLEIVC  138 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~---~~~~~Di~s~Gv~l~el~t  138 (208)
                      .+..+||.-|+|||.+.+..   |+.|+|+||+|++++||+.
T Consensus       772 ~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y  813 (1351)
T KOG1035|consen  772 LTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY  813 (1351)
T ss_pred             cccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc
Confidence            34556999999999987654   8999999999999999975

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.85  E-value=5.6e-21  Score=158.93  Aligned_cols=106  Identities=28%  Similarity=0.368  Sum_probs=91.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++.....    .....++..|+|||
T Consensus       115 ~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE  187 (345)
T cd07877         115 QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVATRWYRAPE  187 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCCEEEeccccccccccc----ccccccCCCccCHH
Confidence            4688999999999999999999998   9999999999999999999999999998764321    12234788899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       188 ~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~  221 (345)
T cd07877         188 IMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  221 (345)
T ss_pred             HHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            8865 46788999999999999999999998643

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.85  E-value=1.7e-20  Score=154.19  Aligned_cols=106  Identities=27%  Similarity=0.312  Sum_probs=91.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +++||||+|+||+++.++.++|+|||++......     ....++..|+||
T Consensus       119 ~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~y~aP  190 (317)
T cd06635         119 KKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPA-----NSFVGTPYWMAP  190 (317)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCCc-----ccccCCccccCh
Confidence            45688999999999999999999998   9999999999999999999999999988654322     123478889999


Q ss_pred             hhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.   ...++.++|+|||||++|+|++|+.||...
T Consensus       191 E~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         191 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             hhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            9874   356788999999999999999999998644

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.85  E-value=6.8e-21  Score=151.11  Aligned_cols=128  Identities=24%  Similarity=0.316  Sum_probs=101.0

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceec
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLL   92 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~   92 (208)
                      .++|..++.+.. ...+.....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++ .++++|||.+...
T Consensus        77 v~e~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~  152 (257)
T cd08225          77 VMEYCDGGDLMK-RINRQRGVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQL  152 (257)
T ss_pred             EEecCCCCcHHH-HHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhc
Confidence            344444444444 34343444678999999999999999999998   999999999999998875 4699999998765


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... ......|+..|+|||+.....++.++|+||||++++++++|..||...
T Consensus       153 ~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  205 (257)
T cd08225         153 NDSME-LAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGN  205 (257)
T ss_pred             cCCcc-cccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            43222 222334788999999998888899999999999999999999998643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.85  E-value=1e-20  Score=157.33  Aligned_cols=116  Identities=25%  Similarity=0.348  Sum_probs=96.0

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      +.++..+..   ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++++|||++.......    
T Consensus       103 ~~~l~~~~~---~~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~----  172 (343)
T cd07880         103 GTDLGKLMK---HEKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEM----  172 (343)
T ss_pred             CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccccccccCc----
Confidence            334444443   35688999999999999999999998   99999999999999999999999999987643221    


Q ss_pred             eeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....++..|++||.+.+ ..++.++|+||+|+++|++++|+.||...
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  219 (343)
T cd07880         173 TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGH  219 (343)
T ss_pred             cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            12346888999998875 35788999999999999999999999754

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=8.9e-21  Score=149.93  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=99.2

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      ..+..+....  ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+......... ..
T Consensus        84 ~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-~~  157 (254)
T cd06627          84 GSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD-DA  157 (254)
T ss_pred             CcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCccc-cc
Confidence            3444444332  6789999999999999999999998   9999999999999999999999999999876443321 12


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...++..|+|||......++.++|+||+|++++++++|+.||...
T Consensus       158 ~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~  202 (254)
T cd06627         158 SVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDL  202 (254)
T ss_pred             ccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCc
Confidence            234788999999998777889999999999999999999998644

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.84  E-value=1.3e-20  Score=156.52  Aligned_cols=111  Identities=19%  Similarity=0.318  Sum_probs=90.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCce--eeeeecCCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGY  109 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~--~~~~~g~~~y  109 (208)
                      ...+++..++.++.|++.||.|||+.   +++||||||+||+++. ++.++++|||.++.........  .....++..|
T Consensus       108 ~~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y  184 (342)
T cd07854         108 QGPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWY  184 (342)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccc
Confidence            34688999999999999999999998   9999999999999974 5578999999987653221111  1122467889


Q ss_pred             Cchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +|||.+.. ..++.++|+|||||++|+|++|+.||...
T Consensus       185 ~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~  222 (342)
T cd07854         185 RSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGA  222 (342)
T ss_pred             cCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99998654 45788999999999999999999999644

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.84  E-value=6.1e-21  Score=153.69  Aligned_cols=109  Identities=25%  Similarity=0.419  Sum_probs=91.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||+|||+.+  +++||||||+||+++.++.+||+|||++........  .....++..|+||
T Consensus        97 ~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aP  172 (283)
T cd06617          97 GLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA--KTIDAGCKPYMAP  172 (283)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecccccccccccc--cccccCCccccCh
Confidence            356889999999999999999999853  899999999999999999999999999876532211  1223478889999


Q ss_pred             hhhhc----CCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          113 EWSKN----TPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       113 E~~~~----~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      |.+.+    ..++.++|+||||+++|+|++|+.||..
T Consensus       173 E~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (283)
T cd06617         173 ERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDS  209 (283)
T ss_pred             hhcCCcccccccCccccchhhHHHHHHHHhCCCCCCc
Confidence            98854    4468899999999999999999999864

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.84  E-value=1.3e-20  Score=151.16  Aligned_cols=110  Identities=28%  Similarity=0.484  Sum_probs=94.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC----------------
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT----------------   97 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~----------------   97 (208)
                      ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++........                
T Consensus        97 ~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (280)
T cd05581          97 GSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIE  173 (280)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCcccccccc
Confidence            3789999999999999999999998   999999999999999999999999999876543221                


Q ss_pred             ---ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 ---RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ---~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                         .......++..|++||......++.++|+||+|++++++++|+.||...
T Consensus       174 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (280)
T cd05581         174 KNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGS  225 (280)
T ss_pred             ccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCc
Confidence               1112334678899999998888899999999999999999999999754

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.84  E-value=1.6e-20  Score=149.53  Aligned_cols=127  Identities=27%  Similarity=0.341  Sum_probs=99.6

Q ss_pred             ceEEeCCCCcchHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           14 GCEVKGKRKQFGAVVRR-RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      .++|..++.+...+... .....+++..++.++.|++.||.|||+.   +++|+||+|+||+++. +.++++|||++...
T Consensus        80 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          80 ITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             EEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeec
Confidence            34445554443333322 2346789999999999999999999998   9999999999999976 46999999998765


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ..... ......++..|+|||......++.++|+||||+++|++++|..||..
T Consensus       156 ~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~  207 (260)
T cd08222         156 MGSCD-LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG  207 (260)
T ss_pred             CCCcc-cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            33222 12233478889999999888888999999999999999999999853

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.84  E-value=3.5e-20  Score=146.43  Aligned_cols=121  Identities=25%  Similarity=0.288  Sum_probs=100.8

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-e
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-T   99 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~   99 (208)
                      +..+........  .+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+......... .
T Consensus        85 ~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~  159 (260)
T cd06606          85 GGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEG  159 (260)
T ss_pred             CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEeccccccccc
Confidence            445555544332  889999999999999999999998   9999999999999999999999999999876544321 1


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....++..|.+||.......+.++|+||||++++++++|+.||...
T Consensus       160 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (260)
T cd06606         160 TGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSEL  206 (260)
T ss_pred             ccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            12234788999999998888899999999999999999999999755

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-21  Score=155.19  Aligned_cols=125  Identities=26%  Similarity=0.306  Sum_probs=104.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      |||+ .++..++.+ .+++.+....+..++..-+.||+|||..   .-||||||..|||+..+|.+||+|||++..+...
T Consensus       108 EYCG-AGSiSDI~R-~R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDT  182 (502)
T KOG0574|consen  108 EYCG-AGSISDIMR-ARRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDT  182 (502)
T ss_pred             hhcC-CCcHHHHHH-HhcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhh
Confidence            4444 444555553 4667888999999999999999999998   7799999999999999999999999999766432


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... -....||+.|+|||++..-.|+.++||||+|++..||..|++|+...
T Consensus       183 MAK-RNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDI  232 (502)
T KOG0574|consen  183 MAK-RNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDI  232 (502)
T ss_pred             HHh-hCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccc
Confidence            222 23456999999999999888999999999999999999999998743

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.84  E-value=1.3e-20  Score=156.66  Aligned_cols=106  Identities=27%  Similarity=0.358  Sum_probs=91.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..+..++.|++.||+|||+.   +|+||||+|+||+++.++.++|+|||++......    .....++..|+|||
T Consensus       113 ~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~----~~~~~~~~~y~aPE  185 (343)
T cd07851         113 QKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE----MTGYVATRWYRAPE  185 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccccccccccc----ccCCcccccccCHH
Confidence            5689999999999999999999998   9999999999999999999999999998765322    12234688899999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||||+++|++++|+.||...
T Consensus       186 ~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~  219 (343)
T cd07851         186 IMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGS  219 (343)
T ss_pred             HHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            8865 35788999999999999999999999644

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.84  E-value=7.5e-22  Score=172.83  Aligned_cols=161  Identities=21%  Similarity=0.311  Sum_probs=110.7

Q ss_pred             cchHHHHhh--hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---C--CcEEEEecCCceecCCC
Q 042116           23 QFGAVVRRR--ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---F--WTAKISDFGLAKLLMPD   95 (208)
Q Consensus        23 ~~~~l~~~~--~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~--~~~kl~dfg~~~~~~~~   95 (208)
                      ++.++++..  .......-..+.+..|++.||++||+.   +|+||||||.||||+.   +  .+++|+|||+++.+..+
T Consensus       588 sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~  664 (903)
T KOG1027|consen  588 SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGG  664 (903)
T ss_pred             hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccccCCC
Confidence            455666552  111111133457899999999999997   9999999999999976   2  46899999999988665


Q ss_pred             CCc--eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhc-CcCCCCCCCCccchhhhhhh-------hhhhhh
Q 042116           96 QTR--TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCC-RRNMEIDPSKPEEIVFINLT-------YKCFID  165 (208)
Q Consensus        96 ~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg-~~p~~~~~~~~~~~~~~~~~-------~~~~~~  165 (208)
                      ...  ......||-+|.|||++....-+.++||||+||++|+.++| ..||......+..+..-+..       ..+...
T Consensus       665 ~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~~~L~~L~~~~d~eA~  744 (903)
T KOG1027|consen  665 KSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDCEAK  744 (903)
T ss_pred             cchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCccceeeeccCchHHHH
Confidence            543  23455699999999999988888899999999999998887 89997553333222211111       111222


Q ss_pred             hhhhhcccCCCCCHHHHHHHH
Q 042116          166 REFDKLVHGEEVNKKTLENMI  186 (208)
Q Consensus       166 ~~~~~~~d~~~~~~~~~~~~~  186 (208)
                      .-+.+++++.+.-++.+..++
T Consensus       745 dLI~~ml~~dP~~RPsa~~VL  765 (903)
T KOG1027|consen  745 DLISRMLNPDPQLRPSATDVL  765 (903)
T ss_pred             HHHHHhcCCCcccCCCHHHHh
Confidence            334566666655555555554

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.84  E-value=1.1e-20  Score=152.05  Aligned_cols=110  Identities=27%  Similarity=0.318  Sum_probs=94.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++.....++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++........ ......++..|++|
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~~P  170 (277)
T cd06641          95 PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI-KRNTFVGTPFWMAP  170 (277)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccchh-hhccccCCccccCh
Confidence            34688999999999999999999998   999999999999999999999999999876543221 11223478889999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+..++.++|+|||||++|++++|..||...
T Consensus       171 E~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  204 (277)
T cd06641         171 EVIKQSAYDSKADIWSLGITAIELAKGEPPHSEL  204 (277)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHcCCCCCCcc
Confidence            9998888899999999999999999999998643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.84  E-value=1.9e-20  Score=151.86  Aligned_cols=113  Identities=27%  Similarity=0.323  Sum_probs=90.6

Q ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCceeeeeecCCC
Q 042116           30 RRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTRG  108 (208)
Q Consensus        30 ~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~  108 (208)
                      .......+......++.|++.||+|||+.   +++|+||+|+||+++. ++.+|++|||++........ ......++..
T Consensus        93 ~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~  168 (294)
T PLN00009         93 SSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR-TFTHEVVTLW  168 (294)
T ss_pred             hCCCCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCCCcc-ccccCceeec
Confidence            33334467888889999999999999998   9999999999999985 55789999999875432211 1122346788


Q ss_pred             cCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.+ ..++.++|+||+|+++|+|+||+.||...
T Consensus       169 y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~  207 (294)
T PLN00009        169 YRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGD  207 (294)
T ss_pred             ccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999998865 35788999999999999999999999754

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.84  E-value=3.1e-20  Score=152.41  Aligned_cols=106  Identities=27%  Similarity=0.294  Sum_probs=90.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++......     ....++..|+||
T Consensus       115 ~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~y~aP  186 (313)
T cd06633         115 KKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA-----NSFVGTPYWMAP  186 (313)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccCCC-----CCccccccccCh
Confidence            35688999999999999999999998   9999999999999999999999999987643221     123478889999


Q ss_pred             hhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.   ...++.++|+||||+++|+|++|..||...
T Consensus       187 E~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~  223 (313)
T cd06633         187 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  223 (313)
T ss_pred             hhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9874   355788999999999999999999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=5.6e-21  Score=163.79  Aligned_cols=125  Identities=23%  Similarity=0.296  Sum_probs=98.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +||++|.. +.++-. -...++...+..++.|++.||.|||+.   .|||||||..|||+..+|.++|+|||++--....
T Consensus       109 EFC~GGAV-DaimlE-L~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t  183 (1187)
T KOG0579|consen  109 EFCGGGAV-DAIMLE-LGRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKST  183 (1187)
T ss_pred             eecCCchH-hHHHHH-hccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhH
Confidence            45555443 333322 234678888889999999999999999   9999999999999999999999999987443211


Q ss_pred             CCceeeeeecCCCcCchhhh-----hcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWS-----KNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~-----~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ...-..++||+.|||||+.     ...+|+.++||||||++|.||.-+.+|.+..
T Consensus       184 -~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel  238 (1187)
T KOG0579|consen  184 -RQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL  238 (1187)
T ss_pred             -HhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc
Confidence             1122456799999999975     4578999999999999999999999987643

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.84  E-value=2.3e-22  Score=156.68  Aligned_cols=112  Identities=28%  Similarity=0.411  Sum_probs=92.7

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ....+++++..-+|..-...||.||-..  ..|||||+||+|||++..|.+||||||.+..+..+-..  +.-.|...|+
T Consensus       159 vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAk--T~daGCrpYm  234 (361)
T KOG1006|consen  159 VQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAK--TVDAGCRPYM  234 (361)
T ss_pred             HHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHHHHHHh--hhccCCcccc
Confidence            4557888888888888889999999865  38999999999999999999999999998765433222  2234788999


Q ss_pred             chhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+..  ..|+.+||+||+|+++||+.||+.|+..-
T Consensus       235 APERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w  272 (361)
T KOG1006|consen  235 APERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKW  272 (361)
T ss_pred             ChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchH
Confidence            9998853  24789999999999999999999998754

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.84  E-value=3.8e-21  Score=152.98  Aligned_cols=108  Identities=27%  Similarity=0.272  Sum_probs=96.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      -+++..+...|+.|++.|++|||+.   +|+||||||+||++..+..+||.|||+++.....  ...+..+.+..|.|||
T Consensus       113 ~elDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~--~~mtpyVvtRyyrape  187 (369)
T KOG0665|consen  113 MELDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD--FMMTPYVVTRYYRAPE  187 (369)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhcccCcc--cccCchhheeeccCch
Confidence            4677888899999999999999999   9999999999999999999999999999865332  3455667889999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..+...+||||.||++.||++|..-|.+.
T Consensus       188 vil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~  220 (369)
T KOG0665|consen  188 VILGMGYKENVDIWSVGCIMGELILGTVLFPGK  220 (369)
T ss_pred             heeccCCcccchhhhhhhHHHHHhhceEEecCc
Confidence            998888999999999999999999999888744

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.83  E-value=2.8e-20  Score=165.14  Aligned_cols=130  Identities=22%  Similarity=0.264  Sum_probs=104.4

Q ss_pred             cceEEeCCCCcchHHHHhh-----------hc--cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC
Q 042116           13 RGCEVKGKRKQFGAVVRRR-----------EN--KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW   79 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~-----------~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~   79 (208)
                      ...||+..|.++.++.+.+           ..  ..++....+.++.|||.|++||++.   +++||||-.+|||+..+.
T Consensus       379 ~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi~~~~  455 (609)
T KOG0200|consen  379 VIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLITKNK  455 (609)
T ss_pred             EEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEecCCC
Confidence            3567788888888877766           01  1388889999999999999999999   999999999999999999


Q ss_pred             cEEEEecCCceecCCCCCceeeeeec--CCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116           80 TAKISDFGLAKLLMPDQTRTFTLIRG--TRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus        80 ~~kl~dfg~~~~~~~~~~~~~~~~~g--~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      .+||+|||+++............-.+  ...|+|||.+....|+.++||||||+++||++| |..|+..
T Consensus       456 ~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~  524 (609)
T KOG0200|consen  456 VIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPG  524 (609)
T ss_pred             EEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCC
Confidence            99999999998653333222111111  345999999999999999999999999999999 5677654

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.83  E-value=6.7e-20  Score=144.84  Aligned_cols=108  Identities=28%  Similarity=0.351  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+........ ......++..|++||.
T Consensus        89 ~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~Pe~  164 (250)
T cd05123          89 RFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS-RTNTFCGTPEYLAPEV  164 (250)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCC-cccCCcCCccccChHH
Confidence            678999999999999999999998   999999999999999999999999999877543321 1223347888999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..+...+.++|+||||+++|++++|+.||...
T Consensus       165 ~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  196 (250)
T cd05123         165 LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE  196 (250)
T ss_pred             hCCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            98888889999999999999999999999644

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.83  E-value=1.9e-20  Score=154.90  Aligned_cols=111  Identities=21%  Similarity=0.225  Sum_probs=91.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC-------------Cce
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-------------TRT   99 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~-------------~~~   99 (208)
                      ...++......++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.......             ...
T Consensus       113 ~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  189 (335)
T PTZ00024        113 KIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREE  189 (335)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEECCccceeeccccccccccccccccccccc
Confidence            34678889999999999999999998   99999999999999999999999999987654111             111


Q ss_pred             eeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....++..|+|||.+.+. .++.++|+||+|+++|+|++|..||...
T Consensus       190 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  237 (335)
T PTZ00024        190 MTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE  237 (335)
T ss_pred             ccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1122357789999988654 4688999999999999999999999755

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.2e-20  Score=159.90  Aligned_cols=127  Identities=24%  Similarity=0.281  Sum_probs=108.1

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+..|.++++|.+ -+..+++.-..+.++.||++|+.||..+   .+|||||...|+|+..+..+|++|||+++.+..+
T Consensus       343 EfM~yGNLLdYLRe-cnr~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgD  418 (1157)
T KOG4278|consen  343 EFMCYGNLLDYLRE-CNRSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGD  418 (1157)
T ss_pred             ecccCccHHHHHHH-hchhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhhcCC
Confidence            67778888877764 4567888888899999999999999998   9999999999999999999999999999998766


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........=...|.|||.+....|+.|+|+|+|||+|||+.| |..|+.+.
T Consensus       419 TYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi  470 (1157)
T KOG4278|consen  419 TYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI  470 (1157)
T ss_pred             ceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc
Confidence            5544433333567999999999999999999999999999988 66777644

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-20  Score=162.57  Aligned_cols=127  Identities=19%  Similarity=0.219  Sum_probs=102.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      |....|.+++.|.+ .....+.....-.++.|||.|+.||-++   ++|||||...|+|+.....+||+|||+.+.+...
T Consensus       190 ELaplGSLldrLrk-a~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~n  265 (1039)
T KOG0199|consen  190 ELAPLGSLLDRLRK-AKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGEN  265 (1039)
T ss_pred             hhcccchHHHHHhh-ccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCC
Confidence            34445555555555 4455677778888999999999999999   9999999999999999999999999999988655


Q ss_pred             CCceee--eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFT--LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~--~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ......  ...-.+.|.|||.++.+.|+.++|+|+|||++|||+| |..||-+.
T Consensus       266 ed~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~  319 (1039)
T KOG0199|consen  266 EDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGC  319 (1039)
T ss_pred             CcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCC
Confidence            443322  1223567999999999999999999999999999999 56888654

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.80  E-value=2.5e-19  Score=139.99  Aligned_cols=105  Identities=34%  Similarity=0.465  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhh
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS  115 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~  115 (208)
                      ++......++.+++.++.|||+.   +++|+||+|.||+++.++.++++|||.+.......  ......++..|++||..
T Consensus        84 ~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~pE~~  158 (244)
T smart00220       84 LSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG--LLTTFVGTPEYMAPEVL  158 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeecccc--ccccccCCcCCCCHHHH
Confidence            88899999999999999999998   99999999999999999999999999998764432  12233478889999999


Q ss_pred             hcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          116 KNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       116 ~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ....++.++|+||+|++++++++|..||..
T Consensus       159 ~~~~~~~~~Di~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      159 LGKGYGKAVDVWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            888889999999999999999999999865

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.80  E-value=2.2e-19  Score=152.64  Aligned_cols=127  Identities=20%  Similarity=0.206  Sum_probs=100.9

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.+|.+-..+.++... .......++|+.|||+|++||-+.   +++|||+.+.|+|++.++++||+|||.++.+-++
T Consensus       615 EYmEnGDLnqFl~aheap-t~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg  690 (807)
T KOG1094|consen  615 EYMENGDLNQFLSAHELP-TAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSG  690 (807)
T ss_pred             HHHhcCcHHHHHHhccCc-ccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccC
Confidence            566665555555554222 256666788999999999999998   9999999999999999999999999999876554


Q ss_pred             CCcee-eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh--cCcCCCCC
Q 042116           96 QTRTF-TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC--CRRNMEID  146 (208)
Q Consensus        96 ~~~~~-~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t--g~~p~~~~  146 (208)
                      ..... ...+-..+|+|+|.+..+++++++|+|+||+++||+++  ...||...
T Consensus       691 ~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~l  744 (807)
T KOG1094|consen  691 DYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQL  744 (807)
T ss_pred             CceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhh
Confidence            44332 23345678999999999999999999999999999654  66777643

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.80  E-value=6.2e-19  Score=152.62  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      ..++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++...............+++.|+|||.
T Consensus       305 ~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~  381 (507)
T PLN03224        305 KRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEE  381 (507)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhh
Confidence            456778889999999999999998   99999999999999999999999999987653322211112234789999998


Q ss_pred             hhcCC--------------------C--CccccchhHHHHHHHHHhcCc-CCC
Q 042116          115 SKNTP--------------------I--SMKANVFNYGVVLLEIVCCRR-NME  144 (208)
Q Consensus       115 ~~~~~--------------------~--~~~~Di~s~Gv~l~el~tg~~-p~~  144 (208)
                      +....                    +  ..+.|+||+||++++|+++.. |+.
T Consensus       382 l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        382 LVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             hcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence            75321                    1  134699999999999999875 654

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.80  E-value=1.5e-19  Score=149.49  Aligned_cols=107  Identities=26%  Similarity=0.393  Sum_probs=90.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++......++.|++.||+|||+.   +++||||+|.||+++.++.++|+|||.+.......    ....++..|+||
T Consensus       102 ~~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~y~aP  174 (328)
T cd07856         102 SRPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLARIQDPQM----TGYVSTRYYRAP  174 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccccccCCCc----CCCcccccccCc
Confidence            34577888888999999999999998   99999999999999999999999999987542211    123467789999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+||||+++|++++|+.||...
T Consensus       175 E~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~  209 (328)
T cd07856         175 EIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGK  209 (328)
T ss_pred             eeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            98765 56789999999999999999999999644

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=2.3e-19  Score=148.19  Aligned_cols=121  Identities=30%  Similarity=0.342  Sum_probs=96.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-----CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCc
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-----ECEAPIIHCDIKPHNILMDEFWTAKISDFGLA   89 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-----~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~   89 (208)
                      -+|...|.++++|..    ..++.+..++++.-+|.||++||.     +.+|.|.|||||+.|||+.+++.+-|+|+|+|
T Consensus       288 TdYHe~GSL~DyL~r----~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLA  363 (513)
T KOG2052|consen  288 TDYHEHGSLYDYLNR----NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  363 (513)
T ss_pred             eecccCCcHHHHHhh----ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceee
Confidence            356666667766654    688999999999999999999995     45789999999999999999999999999999


Q ss_pred             eecCCCCCc---eeeeeecCCCcCchhhhhcCC----C-C-ccccchhHHHHHHHHHhc
Q 042116           90 KLLMPDQTR---TFTLIRGTRGYMAPEWSKNTP----I-S-MKANVFNYGVVLLEIVCC  139 (208)
Q Consensus        90 ~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~----~-~-~~~Di~s~Gv~l~el~tg  139 (208)
                      .........   .....+||.+|||||++...-    | + ..+||||||.++||+...
T Consensus       364 v~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarR  422 (513)
T KOG2052|consen  364 VRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARR  422 (513)
T ss_pred             EEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            776544321   234557999999999985321    2 1 458999999999998763

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-19  Score=134.71  Aligned_cols=133  Identities=18%  Similarity=0.242  Sum_probs=103.2

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      -++.++......++.|+++||.|+|++   .++|||+||.|.++..+|..|++|||+++.+.-.. ...+..+-|.+|.+
T Consensus        94 lng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipv-rcysaevvtlwyrp  169 (292)
T KOG0662|consen   94 LNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPV-RCYSAEVVTLWYRP  169 (292)
T ss_pred             cCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCce-EeeeceeeeeeccC
Confidence            456888999999999999999999999   99999999999999999999999999998764322 23334456899999


Q ss_pred             hhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhhhhhhhhhh
Q 042116          112 PEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREF  168 (208)
Q Consensus       112 PE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (208)
                      |.++.+.. |++..|+||.||++.|+.....|......-+++...+-|.......+.|
T Consensus       170 pdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~w  227 (292)
T KOG0662|consen  170 PDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQW  227 (292)
T ss_pred             cceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccC
Confidence            99886654 7899999999999999988666655444445555444444333333444

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.6e-19  Score=141.28  Aligned_cols=126  Identities=17%  Similarity=0.299  Sum_probs=96.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc--CCCcEEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD--EFWTAKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~dfg~~~~~   92 (208)
                      +.+......+++|...-+...+-+....+++.|+++|+.|+|++   +++|||||.+|||+-  +..++||||||..+..
T Consensus        97 YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen   97 YVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             EEEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeeccccccc
Confidence            44455555666677677778888899999999999999999999   999999999999993  3446999999998653


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhc---CC--CCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKN---TP--ISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~---~~--~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      .....    ...-+..|.+||.+..   ..  ..+.+|+|.||++++.++||..||....
T Consensus       174 g~tV~----~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~  229 (378)
T KOG1345|consen  174 GTTVK----YLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKAS  229 (378)
T ss_pred             Cceeh----hhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhh
Confidence            21111    1113456888886632   22  3678999999999999999999998553

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.78  E-value=2e-18  Score=133.83  Aligned_cols=107  Identities=26%  Similarity=0.396  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhh
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS  115 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~  115 (208)
                      +++.....++.+++.++.|||+.   +++|+|+++.||+++.++.++++|||.+...............++..|++||..
T Consensus        95 ~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~  171 (225)
T smart00221       95 LSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVL  171 (225)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHh
Confidence            78889999999999999999998   999999999999999999999999999887654321112233467889999998


Q ss_pred             -hcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          116 -KNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       116 -~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                       ....++.++|+|+||++++++++|+.||..
T Consensus       172 ~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      172 LGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence             666778899999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.78  E-value=1.2e-18  Score=156.55  Aligned_cols=54  Identities=33%  Similarity=0.489  Sum_probs=50.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ..+....++.++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus        99 ~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          99 GYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            4577888899999999999999998   99999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.77  E-value=1.1e-18  Score=153.08  Aligned_cols=173  Identities=18%  Similarity=0.184  Sum_probs=123.2

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~   96 (208)
                      +...|.+++++..  +...+..+..+.|..|||+|+.|||.+   .++||||-.+|||+.....+|+.|||+++.+..+.
T Consensus       778 ~mP~G~LlDyvr~--hr~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  778 LMPLGCLLDYVRE--HRDNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             hcccchHHHHHHH--hhccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            4455556666554  456788888999999999999999998   99999999999999999999999999999886655


Q ss_pred             Cceee-eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCCCCCccchhhhhhhhhhhhhh--------
Q 042116           97 TRTFT-LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEIDPSKPEEIVFINLTYKCFIDR--------  166 (208)
Q Consensus        97 ~~~~~-~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~--------  166 (208)
                      ..... ...-.+.|+|-|.+....|++++|||||||++||++| |..|+..-+..+-.. +.+.-.+.....        
T Consensus       853 ~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~d-lle~geRLsqPpiCtiDVy~  931 (1177)
T KOG1025|consen  853 KEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPD-LLEKGERLSQPPICTIDVYM  931 (1177)
T ss_pred             ccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhH-HHhccccCCCCCCccHHHHH
Confidence            44322 2223567899999999999999999999999999988 778887553222111 111100000000        


Q ss_pred             hhhhcccCCCCCHHHHHHHHHHHHHHHhc
Q 042116          167 EFDKLVHGEEVNKKTLENMIKSVVMMLEG  195 (208)
Q Consensus       167 ~~~~~~d~~~~~~~~~~~~~~~v~~~L~~  195 (208)
                      .+.+...-....++..+++..+.-+|+..
T Consensus       932 ~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  932 VMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             HHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence            11222223355667778888888777764

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.76  E-value=1.4e-18  Score=153.11  Aligned_cols=130  Identities=20%  Similarity=0.218  Sum_probs=107.1

Q ss_pred             ccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           12 ERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ++..--.+++++--+|++.-...++.+..+..|+++++.|+.+||..   .++|||+|-.|||++.++.+|++|||++..
T Consensus        96 LWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VKLvDFGvSaQ  172 (953)
T KOG0587|consen   96 LWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  172 (953)
T ss_pred             EEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEEEeeeeeeee
Confidence            33333344555666777766688999999999999999999999998   999999999999999999999999999877


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      +....... ...+||+.|||||++..     ..|+..+|+||+|++..||..|.+|+..
T Consensus       173 ldsT~grR-nT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~D  230 (953)
T KOG0587|consen  173 LDSTVGRR-NTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCD  230 (953)
T ss_pred             eecccccc-cCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccC
Confidence            65433332 34569999999998853     3467889999999999999999999864

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.76  E-value=1.7e-18  Score=132.79  Aligned_cols=115  Identities=19%  Similarity=0.315  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      .++.-.+...+.+++.||.|+|+.   ||+|||+||.|++++... .++|+|+|+|...-++....  ..+.+..|..||
T Consensus       128 tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYn--VRVASRyfKGPE  202 (338)
T KOG0668|consen  128 TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYN--VRVASRYFKGPE  202 (338)
T ss_pred             hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCCceee--eeeehhhcCCch
Confidence            345556678899999999999999   999999999999998754 48999999998876655432  334577788999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchh
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV  154 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~  154 (208)
                      .+.. ..|+.+-|+|||||++..|+..+.||....+..++..
T Consensus       203 LLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLV  244 (338)
T KOG0668|consen  203 LLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLV  244 (338)
T ss_pred             heeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHH
Confidence            8865 4478899999999999999999999987656655543

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.75  E-value=8.5e-19  Score=148.91  Aligned_cols=106  Identities=25%  Similarity=0.330  Sum_probs=93.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..|..|++.|++.||+.   +|+|||||-+|+.++.+|.+||+|||.+.....   .....++||..|+||
T Consensus       664 kp~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~klidfgsaa~~ks---gpfd~f~gtv~~aap  737 (772)
T KOG1152|consen  664 KPRMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKS---GPFDVFVGTVDYAAP  737 (772)
T ss_pred             cCccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEeeccchhhhcC---CCcceeeeeccccch
Confidence            46788888889999999999999999   999999999999999999999999999865432   234566799999999


Q ss_pred             hhhhcCCC-CccccchhHHHHHHHHHhcCcCCC
Q 042116          113 EWSKNTPI-SMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       113 E~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      |++.+.+| +...|||++|+++|.++....||+
T Consensus       738 evl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  738 EVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             hhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            99999888 667899999999999998888875

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.75  E-value=4.6e-19  Score=149.06  Aligned_cols=129  Identities=22%  Similarity=0.216  Sum_probs=105.1

Q ss_pred             ccceEEeCCCC-cchHHH-HhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCC
Q 042116           12 ERGCEVKGKRK-QFGAVV-RRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGL   88 (208)
Q Consensus        12 ~~~~~~~~~~~-~~~~l~-~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~   88 (208)
                      .|.|.+..... ++-.++ +.+.+-.+...+...++.|+..||..|-.-   +|+|.||||.|||+.... .+||||||.
T Consensus       507 nHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDfGS  583 (752)
T KOG0670|consen  507 NHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDFGS  583 (752)
T ss_pred             ceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccCcc
Confidence            35676666544 555555 446777888888899999999999999876   999999999999998654 579999999


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |........   +++.-+..|.|||++.+.+|+...|+||.||+|||+.||+..|.+.
T Consensus       584 A~~~~enei---tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~  638 (752)
T KOG0670|consen  584 ASFASENEI---TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGR  638 (752)
T ss_pred             ccccccccc---cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCC
Confidence            977543332   3333567899999999999999999999999999999999998765

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=4.3e-18  Score=142.13  Aligned_cols=64  Identities=25%  Similarity=0.372  Sum_probs=57.0

Q ss_pred             ccccceEEeCC-CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE
Q 042116           10 EGERGCEVKGK-RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM   75 (208)
Q Consensus        10 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill   75 (208)
                      -|.|.|-+..- |.++-.+..+.....++......|+.||+.||.|||..|  +|||.||||+|||+
T Consensus       157 NG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl  221 (590)
T KOG1290|consen  157 NGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLL  221 (590)
T ss_pred             CCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeee
Confidence            47788887664 447777888888999999999999999999999999998  99999999999999

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=136.70  Aligned_cols=109  Identities=22%  Similarity=0.287  Sum_probs=93.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee-eecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL-IRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~-~~g~~~y~aP  112 (208)
                      ..++....+.++.|++.|+.|||++   ++||.||..+|+++++.-.+||+|-.+++.+.+.+...... ......||+|
T Consensus       391 qtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMsl  467 (563)
T KOG1024|consen  391 QTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSL  467 (563)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhc---CcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCH
Confidence            4556677788999999999999999   99999999999999999999999999999877665543321 2245689999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEI  145 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~  145 (208)
                      |.+.+..|+..+|+|||||++|||+| |+.|+..
T Consensus       468 Eal~n~~yssasDvWsfGVllWELmtlg~~Pyae  501 (563)
T KOG1024|consen  468 EALQNSHYSSASDVWSFGVLLWELMTLGKLPYAE  501 (563)
T ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccc
Confidence            99999999999999999999999888 6777653

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.67  E-value=9.8e-16  Score=116.56  Aligned_cols=110  Identities=35%  Similarity=0.539  Sum_probs=89.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCcee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ..+..+..... ..++...+..++.+++++++|||+.   +++|+||+|.||+++. ++.++++||+.+........ ..
T Consensus        76 ~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~-~~  150 (215)
T cd00180          76 GSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS-LL  150 (215)
T ss_pred             CcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc-hh
Confidence            34444443322 4688899999999999999999999   9999999999999999 89999999999987644321 11


Q ss_pred             eeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHH
Q 042116          101 TLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEI  136 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el  136 (208)
                      ....+...|++||..... ..+.++|+|++|++++++
T Consensus       151 ~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         151 KTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             hcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            223367889999998876 778999999999999999

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=5.4e-17  Score=143.31  Aligned_cols=126  Identities=21%  Similarity=0.238  Sum_probs=101.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.+ .+|..+...   ..+....+-.+..|+..|++|+|+.   ||.|||+|++|+++..++.+||+|||.+..+.-.
T Consensus       401 E~~~~-Dlf~~~~~~---~~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~  473 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSN---GKLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVFRYP  473 (601)
T ss_pred             hcccH-HHHHHHhcc---cccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceeeccC
Confidence            55555 444443332   3566666668899999999999999   9999999999999999999999999999876543


Q ss_pred             CC---ceeeeeecCCCcCchhhhhcCCCC-ccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           96 QT---RTFTLIRGTRGYMAPEWSKNTPIS-MKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        96 ~~---~~~~~~~g~~~y~aPE~~~~~~~~-~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      ..   ......+|+..|+|||.+....|. ...||||.|+++..|.+|+.||.....
T Consensus       474 ~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~  530 (601)
T KOG0590|consen  474 WEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKK  530 (601)
T ss_pred             cchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccc
Confidence            33   334456799999999999988885 458999999999999999999976533

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-15  Score=125.69  Aligned_cols=125  Identities=22%  Similarity=0.216  Sum_probs=104.2

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-----CcEEEEecCCce--ec
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-----WTAKISDFGLAK--LL   92 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-----~~~kl~dfg~~~--~~   92 (208)
                      -|.++.++........++..+..+|+.|++.+|.++|+.   |++||||||.|+++...     ..+.+.|||+++  ..
T Consensus       103 ~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~  179 (322)
T KOG1164|consen  103 LGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKY  179 (322)
T ss_pred             cCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecCCCccccc
Confidence            556788888777778999999999999999999999999   99999999999999865     358999999998  32


Q ss_pred             CCCCC-----c-e-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           93 MPDQT-----R-T-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        93 ~~~~~-----~-~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      .....     . . .....||..|+++..-.+...+++.|+||++.++.+++.|..||....
T Consensus       180 ~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~  241 (322)
T KOG1164|consen  180 VGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALE  241 (322)
T ss_pred             cCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCcccc
Confidence            21111     0 1 123459999999999888889999999999999999999999996553

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.59  E-value=9e-15  Score=117.59  Aligned_cols=109  Identities=35%  Similarity=0.462  Sum_probs=93.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCc-----eeeeeecCCC
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTR-----TFTLIRGTRG  108 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~-----~~~~~~g~~~  108 (208)
                      .+.......++.|++.++.|+|+.   +++|||+||+||+++... .++++|||.++........     ......|+..
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~  173 (384)
T COG0515          97 PLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPG  173 (384)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccc
Confidence            788888899999999999999999   899999999999999988 6999999999865443322     2344568999


Q ss_pred             cCchhhhhc---CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN---TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~---~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++||.+..   ..++...|+||+|++++++++|..|+...
T Consensus       174 ~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~  214 (384)
T COG0515         174 YMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGE  214 (384)
T ss_pred             cCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999987   56788999999999999999999997654

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.59  E-value=2.2e-15  Score=123.84  Aligned_cols=110  Identities=25%  Similarity=0.283  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecC-----------------C--
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLM-----------------P--   94 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~-----------------~--   94 (208)
                      .+....+...++.+..||.++|+.   ||||||+||.|+|.+.. +.-.|.|||++....                 .  
T Consensus       128 ~l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~  204 (418)
T KOG1167|consen  128 SLSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAM  204 (418)
T ss_pred             cCCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccc
Confidence            455777788999999999999999   99999999999999754 456889999987210                 0  


Q ss_pred             CC------------------------CceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           95 DQ------------------------TRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        95 ~~------------------------~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      +.                        ........||++|.|||++... .-++++||||.||+++.+++++.||....
T Consensus       205 g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~  282 (418)
T KOG1167|consen  205 GKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAK  282 (418)
T ss_pred             cCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCc
Confidence            00                        0000112389999999988543 45889999999999999999999998653

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=9.2e-16  Score=129.46  Aligned_cols=115  Identities=29%  Similarity=0.398  Sum_probs=95.9

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC-----C
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-----T   97 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~-----~   97 (208)
                      +-+.+..+....+.++.....++.|++.|+.|   +   +.+|||+||.||++..+..+||.|||+........     .
T Consensus       343 ledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~  416 (516)
T KOG1033|consen  343 LEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAA  416 (516)
T ss_pred             HHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhheeecccCCcccchh
Confidence            44555556677788889999999999999999   5   89999999999999999999999999987665443     1


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNM  143 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~  143 (208)
                      ...+...||..||+||.+.+..|+.++||||+|++++|++. -..++
T Consensus       417 a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~  463 (516)
T KOG1033|consen  417 ASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQF  463 (516)
T ss_pred             hhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHH
Confidence            22344569999999999999999999999999999999988 44443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.53  E-value=4.6e-14  Score=113.70  Aligned_cols=123  Identities=18%  Similarity=0.252  Sum_probs=82.9

Q ss_pred             EeCCCCcchHHHHhhhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           17 VKGKRKQFGAVVRRREN-----KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~-----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +..-..++..+..-...     ..+....++.+..|+++.+++||+.   |++|+||+|+|++++.+|.+.|+||+....
T Consensus       118 ~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r  194 (288)
T PF14531_consen  118 MPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHGDIKPENFLLDQDGGVFLGDFSSLVR  194 (288)
T ss_dssp             EE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEE-TTS-EEE--GGGEEE
T ss_pred             cchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEecccceeeEEEcCCCCEEEcChHHHee
Confidence            33344455555443211     2344566677889999999999999   999999999999999999999999987765


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhc--------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKN--------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~--------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  .  ......+..|.+||....        ..++.+.|.|++|+++|.+.+++.||...
T Consensus       195 ~g~--~--~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  195 AGT--R--YRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             TTE--E--EEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             cCc--e--eeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCC
Confidence            321  1  111234567899997643        24688899999999999999999999755

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.51  E-value=6e-15  Score=126.80  Aligned_cols=95  Identities=24%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCC
Q 042116           41 GLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPI  120 (208)
Q Consensus        41 ~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  120 (208)
                      .......++-|+..+|+.   +|+|||+|++||+++.+|++++.|||+++........     +||.-|+|||++.  ..
T Consensus        99 ~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~-----cgt~eymApEI~~--gh  168 (612)
T KOG0603|consen   99 VAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA-----CGTYEYRAPEIIN--GH  168 (612)
T ss_pred             HHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhhhc-----ccchhhhhhHhhh--cc
Confidence            345677888999999999   9999999999999999999999999999876544332     6899999999998  35


Q ss_pred             CccccchhHHHHHHHHHhcCcCCCC
Q 042116          121 SMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       121 ~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ...+|.||||++.++|+||..||..
T Consensus       169 ~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  169 LSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             CCcccchhhhhhHHHHhhCCCCCch
Confidence            6789999999999999999999975

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.49  E-value=8.7e-14  Score=112.08  Aligned_cols=125  Identities=18%  Similarity=0.186  Sum_probs=103.4

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-----CcEEEEecCCceecCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-----WTAKISDFGLAKLLMPD   95 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-----~~~kl~dfg~~~~~~~~   95 (208)
                      |+++.+|++ .-...++..+...+|.|++.-++|+|++   .+|+|||||+|.||...     ..+.++|||+++.....
T Consensus       107 GPSLEDLFD-~CgR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp  182 (449)
T KOG1165|consen  107 GPSLEDLFD-LCGRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDP  182 (449)
T ss_pred             CcCHHHHHH-HhcCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhhcCc
Confidence            456666665 3556888999999999999999999999   99999999999999643     34789999999987665


Q ss_pred             CCceee------eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCC
Q 042116           96 QTRTFT------LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSK  149 (208)
Q Consensus        96 ~~~~~~------~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~  149 (208)
                      .+....      ...||.+||+-..-.+..-+.+.|+=|+|-++.+.+-|..||.+....
T Consensus       183 ~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~  242 (449)
T KOG1165|consen  183 KTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAD  242 (449)
T ss_pred             cccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCc
Confidence            554332      235899999988777777889999999999999999999999876443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.48  E-value=1.5e-14  Score=130.43  Aligned_cols=96  Identities=27%  Similarity=0.370  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC------------c--eeeeeecCCCcCchh
Q 042116           48 QPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT------------R--TFTLIRGTRGYMAPE  113 (208)
Q Consensus        48 i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~------------~--~~~~~~g~~~y~aPE  113 (208)
                      .+.+++|||+.   +|+|||+||+|.++..-|++|+.|||+++.......            +  .....+||+.|.|||
T Consensus       152 mvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  152 MVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            36889999999   999999999999999999999999999875321110            0  112346999999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.-..|+..+|+|++|+++||.+.|..||..+
T Consensus       229 VilrqgygkpvdwwamGiIlyeFLVgcvpffGd  261 (1205)
T KOG0606|consen  229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  261 (1205)
T ss_pred             hhhhhccCCCccHHHHHHHHHHHheeeeeccCC
Confidence            999888999999999999999999999999876

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.47  E-value=2.1e-13  Score=116.56  Aligned_cols=135  Identities=24%  Similarity=0.379  Sum_probs=102.7

Q ss_pred             ccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCe-EEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           12 ERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPI-IHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~i-iHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ...-+|++.|.+.+-+..  ..-.+++-....++.+++.||+|+|+.   +| .|+.+++.|++++..+.+|++|||+..
T Consensus        23 ~~i~~~c~rGsl~D~i~~--~~~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~s~nClvd~~w~lklt~~Gl~~   97 (484)
T KOG1023|consen   23 IVIWEYCSRGSLLDILSN--EDIKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALKSSNCLVDSRWVLKLTDFGLNS   97 (484)
T ss_pred             EEEEeeecCccHHhHHhc--cccCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeeccccceeeeeEEEEechhhhcc
Confidence            344566777776665554  566788888889999999999999987   54 999999999999999999999999987


Q ss_pred             ecCCCCC-ceeeeeecCCCcCchhhhhcCC-------CCccccchhHHHHHHHHHhcCcCCCCCCCCcc
Q 042116           91 LLMPDQT-RTFTLIRGTRGYMAPEWSKNTP-------ISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE  151 (208)
Q Consensus        91 ~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~-------~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~  151 (208)
                      ....... .......-..-|.|||.+....       .+.+.|+||||++++|+++.+.||.......+
T Consensus        98 ~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~  166 (484)
T KOG1023|consen   98 LLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVED  166 (484)
T ss_pred             cccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCC
Confidence            6532100 1111112345689999987631       36779999999999999999999987544443

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.44  E-value=8.4e-14  Score=120.46  Aligned_cols=128  Identities=20%  Similarity=0.209  Sum_probs=95.9

Q ss_pred             ccccce-EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCC
Q 042116           10 EGERGC-EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL   88 (208)
Q Consensus        10 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~   88 (208)
                      ++++.| ||+++|.+-+-..   -...++...+-...++..+||+|||+.   +=+|||||-.||+++..+.+|++|||.
T Consensus        85 dklwicMEycgggslQdiy~---~TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgv  158 (829)
T KOG0576|consen   85 DKLWICMEYCGGGSLQDIYH---VTGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGV  158 (829)
T ss_pred             cCcEEEEEecCCCcccceee---ecccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCc
Confidence            344555 4555554443222   224566666678899999999999999   889999999999999999999999998


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhh---hcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWS---KNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~---~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      +-.+...-. .....+||+.|+|||+.   +.+.|...+|+|+.|+...|+-....|..
T Consensus       159 saqitati~-KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf  216 (829)
T KOG0576|consen  159 SAQITATIA-KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF  216 (829)
T ss_pred             hhhhhhhhh-hhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc
Confidence            755432111 12345699999999976   45668999999999999888877776654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.38  E-value=4.7e-13  Score=103.73  Aligned_cols=125  Identities=23%  Similarity=0.161  Sum_probs=98.5

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC---CcEEEEecCCceecCCCC
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF---WTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~dfg~~~~~~~~~   96 (208)
                      -|+++.+++.. -....+..+.+-++-|++.-+.|+|.+   ++|||||||+|.|..-+   ..+.++|||+++.+....
T Consensus        93 LGPsLEdLfnf-C~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~  168 (341)
T KOG1163|consen   93 LGPSLEDLFNF-CSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIR  168 (341)
T ss_pred             cCccHHHHHHH-HhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhhhcccc
Confidence            45566666643 455778889999999999999999999   99999999999999754   346799999998765544


Q ss_pred             Ccee------eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           97 TRTF------TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        97 ~~~~------~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      +...      ....||..|++-....+..-+...|+-|+|.++.+.-.|+.||.....
T Consensus       169 t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  169 TRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             ccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            3322      223488899887666555567889999999999999999999987633

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.37  E-value=8.1e-13  Score=110.37  Aligned_cols=72  Identities=24%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEeCC-CCCcEEEcCCCcEEEEecCCceecCCCCCce-------eeeeecCCCcCchh
Q 042116           42 LLLILPQPSCNVYLHNECEAPIIHCDI-KPHNILMDEFWTAKISDFGLAKLLMPDQTRT-------FTLIRGTRGYMAPE  113 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH~~~~~~iiHrdl-k~~nill~~~~~~kl~dfg~~~~~~~~~~~~-------~~~~~g~~~y~aPE  113 (208)
                      ..++.++++||.|||+.   +|+|||| ||+||+++.++.++|+|||+++.........       .....+++.|.+||
T Consensus       114 ~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe  190 (365)
T PRK09188        114 PAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPD  190 (365)
T ss_pred             HHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcc
Confidence            36788999999999998   9999999 9999999999999999999998765432211       12345788899999


Q ss_pred             hhh
Q 042116          114 WSK  116 (208)
Q Consensus       114 ~~~  116 (208)
                      ++.
T Consensus       191 ~~~  193 (365)
T PRK09188        191 ALT  193 (365)
T ss_pred             cCC
Confidence            874

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.36  E-value=6.9e-12  Score=103.49  Aligned_cols=108  Identities=22%  Similarity=0.247  Sum_probs=80.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE--cCCCc--EEEEecCCceecCCCCC-----ceeeeeec
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM--DEFWT--AKISDFGLAKLLMPDQT-----RTFTLIRG  105 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill--~~~~~--~kl~dfg~~~~~~~~~~-----~~~~~~~g  105 (208)
                      ..+.....-++.|+++|+.|||++   +|.|||+|++|||+  +.+..  +.++|||.+-.-....-     ...-...|
T Consensus       337 ~~s~r~~~~~laQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GG  413 (598)
T KOG4158|consen  337 HRSYRTGRVILAQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGG  413 (598)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCC
Confidence            445556667899999999999999   99999999999999  34443  57899998743211000     00111236


Q ss_pred             CCCcCchhhhhcCCC------CccccchhHHHHHHHHHhcCcCCCC
Q 042116          106 TRGYMAPEWSKNTPI------SMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       106 ~~~y~aPE~~~~~~~------~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      +...+|||+....+-      -.++|.|+.|.+.||+++.+.||+.
T Consensus       414 Na~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~  459 (598)
T KOG4158|consen  414 NAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYK  459 (598)
T ss_pred             cceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccc
Confidence            777899998865431      2579999999999999999999986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.33  E-value=1.6e-12  Score=117.97  Aligned_cols=104  Identities=24%  Similarity=0.289  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec--CCCCCceeee----eecCCCcCc
Q 042116           38 SNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL--MPDQTRTFTL----IRGTRGYMA  111 (208)
Q Consensus        38 ~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~--~~~~~~~~~~----~~g~~~y~a  111 (208)
                      .-+.+-|+.|++.||.-+|..   +|.|+|||.+|||++.=+.+.|+||...+..  +.++......    -..-..|.|
T Consensus       119 ~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiA  195 (1431)
T KOG1240|consen  119 LIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIA  195 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecC
Confidence            344456899999999999999   9999999999999999888999999876542  2222221211    112346999


Q ss_pred             hhhhhcC----------C-CCccccchhHHHHHHHHHhc-CcCCC
Q 042116          112 PEWSKNT----------P-ISMKANVFNYGVVLLEIVCC-RRNME  144 (208)
Q Consensus       112 PE~~~~~----------~-~~~~~Di~s~Gv~l~el~tg-~~p~~  144 (208)
                      ||.+...          + .+++.||||+||++.|+++- +++|.
T Consensus       196 PERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~  240 (1431)
T KOG1240|consen  196 PERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT  240 (1431)
T ss_pred             hHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc
Confidence            9987431          1 46789999999999998884 66664

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.4e-11  Score=112.53  Aligned_cols=122  Identities=19%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-------CCCcEEEEecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-------EFWTAKISDFGL   88 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-------~~~~~kl~dfg~   88 (208)
                      +|...|.+++.+-   .++-+++...+.++.|++.-+..||..   +|||+||||+|.++.       .+..++|+|||.
T Consensus       774 ey~~~Gtlld~~N---~~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~  847 (974)
T KOG1166|consen  774 EYSPYGTLLDLIN---TNKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGR  847 (974)
T ss_pred             eccccccHHHhhc---cCCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEEeccc
Confidence            3444444444332   678889999999999999999999999   999999999999994       345589999999


Q ss_pred             ceecCCC-CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCC
Q 042116           89 AKLLMPD-QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNM  143 (208)
Q Consensus        89 ~~~~~~~-~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~  143 (208)
                      +..+..- .........+|-.+-++|+..+++++.++|.|.++.+++.|+.|+.--
T Consensus       848 siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q  903 (974)
T KOG1166|consen  848 SIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYME  903 (974)
T ss_pred             ceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHH
Confidence            8654211 112455566788899999999999999999999999999999998653

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.30  E-value=4.8e-12  Score=97.61  Aligned_cols=101  Identities=20%  Similarity=0.083  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeCC-CCCcEEEcCCCcEEEEecCCceecCCCCCc----e--------eeeeecCCCc
Q 042116           43 LLILPQPSCNVYLHNECEAPIIHCDI-KPHNILMDEFWTAKISDFGLAKLLMPDQTR----T--------FTLIRGTRGY  109 (208)
Q Consensus        43 ~i~~~i~~~l~ylH~~~~~~iiHrdl-k~~nill~~~~~~kl~dfg~~~~~~~~~~~----~--------~~~~~g~~~y  109 (208)
                      .++.|++.+|.++|+.   ||+|||| ||.||+++.++.++|+|||++.........    .        ......++.|
T Consensus        95 ~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~  171 (218)
T PRK12274         95 AYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAA  171 (218)
T ss_pred             HHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5778999999999999   9999999 799999999999999999999854432210    0        0011246667


Q ss_pred             CchhhhhcC-CCC-ccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKNT-PIS-MKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~~-~~~-~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++|+...-. ..+ ...+.++.|..+|.++|++.+...+
T Consensus       172 l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        172 LTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             CCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            777644321 223 4456779999999999999887654

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.28  E-value=2e-11  Score=93.51  Aligned_cols=74  Identities=19%  Similarity=0.031  Sum_probs=58.8

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ...||..++........   ...++......++.|++.++.++|+ .   +|+||||||+||+++ ++.++|+|||+++.
T Consensus        94 lVmE~~~g~~~~~~~l~---~~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll~-~~~~~liDFG~a~~  166 (190)
T cd05145          94 LVMEFIGDDGSPAPRLK---DVPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILYH-DGKPYIIDVSQAVE  166 (190)
T ss_pred             EEEEEecCCCchhhhhh---hccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEEE-CCCEEEEEccccee
Confidence            45666665533333222   2456778888999999999999999 8   999999999999998 78999999999976


Q ss_pred             cC
Q 042116           92 LM   93 (208)
Q Consensus        92 ~~   93 (208)
                      ..
T Consensus       167 ~~  168 (190)
T cd05145         167 LD  168 (190)
T ss_pred             cC
Confidence            53

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.25  E-value=1.8e-11  Score=93.78  Aligned_cols=73  Identities=15%  Similarity=0.044  Sum_probs=57.2

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHH-HhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYL-HNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~yl-H~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ...||.+++.......   ....++......++.|++.+|.|+ |+.   +|+||||||+||+++ ++.++|+|||++..
T Consensus        94 iVmE~i~g~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli~-~~~v~LiDFG~a~~  166 (190)
T cd05147          94 LVMEFIGDDGWAAPRL---KDAPLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLYH-DGKLYIIDVSQSVE  166 (190)
T ss_pred             EEEEEeCCCCCcchhh---hcCCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEE-CCcEEEEEcccccc
Confidence            4556666643332222   235678888999999999999999 687   999999999999998 46899999999864


Q ss_pred             c
Q 042116           92 L   92 (208)
Q Consensus        92 ~   92 (208)
                      .
T Consensus       167 ~  167 (190)
T cd05147         167 H  167 (190)
T ss_pred             C
Confidence            3

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.20  E-value=3.1e-11  Score=95.32  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEE--ecCCceecCCCCCcee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKIS--DFGLAKLLMPDQTRTF  100 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~--dfg~~~~~~~~~~~~~  100 (208)
                      ++..+.+....--.+...+++++.++|+|++|||+. .+-|....|++..++++.+..++|.  |--++..  .      
T Consensus       273 slynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfq--e------  343 (448)
T KOG0195|consen  273 SLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQ--E------  343 (448)
T ss_pred             HHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeee--c------
Confidence            344555666777788899999999999999999997 5566677799999999999888764  3222211  0      


Q ss_pred             eeeecCCCcCchhhhhcCCCC---ccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPIS---MKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~---~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....-++.|++||.+...+-+   .++|+|||++++||+.|...||...
T Consensus       344 ~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadl  392 (448)
T KOG0195|consen  344 VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADL  392 (448)
T ss_pred             cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccC
Confidence            011136789999999766543   5689999999999999999999754

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.19  E-value=9.4e-12  Score=97.52  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCcc
Q 042116           44 LILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK  123 (208)
Q Consensus        44 i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~  123 (208)
                      ...+++.++..+|+.   +++|||++|+|++++.++ ++++|||..+.......             ...++....+..+
T Consensus       140 ~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a-------------~d~~vler~y~~~  202 (232)
T PRK10359        140 VKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKA-------------KDRIDLERHYGIK  202 (232)
T ss_pred             HHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-EEEEECCCcccccchhh-------------HHHHHHHhHhccc
Confidence            466899999999999   999999999999999888 99999998765422111             1113334456678


Q ss_pred             ccchhHHHHHHHHH
Q 042116          124 ANVFNYGVVLLEIV  137 (208)
Q Consensus       124 ~Di~s~Gv~l~el~  137 (208)
                      +|+||||+++....
T Consensus       203 ~di~~lg~~~~~~~  216 (232)
T PRK10359        203 NEIKDLGYYLLIYK  216 (232)
T ss_pred             ccccceeEeehHHH
Confidence            99999999876553

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=3.2e-11  Score=106.90  Aligned_cols=131  Identities=25%  Similarity=0.314  Sum_probs=98.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLH-NECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH-~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~   92 (208)
                      .++..++.+|..... ......+....-....|+..++.|+| ..   ++.|||+||+|.+++.++ ..+++|||++...
T Consensus       100 ~~~s~g~~~f~~i~~-~~~~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~  175 (601)
T KOG0590|consen  100 LSYSDGGSLFSKISH-PDSTGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLATAY  175 (601)
T ss_pred             cCccccccccccccc-CCccCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhccc
Confidence            344344445544421 11114445555588999999999999 76   999999999999999999 8999999999877


Q ss_pred             CC--CCCceeeeeec-CCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCCCCC
Q 042116           93 MP--DQTRTFTLIRG-TRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEIDPSK  149 (208)
Q Consensus        93 ~~--~~~~~~~~~~g-~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~  149 (208)
                      ..  +........+| ++.|+|||...+. ......|+||.|+++..+++|..|+......
T Consensus       176 ~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~  236 (601)
T KOG0590|consen  176 RNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRK  236 (601)
T ss_pred             cccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccc
Confidence            65  22333445568 9999999988764 3467789999999999999999999765333

>smart00090 RIO RIO-like kinase

Probab=98.98  E-value=1.2e-09  Score=86.62  Aligned_cols=73  Identities=21%  Similarity=0.068  Sum_probs=54.8

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC-eEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP-IIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ...++..+..+.....   ............++.|++.++.+||+.   + ++|||+||+||+++ ++.++++|||.+..
T Consensus       125 lV~E~~~g~~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~  197 (237)
T smart00090      125 LVMEFIGGDGLPAPRL---KDVEPEEEEEFELYDDILEEMRKLYKE---GELVHGDLSEYNILVH-DGKVVIIDVSQSVE  197 (237)
T ss_pred             EEEEEecCCccccccc---ccCCcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCChhhEEEE-CCCEEEEEChhhhc
Confidence            4445555544332221   123345556678999999999999999   8 99999999999999 78899999998865


Q ss_pred             c
Q 042116           92 L   92 (208)
Q Consensus        92 ~   92 (208)
                      .
T Consensus       198 ~  198 (237)
T smart00090      198 L  198 (237)
T ss_pred             c
Confidence            4

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.88  E-value=5.7e-09  Score=82.77  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             cceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           13 RGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ...++..+...+..+...   ..++..    .+.+++.+|.+||+.   ||+||||||.|||++.++.++|+|||.++..
T Consensus       123 lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        123 ILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFHDA---GVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             EEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            344555554555555433   233333    367899999999999   9999999999999998889999999988653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.86  E-value=7.1e-09  Score=78.68  Aligned_cols=50  Identities=22%  Similarity=0.032  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           39 NLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        39 ~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      .....++.+++.++.++|+ .   +|+|+||||+||+++ ++.++++|||.+...
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119         114 EDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCcEEEEECcccccc
Confidence            5567899999999999999 7   999999999999999 889999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.82  E-value=7.9e-09  Score=79.45  Aligned_cols=50  Identities=22%  Similarity=0.044  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           40 LGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        40 ~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ....++.+++.++.++|+.   +++||||+|.||+++.++.++|+|||.+...
T Consensus       126 ~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         126 DPEEVLDEILEEIVKAYKH---GIIHGDLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             cHHHHHHHHHHHHHHHHHC---CCCcCCCCcccEEEcCCCcEEEEECCccccC
Confidence            3457889999999999998   9999999999999999999999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.79  E-value=1.8e-08  Score=77.94  Aligned_cols=48  Identities=29%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           40 LGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        40 ~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .+..++.+++.+|.++|+.   +++|+|++|.||+++ ++.++++|||.+..
T Consensus        96 ~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         96 EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            6778999999999999999   999999999999999 77899999998765

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.78  E-value=1.9e-08  Score=77.13  Aligned_cols=45  Identities=29%  Similarity=0.315  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           43 LLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        43 ~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .++.+++.+|.++|+.   +++|+|++|.||+++ ++.++++|||.+..
T Consensus        94 ~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        94 ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            7899999999999999   999999999999999 78899999998765

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.75  E-value=1.3e-08  Score=89.72  Aligned_cols=48  Identities=25%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           41 GLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        41 ~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ...++.+++.+|.|||+.   +++|||+||+||++ .++.++|+|||+++..
T Consensus       430 ~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        430 NPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             HHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            467899999999999998   99999999999999 5778999999998753

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=2.1e-08  Score=81.44  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=94.2

Q ss_pred             ccccceEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCC
Q 042116           10 EGERGCEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL   88 (208)
Q Consensus        10 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~   88 (208)
                      +-.+.-+|.+.+..-..|.+.. ..+.+......+++.||..||.|||+ |.|+|+|+++....|++..++-+|+..-..
T Consensus       146 rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~PpiihgnlTc~tifiq~ngLIkig~~ap  224 (458)
T KOG1266|consen  146 RVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDPPIIHGNLTCDTIFIQHNGLIKIGSVAP  224 (458)
T ss_pred             ceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCCccccCCcchhheeecCCceEEecccCc
Confidence            4445567777776655555443 44677788888999999999999998 588999999999999999998888743211


Q ss_pred             ceec---CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCc
Q 042116           89 AKLL---MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRR  141 (208)
Q Consensus        89 ~~~~---~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~  141 (208)
                      ...-   ............+.++|.+||+-.....+..+|||+||...++|..+..
T Consensus       225 ~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEi  280 (458)
T KOG1266|consen  225 DSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEI  280 (458)
T ss_pred             cccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhee
Confidence            1100   0000111122336778899998777677889999999999999988764

>PRK10345 hypothetical protein; Provisional

Probab=98.69  E-value=5.2e-08  Score=75.75  Aligned_cols=60  Identities=17%  Similarity=0.146  Sum_probs=44.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHH-HHHHhCCCCCeEEeCCCCCcEEEcC----CCcEEEEecCCc
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDE----FWTAKISDFGLA   89 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l-~ylH~~~~~~iiHrdlk~~nill~~----~~~~kl~dfg~~   89 (208)
                      +.+.+++.+.   .++..  ..++.+++.++ +|||+.   +|+||||||+||+++.    +..++|+||+.+
T Consensus        92 ~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         92 ITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             hhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            4555555442   34444  35677888888 999999   9999999999999974    347999995433

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.61  E-value=4.3e-07  Score=76.33  Aligned_cols=113  Identities=13%  Similarity=0.124  Sum_probs=89.5

Q ss_pred             HhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCC
Q 042116           29 RRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG  108 (208)
Q Consensus        29 ~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~  108 (208)
                      .+.......|...++.++.+|.+.+-||..   |..-+|++++|+|+++++.+.|.|-.....-  .........+|...
T Consensus       107 RRqs~P~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~--~ng~~~~cpVg~~e  181 (637)
T COG4248         107 RRQSYPHCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVDSDSFQIN--ANGTLHLCPVGVSE  181 (637)
T ss_pred             hcccCCccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEcccceeec--cCCceEecccCccc
Confidence            344556779999999999999999999999   9999999999999999999999875443332  22233444568899


Q ss_pred             cCchhhhh-----cCCCCccccchhHHHHHHHHHhc-CcCCCCC
Q 042116          109 YMAPEWSK-----NTPISMKANVFNYGVVLLEIVCC-RRNMEID  146 (208)
Q Consensus       109 y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg-~~p~~~~  146 (208)
                      |++||.-.     +..-+...|.|.+|+++++++.| +.||.+.
T Consensus       182 ftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI  225 (637)
T COG4248         182 FTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGI  225 (637)
T ss_pred             cCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcc
Confidence            99999754     22335678999999999998877 9999764

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.59  E-value=1.9e-07  Score=67.40  Aligned_cols=55  Identities=22%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           37 ESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        37 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +......++.+++.+++++|.....+++|+|++|.||+++..+.++++||+.+..
T Consensus        84 ~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          84 SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            4466678899999999999987445799999999999999988999999998754

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.51  E-value=4.9e-08  Score=89.16  Aligned_cols=108  Identities=22%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC---------------------C
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM---------------------P   94 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~---------------------~   94 (208)
                      .........+..+.++++|||..   .+.|||++|.|.+...++..++.+|+......                     .
T Consensus       901 ~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~  977 (1205)
T KOG0606|consen  901 LSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSR  977 (1205)
T ss_pred             cccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccc
Confidence            44445556677788999999997   79999999999999999999999997332110                     0


Q ss_pred             CCC---------ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQT---------RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~---------~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...         .......+|+.|.+||...+......+|+|++|+++++.++|..||...
T Consensus       978 ~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen  978 SERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             cccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc
Confidence            000         0011234899999999999988889999999999999999999999765

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.39  E-value=6.2e-08  Score=85.14  Aligned_cols=100  Identities=21%  Similarity=0.350  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee--------eeeecCCCcCch
Q 042116           41 GLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF--------TLIRGTRGYMAP  112 (208)
Q Consensus        41 ~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~--------~~~~g~~~y~aP  112 (208)
                      ...-+.+++.|+.|+|..  .++||++|.|++|.++.++..|++.|+++...........        ........|.||
T Consensus       101 ~f~nl~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~ap  178 (700)
T KOG2137|consen  101 GFANLGNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAP  178 (700)
T ss_pred             hhhhhhcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccc
Confidence            344466777999999986  4899999999999999999999999998765443221111        111245579999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRN  142 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p  142 (208)
                      |++....-+.++|+||+|+++|.+..|..+
T Consensus       179 E~~~~~~~~~~sd~fSlG~li~~i~~~gk~  208 (700)
T KOG2137|consen  179 EYLLGTTNTPASDVFSLGVLIYTIYNGGKS  208 (700)
T ss_pred             hhhccccccccccceeeeeEEEEEecCCcc
Confidence            999887778999999999999999854444

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.31  E-value=2.6e-06  Score=68.62  Aligned_cols=78  Identities=14%  Similarity=0.038  Sum_probs=59.8

Q ss_pred             cccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-------CCcEEE
Q 042116           11 GERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-------FWTAKI   83 (208)
Q Consensus        11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-------~~~~kl   83 (208)
                      .-..+++..+..++.++.........+......++.+++..+.-||..   ||+|+|+++.|||++.       +..+.+
T Consensus       110 s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~~L  186 (268)
T PRK15123        110 SFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREEDLKLSV  186 (268)
T ss_pred             eEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCCceEEE
Confidence            335566666655676666543334555666778999999999999999   9999999999999975       467899


Q ss_pred             EecCCcee
Q 042116           84 SDFGLAKL   91 (208)
Q Consensus        84 ~dfg~~~~   91 (208)
                      +||+.++.
T Consensus       187 IDl~r~~~  194 (268)
T PRK15123        187 IDLHRAQI  194 (268)
T ss_pred             EECCcccc
Confidence            99998753

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.28  E-value=4e-06  Score=64.39  Aligned_cols=53  Identities=13%  Similarity=0.001  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHH-HhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           36 KESNLGLLLILPQPSCNVYL-HNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~yl-H~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ++......+..+++.++..+ |+.   +++|+||++.||++.. +.+.++|||.+...
T Consensus       121 ~~~~~~~~i~~~i~~~l~~l~H~~---glVHGDLs~~NIL~~~-~~v~iIDF~qav~~  174 (197)
T cd05146         121 LNDEEMKNAYYQVLSMMKQLYKEC---NLVHADLSEYNMLWHD-GKVWFIDVSQSVEP  174 (197)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEC-CcEEEEECCCceeC
Confidence            34445567789999999988 777   9999999999999974 57999999988654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=1.9e-06  Score=74.53  Aligned_cols=108  Identities=24%  Similarity=0.276  Sum_probs=86.7

Q ss_pred             cCCCHHHHHHHHHHHHH----HHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecCCCCCceee----eee
Q 042116           34 KEKESNLGLLLILPQPS----CNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFT----LIR  104 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~----~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~----~~~  104 (208)
                      .-++....+....+..+    ||..+|+.   .++|-|+||.||+...+ ..+++.|||+...+.........    ...
T Consensus       213 ~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~  289 (524)
T KOG0601|consen  213 NFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPE  289 (524)
T ss_pred             ccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCC
Confidence            34666677777888888    99999998   99999999999999999 78899999998877654422211    113


Q ss_pred             cCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          105 GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       105 g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      |...|++||...+. ++...|+|++|.++.+..++......
T Consensus       290 ~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~  329 (524)
T KOG0601|consen  290 GDCIYAAKELLNGL-ATFASDIFSLGEVILEAILGSHLPSV  329 (524)
T ss_pred             CCceEeChhhhccc-cchHhhhcchhhhhHhhHhhcccccC
Confidence            67789999988754 67889999999999999998876543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=3.9e-07  Score=78.75  Aligned_cols=104  Identities=23%  Similarity=0.302  Sum_probs=79.3

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecCCCCCceeeeeecCCCc-
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTLIRGTRGY-  109 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y-  109 (208)
                      -...++...++++..|++.++.++|+.   .++|+|++|+||++..+ +..++.||+.+..+.-...   .....+..| 
T Consensus       359 ~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~r~~p  432 (524)
T KOG0601|consen  359 TSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSSG---VFHHIDRLYP  432 (524)
T ss_pred             HHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhccccccccccceecc---cccccccccc
Confidence            334567777889999999999999998   99999999999999886 7788999998864211111   011123334 


Q ss_pred             CchhhhhcCCCCccccchhHHHHHHHHHhcCc
Q 042116          110 MAPEWSKNTPISMKANVFNYGVVLLEIVCCRR  141 (208)
Q Consensus       110 ~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~  141 (208)
                      .++.......+..++|++|||..+.+.+++..
T Consensus       433 ~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~  464 (524)
T KOG0601|consen  433 IAEILLEDYPHLSKADIFSLGLSVDEAITGSP  464 (524)
T ss_pred             cchhhccccccccccccccccccccccccCcc
Confidence            35666677778899999999999999988874

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.15  E-value=8.2e-06  Score=63.22  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC---cEEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~dfg~~~   90 (208)
                      ..+...+...+..+......  .+......++.+++..++-||..   ||+|+|+++.|||++.+.   .+.++||+.++
T Consensus        95 ite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~  169 (206)
T PF06293_consen   95 ITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMR  169 (206)
T ss_pred             EEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhce
Confidence            34555555566666654333  55566678999999999999999   999999999999998886   78899998876


Q ss_pred             ec
Q 042116           91 LL   92 (208)
Q Consensus        91 ~~   92 (208)
                      ..
T Consensus       170 ~~  171 (206)
T PF06293_consen  170 FR  171 (206)
T ss_pred             eC
Confidence            53

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.12  E-value=4.5e-06  Score=62.03  Aligned_cols=48  Identities=21%  Similarity=0.135  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHhCC--CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           43 LLILPQPSCNVYLHNEC--EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        43 ~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .++.+++++|+.||+..  ..+++|+|++|.||+++ ++.++++||+.+..
T Consensus        87 ~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          87 ENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            46788999999999973  22369999999999999 56799999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.10  E-value=1.4e-05  Score=68.95  Aligned_cols=74  Identities=16%  Similarity=0.045  Sum_probs=51.4

Q ss_pred             ccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHH-HHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           12 ERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPS-CNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~-~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ....||..+........ .... ..+   ..+++..++. .+..+|..   |++|+|++|.||+++.++.++++|||++.
T Consensus       234 vLvmE~i~G~~L~~~~~-~~~~-~~~---~~~ia~~~~~~~l~ql~~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~  305 (437)
T TIGR01982       234 VLTMEWIDGIPLSDIAA-LDEA-GLD---RKALAENLARSFLNQVLRD---GFFHADLHPGNIFVLKDGKIIALDFGIVG  305 (437)
T ss_pred             eEEEEeECCcccccHHH-HHhc-CCC---HHHHHHHHHHHHHHHHHhC---CceeCCCCcccEEECCCCcEEEEeCCCee
Confidence            34566666555443222 1111 112   2356666665 46778887   99999999999999999999999999997


Q ss_pred             ecC
Q 042116           91 LLM   93 (208)
Q Consensus        91 ~~~   93 (208)
                      .+.
T Consensus       306 ~l~  308 (437)
T TIGR01982       306 RLS  308 (437)
T ss_pred             ECC
Confidence            764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.04  E-value=1.2e-05  Score=70.94  Aligned_cols=93  Identities=12%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCC
Q 042116           42 LLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS  121 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  121 (208)
                      .-.+.||+.||.|||..|  +++|++|.-..|+++..|..||++|.++.....-.. .......-..|..|+......  
T Consensus       107 ~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~-~~~~~~~~~s~~~P~~~~~s~--  181 (690)
T KOG1243|consen  107 CLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA-PAKSLYLIESFDDPEEIDPSE--  181 (690)
T ss_pred             HHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc-ccccchhhhcccChhhcCccc--
Confidence            356899999999999876  899999999999999999999999987654322111 011111222355565442221  


Q ss_pred             ccccchhHHHHHHHHHhc
Q 042116          122 MKANVFNYGVVLLEIVCC  139 (208)
Q Consensus       122 ~~~Di~s~Gv~l~el~tg  139 (208)
                      -..|.|-||+++++++.|
T Consensus       182 ~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  182 WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             cchhhhhHHHHHHHHhCc
Confidence            346999999999999999

>PRK09902 hypothetical protein; Provisional

Probab=97.77  E-value=0.0001  Score=57.10  Aligned_cols=67  Identities=7%  Similarity=-0.047  Sum_probs=54.3

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc--EEEEecCCcee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT--AKISDFGLAKL   91 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--~kl~dfg~~~~   91 (208)
                      .++..+.........+...+..++.+++..++-||+.   ++.|+|+.+.||+++.++.  ++++||--++.
T Consensus       111 ~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        111 ISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             ccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            4555555444455667777889999999999999999   9999999999999986666  88999976654

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.75  E-value=5.8e-05  Score=57.11  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           42 LLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..++..+-.-+.-||..   +|+|+||.++||++.... +.++|||++..
T Consensus        95 ~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          95 PDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             hHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            35677777788889999   999999999999998775 88999999864

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.70  E-value=0.00027  Score=53.59  Aligned_cols=48  Identities=29%  Similarity=0.306  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCceec
Q 042116           42 LLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAKLL   92 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~~~   92 (208)
                      ...+..|-+.+.-||..   +|+|+||..+||++..++.   +-++|||++...
T Consensus       116 ~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  116 AELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             HHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            56788888889999999   9999999999999965544   478999998653

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.55  E-value=0.00032  Score=53.61  Aligned_cols=48  Identities=31%  Similarity=0.284  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHH-HHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           41 GLLLILPQPSCNVY-LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        41 ~~~i~~~i~~~l~y-lH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ...++.+++..+.. +|..   ||+|+||++.||+++.+ .+.++|||.+...
T Consensus       108 ~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen  108 PKELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             HHHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc-eEEEEecCcceec
Confidence            34567777775555 5677   99999999999999988 8999999988664

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.32  E-value=0.00039  Score=61.31  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             CeEEeCCCCCcEEEcCCC----cEEEEecCCceecCC
Q 042116           62 PIIHCDIKPHNILMDEFW----TAKISDFGLAKLLMP   94 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~----~~kl~dfg~~~~~~~   94 (208)
                      |++|+|++|.||+++.++    .++++|||....+..
T Consensus       280 GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        280 GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             CeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            999999999999999887    899999999987643

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.86  E-value=0.0041  Score=47.85  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             CCeEEeCCCCCcEEEcC--CCcEEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDE--FWTAKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~--~~~~kl~dfg~~~~   91 (208)
                      ..++|+|+.+.||+++.  ++.+.++||+.+..
T Consensus       174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             cEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence            46799999999999988  56688999987653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=96.84  E-value=0.0022  Score=50.13  Aligned_cols=43  Identities=23%  Similarity=0.169  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           44 LILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        44 i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ++..+++++.-+|+.   |+.|+|..|.|++++.++ ++++||+..+
T Consensus       140 ~~~ki~~~ikqlH~~---G~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  140 LAEKIVEAIKQLHKH---GFYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             HHHHHHHHHHHHHHc---CCccCCCCcCcEEEECCc-EEEEECcccc
Confidence            456677889999999   999999999999998664 8999997654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=96.82  E-value=0.0045  Score=53.87  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=69.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ...+++..+.++.|+..||.++|+.   |+.-+-|.+.+|+++.+.+++|+..|.......+..             +  
T Consensus       388 ~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~~-------------~--  449 (655)
T KOG3741|consen  388 LKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDPT-------------E--  449 (655)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeecCCCC-------------c--
Confidence            4567788999999999999999999   999999999999999998899887776655433321             1  


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRN  142 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p  142 (208)
                      .+..   -.+-|.-.||.+++.+.||...
T Consensus       450 ~le~---~Qq~D~~~lG~ll~aLAt~~~n  475 (655)
T KOG3741|consen  450 PLES---QQQNDLRDLGLLLLALATGTEN  475 (655)
T ss_pred             chhH---HhhhhHHHHHHHHHHHhhcccc
Confidence            1111   1456888999999999999654

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.81  E-value=0.0052  Score=46.94  Aligned_cols=58  Identities=14%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ...+|..+.+||.+++..+.++++.....+.-.|++++|+.++.++.+|++|......
T Consensus        54 ~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   54 LQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcch
Confidence            4578999999999999999999985444688899999999999999999999876644

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.34  E-value=0.0052  Score=51.55  Aligned_cols=56  Identities=27%  Similarity=0.286  Sum_probs=45.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      +...+.+.+.++++.+.-+.-+-..  -++-||++...||+++ +|.+.|+||.+++..
T Consensus       316 k~~~~~e~lsff~s~~sil~~lekk--f~fehrnlt~~niLId-~GnvtLIDfklsRl~  371 (488)
T COG5072         316 KADRSEEELSFFWSCISILDILEKK--FPFEHRNLTLDNILID-EGNVTLIDFKLSRLS  371 (488)
T ss_pred             ecccHHHHHHHHHHHHHHHhhhhhc--CCcccccccccceeee-cCceEEEEeeeeecc
Confidence            3456778888888777666555543  3788999999999999 899999999999854

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=95.76  E-value=0.018  Score=46.37  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=26.8

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      |++|+|+++-||+++.+|.+.++||--+.
T Consensus       222 GiVHGDlSefNIlV~~dg~~~vIDwPQ~v  250 (304)
T COG0478         222 GIVHGDLSEFNILVTEDGDIVVIDWPQAV  250 (304)
T ss_pred             CccccCCchheEEEecCCCEEEEeCcccc
Confidence            99999999999999999999999996553

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=95.07  E-value=0.024  Score=44.56  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ++.++|+|+.+.|++++.+....|+||+.+..
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            34699999999999998776667999997643

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.06  E-value=0.047  Score=44.74  Aligned_cols=31  Identities=32%  Similarity=0.440  Sum_probs=27.3

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      +.+++|+|+.+.|++++.++...++||+.+.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            4589999999999999988777899998764

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK05231 homoserine kinase; Provisional

Probab=95.06  E-value=0.055  Score=44.45  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=27.2

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.+++|+|+.+.||+++.+....++||+.+..
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            45899999999999999776668999988753

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=94.92  E-value=0.066  Score=42.67  Aligned_cols=50  Identities=22%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           40 LGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        40 ~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ....+..++++.+.-|-..+  +++|+||+.=|||+. ++.+.++||+-+...
T Consensus       167 e~~~~~~~~v~~~~~l~~~a--~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~  216 (268)
T COG1718         167 EAEGLYEDVVEYMRRLYKEA--GLVHGDLSEYNILVH-DGEPYIIDVSQAVTI  216 (268)
T ss_pred             hHHHHHHHHHHHHHHHHHhc--CcccccchhhheEEE-CCeEEEEECcccccc
Confidence            45567777777776666522  999999999999999 778999999987654

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=94.86  E-value=0.091  Score=42.81  Aligned_cols=32  Identities=25%  Similarity=0.261  Sum_probs=27.3

Q ss_pred             CCCCeEEeCCCCCcEEEcCC----CcEEEEecCCce
Q 042116           59 CEAPIIHCDIKPHNILMDEF----WTAKISDFGLAK   90 (208)
Q Consensus        59 ~~~~iiHrdlk~~nill~~~----~~~kl~dfg~~~   90 (208)
                      .+..++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            35578999999999999874    789999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=94.57  E-value=0.0049  Score=60.03  Aligned_cols=127  Identities=11%  Similarity=0.031  Sum_probs=82.9

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHH-HHHHHHHHhCCCC--CeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQ-PSCNVYLHNECEA--PIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i-~~~l~ylH~~~~~--~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      +++..|..|.-+.+-.+......+.-+....++ ..+..-+|+....  --+|+++|+-|.++..+..+++.++|+.+..
T Consensus      1311 ~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIk 1390 (2724)
T KOG1826|consen 1311 LYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIK 1390 (2724)
T ss_pred             HHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCccccccccccccc
Confidence            344455555555543333222223233333333 5555556654322  2589999999999999999999999999843


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNM  143 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~  143 (208)
                      .+... ......+++.|+.|+....-.++.++|+|+.|+-+|..-.|..+|
T Consensus      1391 np~~s-f~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1391 NPVLS-FFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             CchHh-hhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence            32222 223344677888888887777888899999999999887776554

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=94.39  E-value=0.055  Score=41.67  Aligned_cols=32  Identities=38%  Similarity=0.423  Sum_probs=22.0

Q ss_pred             CCCeEEeCCCCCcEEEc-CCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMD-EFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~   91 (208)
                      +..++|+|+.+.||+++ .++.+.++||+.+..
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccceE
Confidence            45799999999999999 566668999987644

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=94.09  E-value=0.047  Score=43.01  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=26.8

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      .+.++|+|+.|.||+++.+....|+||+.+.
T Consensus       162 ~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             ceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            3469999999999999998778899998764

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=93.71  E-value=0.19  Score=41.02  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=25.4

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ..+++|+|+.+.||+++. +.+.++||+.+.
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            358999999999999987 567899998654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=93.69  E-value=0.2  Score=41.78  Aligned_cols=28  Identities=39%  Similarity=0.576  Sum_probs=25.2

Q ss_pred             eEEeCCCCCcEEEcCCCc-EEEEecCCce
Q 042116           63 IIHCDIKPHNILMDEFWT-AKISDFGLAK   90 (208)
Q Consensus        63 iiHrdlk~~nill~~~~~-~kl~dfg~~~   90 (208)
                      +||+|+.|.||+++.+.. ..++||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            999999999999998875 8899999764

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=93.59  E-value=0.052  Score=44.04  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=27.3

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.+++|+|+.|.|++++.+....|+||..+..
T Consensus       174 ~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CCcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            34799999999999999887778999987643

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=93.55  E-value=0.068  Score=41.78  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             CCCeEEeCCCCCcEEEcC-CCcEEEEecCCce
Q 042116           60 EAPIIHCDIKPHNILMDE-FWTAKISDFGLAK   90 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~   90 (208)
                      +..++|+|+.+.||+++. ++.+.++||..+.
T Consensus       169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            347999999999999997 5779999997664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=93.38  E-value=0.092  Score=41.41  Aligned_cols=39  Identities=28%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             HHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCC
Q 042116           49 PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL   88 (208)
Q Consensus        49 ~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~   88 (208)
                      ..+|.-.|+. ..+.+|+|..|+||+-+..|.+|+.|=+.
T Consensus       151 i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  151 IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhh
Confidence            3667778965 45899999999999999999999998653

The function of this family is unknown.

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=93.24  E-value=0.091  Score=41.28  Aligned_cols=29  Identities=17%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             CCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           61 APIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      +.++|+|+.|.||+++.++ +.++||+.+.
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            4678999999999999887 9999998764

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=93.16  E-value=0.036  Score=49.66  Aligned_cols=93  Identities=20%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCC
Q 042116           42 LLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS  121 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  121 (208)
                      ..+.+.-+++++|+|+.   .=+|||    ||+... ...+..+|+....+....  ......+++.+++||......+.
T Consensus       339 ~~~~r~et~~l~~l~~~---~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~--~~~t~~~~~~~~~pev~~~~~~~  408 (829)
T KOG0576|consen  339 AYPLRKETRPLAELHSS---YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTM--KPRTAIGTPEPLAPEVIQENTID  408 (829)
T ss_pred             hhhhhhhcccccccccc---cccCcc----cccccc-cccccccccCCcccCccc--ccccCCCCCCCCCchhhcccccc
Confidence            34566667889999986   447887    777655 567889999887664433  23344589999999999999999


Q ss_pred             ccccchhHHHHHHHHHhcCcCCC
Q 042116          122 MKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       122 ~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ...|.|+.++--.++--|-.|-.
T Consensus       409 ~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  409 GCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             cCCCccCCCcchhhcCCCCCCCC
Confidence            99999999987667766665543

>TIGR02721 ycfN_thiK thiamine kinase

Probab=92.84  E-value=0.093  Score=41.75  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             CCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..++|+|+.|.||+++.++ +.++||..+..
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            4689999999999999876 78999987644

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=92.67  E-value=0.5  Score=41.78  Aligned_cols=33  Identities=33%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      |++|.|..|.||++..++.+-+.|||....+.+
T Consensus       285 gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         285 GFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             CccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            899999999999999999999999999877643

>PRK10271 thiK thiamine kinase; Provisional

Probab=92.15  E-value=0.15  Score=38.94  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..+|+|+.|.|++++.++ ++++||+.+..
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            468999999999998776 88999998754

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=91.76  E-value=0.16  Score=41.15  Aligned_cols=31  Identities=32%  Similarity=0.506  Sum_probs=25.5

Q ss_pred             CCeEEeCCCCCcEEEcCCCc-EEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDEFWT-AKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~~~~-~kl~dfg~~~~   91 (208)
                      +.++|+|+++.||+++.++. ..|+||+.+..
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            46899999999999987454 57999988754

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=91.13  E-value=0.2  Score=38.65  Aligned_cols=30  Identities=33%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             CeEEeCCCCCcEEE-cCCCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILM-DEFWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill-~~~~~~kl~dfg~~~~   91 (208)
                      .+.|.|+.+.||++ ..++.++++||..+..
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            57899999999999 8888999999987754

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PRK06148 hypothetical protein; Provisional

Probab=91.12  E-value=0.59  Score=44.84  Aligned_cols=32  Identities=38%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             CCCeEEeCCCCCcEEEcCCC--c-EEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFW--T-AKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~--~-~kl~dfg~~~~   91 (208)
                      +.++||.|+++.||+++.+.  . .-|+|||-+..
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            55899999999999998774  3 45999997743

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=90.86  E-value=0.49  Score=38.79  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.+++|+|+.+.|++++.++...++||..+..
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            44799999999999999988899999987754

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=90.48  E-value=0.18  Score=42.21  Aligned_cols=34  Identities=29%  Similarity=0.620  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHH--hC-CCCCeEEeCCCCCcEEEcC
Q 042116           42 LLLILPQPSCNVYLH--NE-CEAPIIHCDIKPHNILMDE   77 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH--~~-~~~~iiHrdlk~~nill~~   77 (208)
                      ..+..|+|  |.|+-  +. |...++|-||||.|||+-.
T Consensus       278 kfifLQia--LLyikIYelp~c~nF~H~DLKPdNILiFd  314 (434)
T PF05445_consen  278 KFIFLQIA--LLYIKIYELPCCTNFLHVDLKPDNILIFD  314 (434)
T ss_pred             HHHHHHHH--HHHeeeecCCCcceeeecccCcCcEEEec
Confidence            34566664  45522  22 3347899999999999943

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=90.38  E-value=1.3  Score=39.39  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             ccccceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC----CCcEEEEe
Q 042116           10 EGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE----FWTAKISD   85 (208)
Q Consensus        10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~----~~~~kl~d   85 (208)
                      .....-||+.|....+-.  ......++..   .++..+.++  |++.....|++|.|-.|.||++..    ++.+.+.|
T Consensus       276 ~RVLtME~~~G~~i~Dl~--~i~~~gi~~~---~i~~~l~~~--~~~qIf~~GffHaDPHPGNilv~~~~~~~~~ivllD  348 (538)
T KOG1235|consen  276 KRVLTMEYVDGIKINDLD--AIDKRGISPH---DILNKLVEA--YLEQIFKTGFFHADPHPGNILVRPNPEGDEEIVLLD  348 (538)
T ss_pred             ceEEEEEecCCccCCCHH--HHHHcCCCHH---HHHHHHHHH--HHHHHHhcCCccCCCCCCcEEEecCCCCCccEEEEc
Confidence            344556777776644321  1122233333   333333333  222222238999999999999984    66789999


Q ss_pred             cCCceecC
Q 042116           86 FGLAKLLM   93 (208)
Q Consensus        86 fg~~~~~~   93 (208)
                      ||+...+.
T Consensus       349 hGl~~~is  356 (538)
T KOG1235|consen  349 HGLYAVIS  356 (538)
T ss_pred             cccccccc
Confidence            99987654

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=89.88  E-value=0.35  Score=36.96  Aligned_cols=30  Identities=23%  Similarity=0.281  Sum_probs=24.5

Q ss_pred             CeEEeCCCCCcEEEcCCC-----cEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDEFW-----TAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~-----~~kl~dfg~~~~   91 (208)
                      .++|+|+.+.|+++..+.     .+.++||..+..
T Consensus       121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~  155 (196)
T smart00587      121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHY  155 (196)
T ss_pred             EEeeCCCCccceeeccCCCCCccceEEEecccCCc
Confidence            689999999999997543     578999987643

subfamily of choline kinases

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=89.86  E-value=0.39  Score=39.80  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ++.++|+|+.+.|++++...-.-|.||+.+..-
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEeccccccC
Confidence            357999999999999999888999999988653

>PLN02236 choline kinase

Probab=89.12  E-value=0.39  Score=40.18  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=26.0

Q ss_pred             CCeEEeCCCCCcEEEcC-CCcEEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDE-FWTAKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~   91 (208)
                      ..++|+|+++.||+++. ++.+.++||..+..
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence            36899999999999976 46799999987653

>PRK11768 serine/threonine protein kinase; Provisional

Probab=89.02  E-value=0.93  Score=37.57  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.+++|+|+.+.||+++ + ...++||+-+..
T Consensus       195 ~~~liHgD~h~~NvL~~-d-~~~iIDFDd~~~  224 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR-D-GPHFVDLDDARM  224 (325)
T ss_pred             CccceecCCCchhcccc-C-CcEEEeCCCCCC
Confidence            44789999999999995 4 578999987753

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=88.73  E-value=1.2  Score=36.05  Aligned_cols=30  Identities=27%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      -++|.|+.|.|++.+..+.+.|+||--|..
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~  183 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAGL  183 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCCC
Confidence            489999999999999989999999977643

>PRK06149 hypothetical protein; Provisional

Probab=88.57  E-value=0.83  Score=43.68  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=25.2

Q ss_pred             CCCeEEeCCCCCcEEEcCCC--c---EEEEecCCce
Q 042116           60 EAPIIHCDIKPHNILMDEFW--T---AKISDFGLAK   90 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~--~---~kl~dfg~~~   90 (208)
                      +.++||.|+++.||+++.+.  .   ..|+|||-+.
T Consensus       207 ~~g~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~  242 (972)
T PRK06149        207 PLQAVHLDITDDNVVGSRDADGRWQPDGVIDFGDLV  242 (972)
T ss_pred             cccccCCCCCcccEEEcCCCCCCcceeEEEEcccch
Confidence            45899999999999998652  2   4789999764

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=88.02  E-value=1.1  Score=43.16  Aligned_cols=104  Identities=17%  Similarity=0.061  Sum_probs=66.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCC---cEEEcCCCcEEEE--ecCCceecCCCCCceeeeeecCCC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPH---NILMDEFWTAKIS--DFGLAKLLMPDQTRTFTLIRGTRG  108 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~---nill~~~~~~kl~--dfg~~~~~~~~~~~~~~~~~g~~~  108 (208)
                      ..++....+.+..+...||.|+|+.   ...|.-+..+   +-..+..+.....  ||+..+.........  .......
T Consensus       281 ~~i~~~~~r~~~~~~~~GL~~~h~~---~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~--~~~~~~~  355 (1351)
T KOG1035|consen  281 GSIPLETLRILHQKLLEGLAYLHSL---SLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSF--SDLLAEI  355 (1351)
T ss_pred             cccCHHHHHHHHHHHhhhHHHHHHh---ccceeEEecccccccccCccceeecchhhhcccccCCCcccch--hhcCccc
Confidence            4667777788899999999999997   4445444443   3333445555555  777766553322211  1113445


Q ss_pred             cCchhhhhcCCCC--ccccchhHHHHHHHHHhcCcC
Q 042116          109 YMAPEWSKNTPIS--MKANVFNYGVVLLEIVCCRRN  142 (208)
Q Consensus       109 y~aPE~~~~~~~~--~~~Di~s~Gv~l~el~tg~~p  142 (208)
                      +.++|......+.  ...|+|.+|.....+..|..+
T Consensus       356 ~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i  391 (1351)
T KOG1035|consen  356 RNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDI  391 (1351)
T ss_pred             cccccccccccchhhhhhHHHHHHHHHhhhhhcCcc
Confidence            6677766655443  447999999999999888754

>PHA03111 Ser/Thr kinase; Provisional

Probab=87.56  E-value=2.2  Score=35.85  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHH-HhCCCCCeEEeCCCCCcEEEcCC
Q 042116           41 GLLLILPQPSCNVYL-HNECEAPIIHCDIKPHNILMDEF   78 (208)
Q Consensus        41 ~~~i~~~i~~~l~yl-H~~~~~~iiHrdlk~~nill~~~   78 (208)
                      ...+..|++.-.-.+ --.|...++|-||||.|||+-.+
T Consensus       281 ikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds  319 (444)
T PHA03111        281 IKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDS  319 (444)
T ss_pred             HHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecC
Confidence            345677776544333 22334479999999999999443

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=86.66  E-value=1.5  Score=37.62  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ...++|+|+.+.||++..+ .++++||-++.
T Consensus       222 ~~~l~HgDl~~gni~~~~~-~~~viD~E~a~  251 (401)
T PRK09550        222 AEALLHGDLHTGSIFVTEE-ETKVIDPEFAF  251 (401)
T ss_pred             CCceeeccCCcccEEeeCC-CcEEEeccccc
Confidence            3479999999999999776 58999987664

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=83.82  E-value=1.1  Score=37.22  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=25.3

Q ss_pred             CeEEeCCCCCcEEEcC-CCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDE-FWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~-~~~~kl~dfg~~~~   91 (208)
                      .+.|.|+.+.||+++. ++.++++||..|..
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence            4789999999999974 56899999987743

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=83.47  E-value=2.5  Score=35.58  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             HHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           52 NVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        52 l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      +.-|-.+   |+||+|.+--||++..+..++++||--..
T Consensus       215 Iv~la~~---GlIHgDFNEFNimv~dd~~i~vIDFPQmv  250 (465)
T KOG2268|consen  215 IVRLANH---GLIHGDFNEFNIMVKDDDKIVVIDFPQMV  250 (465)
T ss_pred             HHHHHHc---CceecccchheeEEecCCCEEEeechHhh
Confidence            3445555   99999999999999999999999996543

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=82.53  E-value=8.9  Score=29.52  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=24.8

Q ss_pred             HHHHHhCCCCCeEEeCCCCCcEEEcCCC----cEEEEe-cCC
Q 042116           52 NVYLHNECEAPIIHCDIKPHNILMDEFW----TAKISD-FGL   88 (208)
Q Consensus        52 l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~d-fg~   88 (208)
                      ..||-..   .|+.+|++|.||++....    .+.|+| ||.
T Consensus       131 ~~~l~~~---~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~  169 (199)
T PF10707_consen  131 KRYLLDH---HIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGE  169 (199)
T ss_pred             HHHHHHc---CCeecCCCcccEEEEecCCCceEEEEEeCCCC
Confidence            3667676   899999999999995432    466776 443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK10593 hypothetical protein; Provisional

Probab=81.11  E-value=5.1  Score=32.76  Aligned_cols=35  Identities=11%  Similarity=0.121  Sum_probs=24.2

Q ss_pred             HHHHhC-CCCCeEEeCCCCCcEEEcCC-Cc-EEEEecC
Q 042116           53 VYLHNE-CEAPIIHCDIKPHNILMDEF-WT-AKISDFG   87 (208)
Q Consensus        53 ~ylH~~-~~~~iiHrdlk~~nill~~~-~~-~kl~dfg   87 (208)
                      .+|+.. ..+.++|+|+.+.||+++.+ +. +.+.|..
T Consensus       184 ~~L~~~~~~psLlHGDlw~gNvl~~~~~~~i~~liDPa  221 (297)
T PRK10593        184 ALFEGFNDNCVLVHGNFTLRSMLKDPRSDQLLAMLNPG  221 (297)
T ss_pred             hhhccCCCCCeeEeCCCCcccEEECCCCCceEEEECch
Confidence            444442 24679999999999999864 33 5566654

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=80.44  E-value=3  Score=32.36  Aligned_cols=40  Identities=28%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCc
Q 042116           42 LLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA   89 (208)
Q Consensus        42 ~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~   89 (208)
                      .+-+.++.+-+..+|..   +|+-+|+++.|..     .-+|+|||.+
T Consensus       167 ~~~~~~~~~dl~~~~k~---gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  167 IRDIPQMLRDLKILHKL---GIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             hhHHHHHHHHHHHHHHC---CeeeccCcccccc-----CCEEEecccC
Confidence            45577788888999998   9999999999987     2388999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		6e-18
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-17
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-14
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-13
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-12
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-12
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-11
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-11
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-10
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-10
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-09
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		4e-09
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		4e-09
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		4e-09
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		4e-09
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-09
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-09
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		6e-09
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		9e-09
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		9e-09
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		9e-09
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		1e-08
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		1e-08
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-08
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-08
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		1e-08
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-08
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-08
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		2e-08
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		3e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		4e-08
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		5e-08
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		5e-08
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		5e-08
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		5e-08
3a7f_A	303	Human Mst3 Kinase Length = 303		5e-08
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-08
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		6e-08
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		7e-08
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		9e-08
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		9e-08
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		9e-08
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		9e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-07
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-07
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-07
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-07
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-07
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-07
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-07
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		1e-07
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		1e-07
3g51_A	325	Structural Diversity Of The Active Conformation Of		1e-07
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-07
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-07
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		2e-07
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-07
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-07
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-07
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-07
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-07
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-07
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-07
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		2e-07
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-07
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		3e-07
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		3e-07
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-07
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		3e-07
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		3e-07
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-07
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-07
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		3e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		3e-07
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-07
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		3e-07
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-07
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-07
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-07
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		3e-07
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		3e-07
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-07
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-07
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		4e-07
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		4e-07
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		4e-07
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		4e-07
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		4e-07
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-07
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		4e-07
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		4e-07
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		4e-07
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		4e-07
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		4e-07
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		4e-07
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		4e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-07
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		5e-07
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		5e-07
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		5e-07
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		5e-07
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		5e-07
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		5e-07
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		5e-07
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		5e-07
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		5e-07
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		5e-07
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-07
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		5e-07
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-07
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		5e-07
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		5e-07
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		5e-07
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		6e-07
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		6e-07
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		6e-07
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		6e-07
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		7e-07
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		8e-07
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		8e-07
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		9e-07
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		9e-07
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		9e-07
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		1e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-06
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		1e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-06
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		2e-06
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-06
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		2e-06
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-06
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-06
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		2e-06
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		2e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		2e-06
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-06
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-06
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-06
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		2e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-06
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-06
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		2e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-06
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-06
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		3e-06
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		3e-06
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		3e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-06
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		3e-06
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		3e-06
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		3e-06
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		4e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-06
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		4e-06
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		4e-06
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		4e-06
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		4e-06
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		4e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		4e-06
2pl0_A	289	Lck Bound To Imatinib Length = 289		4e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		4e-06
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		4e-06
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-06
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		4e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		4e-06
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		4e-06
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-06
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-06
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		4e-06
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		4e-06
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		4e-06
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-06
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-06
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-06
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		4e-06
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		4e-06
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		4e-06
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		5e-06
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-06
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		5e-06
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		5e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		6e-06
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		7e-06
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		7e-06
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		7e-06
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		7e-06
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		8e-06
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		8e-06
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		8e-06
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		8e-06
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		8e-06
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		8e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		8e-06
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		8e-06
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		8e-06
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		9e-06
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		9e-06
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		9e-06
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		9e-06
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		9e-06
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		9e-06
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		9e-06
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		9e-06
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-05
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		1e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-05
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		1e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-05
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		1e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-05
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		1e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		1e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-05
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		1e-05
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		1e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		1e-05
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		1e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-05
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		2e-05
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-05
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		2e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		2e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		2e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-05
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		2e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		2e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-05
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		2e-05
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-05
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		2e-05
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		2e-05
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		3e-05
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		3e-05
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		3e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		3e-05
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-05
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		3e-05
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		3e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		3e-05
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		3e-05
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		3e-05
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-05
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-05
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-05
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		3e-05
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		3e-05
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		3e-05
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		3e-05
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-05
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-05
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		3e-05
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		3e-05
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		3e-05
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		3e-05
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		3e-05
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-05
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		3e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		3e-05
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		3e-05
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		3e-05
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		3e-05
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		3e-05
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		4e-05
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		4e-05
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		4e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		4e-05
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		4e-05
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-05
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		4e-05
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		4e-05
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		4e-05
4fl3_A	635	Structural And Biophysical Characterization Of The		4e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		4e-05
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		4e-05
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		4e-05
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		4e-05
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		4e-05
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-05
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		4e-05
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		4e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		4e-05
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		4e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		4e-05
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		4e-05
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		4e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		4e-05
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		4e-05
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		4e-05
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		4e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		4e-05
4alu_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		4e-05
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		4e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		4e-05
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		4e-05
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		5e-05
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		5e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-05
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		5e-05
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		5e-05
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		5e-05
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		5e-05
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		5e-05
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		5e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		6e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		6e-05
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		6e-05
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		6e-05
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		6e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		6e-05
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		6e-05
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		6e-05
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		6e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		6e-05
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		6e-05
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		6e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		7e-05
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		7e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		7e-05
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		7e-05
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		7e-05
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		7e-05
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		8e-05
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		8e-05
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		8e-05
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		8e-05
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		8e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		8e-05
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		8e-05
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		8e-05
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		8e-05
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		9e-05
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		9e-05
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		9e-05
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		9e-05
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		9e-05
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		9e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-05
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		9e-05
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		9e-05
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		9e-05
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		1e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		1e-04
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		1e-04
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		1e-04
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		1e-04
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		1e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		1e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		1e-04
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		1e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		1e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		1e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		1e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		1e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		1e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		1e-04
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-04
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		1e-04
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		1e-04
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		1e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		1e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		1e-04
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		1e-04
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		1e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		1e-04
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		1e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		1e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		1e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		1e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		1e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		1e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		1e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		1e-04
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		1e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		1e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		1e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		2e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		2e-04
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		2e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-04
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		2e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-04
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		2e-04
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-04
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-04
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		2e-04
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		2e-04
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		2e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-04
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		2e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-04
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		2e-04
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-04
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-04
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-04
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-04
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-04
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-04
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		2e-04
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-04
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		2e-04
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		2e-04
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-04
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		2e-04
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-04
3kk8_A	284	Camkii Substrate Complex A Length = 284		2e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-04
3kk9_A	282	Camkii Substrate Complex B Length = 282		2e-04
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		2e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		2e-04
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		2e-04
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		2e-04
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-04
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-04
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		2e-04
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		2e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-04
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-04
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		2e-04
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		2e-04
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		2e-04
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-04
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-04
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-04
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		2e-04
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-04
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-04
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		2e-04
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		2e-04
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		2e-04
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-04
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		2e-04
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		2e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-04
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		3e-04
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		3e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-04
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		3e-04
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		3e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		3e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		3e-04
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		3e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-04
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		3e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		3e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		3e-04
4ae9_A	343	Structure And Function Of The Human Sperm-specific		3e-04
4ae6_A	343	Structure And Function Of The Human Sperm-specific		3e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-04
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		3e-04
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		3e-04
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		3e-04
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		3e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		3e-04
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		3e-04
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		3e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		3e-04
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		3e-04
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		3e-04
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		3e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-04
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		3e-04
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		3e-04
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		3e-04
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		3e-04
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-04
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		3e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		3e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-04
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		4e-04
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		4e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		4e-04
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		4e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		4e-04
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		4e-04
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		4e-04
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		4e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		4e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-04
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		4e-04
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		4e-04
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		4e-04
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		4e-04
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		4e-04
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		4e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-04
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		4e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		4e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		4e-04
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		4e-04
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		4e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		4e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		4e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		4e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		4e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-04
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		4e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		5e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		5e-04
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		5e-04
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		5e-04
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		5e-04
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		5e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		5e-04
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		5e-04
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		5e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		5e-04
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		5e-04
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		5e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		5e-04
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		5e-04
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		5e-04
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		5e-04
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		5e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		5e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		5e-04
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		5e-04
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		5e-04
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		5e-04
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		5e-04
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		5e-04
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		5e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		6e-04
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		6e-04
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		6e-04
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		6e-04
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		6e-04
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		6e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-04
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		6e-04
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		6e-04
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		6e-04
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		6e-04
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		6e-04
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		6e-04
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		6e-04
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		6e-04
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		6e-04
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		6e-04
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		6e-04
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		6e-04
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		6e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-04
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		6e-04
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		6e-04
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		6e-04
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-04
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		6e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		6e-04
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		6e-04
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		6e-04
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		6e-04
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		6e-04
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		6e-04
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		6e-04
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		6e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		6e-04
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		6e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		6e-04
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		7e-04
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		7e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		7e-04
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		7e-04
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		7e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-04
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		7e-04
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		7e-04
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		7e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		7e-04
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		7e-04
2oza_B	366	Structure Of P38alpha Complex Length = 366		7e-04
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		7e-04
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		7e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		7e-04
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		7e-04
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		7e-04
3hec_A	348	P38 In Complex With Imatinib Length = 348		7e-04
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		8e-04
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		8e-04
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		8e-04
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		8e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		8e-04
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		8e-04
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		8e-04
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		8e-04
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		8e-04
3soa_A	444	Full-Length Human Camkii Length = 444		8e-04
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		8e-04
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		8e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		8e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		8e-04
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		8e-04
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		8e-04
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		8e-04
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		8e-04
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		8e-04
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YLH+ C+  IIH D+K  NIL+DE + A + DFGLAKL+          +RGT G++AP
Sbjct: 153 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAP 212
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP-SKPEEIVFINLTYKCFIDREFDKL 171
           E+      S K +VF YGV+LLE++  +R  ++   +  ++++ ++       +++ + L
Sbjct: 213 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 272
Query: 172 V 172
           V
Sbjct: 273 V 273

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            YLH+ C+  IIH D+K  NIL+DE + A + DFGLAKL+          +RG  G++AP
Sbjct: 145 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAP 204
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP-SKPEEIVFINLTYKCFIDREFDKL 171
           E+      S K +VF YGV+LLE++  +R  ++   +  ++++ ++       +++ + L
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 264
Query: 172 V 172
           V
Sbjct: 265 V 265

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH      IIH D+K  NIL+DE +  KI+DFG++K     DQT    +++GT GY+ P
Sbjct: 154 YLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDP 210
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           E+     ++ K++V+++GVVL E++C R    I  S P E+V
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARS--AIVQSLPREMV 250

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH      IIH D+K  NIL+DE +  KI+DFG++K      QT    +++GT GY+ P
Sbjct: 154 YLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDP 210
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           E+     ++ K++V+++GVVL E++C R    I  S P E+V
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARS--AIVQSLPREMV 250

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           +LH   E   IH DIK  NIL+DE +TAKISDFGLA+      QT   + I GT  YMAP
Sbjct: 148 FLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAP 204
Query: 113 EWSKNTPISMKANVFNYGVVLLEIV 137
           E  +   I+ K++++++GVVLLEI+
Sbjct: 205 EALRG-EITPKSDIYSFGVVLLEII 228

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           +LH   E   IH DIK  NIL+DE +TAKISDFGLA+      QT     I GT  YMAP
Sbjct: 148 FLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAP 204
Query: 113 EWSKNTPISMKANVFNYGVVLLEIV 137
           E  +   I+ K++++++GVVLLEI+
Sbjct: 205 EALRG-EITPKSDIYSFGVVLLEII 228

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           +LH   E   IH DIK  NIL+DE +TAKISDFGLA+      Q      I GT  YMAP
Sbjct: 142 FLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAP 198
Query: 113 EWSKNTPISMKANVFNYGVVLLEIV 137
           E  +   I+ K++++++GVVLLEI+
Sbjct: 199 EALRG-EITPKSDIYSFGVVLLEII 222

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           +LH   E   IH DIK  NIL+DE +TAKISDFGLA+      Q    + I GT  Y AP
Sbjct: 139 FLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAP 195
Query: 113 EWSKNTPISMKANVFNYGVVLLEIV 137
           E  +   I+ K++++++GVVLLEI+
Sbjct: 196 EALRG-EITPKSDIYSFGVVLLEII 219

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 85/161 (52%), Gaps = 20/161 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
           YLHN    PI+H D+K  N+L+D+ +T K+ DFGL++L    +   F   +   GT  +M
Sbjct: 152 YLHNR-NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRL----KASXFLXSKXAAGTPEWM 206
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNM-EIDPSKPEEIVFINLTYKC------- 162
           APE  ++ P + K++V+++GV+L E+   ++    ++P++    V   + +KC       
Sbjct: 207 APEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ----VVAAVGFKCKRLEIPR 262
Query: 163 FIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPP 203
            ++ +   ++ G   N+        +++ +L  +   ++PP
Sbjct: 263 NLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP 303

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 86/161 (53%), Gaps = 20/161 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
           YLHN    PI+H ++K  N+L+D+ +T K+ DFGL++L    +  TF   +   GT  +M
Sbjct: 152 YLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL----KASTFLSSKSAAGTPEWM 206
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNM-EIDPSKPEEIVFINLTYKC------- 162
           APE  ++ P + K++V+++GV+L E+   ++    ++P++    V   + +KC       
Sbjct: 207 APEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ----VVAAVGFKCKRLEIPR 262
Query: 163 FIDREFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISIPP 203
            ++ +   ++ G   N+        +++ +L  +   ++PP
Sbjct: 263 NLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP 303

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YMAPE  + T  S+
Sbjct: 136 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMAPERLQGTHYSV 192
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E +F
Sbjct: 193 QSDIWSMGLSLVELAVGRYPIPPPDAKELEAIF 225

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 153 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 209
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 210 QSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 242

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H DIKP NIL+D   T KI DFG+AK L          + GT  Y +PE +K      
Sbjct: 132 IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDE 191
Query: 123 KANVFNYGVVLLEIVC 138
             ++++ G+VL E++ 
Sbjct: 192 CTDIYSIGIVLYEMLV 207

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 188 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 244
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 245 QSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 277

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 182
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 183 QSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 215

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 182
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 183 QSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 215

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 182
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 183 QSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 215

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 182
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           ++++++ G+ L+E+   R  +    +K  E++F
Sbjct: 183 QSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 215

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 21/131 (16%)
Query: 50  SCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM--------------PD 95
           S   YLH+     IIH D+  HN L+ E     ++DFGLA+L++              PD
Sbjct: 119 SGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPD 175
Query: 96  QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
           + + +T++ G   +MAPE         K +VF++G+VL EI+     +  DP      + 
Sbjct: 176 RKKRYTVV-GNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIG---RVNADPDYLPRTMD 231
Query: 156 INLTYKCFIDR 166
             L  + F+DR
Sbjct: 232 FGLNVRGFLDR 242

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP N+L+D+    +ISD GLA  L   QT+T     GT G+MAPE         
Sbjct: 310 IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDF 368
Query: 123 KANVFNYGVVLLEIVCCR 140
             + F  GV L E++  R
Sbjct: 369 SVDYFALGVTLYEMIAAR 386

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP N+L+D+    +ISD GLA  L   QT+T     GT G+MAPE         
Sbjct: 310 IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDF 368
Query: 123 KANVFNYGVVLLEIVCCR 140
             + F  GV L E++  R
Sbjct: 369 SVDYFALGVTLYEMIAAR 386

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP N+L+D+    +ISD GLA  L   QT+T     GT G+MAPE         
Sbjct: 310 IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDF 368
Query: 123 KANVFNYGVVLLEIVCCR 140
             + F  GV L E++  R
Sbjct: 369 SVDYFALGVTLYEMIAAR 386

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 145 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 201
Query: 123 KANVFNYGVVLLEIVCCR 140
           ++++++ G+ L+E+   R
Sbjct: 202 QSDIWSMGLSLVEMAVGR 219

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP N+L+D+    +ISD GLA  L   QT+T     GT G+MAPE         
Sbjct: 310 IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDF 368
Query: 123 KANVFNYGVVLLEIVCCR 140
             + F  GV L E++  R
Sbjct: 369 SVDYFALGVTLYEMIAAR 386

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 139 YLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 194
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             K +    KA++++ G+  +E+ 
Sbjct: 195 VIKQSAYDSKADIWSLGITAIELA 218

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 119 YLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 174
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             K +    KA++++ G+  +E+ 
Sbjct: 175 VIKQSAYDSKADIWSLGITAIELA 198

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE  + T  S+
Sbjct: 126 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPERLQGTHYSV 182
Query: 123 KANVFNYGVVLLEIVCCRRNM----EIDPSKPEEIVFINLTY 160
           ++++++ G+ L+E+   R  +      + S+P   +F  L Y
Sbjct: 183 QSDIWSMGLSLVEMAVGRYPIPPPDAKEDSRPPMAIFELLDY 224

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NIL+DE    K++DFGL+K  +  + + ++   GT  YMAPE       S 
Sbjct: 151 IIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFC-GTVEYMAPEVVNRQGHSH 209
Query: 123 KANVFNYGVVLLEIVC 138
            A+ ++YGV++ E++ 
Sbjct: 210 SADWWSYGVLMFEMLT 225

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL N+    IIH D+KP NIL+DE     I+DF +A +L P +T+  T + GT+ YMAPE
Sbjct: 130 YLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAML-PRETQ-ITTMAGTKPYMAPE 184
Query: 114 W---SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS-KPEEIV 154
                K    S   + ++ GV   E++  RR   I  S   +EIV
Sbjct: 185 MFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIV 229

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I+H D+KP NIL++     K+ DFG++  L+ +    F    GTR YM+PE  + T  S+
Sbjct: 129 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFV---GTRSYMSPERLQGTHYSV 185
Query: 123 KANVFNYGVVLLEIVCCR 140
           ++++++ G+ L+E+   R
Sbjct: 186 QSDIWSMGLSLVEMAVGR 203

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R  + + GT  Y++
Sbjct: 147 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV-GTAQYVS 202
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE       S  ++++  G ++ ++V 
Sbjct: 203 PELLTEKSASKSSDLWALGCIIYQLVA 229

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 135 YLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 190
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             + +    KA++++ G+  +E+ 
Sbjct: 191 VIQQSAYDSKADIWSLGITAIELA 214

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMAPEWSKNTP 119
           IIH D+KP NI++      K+ DFG+A+ +       T+T  +I GT  Y++PE ++   
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI-GTAQYLSPEQARGDS 195
Query: 120 ISMKANVFNYGVVLLEIVC 138
           +  +++V++ G VL E++ 
Sbjct: 196 VDARSDVYSLGCVLYEVLT 214

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMAPEWSKNTP 119
           IIH D+KP NI++      K+ DFG+A+ +       T+T  +I GT  Y++PE ++   
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI-GTAQYLSPEQARGDS 195
Query: 120 ISMKANVFNYGVVLLEIVC 138
           +  +++V++ G VL E++ 
Sbjct: 196 VDARSDVYSLGCVLYEVLT 214

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMAPEWSKNTP 119
           IIH D+KP NI++      K+ DFG+A+ +       T+T  +I GT  Y++PE ++   
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI-GTAQYLSPEQARGDS 195
Query: 120 ISMKANVFNYGVVLLEIVC 138
           +  +++V++ G VL E++ 
Sbjct: 196 VDARSDVYSLGCVLYEVLT 214

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMAPEWSKNTP 119
           IIH D+KP NI++      K+ DFG+A+ +       T+T  +I GT  Y++PE ++   
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI-GTAQYLSPEQARGDS 195
Query: 120 ISMKANVFNYGVVLLEIVC 138
           +  +++V++ G VL E++ 
Sbjct: 196 VDARSDVYSLGCVLYEVLT 214

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +    + GT  +MAPE
Sbjct: 134 YLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFV-GTPFWMAPE 189
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             K +    KA++++ G+  +E+ 
Sbjct: 190 VIKQSAYDSKADIWSLGITAIELA 213

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +    + GT  +MAPE
Sbjct: 119 YLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFV-GTPFWMAPE 174
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             K +    KA++++ G+  +E+ 
Sbjct: 175 VIKQSAYDSKADIWSLGITAIELA 198

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMAPEWSKNTP 119
           IIH D+KP NI++      K+ DFG+A+ +       T+T  +I GT  Y++PE ++   
Sbjct: 154 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI-GTAQYLSPEQARGDS 212
Query: 120 ISMKANVFNYGVVLLEIVC 138
           +  +++V++ G VL E++ 
Sbjct: 213 VDARSDVYSLGCVLYEVLT 231

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E +   IH DIK  N+L+ E    K++DFG+A  L   Q +    + GT  +MAPE
Sbjct: 131 YLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFV-GTPFWMAPE 186
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
             K +    KA++++ G+  +E+ 
Sbjct: 187 VIKQSAYDFKADIWSLGITAIELA 210

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 146 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 202
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 203 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 231

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP--DQTRTFTLIRGTRGYMAPEWSKNTPI 120
           IIH D+KP NIL+      K+ DFG+A+ +    +       + GT  Y++PE ++   +
Sbjct: 137 IIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYLSPEQARGDSV 196
Query: 121 SMKANVFNYGVVLLEIVC 138
             +++V++ G VL E++ 
Sbjct: 197 DARSDVYSLGCVLYEVLT 214

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 147 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 203
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 204 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 232

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 123 YLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 179
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E      + P S +++V+ +G+VL E++ 
Sbjct: 180 EVIRMQDSNPYSFQSDVYAFGIVLYELMT 208

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      ++      G+  +MAP
Sbjct: 147 YLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAP 203
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E      N P S +++V++YG+VL E++ 
Sbjct: 204 EVIRMQDNNPFSFQSDVYSYGIVLYELMT 232

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 124 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 180
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E        P S +++V+ +G+VL E++  +
Sbjct: 181 EVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 46  LPQPSCNVYLHNECEA-------PIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR 98
            P P    Y    C A        II+ D+KP NIL+D+    KI+DFG AK + PD T 
Sbjct: 103 FPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV-PDVTY 161
Query: 99  TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
                 GT  Y+APE     P +   + +++G+++ E++ 
Sbjct: 162 XLC---GTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA 198

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 124 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 180
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E        P S +++V+ +G+VL E++  +
Sbjct: 181 EVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 121 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 177
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 178 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 206

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 119 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 176 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 119 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 176 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NIL+DE    K++DFGL+K  +  + + ++   GT  YMAPE       + 
Sbjct: 147 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC-GTVEYMAPEVVNRRGHTQ 205
Query: 123 KANVFNYGVVLLEIVC 138
            A+ +++GV++ E++ 
Sbjct: 206 SADWWSFGVLMFEMLT 221

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NIL+DE    K++DFGL+K  +  + + ++   GT  YMAPE       + 
Sbjct: 148 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC-GTVEYMAPEVVNRRGHTQ 206
Query: 123 KANVFNYGVVLLEIVC 138
            A+ +++GV++ E++ 
Sbjct: 207 SADWWSFGVLMFEMLT 222

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NIL+DE    K++DFGL+K  +  + + ++   GT  YMAPE       + 
Sbjct: 147 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC-GTVEYMAPEVVNRRGHTQ 205
Query: 123 KANVFNYGVVLLEIVC 138
            A+ +++GV++ E++ 
Sbjct: 206 SADWWSFGVLMFEMLT 221

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H D+KP N+ +D     K+ DFGLA++L  D +   T + GT  YM+PE       + 
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFV-GTPYYMSPEQMNRMSYNE 195
Query: 123 KANVFNYGVVLLEI 136
           K+++++ G +L E+
Sbjct: 196 KSDIWSLGCLLYEL 209

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R  + + GT  Y++
Sbjct: 148 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV-GTAQYVS 203
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 204 PELLTEKSACKSSDLWALGCIIYQLVA 230

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 147 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 202
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 203 PELLTEKSAXKSSDLWALGCIIYQLVA 229

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA-KLLMPDQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 135 YLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E      + P S +++V+ +G+VL E++  +
Sbjct: 192 EVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA-KLLMPDQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 147 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 203
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 204 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 232

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA-KLLMPDQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 135 YLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E      + P S +++V+ +G+VL E++ 
Sbjct: 192 EVIRMQDSNPYSFQSDVYAFGIVLYELMT 220

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA-KLLMPDQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 139 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 195
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVC 138
           E        P S +++V+ +G+VL E++ 
Sbjct: 196 EVIRMQDKNPYSFQSDVYAFGIVLYELMT 224

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFW--------TAKISDFGLAKLLMPDQTRTFTL-IR 104
           YLH+E   PIIH D+K  NIL+ +            KI+DFGLA+    +  RT  +   
Sbjct: 120 YLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR----EWHRTTKMSAA 175
Query: 105 GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           G   +MAPE  + +  S  ++V++YGV+L E++
Sbjct: 176 GAYAWMAPEVIRASMFSKGSDVWSYGVLLWELL 208

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 145 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFV-GTAQYVS 200
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 201 PELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R  + + GT  Y++
Sbjct: 144 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV-GTAQYVS 199
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 200 PELLTEKSACKSSDLWALGCIIYQLVA 226

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH+     I+H D+KP N+L   +DE     ISDFGL+K  M D     +   GT GY+
Sbjct: 131 YLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK--MEDPGSVLSTACGTPGYV 185
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVC 138
           APE     P S   + ++ GV+   ++C
Sbjct: 186 APEVLAQKPYSKAVDCWSIGVIAYILLC 213

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 139 YIHS---ANVLHRDLKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRA 195
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 196 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA-KLLMPDQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 119 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 175
Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E        P S +++V+ +G+VL E++  +
Sbjct: 176 EVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTA-KISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
            YLH+     +IH D+KP N+L+    T  KI DFG A  +    T      +G+  +MA
Sbjct: 117 AYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNN----KGSAAWMA 172
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
           PE  + +  S K +VF++G++L E++  R+  +
Sbjct: 173 PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFD 205

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH+     I+H D+KP N+L   +DE     ISDFGL+K  M D     +   GT GY+
Sbjct: 131 YLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK--MEDPGSVLSTACGTPGYV 185
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVC 138
           APE     P S   + ++ GV+   ++C
Sbjct: 186 APEVLAQKPYSKAVDCWSIGVIAYILLC 213

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH+     I+H D+KP N+L   +DE     ISDFGL+K  M D     +   GT GY+
Sbjct: 131 YLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK--MEDPGSVLSTACGTPGYV 185
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVC 138
           APE     P S   + ++ GV+   ++C
Sbjct: 186 APEVLAQKPYSKAVDCWSIGVIAYILLC 213

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 147 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 202
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 203 PELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 147 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 202
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 203 PELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH+     I+H D+KP N+L   +DE     ISDFGL+K  M D     +   GT GY+
Sbjct: 131 YLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK--MEDPGSVLSTACGTPGYV 185
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVC 138
           APE     P S   + ++ GV+   ++C
Sbjct: 186 APEVLAQKPYSKAVDCWSIGVIAYILLC 213

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 124 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 179
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 180 PELLTEKSACKSSDLWALGCIIYQLVA 206

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 147 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 202
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 203 PELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 123 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 178
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 179 PELLTEKSACKSSDLWALGCIIYQLVA 205

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTA-KISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
            YLH+     +IH D+KP N+L+    T  KI DFG A  +    T      +G+  +MA
Sbjct: 116 AYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNN----KGSAAWMA 171
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
           PE  + +  S K +VF++G++L E++  R+  +
Sbjct: 172 PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFD 204

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 145 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 200
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 201 PELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 122 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 177
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 178 PELLTEKSACKSSDLWALGCIIYQLVA 204

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 152 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 207
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 208 PELLTEKSACKSSDLWALGCIIYQLVA 234

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 145 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 200
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 201 PELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 148 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 203
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 204 PELLTEKSACKSSDLWALGCIIYQLVA 230

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 125 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 180
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 181 PELLTEKSACKSSDLWALGCIIYQLVA 207

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 147 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 202
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 203 PELLTEKSACKSSDLWALGCIIYQLVA 229

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 150 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 205
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 206 PELLTEKSACKSSDLWALGCIIYQLVA 232

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 145 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 200
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 201 PELLTEKSACKSSDLWALGCIIYQLVA 227

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 139 YIHS---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 195
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 196 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 199
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 199
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 129 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 184
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 185 PELLTEKSACKSSDLWALGCIIYQLVA 211

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 139 YIHS---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 195
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 196 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWT 80
           F  ++ R    EK+++L +  +L   S   YLH   E  I+H D+KP N+L    +E   
Sbjct: 94  FDRILERGVYTEKDASLVIQQVL---SAVKYLH---ENGIVHRDLKPENLLYLTPEENSK 147
Query: 81  AKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             I+DFGL+K+   +Q    +   GT GY+APE     P S   + ++ GV+   ++C
Sbjct: 148 IMITDFGLSKM---EQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLC 202

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYMAPEWSKNTP 119
           I+H DIK  NI + +  T ++ DFG+A++L      T  L R   GT  Y++PE  +N P
Sbjct: 146 ILHRDIKSQNIFLTKDGTVQLGDFGIARVL----NSTVELARACIGTPYYLSPEICENKP 201
Query: 120 ISMKANVFNYGVVLLEIVCCRRNME 144
            + K++++  G VL E+   +   E
Sbjct: 202 YNNKSDIWALGCVLYELCTLKHAFE 226

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 141 YIHS---ANVLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 197
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 198 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P+  Q R    + GT  Y++
Sbjct: 144 YLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV-GTAQYVS 199
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVC 138
           PE          ++++  G ++ ++V 
Sbjct: 200 PELLTEKSACKSSDLWALGCIIYQLVA 226

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 159 YIHS---ANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 215
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 216 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H++    +IH D+KP NI + +    KI DFGL   L  D  RT +  +GT  YM+PE
Sbjct: 151 YIHSK---KLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRS--KGTLRYMSPE 205
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
              +     + +++  G++L E++
Sbjct: 206 QISSQDYGKEVDLYALGLILAELL 229

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 147 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 203
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 204 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 233

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 139 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 195
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 196 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 99  RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 155
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME- 144
           ++L+  D   TFT   G +    + APE       S+K++V+ +GV+L EI     +   
Sbjct: 156 SRLMTGD---TFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP 212
Query: 145 -IDPSKPEEIV 154
            IDPS+  E++
Sbjct: 213 GIDPSQVYELL 223

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I++ D+KP NIL+D+    +ISD GLA  +   QT    +  GT GYMAPE  KN   + 
Sbjct: 307 IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRV--GTVGYMAPEVVKNERYTF 364
Query: 123 KANVFNYGVVLLEIV 137
             + +  G +L E++
Sbjct: 365 SPDWWALGCLLYEMI 379

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 199
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 144 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 200
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 201 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 230

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 145 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 201
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 202 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 231

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 136 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 192
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 193 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 222

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 199
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 139 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 195
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 196 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 137 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 193
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 194 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 223

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 159 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 215
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 216 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 199
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 141 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 197
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 198 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 137 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 193
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 194 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 223

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T   T    TR Y A
Sbjct: 141 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 197
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 198 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           I++ D+KP NIL+D+    +ISD GLA  +   QT    +  GT GYMAPE  KN   + 
Sbjct: 307 IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRV--GTVGYMAPEVVKNERYTF 364
Query: 123 KANVFNYGVVLLEIV 137
             + +  G +L E++
Sbjct: 365 SPDWWALGCLLYEMI 379

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H D+KP N+ +D     K+ DFGLA++L  D +     + GT  YM+PE       + 
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFV-GTPYYMSPEQMNRMSYNE 195
Query: 123 KANVFNYGVVLLEI 136
           K+++++ G +L E+
Sbjct: 196 KSDIWSLGCLLYEL 209

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE
Sbjct: 131 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPE 186
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMI 210

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR--GTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T  L     TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRA 199
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR--GTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T  L     TR Y A
Sbjct: 144 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRA 200
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 201 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 230

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    + 
Sbjct: 121 EASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 180
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++V+++GV++ E+
Sbjct: 181 YSSKSDVWSFGVLMWEV 197

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW-SKNTPI 120
           ++H DIK  NIL+D     AK+ DFG   LL       +T   GTR Y  PEW S++   
Sbjct: 160 VVHRDIKDENILIDLRRGCAKLIDFGSGALL---HDEPYTDFDGTRVYSPPEWISRHQYH 216
Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFI 164
           ++ A V++ G++L ++VC     E D    +EI+   L +   +
Sbjct: 217 ALPATVWSLGILLYDMVCGDIPFERD----QEILEAELHFPAHV 256

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H D+KP N+ +D     K+ DFGLA++L  D+      + GT  YM+PE       + 
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAKEFV-GTPYYMSPEQMNRMSYNE 195
Query: 123 KANVFNYGVVLLEI 136
           K+++++ G +L E+
Sbjct: 196 KSDIWSLGCLLYEL 209

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP--DQTRTFTLIRGTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  P  D T   T    TR Y A
Sbjct: 159 YIHS---ANVLHRDLKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRA 215
Query: 112 PEWSKNTPISMKA-NVFNYGVVLLEIVCCR 140
           PE   N+    K+ ++++ G +L E++  R
Sbjct: 216 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    + 
Sbjct: 121 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 180
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++V+++GV++ E+
Sbjct: 181 YSSKSDVWSFGVLMWEV 197

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    + 
Sbjct: 119 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 178
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++V+++GV++ E+
Sbjct: 179 YSSKSDVWSFGVLMWEV 195

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW-----SKN 117
           +IH D+KP NIL+DE    K+ DFG++  L+ D+ +  +   G   YMAPE         
Sbjct: 146 VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA--GCAAYMAPERIDPPDPTK 203
Query: 118 TPISMKANVFNYGVVLLEIVC-------CRRNMEI 145
               ++A+V++ G+ L+E+         C+ + E+
Sbjct: 204 PDYDIRADVWSLGISLVELATGQFPYKNCKTDFEV 238

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    + 
Sbjct: 124 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 183
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++V+++GV++ E+
Sbjct: 184 YSSKSDVWSFGVLMWEV 200

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    + 
Sbjct: 122 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 181
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++V+++GV++ E+
Sbjct: 182 YSSKSDVWSFGVLMWEV 198

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE    + 
Sbjct: 141 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 200
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++V+++GV++ E+
Sbjct: 201 YSSKSDVWSFGVLMWEV 217

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 99  RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 155
Query: 89  AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME--ID 146
           ++L+  D        +    + APE       S+K++V+ +GV+L EI     +    ID
Sbjct: 156 SRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID 215
Query: 147 PSKPEEIV 154
           PS+  E++
Sbjct: 216 PSQVYELL 223

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKI 83
           F  +V+R +  E+E+      I+   S   Y H      I+H D+KP N+L+DE    KI
Sbjct: 101 FDYIVQRDKMSEQEARRFFQQII---SAVEYCHRH---KIVHRDLKPENLLLDEHLNVKI 154
Query: 84  SDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-WSKNTPISMKANVFNYGVVLLEIVCCRRN 142
           +DFGL+ ++        +   G+  Y APE  S       + +V++ GV+L  ++ CRR 
Sbjct: 155 ADFGLSNIMTDGNFLKTSC--GSPNYAAPEVISGKLYAGPEVDVWSCGVILY-VMLCRRL 211
Query: 143 MEIDPSKPEEIVFINLT 159
              D S P  ++F N++
Sbjct: 212 PFDDESIP--VLFKNIS 226

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +YLH+     I+H D+   N+L+      KI+DFGLA  L     + +TL  GT  Y++P
Sbjct: 126 LYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLC-GTPNYISP 181
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFIDREFDK 170
           E +  +   ++++V++ G +   ++  R   + D  K    ++V  +     F+  E   
Sbjct: 182 EIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKD 241
Query: 171 LVH 173
           L+H
Sbjct: 242 LIH 244

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKI 83
           F  +V+R +  E+E+      I+   S   Y H      I+H D+KP N+L+DE    KI
Sbjct: 100 FDYIVQRDKMSEQEARRFFQQII---SAVEYCHRH---KIVHRDLKPENLLLDEHLNVKI 153
Query: 84  SDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-WSKNTPISMKANVFNYGVVLLEIVCCRRN 142
           +DFGL+ ++        +   G+  Y APE  S       + +V++ GV+L  ++ CRR 
Sbjct: 154 ADFGLSNIMTDGNFLKTSC--GSPNYAAPEVISGKLYAGPEVDVWSCGVILY-VMLCRRL 210
Query: 143 MEIDPSKPEEIVFINLT 159
              D S P  ++F N++
Sbjct: 211 PFDDESIP--VLFKNIS 225

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKI 83
           F  +V+R +  E+E+      I+   S   Y H      I+H D+KP N+L+DE    KI
Sbjct: 91  FDYIVQRDKMSEQEARRFFQQII---SAVEYCHRH---KIVHRDLKPENLLLDEHLNVKI 144
Query: 84  SDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-WSKNTPISMKANVFNYGVVLLEIVCCRRN 142
           +DFGL+ ++        +   G+  Y APE  S       + +V++ GV+L  ++ CRR 
Sbjct: 145 ADFGLSNIMTDGNFLKTSC--GSPNYAAPEVISGKLYAGPEVDVWSCGVILY-VMLCRRL 201
Query: 143 MEIDPSKPEEIVFINLT 159
              D S P  ++F N++
Sbjct: 202 PFDDESIP--VLFKNIS 216

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKI 83
           F  +V+R +  E+E+      I+   S   Y H      I+H D+KP N+L+DE    KI
Sbjct: 95  FDYIVQRDKMSEQEARRFFQQII---SAVEYCHRH---KIVHRDLKPENLLLDEHLNVKI 148
Query: 84  SDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-WSKNTPISMKANVFNYGVVLLEIVCCRRN 142
           +DFGL+ ++        +   G+  Y APE  S       + +V++ GV+L  ++ CRR 
Sbjct: 149 ADFGLSNIMTDGNFLKTSC--GSPNYAAPEVISGKLYAGPEVDVWSCGVILY-VMLCRRL 205
Query: 143 MEIDPSKPEEIVFINLT 159
              D S P  ++F N++
Sbjct: 206 PFDDESIP--VLFKNIS 220

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 99  RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 155
Query: 89  AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME--ID 146
           ++L+  D        +    + APE       S+K++V+ +GV+L EI     +    ID
Sbjct: 156 SRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID 215
Query: 147 PSKPEEIV 154
           PS+  E++
Sbjct: 216 PSQVYELL 223

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++   ++ GT  +MAPE
Sbjct: 131 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMV-GTPYWMAPE 186
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMI 210

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 117 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 173
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 174 PELLKRREFHAEPVDVWSCGIVLTAMLA 201

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH +IK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE
Sbjct: 132 FLHSN---QVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPE 187
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 188 VVTRKAYGPKVDIWSLGIMAIEMI 211

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++   ++ GT  +MAPE
Sbjct: 132 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMV-GTPYWMAPE 187
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 188 VVTRKAYGPKVDIWSLGIMAIEMI 211

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLA 202

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMA 111
           VYLH      I H DIKP N+L+DE    KISDFGLA +    ++ R    + GT  Y+A
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 112 PEWSKNTPISMK-ANVFNYGVVLLEIVC 138
           PE  K      +  +V++ G+VL  ++ 
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLA 203

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++   ++ GT  +MAPE
Sbjct: 131 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMV-GTPYWMAPE 186
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMI 210

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE----WSKNT 118
           IIH DIKP NIL+D     K+ DFG++  L+    +T     G R YMAPE     +   
Sbjct: 147 IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDA--GCRPYMAPERIDPSASRQ 204
Query: 119 PISMKANVFNYGVVLLEIVCCR 140
              ++++V++ G+ L E+   R
Sbjct: 205 GYDVRSDVWSLGITLYELATGR 226

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            +LH++    ++H D+KP NI +      K+ DFGL  L+         +  G   YMAP
Sbjct: 171 AHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGL--LVELGTAGAGEVQEGDPRYMAP 225
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           E  + +     A+VF+ G+ +LE+ C   NME+
Sbjct: 226 ELLQGS-YGTAADVFSLGLTILEVAC---NMEL 254

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 56  HNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW- 114
           H   +  +IH D+KP N+L++     K+ DFG++  L+ D  +      G + YMAPE  
Sbjct: 124 HLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDID--AGCKPYMAPERI 181
Query: 115 ---SKNTPISMKANVFNYGVVLLEIVCCR 140
                    S+K+++++ G+ ++E+   R
Sbjct: 182 NPELNQKGYSVKSDIWSLGITMIELAILR 210

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+      KI+DFGLA+++   +   +T   G +    + APE       
Sbjct: 306 IHRDLRAANILVSASLVCKIADFGLARVI---EDNEYTAREGAKFPIKWTAPEAINFGSF 362
Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++K++V+++G++L+EIV   R      S PE I  +   Y+
Sbjct: 363 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR 403

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +  + KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 126 IHRDLRAANILVSDTLSCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 182
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L EIV   R
Sbjct: 183 TIKSDVWSFGILLTEIVTHGR 203

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 56  HNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW- 114
           H   +  +IH D+KP N+L++     K+ DFG++  L+    +T     G + YMAPE  
Sbjct: 168 HLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTID--AGCKPYMAPERI 225
Query: 115 ---SKNTPISMKANVFNYGVVLLEIVCCR 140
                    S+K+++++ G+ ++E+   R
Sbjct: 226 NPELNQKGYSVKSDIWSLGITMIELAILR 254

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 266 YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA-TMKTFCGTPEYLAPE 322
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 323 VLEDNDYGRAVDWWGLGVVMYEMMCGR 349

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 34  KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM 93
           +E+E ++ L + L       +LH++    ++H D+KP NI        K+ DFGL   + 
Sbjct: 113 EERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMD 169
Query: 94  PDQTRTFTLIR-----------GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
            D+     L             GT+ YM+PE       S K ++F+ G++L E++
Sbjct: 170 QDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 1   MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKES-NLGLLLILPQPSCN--VYLHN 57
           +K KG  E +GE+  ++  +    G++   R+   + S  L  LL+  Q  C    YLH+
Sbjct: 79  IKYKGCCEDQGEKSLQLVMEYVPLGSL---RDYLPRHSIGLAQLLLFAQQICEGMAYLHS 135
Query: 58  ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEW 114
           +     IH ++   N+L+D     KI DFGLAK  +P+    + +         + APE 
Sbjct: 136 Q---HYIHRNLAARNVLLDNDRLVKIGDFGLAK-AVPEGHEYYRVREDGDSPVFWYAPEC 191
Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
            K       ++V+++GV L E++    + +  P+K  E++ I
Sbjct: 192 LKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGI 233

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 307 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 360
Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
              K       A+ F+ G +L +++
Sbjct: 361 VLQKGVAYDSSADWFSLGCMLFKLL 385

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 263 YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA-TMKTFCGTPEYLAPE 319
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 320 VLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 306 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 359
Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
              K       A+ F+ G +L +++
Sbjct: 360 VLQKGVAYDSSADWFSLGCMLFKLL 384

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 307 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 360
Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
              K       A+ F+ G +L +++
Sbjct: 361 VLQKGVAYDSSADWFSLGCMLFKLL 385

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 307 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 360
Query: 114 -WSKNTPISMKANVFNYGVVLLEIV 137
              K       A+ F+ G +L +++
Sbjct: 361 VLQKGVAYDSSADWFSLGCMLFKLL 385

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 139 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 198
Query: 124 ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++V+++G++L EIV   R      + PE I  +   Y+
Sbjct: 199 SDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR 236

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +  + KI+DFGLA+L+   +   +T   G +    + APE       
Sbjct: 141 IHRDLRAANILVSDTLSCKIADFGLARLI---EDNEYTAREGAKFPIKWTAPEAINYGTF 197
Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++K++V+++G++L EIV   R      + PE I  +   Y+
Sbjct: 198 TIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR 238

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +  + KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 136 IHRDLRAANILVSDTLSCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 192
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L EIV   R
Sbjct: 193 TIKSDVWSFGILLTEIVTHGR 213

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 101 RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 157
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 158 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+E+ + + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 120 RECNREEVTAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHVVKVADFGL 176
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 177 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIA 225

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +  + KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 137 IHRDLRAANILVSDTLSCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 193
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L EIV   R
Sbjct: 194 TIKSDVWSFGILLTEIVTHGR 214

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 137 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 196
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L EIV   R
Sbjct: 197 SDVWSFGILLTEIVTHGR 214

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+      KI+DFGLA+++   +   +T   G +    + APE       
Sbjct: 133 IHRDLRAANILVSASLVCKIADFGLARVI---EDNEYTAREGAKFPIKWTAPEAINFGSF 189
Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++K++V+++G++L+EIV   R      S PE I  +   Y+
Sbjct: 190 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR 230

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +  + KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 187
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L EIV   R
Sbjct: 188 TIKSDVWSFGILLTEIVTHGR 208

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 106 RECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 162
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 163 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 132 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 191
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L EIV   R
Sbjct: 192 SDVWSFGILLTEIVTHGR 209

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 124 YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA-TMKXFCGTPEYLAPE 180
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 181 VLEDNDYGRAVDWWGLGVVMYEMMCGR 207

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 101 RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 157
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 158 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 123 YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA-TMKXFCGTPEYLAPE 179
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 180 VLEDNDYGRAVDWWGLGVVMYEMMCGR 206

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 190
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L EIV   R
Sbjct: 191 SDVWSFGILLTEIVTHGR 208

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      I+H D+KP N+L    DE     ISDFGL+K  M  +    +   GT GY+
Sbjct: 135 YLHR---MGIVHRDLKPENLLYYSQDEESKIMISDFGLSK--MEGKGDVMSTACGTPGYV 189
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVC 138
           APE     P S   + ++ GV+   ++C
Sbjct: 190 APEVLAQKPYSKAVDCWSIGVIAYILLC 217

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 190
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L EIV   R
Sbjct: 191 SDVWSFGILLTEIVTHGR 208

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 125 YLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA-TMKXFCGTPEYLAPE 181
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 182 VLEDNDYGRAVDWWGLGVVMYEMMCGR 208

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 133 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 192
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L EIV   R
Sbjct: 193 SDVWSFGILLTEIVTHGR 210

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE       ++K
Sbjct: 140 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIK 199
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L EIV   R
Sbjct: 200 SDVWSFGILLTEIVTHGR 217

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 101 RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 157
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 158 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 30  RRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           R  N+++ S + LL +  Q S  + YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 101 RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 157
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 158 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+HNE    I H D+KP NILMD+    K+SDFG ++ ++  + +     RGT  +M PE
Sbjct: 166 YIHNE--KNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKG---SRGTYEFMPPE 220
Query: 114 WSKN--TPISMKANVFNYGVVL 133
           +  N  +    K ++++ G+ L
Sbjct: 221 FFSNESSYNGAKVDIWSLGICL 242

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 53  VYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
            Y H++    ++H D+KP NIL  +       KI DFGLA+L   D+  T     GT  Y
Sbjct: 138 AYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNA--AGTALY 192
Query: 110 MAPEWSKNTPISMKANVFNYGVVL 133
           MAPE  K   ++ K ++++ GVV+
Sbjct: 193 MAPEVFKRD-VTFKCDIWSAGVVM 215

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 1   MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKES-NLGLLLILPQPSCN--VYLHN 57
           +K KG  E +GE+  ++  +    G++   R+   + S  L  LL+  Q  C    YLH 
Sbjct: 79  IKYKGCCEDQGEKSLQLVMEYVPLGSL---RDYLPRHSIGLAQLLLFAQQICEGMAYLHA 135
Query: 58  ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEW 114
           +     IH ++   N+L+D     KI DFGLAK  +P+    + +         + APE 
Sbjct: 136 Q---HYIHRNLAARNVLLDNDRLVKIGDFGLAK-AVPEGHEYYRVREDGDSPVFWYAPEC 191
Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
            K       ++V+++GV L E++    + +  P+K  E++ I
Sbjct: 192 LKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGI 233

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 125 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKXFCGTPEYLAPE 180
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 181 VLEDNDYGRAVDWWGLGVVMYEMMCGR 207

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 39  NLGLLLILPQPSCN--VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ 96
            L  LL+  Q  C    YLH +     IH D+   N+L+D     KI DFGLAK  +P+ 
Sbjct: 132 GLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAK-AVPEG 187
Query: 97  TRTFTLIRGTRG---YMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEI 153
              + +         + APE  K       ++V+++GV L E++    + +  P+K  E+
Sbjct: 188 HEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLEL 247
Query: 154 VFI 156
           + I
Sbjct: 248 IGI 250

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 120 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKXFCGTPEYLAPE 175
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 120 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKTFCGTPEYLAPE 175
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 120 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKXFCGTPEYLAPE 175
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 120 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKXFCGTPEYLAPE 175
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 123 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKTFCGTPEYLAPE 178
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 179 VLEDNDYGRAVDWWGLGVVMYEMMCGR 205

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+     AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 182 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN---YIVKGNARLPVKWMAPESIFDCV 238
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            +++++V++YG++L EI     N
Sbjct: 239 YTVQSDVWSYGILLWEIFSLGLN 261

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           YLH      I+H D+KP+N+L+DE    K++DFGLAK    P++     ++  TR Y AP
Sbjct: 127 YLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVV--TRWYRAP 181
Query: 113 EWSKNTPISMKANVFNYGVVLLEIVC 138
           E      +   A ++  GV +  + C
Sbjct: 182 E------LLFGARMYGVGVDMWAVGC 201

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +++ DIK  N+++D+    KI+DFGL K  + D   T     GT  Y+APE
Sbjct: 120 YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKTFCGTPEYLAPE 175
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + APE    
Sbjct: 146 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTAPEAIAF 201
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+V+ E+V 
Sbjct: 202 RKFTSASDVWSYGIVMWEVVS 222

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+ +  + KI+DFGLA+L+   +       +    + APE       ++K
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTIK 190
Query: 124 ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++V+++G++L EIV   R      + PE I  +   Y+
Sbjct: 191 SDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR 228

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   S
Sbjct: 221 IHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGD-TRLPLKWMAPESIFDKIYS 279
Query: 122 MKANVFNYGVVLLEI 136
            K++V++YGV+L EI
Sbjct: 280 TKSDVWSYGVLLWEI 294

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+     AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 174 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN---YIVKGNARLPVKWMAPESIFDCV 230
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            +++++V++YG++L EI     N
Sbjct: 231 YTVQSDVWSYGILLWEIFSLGLN 253

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+     AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 180 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN---YIVKGNARLPVKWMAPESIFDCV 236
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            +++++V++YG++L EI     N
Sbjct: 237 YTVQSDVWSYGILLWEIFSLGLN 259

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+     AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 186 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN---YIVKGNARLPVKWMAPESIFDCV 242
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            +++++V++YG++L EI     N
Sbjct: 243 YTVQSDVWSYGILLWEIFSLGLN 265

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+     AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 186 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN---YIVKGNARLPVKWMAPESIFDCV 242
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            +++++V++YG++L EI     N
Sbjct: 243 YTVQSDVWSYGILLWEIFSLGLN 265

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   N+L+     AKI DFGLA+ +M D      +++G       +MAPE   +  
Sbjct: 188 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN---YIVKGNARLPVKWMAPESIFDCV 244
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            +++++V++YG++L EI     N
Sbjct: 245 YTVQSDVWSYGILLWEIFSLGLN 267

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-------------MPDQTRTF 100
           Y+H++    IIH D+KP NI +DE    KI DFGLAK +             +P  +   
Sbjct: 131 YIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNL 187
Query: 101 TLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIV 137
           T   GT  Y+A E    T   + K ++++ G++  E++
Sbjct: 188 TSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGT--RGYMAPEWSKNTPIS 121
           +H D+   N+L+D     K+SDFGL+++L  D    +T   G     + APE       S
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFS 232
Query: 122 MKANVFNYGVVLLEIVC 138
             ++V+++GVV+ E++ 
Sbjct: 233 SASDVWSFGVVMWEVLA 249

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 106 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 162
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 163 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 103 RECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 159
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 160 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 208

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 114 RECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 170
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 171 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 219

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 103 RECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL 159
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 160 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 208

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-------------MPDQTRTF 100
           Y+H++    IIH D+KP NI +DE    KI DFGLAK +             +P  +   
Sbjct: 131 YIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNL 187
Query: 101 TLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIV 137
           T   GT  Y+A E    T   + K ++++ G++  E++
Sbjct: 188 TSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGLA++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 102 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 158
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 159 SRLMTGD---TYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 207

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 31  RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK 90
           RE   +E N  +LL +     +   + E +   IH D+   N L+ E    K++DFGL++
Sbjct: 101 RECNRQEVNAVVLLYMATQISSAMEYLE-KKNFIHRDLAARNCLVGENHLVKVADFGLSR 159
Query: 91  LLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 160 LMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 103 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 159
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 160 SRLMTGD---TYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 208

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFG++++L  D    +T    TRG      + APE    
Sbjct: 138 VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYT----TRGGKIPIRWTAPEAIAY 193
Query: 118 TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
              +  ++V++YG+V+ E++        D S  + I  I   Y+
Sbjct: 194 RKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYR 237

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 106 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 162
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 163 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 105 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 161
Query: 89  AKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 162 SRLMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 210

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 31  RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK 90
           RE   +E N  +LL +     +   + E +   IH D+   N L+ E    K++DFGL++
Sbjct: 101 RECNRQEVNAVVLLYMATQISSAMEYLE-KKNFIHRDLAARNCLVGENHLVKVADFGLSR 159
Query: 91  LLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 160 LMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD--QTRTFTLIRGTRGYMAPEWSKNTPI 120
           II+ D+K  N+++D     KI+DFG+ K  M D   TR F    GT  Y+APE     P 
Sbjct: 141 IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTREFC---GTPDYIAPEIIAYQPY 197
Query: 121 SMKANVFNYGVVLLEIVC 138
               + + YGV+L E++ 
Sbjct: 198 GKSVDWWAYGVLLYEMLA 215

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFG++++L  D    +T    TRG      + APE    
Sbjct: 132 VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYT----TRGGKIPIRWTAPEAIAY 187
Query: 118 TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
              +  ++V++YG+V+ E++        D S  + I  I   Y+
Sbjct: 188 RKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYR 231

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 31  RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK 90
           RE   +E N  +LL +     +   + E +   IH D+   N L+ E    K++DFGL++
Sbjct: 106 RECNRQEVNAVVLLYMATQISSAMEYLE-KKNFIHRDLAARNCLVGENHLVKVADFGLSR 164
Query: 91  LLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           L+  D   T+T   G +    + APE       S+K++V+ +GV+L EI 
Sbjct: 165 LMTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE-WSKNTPIS 121
           ++H D+KP N+L+D    AKI+DFGL+ ++   +    +   G+  Y APE  S      
Sbjct: 137 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRXSC--GSPNYAAPEVISGRLYAG 194
Query: 122 MKANVFNYGVVLLEIVC 138
            + ++++ GV+L  ++C
Sbjct: 195 PEVDIWSSGVILYALLC 211

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN+    +IH DIK  +IL+      K+SDFG    +  +  +   L+ GT  +MAPE
Sbjct: 156 YLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLV-GTPYWMAPE 211
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                P   + ++++ G++++E++
Sbjct: 212 VISRLPYGTEVDIWSLGIMVIEMI 235

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH +++  NIL+ +  + KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 127 IHRNLRAANILVSDTLSCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 183
Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++K++V+++G++L EIV   R      + PE I  +   Y+
Sbjct: 184 TIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR 224

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 63  IIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           I+H D+KP N+L+    +    K++DFGLA  +  DQ   F    GT GY++PE  +  P
Sbjct: 124 IVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFA-GTPGYLSPEVLRKDP 182
Query: 120 ISMKANVFNYGVVL 133
                +++  GV+L
Sbjct: 183 YGKPVDMWACGVIL 196

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  N+L+ E    KI+DFGLA+++   +   +T   G +    + APE       
Sbjct: 131 IHRDLRAANVLVSESLMCKIADFGLARVI---EDNEYTAREGAKFPIKWTAPEAINFGCF 187
Query: 121 SMKANVFNYGVVLLEIVC 138
           ++K+NV+++G++L EIV 
Sbjct: 188 TIKSNVWSFGILLYEIVT 205

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFG++++L  D    +T    TRG      + APE    
Sbjct: 153 VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYT----TRGGKIPIRWTAPEAIAY 208
Query: 118 TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
              +  ++V++YG+V+ E++        D S  + I  I   Y+
Sbjct: 209 RKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYR 252

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           ++H DIKP N+ +      K+ D GL +      T   +L+ GT  YM+PE       + 
Sbjct: 157 VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLV-GTPYYMSPERIHENGYNF 215
Query: 123 KANVFNYGVVLLEIVCCR 140
           K+++++ G +L E+   +
Sbjct: 216 KSDIWSLGCLLYEMAALQ 233

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 63  IIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           I+H D+KP N+L+    +    K++DFGLA  +  DQ   F    GT GY++PE  +  P
Sbjct: 124 IVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFA-GTPGYLSPEVLRKDP 182
Query: 120 ISMKANVFNYGVVL 133
                +++  GV+L
Sbjct: 183 YGKPVDMWACGVIL 196

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           +H D+   N+L+D     K+SDFGL+++L   PD   T T  +    + APE       S
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFS 232
Query: 122 MKANVFNYGVVLLEIVC 138
             ++V+++GVV+ E++ 
Sbjct: 233 SASDVWSFGVVMWEVLA 249

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGT--RGYMAPEWSKNTPIS 121
           +H D+   NIL++     K+SDFGL++++  D    +T   G     + APE  +    +
Sbjct: 167 VHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFT 226
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
             ++V++YG+V+ E++        D S  + I  I   Y+
Sbjct: 227 SASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYR 266

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H++    +I+ D+KP NI + +    KI DFGL   L  D  R  +  +GT  YM+PE
Sbjct: 137 YIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRS--KGTLRYMSPE 191
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
              +     + +++  G++L E++
Sbjct: 192 QISSQDYGKEVDLYALGLILAELL 215

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 102 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 158
Query: 89  AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D        +    + APE       S+K++V+ +GV+L EI 
Sbjct: 159 SRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 207

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  L   D T TF    GT  Y+A
Sbjct: 168 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC---GTPNYIA 221
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           PE  +        + +  GV++ E++  R   +I
Sbjct: 222 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 255

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 385 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 441
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 442 TIKSDVWSFGILLTELTTKGR 462

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 31  RENKEKESNLGLLLILPQ--PSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RE   +E N  +LL +     S   YL  +     IH D+   N L+ E    K++DFGL
Sbjct: 106 RECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGL 162
Query: 89  AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L+  D        +    + APE       S+K++V+ +GV+L EI 
Sbjct: 163 SRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 211

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D+   N+L+ E   AK+SDFGL K     Q      ++ T    APE  +    S 
Sbjct: 129 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT----APEALREAAFST 184
Query: 123 KANVFNYGVVLLEIVCCRR 141
           K++V+++G++L EI    R
Sbjct: 185 KSDVWSFGILLWEIYSFGR 203

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E   +H D+   N+L+     AKISDFGL+K L  D +       G     + APE    
Sbjct: 128 EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF 187
Query: 118 TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
              S +++V++YGV + E +   +        PE + FI
Sbjct: 188 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFI 226

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           +H D+   NIL++     KI+DFGLAKLL  D+        G     + APE   +   S
Sbjct: 133 VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVREPGQSPIFWYAPESLSDNIFS 192
Query: 122 MKANVFNYGVVLLEI 136
            +++V+++GVVL E+
Sbjct: 193 RQSDVWSFGVVLYEL 207

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH  C   I+H D+KP NIL+    T K++DFGLA++       T  ++  T  Y APE
Sbjct: 135 FLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVV--TLWYRAPE 189
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 190 VLLQSTYATPVDMWSVGCIFAEM 212

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 33  NKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL 91
           N+++ S + LL +  Q S  + YL  +     IH ++   N L+ E    K++DFGL++L
Sbjct: 311 NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRL 367
Query: 92  LMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
           +  D   T+T   G +    + APE       S+K++V+ +GV+L EI  
Sbjct: 368 MTGD---TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 414

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP-EWSKNTPISM 122
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG   P  W+    I+ 
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 123 K-----ANVFNYGVVLLEIVC 138
           +     ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   +  I+H D+KP NIL+   +     KI DFG+++ +          I GT  Y+
Sbjct: 146 YLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI--GHACELREIMGTPEYL 200
Query: 111 APEWSKNTPISMKANVFNYGVV 132
           APE     PI+   +++N G++
Sbjct: 201 APEILNYDPITTATDMWNIGII 222

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 157 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 212
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 213 RKFTSASDVWSYGIVLWEVMS 233

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 140 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 195
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 196 RKFTSASDVWSYGIVLWEVMS 216

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 140 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 195
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 196 RKFTSASDVWSYGIVLWEVMS 216

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP-EWSKNTPISM 122
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG   P  W+    I+ 
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 123 K-----ANVFNYGVVLLEIVC 138
           +     ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSK 116
            +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE   
Sbjct: 168 FVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIA 223
Query: 117 NTPISMKANVFNYGVVLLEIVC 138
               +  ++V++YG+VL E++ 
Sbjct: 224 YRKFTSASDVWSYGIVLWEVMS 245

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 135 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 194
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 195 YKFSSKSDVWSFGVLMWE 212

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP-EWSKNTPISM 122
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG   P  W+    I+ 
Sbjct: 167 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 222
Query: 123 K-----ANVFNYGVVLLEIVC 138
           +     ++V++YG+VL E++ 
Sbjct: 223 RKFTSASDVWSYGIVLWEVMS 243

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL+++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 358
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 359 TIKSDVWSFGILLTELTTKGR 379

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 358
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 359 TIKSDVWSFGILLTELTTKGR 379

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           +H D+   N+L+      KI DFGLA+ +M D      ++RG       +MAPE      
Sbjct: 194 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN---YVVRGNARLPVKWMAPESLFEGI 250
Query: 120 ISMKANVFNYGVVLLEIVCCRRN 142
            ++K++V++YG++L EI     N
Sbjct: 251 YTIKSDVWSYGILLWEIFSLGVN 273

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 358
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 359 TIKSDVWSFGILLTELTTKGR 379

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 123 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 182
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 183 YKFSSKSDVWSFGVLMWE 200

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 125 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 184
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 185 YKFSSKSDVWSFGVLMWE 202

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 129 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 188
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 189 YKFSSKSDVWSFGVLMWE 206

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 129 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQTHGKWPVKWYAPECINY 188
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 189 YKFSSKSDVWSFGVLMWE 206

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 143 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 202
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 203 YKFSSKSDVWSFGVLMWE 220

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR----GTRGY 109
           YLH   +   IH D+K  NIL+ E  + +I+DFG++  L      T   +R    GT  +
Sbjct: 136 YLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCW 192
Query: 110 MAPEWSKNT-PISMKANVFNYGVVLLEIV 137
           MAPE  +       KA+++++G+  +E+ 
Sbjct: 193 MAPEVMEQVRGYDFKADIWSFGITAIELA 221

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 133 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 189
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 190 TIKSDVWSFGILLTELTTKGR 210

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 145 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 204
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 205 YKFSSKSDVWSFGVLMWE 222

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 145 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 204
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 205 YKFSSKSDVWSFGVLMWE 222

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+      KI+DFGLA+L+  ++       +    + APE +     ++K
Sbjct: 127 IHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIK 186
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L E+V   R
Sbjct: 187 SDVWSFGILLTELVTKGR 204

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           +H D+   NIL++     KI+DFGLAKLL  D+        G     + APE   +   S
Sbjct: 137 VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFS 196
Query: 122 MKANVFNYGVVLLEI 136
            +++V+++GVVL E+
Sbjct: 197 RQSDVWSFGVVLYEL 211

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           +H D+   NIL++     KI+DFGLAKLL  D+        G     + APE   +   S
Sbjct: 136 VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFS 195
Query: 122 MKANVFNYGVVLLEI 136
            +++V+++GVVL E+
Sbjct: 196 RQSDVWSFGVVLYEL 210

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 193 TIKSDVWSFGILLTELTTKGR 213

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL ++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V++YG+VL E++ 
Sbjct: 225 RKFTSASDVWSYGIVLWEVMS 245

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L E+ 
Sbjct: 193 TIKSDVWSFGILLTELT 209

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 193 TIKSDVWSFGILLTELTTKGR 213

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 193 TIKSDVWSFGILLTELTTKGR 213

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR----GTRGY 109
           YLH   +   IH D+K  NIL+ E  + +I+DFG++  L      T   +R    GT  +
Sbjct: 131 YLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCW 187
Query: 110 MAPEWSKNT-PISMKANVFNYGVVLLEIV 137
           MAPE  +       KA+++++G+  +E+ 
Sbjct: 188 MAPEVMEQVRGYDFKADIWSFGITAIELA 216

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 170 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 226
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 227 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 274

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           +H D+   NIL++     KI+DFGLAKLL  D+        G     + APE   +   S
Sbjct: 149 VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFS 208
Query: 122 MKANVFNYGVVLLEI 136
            +++V+++GVVL E+
Sbjct: 209 RQSDVWSFGVVLYEL 223

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 129 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 185
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 186 TIKSDVWSFGILLTELTTKGR 206

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L E+ 
Sbjct: 193 TIKSDVWSFGILLTELT 209

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-TRTFTLIRGTRGYMAPE-WSKNTPI 120
           ++H D+KP N+L+D    AKI+DFGL+ ++   +  RT     G+  Y APE  S     
Sbjct: 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC---GSPNYAAPEVISGRLYA 188
Query: 121 SMKANVFNYGVVLLEIVC 138
             + ++++ GV+L  ++C
Sbjct: 189 GPEVDIWSCGVILYALLC 206

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 127 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 183
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 184 TIKSDVWSFGILLTELTTKGR 204

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L E+ 
Sbjct: 193 TIKSDVWSFGILLTELT 209

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 164 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 220
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 221 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSSECQHLI 268

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 163 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 219
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 220 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSSECQHLI 267

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 29  RRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL 88
           RR   +++E  + L + +       +LH++    ++H D+KP NI        K+ DFGL
Sbjct: 154 RRCSLEDREHGVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGL 210
Query: 89  AKLLMPDQTRTFTLIR-----------GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
              +  D+     L             GT+ YM+PE       S K ++F+ G++L E++
Sbjct: 211 VTAMDQDEEEQTVLTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 164 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 220
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 221 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSSECQHLI 268

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 125 VHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 181
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 182 TIKSDVWSFGILLTELTTKGR 202

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 183 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 239
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 240 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 287

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D+   N+L+ E   AK+SDFGL K     Q      ++ T    APE  +    S 
Sbjct: 138 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT----APEALREKKFST 193
Query: 123 KANVFNYGVVLLEIVCCRR 141
           K++V+++G++L EI    R
Sbjct: 194 KSDVWSFGILLWEIYSFGR 212

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 163 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 219
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 220 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSSECQHLI 267

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 178 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 234
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 235 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 282

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP- 112
           YLH+     IIH D+K  NIL       K++DFG++        R  + I GT  +MAP 
Sbjct: 150 YLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDSFI-GTPYWMAPE 205
Query: 113 ----EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
               E SK+ P   KA+V++ G+ L+E+       EI+P   E
Sbjct: 206 VVMCETSKDRPYDYKADVWSLGITLIEMA------EIEPPHHE 242

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 163 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 219
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 220 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 267

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 151 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 207
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 208 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 255

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 164 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 220
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 221 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSXECQHLI 268

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 150 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 206
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 207 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 254

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTR---GYMAPEWSKNTP 119
           +H D+   NIL++     K+SDFGL++ L  D +  T+T   G +    + APE  +   
Sbjct: 157 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRK 216
Query: 120 ISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
            +  ++V++YG+V+ E++        D +  + I  I   Y+
Sbjct: 217 FTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYR 258

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 136 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 192
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 193 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 240

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP- 112
           YLH+     IIH D+K  NIL       K++DFG++        R  + I GT  +MAP 
Sbjct: 150 YLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI-GTPYWMAPE 205
Query: 113 ----EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
               E SK+ P   KA+V++ G+ L+E+       EI+P   E
Sbjct: 206 VVMCETSKDRPYDYKADVWSLGITLIEMA------EIEPPHHE 242

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWS 115
            E   +H D+   N ++DE +T K++DFGLA+ ++  +  +    R  R    + A E  
Sbjct: 141 AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL 200
Query: 116 KNTPISMKANVFNYGVVLLEIV 137
           +    + K++V+++GV+L E++
Sbjct: 201 QTYRFTTKSDVWSFGVLLWELL 222

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           +H D++  NIL+ E    K++DFGLA+L+  ++       +    + APE +     ++K
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L E+    R
Sbjct: 196 SDVWSFGILLTELTTKGR 213

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           +H D++  NIL+ E    K++DFGLA+L+  ++       +    + APE +     ++K
Sbjct: 126 VHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIK 185
Query: 124 ANVFNYGVVLLEIVCCRR 141
           ++V+++G++L E+    R
Sbjct: 186 SDVWSFGILLTELTTKGR 203

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+        G     + APE    
Sbjct: 487 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 546
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 547 YKFSSKSDVWSFGVLMWE 564

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D+   N+L+ E   AK+SDFGL K     Q      ++ T    APE  +    S 
Sbjct: 310 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT----APEALREKKFST 365
Query: 123 KANVFNYGVVLLEIVCCRR 141
           K++V+++G++L EI    R
Sbjct: 366 KSDVWSFGILLWEIYSFGR 384

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 151 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 207
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 208 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 255

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 164 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 220
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 221 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSXECQHLI 268

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 51  CNVYLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTR 107
           C ++ HN     I+H DIKP NIL++        KI DFGL+     D      L  GT 
Sbjct: 160 CYLHKHN-----IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRL--GTA 212
Query: 108 GYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
            Y+APE  K    + K +V++ GV++  ++C
Sbjct: 213 YYIAPEVLK-KKYNEKCDVWSCGVIMYILLC 242

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 151 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 207
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 208 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 255

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 163 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 219
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 220 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSXECQHLI 267

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 158 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 214
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 215 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 262

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D+   N+L+ E   AK+SDFGL K     Q      ++ T    APE  +    S 
Sbjct: 123 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT----APEALREKKFST 178
Query: 123 KANVFNYGVVLLEIVCCRR 141
           K++V+++G++L EI    R
Sbjct: 179 KSDVWSFGILLWEIYSFGR 197

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 150 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 206
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 207 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 254

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R   L+ GT  +MAPE     P   
Sbjct: 268 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV-GTPYWMAPELISRLPYGP 326
Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 327 EVDIWSLGIMVIEMV 341

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 136 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 192
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 193 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 240

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 178 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 234
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 235 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 282

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 135 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 191
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 192 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 239

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 136 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 192
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 193 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 240

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD---EFWT 80
           F  +V R    E +++  +  IL   + +++ H+     I+H D+KP N+L+    +   
Sbjct: 118 FEDIVAREYYSEADASHCIHQILESVN-HIHQHD-----IVHRDLKPENLLLASKCKGAA 171
Query: 81  AKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVL 133
            K++DFGLA  +  +Q   F    GT GY++PE  +  P     +++  GV+L
Sbjct: 172 VKLADFGLAIEVQGEQQAWFGFA-GTPGYLSPEVLRKDPYGKPVDIWACGVIL 223

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  N+L+ E    KI+DFGLA+++   +   +T   G +    + APE       
Sbjct: 132 IHRDLRAANVLVSESLMCKIADFGLARVI---EDNEYTAREGAKFPIKWTAPEAINFGCF 188
Query: 121 SMKANVFNYGVVLLEIVC 138
           ++K++V+++G++L EIV 
Sbjct: 189 TIKSDVWSFGILLYEIVT 206

>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 178 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 234
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 235 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 282

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQ--TRTFTLIRGTRGYM 110
           YLH+     I+H DIK  N+L++ +    KISDFG +K L      T TFT   GT  YM
Sbjct: 137 YLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT---GTLQYM 190
Query: 111 APEWSKNTP--ISMKANVFNYGVVLLEIVCCR 140
           APE     P      A++++ G  ++E+   +
Sbjct: 191 APEIIDKGPRGYGKAADIWSLGCTIIEMATGK 222

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH  C   I+H D+KP NIL+    T K++DFGLA++    Q   F ++  T  Y APE
Sbjct: 127 FLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS-YQMALFPVVV-TLWYRAPE 181
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 182 VLLQSTYATPVDMWSVGCIFAEM 204

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            IH ++   N L+ E    K++DFGL++L+  D   T+T   G +    + APE      
Sbjct: 378 FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD---TYTAHAGAKFPIKWTAPESLAYNK 434
Query: 120 ISMKANVFNYGVVLLEIVC 138
            S+K++V+ +GV+L EI  
Sbjct: 435 FSIKSDVWAFGVLLWEIAT 453

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYMAPE-WSKNT 118
           ++H D+KP N+L+D    AKI+DFGL+ ++   +      +R   G+  Y APE  S   
Sbjct: 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-----FLRDSCGSPNYAAPEVISGRL 186
Query: 119 PISMKANVFNYGVVLLEIVC 138
               + ++++ GV+L  ++C
Sbjct: 187 YAGPEVDIWSCGVILYALLC 206

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGLA+L+  ++   +T  +G +    + APE +     
Sbjct: 133 VHRDLRAANILVGENLVCKVADFGLARLIEDNE---WTARQGAKFPIKWTAPEAALYGRF 189
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 190 TIKSDVWSFGILLTELTTKGR 210

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 135 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 191
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 192 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 239

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R   L+ GT  +MAPE     P   
Sbjct: 191 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV-GTPYWMAPELISRLPYGP 249
Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 250 EVDIWSLGIMVIEMV 264

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R  TL  GT  Y+APE
Sbjct: 132 YLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLC-GTPNYIAPE 187
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + +V++ G ++  ++  +   E
Sbjct: 188 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 218

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN     +IH D+K  N+ +++    KI DFGLA  +  D  R  TL  GT  Y+APE
Sbjct: 157 YLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKTLC-GTPNYIAPE 212
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + ++++ G +L  ++  +   E
Sbjct: 213 VLCKKGHSFEVDIWSLGCILYTLLVGKPPFE 243

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R  TL  GT  Y+APE
Sbjct: 132 YLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLC-GTPNYIAPE 187
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + +V++ G ++  ++  +   E
Sbjct: 188 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 218

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R  TL  GT  Y+APE
Sbjct: 136 YLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLC-GTPNYIAPE 191
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + +V++ G ++  ++  +   E
Sbjct: 192 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 222

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGT--RGYMAPEWSKNTPIS 121
           +H D+   NIL++     K+SDFGL+++L  D   T+T   G     + APE       +
Sbjct: 169 VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFT 228
Query: 122 MKANVFNYGVVLLEIVC 138
             ++V+++G+V+ E++ 
Sbjct: 229 SASDVWSFGIVMWEVMT 245

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-------------MPDQTRTF 100
           Y+H++    IIH ++KP NI +DE    KI DFGLAK +             +P  +   
Sbjct: 131 YIHSQG---IIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNL 187
Query: 101 TLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIV 137
           T   GT  Y+A E    T   + K + ++ G++  E +
Sbjct: 188 TSAIGTAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXI 225

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQ--TRTFTLIRGTRGYM 110
           YLH+     I+H DIK  N+L++ +    KISDFG +K L      T TFT   GT  YM
Sbjct: 123 YLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT---GTLQYM 176
Query: 111 APEWSKNTP--ISMKANVFNYGVVLLEIVCCR 140
           APE     P      A++++ G  ++E+   +
Sbjct: 177 APEIIDKGPRGYGKAADIWSLGCTIIEMATGK 208

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 131 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 187
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 188 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIGGQVFFRQRVSSECQHLI 235

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 134 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 190
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 191 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 238

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R   L+ GT  +MAPE     P   
Sbjct: 146 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV-GTPYWMAPELISRLPYGP 204
Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 205 EVDIWSLGIMVIEMV 219

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R   L+ GT  +MAPE     P   
Sbjct: 148 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV-GTPYWMAPELISRLPYGP 206
Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 207 EVDIWSLGIMVIEMV 221

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D+   NIL+ E    K++DFGLA+L+   +   +T  +G +    + APE +     
Sbjct: 136 VHRDLAAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRF 192
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 193 TIKSDVWSFGILLTELTTKGR 213

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 131 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 187
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 188 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 235

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+TL  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWTLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP NI++    +    KI D G AK L  DQ    T   GT  Y+
Sbjct: 137 YLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL--DQGELCTEFVGTLQYL 191
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIV 137
           APE  +    ++  + +++G +  E +
Sbjct: 192 APELLEQKKYTVTVDYWSFGTLAFECI 218

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP- 112
           YLH+     IIH D+K  NIL       K++DFG++        R    I GT  +MAP 
Sbjct: 150 YLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDXFI-GTPYWMAPE 205
Query: 113 ----EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
               E SK+ P   KA+V++ G+ L+E+       EI+P   E
Sbjct: 206 VVMCETSKDRPYDYKADVWSLGITLIEMA------EIEPPHHE 242

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH  C   I+H D+KP NIL+    T K++DFGLA++          ++  T  Y APE
Sbjct: 127 FLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALAPVVV--TLWYRAPE 181
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 182 VLLQSTYATPVDMWSVGCIFAEM 204

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 63  IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           ++H DIK  NIL+D      K+ DFG   LL   +   +T   GTR Y  PEW +     
Sbjct: 131 VLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVYSPPEWIRYHRYH 187
Query: 122 MK-ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
            + A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 188 GRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSXECQHLI 235

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP NI++    +    KI D G AK L  DQ    T   GT  Y+
Sbjct: 136 YLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL--DQGELCTEFVGTLQYL 190
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIV 137
           APE  +    ++  + +++G +  E +
Sbjct: 191 APELLEQKKYTVTVDYWSFGTLAFECI 217

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP----DQTRTFTLIRGTRGY 109
           YLH++    I+H DIKP N+L+    T KIS  G+A+ L P    D  RT    +G+  +
Sbjct: 124 YLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRT---SQGSPAF 177
Query: 110 MAPEWSK--NTPISMKANVFNYGVVLLEIVCCRRNMEID 146
             PE +   +T    K ++++ GV L  I       E D
Sbjct: 178 QPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+TL  GT  Y+APE
Sbjct: 142 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWTLC-GTPEYLAPE 194
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 195 IILSKGYNKAVDWWALGVLIYEMAA 219

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH +    +IH DIK  +IL+      K+SDFG    +  D  +   L+ GT  +MAPE
Sbjct: 156 YLHAQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLV-GTPYWMAPE 211
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
               +  + + ++++ G++++E+V
Sbjct: 212 VISRSLYATEVDIWSLGIMVIEMV 235

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL-AKLLMPDQTRTFTLIRGTRGYMAP 112
           +LH++    IIH D+K  N+LM      +++DFG+ AK L   Q R   +  GT  +MAP
Sbjct: 132 FLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFI--GTPYWMAP 186
Query: 113 -----EWSKNTPISMKANVFNYGVVLLEIV 137
                E  K+TP   KA++++ G+ L+E+ 
Sbjct: 187 EVVMCETMKDTPYDYKADIWSLGITLIEMA 216

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R   L+ GT  +MAPE     P   
Sbjct: 137 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV-GTPYWMAPELISRLPYGP 195
Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 196 EVDIWSLGIMVIEMV 210

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIK  +IL+      K+SDFG    +  +  R   L+ GT  +MAPE     P   
Sbjct: 141 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV-GTPYWMAPELISRLPYGP 199
Query: 123 KANVFNYGVVLLEIV 137
           + ++++ G++++E+V
Sbjct: 200 EVDIWSLGIMVIEMV 214

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 136 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 192
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             TR Y APE           ++++ G ++ E+VC
Sbjct: 193 --TRYYRAPEVILGMGYKENVDLWSVGCIMGEMVC 225

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D++  NIL+ E    K++DFGL +L+  ++   +T  +G +    + APE +     
Sbjct: 303 VHRDLRAANILVGENLVCKVADFGLGRLIEDNE---YTARQGAKFPIKWTAPEAALYGRF 359
Query: 121 SMKANVFNYGVVLLEIVCCRR 141
           ++K++V+++G++L E+    R
Sbjct: 360 TIKSDVWSFGILLTELTTKGR 380

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 56  HNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW- 114
           H   +  +IH D+KP N+L++     K  DFG++  L+ D  +      G + Y APE  
Sbjct: 151 HLHSKLSVIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKDID--AGCKPYXAPERI 208
Query: 115 ---SKNTPISMKANVFNYGVVLLEIVCCR 140
                    S+K+++++ G+  +E+   R
Sbjct: 209 NPELNQKGYSVKSDIWSLGITXIELAILR 237

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  L   D T  F    GT  Y+A
Sbjct: 136 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFC---GTPNYIA 189
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           PE  +        + +  GV++ E++  R   +I
Sbjct: 190 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 223

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 125 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 181
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             TR Y APE           ++++ G ++ E+VC
Sbjct: 182 --TRYYRAPEVILGMGYKENVDLWSVGCIMGEMVC 214

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGL-AKLLMPDQTRTFTLIRGTRGYMAP 112
           +LH++    IIH D+K  N+LM      +++DFG+ AK L   Q R   +  GT  +MAP
Sbjct: 124 FLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFI--GTPYWMAP 178
Query: 113 -----EWSKNTPISMKANVFNYGVVLLEIV 137
                E  K+TP   KA++++ G+ L+E+ 
Sbjct: 179 EVVMCETMKDTPYDYKADIWSLGITLIEMA 208

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 213 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 271
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 272 IQSDVWSFGVLLWEI 286

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ ++    D     T  +    +MA E  +   
Sbjct: 155 FVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQTQK 214
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 215 FTTKSDVWSFGVLLWELM 232

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 144 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIXETDXXRKGGKGLLPVRWMSPESLKD 199
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 200 GVFTTYSDVWSFGVVLWEIAT 220

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFGLAK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGLAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 220 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 278
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 279 IQSDVWSFGVLLWEI 293

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 215 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 273
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 274 IQSDVWSFGVLLWEI 288

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 153 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIXETDXXRKGGKGLLPVRWMSPESLKD 208
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 209 GVFTTYSDVWSFGVVLWEIAT 229

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 222 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 280
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 281 IQSDVWSFGVLLWEI 295

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  L   D T  F    GT  Y+A
Sbjct: 121 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFC---GTPNYIA 174
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           PE  +        + +  GV++ E++  R   +I
Sbjct: 175 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 208

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 170 IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD-ARLPLKWMAPETIFDRVYT 228
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 229 IQSDVWSFGVLLWEI 243

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 170 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGD-ARLPLKWMAPETIFDRVYT 228
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 229 IQSDVWSFGVLLWEI 243

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH  C   I+H D+KP NIL+    T K++DFGLA++          ++  T  Y APE
Sbjct: 127 FLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDPVVV--TLWYRAPE 181
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 182 VLLQSTYATPVDMWSVGCIFAEM 204

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 166 IHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 224
Query: 122 MKANVFNYGVVLLEIVC 138
           ++++V+++GV+L EI  
Sbjct: 225 IQSDVWSFGVLLWEIFS 241

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ DIK  NIL+D      ++DFGL+K  + D+T       GT  YMAP+  +      
Sbjct: 180 IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGH 239
Query: 123 KANV--FNYGVVLLEIVCCRRNMEIDPSK 149
              V  ++ GV++ E++       +D  K
Sbjct: 240 DKAVDWWSLGVLMYELLTGASPFTVDGEK 268

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 207 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 265
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 266 IQSDVWSFGVLLWEI 280

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NI+++     K++DFGL K  + D T T T   GT  YMAPE    +  + 
Sbjct: 142 IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFC-GTIEYMAPEILMRSGHNR 200
Query: 123 KANVFNYGVVLLEIVC 138
             + ++ G ++ +++ 
Sbjct: 201 AVDWWSLGALMYDMLT 216

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           I+H D+KP NIL+D+    ++SDFG +  L P +      + GT GY+APE
Sbjct: 221 IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE--KLRELCGTPGYLAPE 269

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 54  YLHNECEA-------PIIHCDIKPHNILMD--EFWTAKISDFGLAKLLMPDQTRTFTLIR 104
           Y+   CE         I+H DIKP NI+ +  +  + KI DFGLA  L PD+    T   
Sbjct: 154 YMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTT-- 211
Query: 105 GTRGYMAPEWSKNTPISMKANVFNYGVV 132
            T  + APE     P+    +++  GV+
Sbjct: 212 ATAEFAAPEIVDREPVGFYTDMWAIGVL 239

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 170 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 228
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 229 IQSDVWSFGVLLWEI 243

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 161 IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD-ARLPLKWMAPETIFDRVYT 219
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 220 IQSDVWSFGVLLWEI 234

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 161 IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD-ARLPLKWMAPETIFDRVYT 219
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 220 IQSDVWSFGVLLWEI 234

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 172 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 230
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 231 IQSDVWSFGVLLWEI 245

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK--LLMPDQTRTFTLIRGTRGYMA 111
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  L   D T  F    GT  Y+A
Sbjct: 125 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFC---GTPNYIA 178
Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI 145
           PE  +        + +  GV++ E++  R   +I
Sbjct: 179 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 212

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 161 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 219
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 220 IQSDVWSFGVLLWEI 234

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 170 IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD-ARLPLKWMAPETIFDRVYT 228
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 229 IQSDVWSFGVLLWEI 243

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 153 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQTQK 212
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 213 FTTKSDVWSFGVLLWELM 230

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 161 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 219
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 220 IQSDVWSFGVLLWEI 234

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 170 IHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD-ARLPLKWMAPETIFDRVYT 228
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 229 IQSDVWSFGVLLWEI 243

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            IH D+   N L+D     K+SDFG+ + ++ DQ  +    +    + APE       S 
Sbjct: 125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSS 184
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           K++V+ +G+++ E+    + M  D     E+V
Sbjct: 185 KSDVWAFGILMWEVFSLGK-MPYDLYTNSEVV 215

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 146 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 201
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 202 GVFTTYSDVWSFGVVLWEIAT 222

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 152 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 207
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 208 GVFTTYSDVWSFGVVLWEIAT 228

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 159 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 214
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 215 GVFTTYSDVWSFGVVLWEIAT 235

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 150 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 205
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 206 GVFTTYSDVWSFGVVLWEIAT 226

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIKVADFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 153 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 208
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 209 GVFTTYSDVWSFGVVLWEIAT 229

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM--PDQTRTFTLIRGTRGYMAPEWSKNTPIS 121
           IH D+   NIL+ E    KI DFGLA+ +   PD  R     R    +MAPE   +   +
Sbjct: 166 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD-ARLPLKWMAPETIFDRVYT 224
Query: 122 MKANVFNYGVVLLEI 136
           ++++V+++GV+L EI
Sbjct: 225 IQSDVWSFGVLLWEI 239

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           ++H D+KP N+L+    +    K++DFGLA  +  DQ   F    GT GY++PE  +   
Sbjct: 124 VVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFA-GTPGYLSPEVLRKEA 182
Query: 120 ISMKANVFNYGVVL 133
                +++  GV+L
Sbjct: 183 YGKPVDIWACGVIL 196

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 159 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 214
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 215 GVFTTYSDVWSFGVVLWEIAT 235

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 181 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 236
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 237 GVFTTYSDVWSFGVVLWEIAT 257

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 152 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 207
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 208 GVFTTYSDVWSFGVVLWEIAT 228

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+DE    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 143 YLHS---LDLIYRDLKPENLLIDEQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 195
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 196 IILSKGYNKAVDWWALGVLIYEMAA 220

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+    +   T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE       +   ++++ G ++ E+V
Sbjct: 188 --TRYYRAPEVILGMGYAANVDIWSVGCIMGELV 219

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 213
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 214 FTTKSDVWSFGVLLWELM 231

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++ E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 149 FVHRDLAARNCMVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 204
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 205 GVFTTYSDVWSFGVVLWEIAT 225

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 151 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 210
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 211 FTTKSDVWSFGVLLWELM 228

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 153 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 212
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 213 FTTKSDVWSFGVLLWELM 230

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 213
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 214 FTTKSDVWSFGVLLWELM 231

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 152 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 211
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 212 FTTKSDVWSFGVLLWELM 229

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 146 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 205
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 206 FTTKSDVWSFGVLLWELM 223

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 149 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 208
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 209 FTTKSDVWSFGVLLWELM 226

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 1   MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCN--VYLHNE 58
           +K KG  E +GE+  ++  +    G++  R         L  LL+  Q  C    YLH +
Sbjct: 73  VKYKGCCEDQGEKSVQLVMEYVPLGSL--RDYLPRHCVGLAQLLLFAQQICEGMAYLHAQ 130
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEWS 115
                IH  +   N+L+D     KI DFGLAK  +P+    + +         + APE  
Sbjct: 131 ---HYIHRALAARNVLLDNDRLVKIGDFGLAK-AVPEGHEYYRVREDGDSPVFWYAPECL 186
Query: 116 KNTPISMKANVFNYGVVLLEIV 137
           K       ++V+++GV L E++
Sbjct: 187 KECKFYYASDVWSFGVTLYELL 208

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 1   MKGKGNREIEGERGCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCN--VYLHNE 58
           +K KG  E +GE+  ++  +    G++  R         L  LL+  Q  C    YLH +
Sbjct: 74  VKYKGCCEDQGEKSVQLVMEYVPLGSL--RDYLPRHCVGLAQLLLFAQQICEGMAYLHAQ 131
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEWS 115
                IH  +   N+L+D     KI DFGLAK  +P+    + +         + APE  
Sbjct: 132 ---HYIHRALAARNVLLDNDRLVKIGDFGLAK-AVPEGHEYYRVREDGDSPVFWYAPECL 187
Query: 116 KNTPISMKANVFNYGVVLLEIV 137
           K       ++V+++GV L E++
Sbjct: 188 KECKFYYASDVWSFGVTLYELL 209

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR--GYMAPEWSKN 117
           E   +H ++   N+L+     AKISDFGL+K L  D +       G     + APE    
Sbjct: 454 EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF 513
Query: 118 TPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
              S +++V++YGV + E +   +        PE + FI
Sbjct: 514 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFI 552

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLA-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 169 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 221
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +M  ++++ G ++ E++  R
Sbjct: 222 IMLNWMHYNMTVDIWSVGCIMAELLTGR 249

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL--MPDQTRTF-TLIRGTRGYM 110
           Y+H+   A +IH D+KP N+L++E    KI DFG+A+ L   P + + F T    TR Y 
Sbjct: 174 YMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYR 230
Query: 111 APEWSKNTPISMKA-NVFNYGVVLLEIVCCRR 141
           APE   +     +A ++++ G +  E++  R+
Sbjct: 231 APELMLSLHEYTQAIDLWSVGCIFGEMLARRQ 262

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+K  N+++D     KI+DFG+ K  + D   T     GT  Y+APE     P   
Sbjct: 463 IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKXFC-GTPDYIAPEIIAYQPYGK 521
Query: 123 KANVFNYGVVLLEIVCCRRNME 144
             + + +GV+L E++  +   E
Sbjct: 522 SVDWWAFGVLLYEMLAGQAPFE 543

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL--MPDQTRTF-TLIRGTRGYM 110
           Y+H+   A +IH D+KP N+L++E    KI DFG+A+ L   P + + F T    TR Y 
Sbjct: 173 YMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYR 229
Query: 111 APEWSKNTPISMKA-NVFNYGVVLLEIVCCRR 141
           APE   +     +A ++++ G +  E++  R+
Sbjct: 230 APELMLSLHEYTQAIDLWSVGCIFGEMLARRQ 261

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 172 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 231
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 232 FTTKSDVWSFGVLLWELM 249

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           ++H D+KP N+L+    +    K++DFGLA  +  +Q   F    GT GY++PE  +  P
Sbjct: 142 VVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFA-GTPGYLSPEVLRKDP 200
Query: 120 ISMKANVFNYGVVL 133
                +++  GV+L
Sbjct: 201 YGKPVDLWACGVIL 214

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH D++  NIL+      KI+DFGLA++        F +      + APE       ++K
Sbjct: 300 IHRDLRAANILVSASLVCKIADFGLARV-----GAKFPI-----KWTAPEAINFGSFTIK 349
Query: 124 ANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           ++V+++G++L+EIV   R      S PE I  +   Y+
Sbjct: 350 SDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR 387

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +   +  +     G +    +MA E  +   
Sbjct: 173 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 232
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 233 FTTKSDVWSFGVLLWELM 250

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+K  N+++D     KI+DFG+ K  + D   T     GT  Y+APE     P   
Sbjct: 142 IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKXFC-GTPDYIAPEIIAYQPYGK 200
Query: 123 KANVFNYGVVLLEIVCCRRNME 144
             + + +GV+L E++  +   E
Sbjct: 201 SVDWWAFGVLLYEMLAGQAPFE 222

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPAF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXL-XGTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +     D     T  +    +MA E  +   
Sbjct: 155 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 214
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 215 FTTKSDVWSFGVLLWELM 232

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T          GY+A  
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT----------GYVATR 186
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
           W +   I + A  +N  V +  + C
Sbjct: 187 WYRAPEIMLNAMHYNQTVDIWSVGC 211

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +     D     T  +    +MA E  +   
Sbjct: 213 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 272
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 273 FTTKSDVWSFGVLLWELM 290

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +     D     T  +    +MA E  +   
Sbjct: 152 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 211
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 212 FTTKSDVWSFGVLLWELM 229

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 156 YLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLC-GTPNYIAPE 211
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + +V++ G ++  ++  +   E
Sbjct: 212 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 242

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +H DIKP NILMD     +++DFG    LM D T   ++  GT  Y++PE
Sbjct: 197 VHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPE 246

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +     D     T  +    +MA E  +   
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 213
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 214 FTTKSDVWSFGVLLWELM 231

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 154 YLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLC-GTPNYIAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + +V++ G ++  ++  +   E
Sbjct: 210 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 240

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            IH D+   NIL+ E + AKI+DFGL++    +     T+ R    +MA E    +  + 
Sbjct: 153 FIHRDLAARNILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPVRWMAIESLNYSVYTT 210
Query: 123 KANVFNYGVVLLEIV 137
            ++V++YGV+L EIV
Sbjct: 211 NSDVWSYGVLLWEIV 225

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            IH D+   NIL+ E + AKI+DFGL++    +     T+ R    +MA E    +  + 
Sbjct: 163 FIHRDLAARNILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPVRWMAIESLNYSVYTT 220
Query: 123 KANVFNYGVVLLEIV 137
            ++V++YGV+L EIV
Sbjct: 221 NSDVWSYGVLLWEIV 235

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           I+H ++KP N+L+    +    K++DFGLA  +  + +  +    GT GY++PE  K  P
Sbjct: 149 IVHRNLKPENLLLASKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDP 206
Query: 120 ISMKANVFNYGVVL 133
            S   +++  GV+L
Sbjct: 207 YSKPVDIWACGVIL 220

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +     D     T  +    +MA E  +   
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 213
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 214 FTTKSDVWSFGVLLWELM 231

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 130 YLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLC-GTPNYIAPE 185
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + +V++ G ++  ++  +   E
Sbjct: 186 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 216

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP---DQTRTFTLIRGTRGYMAPEWSKNTP 119
            +H D+   N ++DE +T K++DFGLA+ +     D     T  +    +MA E  +   
Sbjct: 159 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 218
Query: 120 ISMKANVFNYGVVLLEIV 137
            + K++V+++GV+L E++
Sbjct: 219 FTTKSDVWSFGVLLWELM 236

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN     +IH D+K  N+ +++    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 141 YLHNN---RVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKDLC-GTPNYIAPE 196
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + ++++ G +L  ++  +   E
Sbjct: 197 VLCKKGHSFEVDIWSLGCILYTLLVGKPPFE 227

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    +++DFGLAK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIQVTDFGLAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTR---GYMAPEW 114
            E   +H D+   NIL++     K+SDFGL++ L  + +  T+T   G +    + APE 
Sbjct: 133 AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEA 192
Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
                 +  ++ ++YG+V+ E++        D S  + I  I   Y+
Sbjct: 193 IAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYR 239

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           IH DIK  NIL++    AK++DFG+A  L     +   +I GT  +MAPE  +    +  
Sbjct: 147 IHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKRNXVI-GTPFWMAPEVIQEIGYNCV 205
Query: 124 ANVFNYGVVLLEIV 137
           A++++ G+  +E+ 
Sbjct: 206 ADIWSLGITAIEMA 219

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN     +IH D+K  N+ +++    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 157 YLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKXLC-GTPNYIAPE 212
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + ++++ G +L  ++  +   E
Sbjct: 213 VLCKKGHSFEVDIWSLGCILYTLLVGKPPFE 243

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    K++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           I+H ++KP N+L+    +    K++DFGLA  +  + +  +    GT GY++PE  K  P
Sbjct: 126 IVHRNLKPENLLLASKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDP 183
Query: 120 ISMKANVFNYGVVL 133
            S   +++  GV+L
Sbjct: 184 YSKPVDIWACGVIL 197

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+           ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             TR Y APE           ++++ G ++ E+VC
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVC 220

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMAPEWSKN 117
           E+  +H D+   N+L+     AKISDFGL+K L  D+   +  T  +    + APE    
Sbjct: 488 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 547
Query: 118 TPISMKANVFNYGVVLLE 135
              S K++V+++GV++ E
Sbjct: 548 YKFSSKSDVWSFGVLMWE 565

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           I+H ++KP N+L+    +    K++DFGLA  +  + +  +    GT GY++PE  K  P
Sbjct: 126 IVHRNLKPENLLLASKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDP 183
Query: 120 ISMKANVFNYGVVL 133
            S   +++  GV+L
Sbjct: 184 YSKPVDIWACGVIL 197

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN     +IH D+K  N+ +++    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 157 YLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKDLC-GTPNYIAPE 212
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
                  S + ++++ G +L  ++  +   E
Sbjct: 213 VLCKKGHSFEVDIWSLGCILYTLLVGKPPFE 243

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           I+H ++KP N+L+    +    K++DFGLA  +  + +  +    GT GY++PE  K  P
Sbjct: 125 IVHRNLKPENLLLASKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDP 182
Query: 120 ISMKANVFNYGVVL 133
            S   +++  GV+L
Sbjct: 183 YSKPVDIWACGVIL 196

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 50  SCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           S  ++LH++    II+ D+K  N+L+D     K++DFG+ K  + +   T T   GT  Y
Sbjct: 135 SALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFC-GTPDY 190
Query: 110 MAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID 146
           +APE  +        + +  GV+L E++C     E +
Sbjct: 191 IAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE 227

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 139 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 198
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 199 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 228

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 177 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 229
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 230 IILSKGYNKAVDWWALGVLIYEMAA 254

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 139 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 198
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 199 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 228

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I++ D+KP NIL+D      ++DFGL K  +   + T T   GT  Y+APE
Sbjct: 154 YLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                P     + +  G VL E++
Sbjct: 210 VLHKQPYDRTVDWWCLGAVLYEML 233

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL---MPDQTRTFTL-----IRGTRGYM 110
            E   +H D+   NIL++     K+SDFGL++ L     D T T +L     IR T    
Sbjct: 135 AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWT---- 190
Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           APE       +  ++ ++YG+V+ E++        D S  + I  I   Y+
Sbjct: 191 APEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYR 241

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 141 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 200
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 201 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 230

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 151 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 203
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 204 IILSKGYNKAVDWWALGVLIYEMAA 228

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 143 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 202
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 203 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 232

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 177 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 229
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 230 IILSKGYNKAVDWWALGVLIYEMAA 254

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 136 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 195
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 196 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 225

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N  + E +T KI DFG+ +    D   T    +G +G     +M+PE  K+
Sbjct: 146 FVHRDLAARNCXVAEDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMSPESLKD 201
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++V+++GVVL EI  
Sbjct: 202 GVFTTYSDVWSFGVVLWEIAT 222

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPE 113
            E  ++H D+   NIL+ E    KISDFGL++    D     + ++ ++G     +MA E
Sbjct: 167 AEMSLVHRDLAARNILVAEGRKMKISDFGLSR----DVYEEDSXVKRSQGRIPVKWMAIE 222
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
              +   + +++V+++GV+L EIV    N    P  P E +F
Sbjct: 223 SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY--PGIPPERLF 262

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 134 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 193
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 194 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 223

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 135 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 194
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 195 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 224

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTR---GYMAPEWSKNTP 119
           +H  +   NIL++     K+SDFGL++ L  D +  T+T   G +    + APE  +   
Sbjct: 131 VHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRK 190
Query: 120 ISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
            +  ++V++YG+V+ E++        D +  + I  I   Y+
Sbjct: 191 FTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYR 232

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 157 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 209
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 210 IILSKGYNKAVDWWALGVLIYEMAA 234

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 142 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 201
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 202 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 231

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 136 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 195
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 196 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 225

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+
Sbjct: 151 FVHRDLAARNCMVAHDFTVKIGDFGMTR----DIYETAYYRKGGKGLLPVRWMAPESLKD 206
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++++++GVVL EI  
Sbjct: 207 GVFTTSSDMWSFGVVLWEITS 227

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 154 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 213
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 214 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 243

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 140 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 199
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 200 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 229

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPE 113
            E  ++H D+   NIL+ E    KISDFGL++    D     + ++ ++G     +MA E
Sbjct: 167 AEMKLVHRDLAARNILVAEGRKMKISDFGLSR----DVYEEDSYVKRSQGRIPVKWMAIE 222
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
              +   + +++V+++GV+L EIV    N    P  P E +F
Sbjct: 223 SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY--PGIPPERLF 262

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 167 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 226
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 227 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 256

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTP 119
            +H D+   N L+++    K+SDFGL++ ++ D+   +T  RG++    +  PE    + 
Sbjct: 126 FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE---YTSSRGSKFPVRWSPPEVLMYSK 182
Query: 120 ISMKANVFNYGVVLLEI 136
            S K++++ +GV++ EI
Sbjct: 183 FSSKSDIWAFGVLMWEI 199

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 139 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 198
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 199 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 228

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG--YMAPEWSKNTPIS 121
           IH D+   NIL++     KI DFGL K+L  D+        G     + APE    +  S
Sbjct: 154 IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFS 213
Query: 122 MKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           + ++V+++GVVL E+      +E   S P E +
Sbjct: 214 VASDVWSFGVVLYELFTY---IEKSKSPPAEFM 243

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+
Sbjct: 148 FVHRDLAARNCMVAHDFTVKIGDFGMTR----DIXETDXXRKGGKGLLPVRWMAPESLKD 203
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++++++GVVL EI  
Sbjct: 204 GVFTTSSDMWSFGVVLWEITS 224

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEWSKNTPI 120
           IH D+   NIL++     KI DFGL K+L P     F +         + APE    +  
Sbjct: 136 IHRDLATRNILVENENRVKIGDFGLTKVL-PQDKEFFKVKEPGESPIFWYAPESLTESKF 194
Query: 121 SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIV 154
           S+ ++V+++GVVL E+      +E   S P E +
Sbjct: 195 SVASDVWSFGVVLYELFTY---IEKSKSPPAEFM 225

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 149 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 201
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 202 IILSKGYNKAVDWWALGVLIYEMAA 226

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 149 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 201
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 202 IILSKGYNKAVDWWALGVLIYEMAA 226

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++  TR Y APE
Sbjct: 141 HLHS---AGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVV--TRYYRAPE 195
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                      ++++ GV++ E++
Sbjct: 196 VILGMGYKENVDIWSVGVIMGEMI 219

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    D+   F     TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-HTDDEMAGFV---ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+
Sbjct: 151 FVHRDLAARNCMVAHDFTVKIGDFGMTR----DIXETDXXRKGGKGLLPVRWMAPESLKD 206
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++++++GVVL EI  
Sbjct: 207 GVFTTSSDMWSFGVVLWEITS 227

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 147 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYV----ATRWYRAPE 199
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 200 IMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    D+   F     TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-HTDDEMAGFV---ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPE 113
            E  ++H D+   NIL+ E    KISDFGL++    D     + ++ ++G     +MA E
Sbjct: 167 AEMKLVHRDLAARNILVAEGRKMKISDFGLSR----DVYEEDSXVKRSQGRIPVKWMAIE 222
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVF 155
              +   + +++V+++GV+L EIV    N    P  P E +F
Sbjct: 223 SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY--PGIPPERLF 262

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+
Sbjct: 151 FVHRDLAARNCMVAHDFTVKIGDFGMTR----DIXETDXXRKGGKGLLPVRWMAPESLKD 206
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++++++GVVL EI  
Sbjct: 207 GVFTTSSDMWSFGVVLWEITS 227

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 63  IIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPI 120
           IIHCD+KP NIL+ +   +  K+ DFG +     +  R +T I+ +R Y APE       
Sbjct: 221 IIHCDLKPENILLKQQGRSGIKVIDFGSSCY---EHQRVYTXIQ-SRFYRAPEVILGARY 276
Query: 121 SMKANVFNYGVVLLEIV 137
            M  ++++ G +L E++
Sbjct: 277 GMPIDMWSLGCILAELL 293

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+
Sbjct: 150 FVHRDLAARNCMVAHDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMAPESLKD 205
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++++++GVVL EI  
Sbjct: 206 GVFTTSSDMWSFGVVLWEITS 226

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 147 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYV----ATRWYRAPE 199
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 200 IMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 63  IIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPI 120
           IIHCD+KP NIL+ +   +  K+ DFG +     +  R +T I+ +R Y APE       
Sbjct: 221 IIHCDLKPENILLKQQGRSGIKVIDFGSSCY---EHQRVYTXIQ-SRFYRAPEVILGARY 276
Query: 121 SMKANVFNYGVVLLEIV 137
            M  ++++ G +L E++
Sbjct: 277 GMPIDMWSLGCILAELL 293

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 147 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYV----ATRWYRAPE 199
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 200 IMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++  TR Y APE
Sbjct: 141 HLHS---AGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVV--TRYYRAPE 195
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                      ++++ GV++ E++
Sbjct: 196 VILGMGYKENVDIWSVGVIMGEMI 219

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+    +   T  ++
Sbjct: 129 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVV 185
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 186 --TRYYRAPEVILGMGYKENVDIWSVGCIMGELV 217

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 63  IIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW-SKNTPI 120
           + H DIKPHN+L++E   T K+ DFG AK L P +     +   +R Y APE    N   
Sbjct: 152 VCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYIC--SRYYRAPELIFGNQHY 209
Query: 121 SMKANVFNYGVVLLEIV 137
           +   ++++ G +  E++
Sbjct: 210 TTAVDIWSVGCIFAEMM 226

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+           ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             TR Y APE           ++++ G ++ E+VC
Sbjct: 188 --TRYYRAPEVILGMGYKENVDLWSVGCIMGEMVC 220

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   +  T+TL  GT  Y+APE
Sbjct: 177 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGATWTLC-GTPEYLAPE 229
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 230 IILSKGYNKAVDWWALGVLIYEMAA 254

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 172 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVKWMAPEALFDRIYTH 231
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 232 QSDVWSFGVLLWEI 245

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT----AKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    D+   F     TR Y APE
Sbjct: 136 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-HTDDEMAGFV---ATRWYRAPE 188
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 189 IMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH++    I++ D+K  NIL+D+    KI+DFG+ K  M    +T     GT  Y+APE
Sbjct: 133 FLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT-NXFCGTPDYIAPE 188
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                  +   + +++GV+L E++
Sbjct: 189 ILLGQKYNHSVDWWSFGVLLYEML 212

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT-AKISDFGLAKLLMPD----QTRTFTLIRGTRG 108
           YLH      I+H D+K  N+L+    + A + DFG A  L PD       T   I GT  
Sbjct: 165 YLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTET 221
Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           +MAPE     P   K ++++   ++L ++
Sbjct: 222 HMAPEVVMGKPCDAKVDIWSSCCMMLHML 250

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK----ISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +    K    I DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK----ISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +    K    I DFGLA  +  D    F  I GT  +
Sbjct: 128 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 182
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 183 VAPEIVNYEPLGLEADMWSIGVI 205

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK----ISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +    K    I DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 151 YIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYV----ATRWYRAPE 203
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 204 IMLNWMHYNQTVDIWSVGCIMAELLTGR 231

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEXIEGRXHDE 190
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 191 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 234

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N ++   +T KI DFG+ +    D   T    +G +G     +MAPE  K+
Sbjct: 151 FVHRDLAARNCMVAHDFTVKIGDFGMTR----DIYETDYYRKGGKGLLPVRWMAPESLKD 206
Query: 118 TPISMKANVFNYGVVLLEIVC 138
              +  ++++++GVVL EI  
Sbjct: 207 GVFTTSSDMWSFGVVLWEITS 227

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 145 YIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYV----ATRWYRAPE 197
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 198 IMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK----ISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +    K    I DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 145 YIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYV----ATRWYRAPE 197
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 198 IMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           II+ D+KP NI+++     K++DFGL K  + D T T     GT  YMAPE    +  + 
Sbjct: 142 IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHXFC-GTIEYMAPEILMRSGHNR 200
Query: 123 KANVFNYGVVLLEIVC 138
             + ++ G ++ +++ 
Sbjct: 201 AVDWWSLGALMYDMLT 216

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK----ISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +    K    I DFGLA  +  D    F  I GT  +
Sbjct: 129 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 183
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVI 206

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 155 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 211
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 212 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 255

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT-AKISDFGLAKLLMPD----QTRTFTLIRGTRG 108
           YLH      I+H D+K  N+L+    + A + DFG A  L PD       T   I GT  
Sbjct: 181 YLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTET 237
Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           +MAPE     P   K ++++   ++L ++
Sbjct: 238 HMAPEVVMGKPCDAKVDIWSSCCMMLHML 266

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 157 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 216
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 217 QSDVWSFGVLLWEI 230

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK----ISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH+     I H D+KP NI++ +    K    I DFGLA  +  D    F  I GT  +
Sbjct: 128 YLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEF 182
Query: 110 MAPEWSKNTPISMKANVFNYGVV 132
           +APE     P+ ++A++++ GV+
Sbjct: 183 VAPEIVNYEPLGLEADMWSIGVI 205

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           I+H D+KP NIL+D+    K++DFG +  L P +      + GT  Y+APE
Sbjct: 145 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE--KLRSVCGTPSYLAPE 193

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 142 YIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYV----ATRWYRAPE 194
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 195 IMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 161 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 220
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 221 QSDVWSFGVLLWEI 234

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 172 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 231
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 232 QSDVWSFGVLLWEI 245

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 164 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 223
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 224 QSDVWSFGVLLWEI 237

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 172 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 231
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 232 QSDVWSFGVLLWEI 245

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 165 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 224
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 225 QSDVWSFGVLLWEI 238

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 146 YIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYV----ATRWYRAPE 198
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 199 IMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 172 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 231
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 232 QSDVWSFGVLLWEI 245

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 146 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 202
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 203 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 246

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT-AKISDFGLAKLLMPD----QTRTFTLIRGTRG 108
           YLH      I+H D+K  N+L+    + A + DFG A  L PD       T   I GT  
Sbjct: 179 YLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTET 235
Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           +MAPE     P   K ++++   ++L ++
Sbjct: 236 HMAPEVVMGKPCDAKVDIWSSCCMMLHML 264

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLMIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAA 233

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 129 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 183
Query: 111 APE 113
           APE
Sbjct: 184 APE 186

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 190
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 191 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 234

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 128 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 182
Query: 111 APE 113
           APE
Sbjct: 183 APE 185

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 135 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 189
Query: 111 APE 113
           APE
Sbjct: 190 APE 192

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG +    P   R  T + GT  Y+ PE  +      
Sbjct: 130 VIHRDIKPENLLLGSAGELKIADFGWS-CHAPSSRR--TTLSGTLDYLPPEMIEGRMHDE 186
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 187 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 230

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 129 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 183
Query: 111 APE 113
           APE
Sbjct: 184 APE 186

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 129 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 183
Query: 111 APE 113
           APE
Sbjct: 184 APE 186

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH++    I++ D+K  NIL+D+    KI+DFG+ K  M    +T     GT  Y+APE
Sbjct: 134 FLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFC-GTPDYIAPE 189
Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                  +   + +++GV+L E++
Sbjct: 190 ILLGQKYNHSVDWWSFGVLLYEML 213

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     ++H D+KP NIL+      K++DFGLA++       T  ++  T  Y APE
Sbjct: 135 FLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV--TLWYRAPE 189
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 190 VLLQSSYATPVDLWSVGCIFAEM 212

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 169 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 225
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 226 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 257

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ ++  
Sbjct: 209 IILSKGYNKAVDWWALGVLIYQMAA 233

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           I+H D+KP NIL+D+    K++DFG +  L P +      + GT  Y+APE
Sbjct: 145 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE--KLREVCGTPSYLAPE 193

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    +I DFGLA+    D+  T        GY+A  
Sbjct: 146 YIHS---AGIIHRDLKPSNVAVNEDSELRILDFGLAR--QADEEMT--------GYVATR 192
Query: 114 WSKNTPISMKANVFNYGVVLLEIVCC 139
           W +   I +    +N  V +  + C 
Sbjct: 193 WYRAPEIMLNWMHYNQTVDIWSVGCI 218

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    +I DFGLA+    D+  T        GY+A  
Sbjct: 146 YIHS---AGIIHRDLKPSNVAVNEDSELRILDFGLAR--QADEEMT--------GYVATR 192
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
           W +   I +    +N  V +  + C
Sbjct: 193 WYRAPEIMLNWMHYNQTVDIWSVGC 217

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           I+H D+KP NIL+D+    K++DFG +  L P +      + GT  Y+APE
Sbjct: 132 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE--KLREVCGTPSYLAPE 180

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 152 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 204
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 205 IMLNWMHYNQTVDIWSVGCIMAELLTGR 232

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 152 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 204
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 205 IMLNWMHYNQTVDIWSVGCIMAELLTGR 232

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+++D+    +++DFG AK +   + RT+ L  GT  Y+APE
Sbjct: 156 YLHS---LDLIYRDLKPENLIIDQQGYIQVTDFGFAKRV---KGRTWXLC-GTPEYLAPE 208
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
              +   +   + +  GV++ E+  
Sbjct: 209 IIISKGYNKAVDWWALGVLIYEMAA 233

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 213 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 272
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV+L EI
Sbjct: 273 QSDVWSFGVLLWEI 286

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 151 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 203
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 204 IMLNWMHYNQTVDIWSVGCIMAELLTGR 231

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 159 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 211
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 212 IMLNWMHYNQTVDIWSVGCIMAELLTGR 239

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 146 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 198
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 199 IMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 190
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 191 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 234

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 152 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 204
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 205 IMLNWMHYNQTVDIWSVGCIMAELLTGR 232

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 160 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 212
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 213 IMLNWMHYNQTVDIWSVGCIMAELLTGR 240

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     ++H D+KP NIL+      K++DFGLA++       T  ++  T  Y APE
Sbjct: 135 FLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV--TLWYRAPE 189
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 190 VLLQSSYATPVDLWSVGCIFAEM 212

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGXV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 163 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 215
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 216 IMLNWMHYNQTVDIWSVGCIMAELLTGR 243

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 145 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 197
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 198 IMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 139 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 191
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 192 IMLNWMHYNQTVDIWSVGCIMAELLTGR 219

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 160 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 212
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 213 IMLNWMHYNQTVDIWSVGCIMAELLTGR 240

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 159 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 211
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 212 IMLNWMHYNQTVDIWSVGCIMAELLTGR 239

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 132 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 188
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 189 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 220

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 188
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 189 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 232

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 142 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 194
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 195 IMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     ++H D+KP NIL+      K++DFGLA++       T  ++  T  Y APE
Sbjct: 135 FLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV--TLWYRAPE 189
Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
               +  +   ++++ G +  E+
Sbjct: 190 VLLQSSYATPVDLWSVGCIFAEM 212

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 142 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 194
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 195 IMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 185
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 186 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 229

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    D+   +     TR Y APE
Sbjct: 163 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR-HTDDEMXGYV---ATRWYRAPE 215
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 216 IMLNWMHYNQTVDIWSVGCIMAELLTGR 243

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 150 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 202
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 203 IMLNWMHYNQTVDIWSVGCIMAELLTGR 230

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 142 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 194
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 195 IMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 147 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 199
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 200 IMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 132 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 188
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 189 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 220

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 24  FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWT 80
           F  +V +    E+++   +  IL       YLH   E  I+H D+KP N+L         
Sbjct: 136 FDRIVEKGYYSERDAADAVKQIL---EAVAYLH---ENGIVHRDLKPENLLYATPAPDAP 189
Query: 81  AKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
            KI+DFGL+K++  +       + GT GY APE  +      + ++++ G++   ++C
Sbjct: 190 LKIADFGLSKIV--EHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLC 245

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            IH ++   NIL+ E + AKI+DFGL++    +     T+ R    +MA E    +  + 
Sbjct: 160 FIHRNLAARNILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPVRWMAIESLNYSVYTT 217
Query: 123 KANVFNYGVVLLEIV 137
            ++V++YGV+L EIV
Sbjct: 218 NSDVWSYGVLLWEIV 232

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   NIL+      KI DFGLA+ +  D      +++G       +MAPE   N  
Sbjct: 190 IHRDLAARNILLTHGRITKICDFGLARHIKNDSNY---VVKGNARLPVKWMAPESIFNCV 246
Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG+ L E+
Sbjct: 247 YTFESDVWSYGIFLWEL 263

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 133 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 189
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 190 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 233

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 146 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 198
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 199 IMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 169 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 225
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 226 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 257

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 145 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 197
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 198 IMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   R  T + GT  Y+ PE  +      
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRR--TXLCGTLDYLPPEMIEGRMHDE 185
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 186 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 229

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 140 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 192
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 193 IMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 138 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 190
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 191 IMLNWMHYNQTVDIWSVGCIMAELLTGR 218

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 188
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 189 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 232

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 146 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 198
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 199 IMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 132 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 188
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 189 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 220

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 137 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 189
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 190 IMLNWMHYNQTVDIWSVGCIMAELLTGR 217

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 128 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 184
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 185 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 228

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 137 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 189
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 190 IMLNWMHYNQTVDIWSVGCIMAELLTGR 217

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR-GTRGYMAPEWSKNT--- 118
           I H D K  N+L+    TA ++DFGLA    P +    T  + GTR YMAPE  +     
Sbjct: 144 IAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINF 203
Query: 119 --PISMKANVFNYGVVLLEIV 137
                ++ +++  G+VL E+V
Sbjct: 204 QRDAFLRIDMYAMGLVLWELV 224

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 136 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 188
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 189 IMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   NIL+      KI DFGLA+ +  D      +++G       +MAPE   N  
Sbjct: 183 IHRDLAARNILLTHGRITKICDFGLARDIKNDSNY---VVKGNARLPVKWMAPESIFNCV 239
Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG+ L E+
Sbjct: 240 YTFESDVWSYGIFLWEL 256

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 130 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 186
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 187 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 218

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 124 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 180
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 181 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 212

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   R    + GT  Y+ PE  +      
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRR--XXLXGTLDYLPPEMIEGRMHDE 190
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 191 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 234

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 136 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 188
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 189 IMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 254 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 308
Query: 111 APE 113
           APE
Sbjct: 309 APE 311

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 125 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 181
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 182 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 213

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 125 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 181
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E+V
Sbjct: 182 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 213

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 63  IIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTP 119
           ++H ++KP N+L+    +    K++DFGLA  +  +Q   F    GT GY++PE  +  P
Sbjct: 131 VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFA-GTPGYLSPEVLRKDP 189
Query: 120 ISMKANVFNYGVVL 133
                +++  GV+L
Sbjct: 190 YGKPVDLWACGVIL 203

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  IIH D+KP N+L+   +E    KI+DFG +K+L   +T     + GT  Y+
Sbjct: 268 YLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTPTYL 322
Query: 111 APE 113
           APE
Sbjct: 323 APE 325

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    +I DFGLA+    D+  T        GY+A  
Sbjct: 138 YIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLAR--QADEEMT--------GYVATR 184
Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
           W +   I +    +N  V +  + C
Sbjct: 185 WYRAPEIMLNWMHYNQTVDIWSVGC 209

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV++ EI
Sbjct: 239 QSDVWSFGVLMWEI 252

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           +IH DIKP N+L+      KI+DFG + +  P   RT TL  GT  Y+ PE  +      
Sbjct: 126 VIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRT-TLC-GTLDYLPPEMIEGRMHDE 182
Query: 123 KANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFI 164
           K ++++ GV+  E +  +   E +  +   + I  +  T+  F+
Sbjct: 183 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 226

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPEWSKNTPISM 122
           IH D+   N+L+ E    KI+DFGLA+ +   D  +  T  R    +MAPE   +   + 
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 123 KANVFNYGVVLLEI 136
           +++V+++GV++ EI
Sbjct: 239 QSDVWSFGVLMWEI 252

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 136 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV----ATRWYRAPE 188
Query: 114 WSKN-TPISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 189 IMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPEVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   NIL+      KI DFGLA+ +  D      +++G       +MAPE   N  
Sbjct: 167 IHRDLAARNILLTHGRITKICDFGLARDIKNDSNY---VVKGNARLPVKWMAPESIFNCV 223
Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG+ L E+
Sbjct: 224 YTFESDVWSYGIFLWEL 240

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   NIL+      KI DFGLA+ +  D      +++G       +MAPE   N  
Sbjct: 185 IHRDLAARNILLTHGRITKICDFGLARDIKNDSNY---VVKGNARLPVKWMAPESIFNCV 241
Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG+ L E+
Sbjct: 242 YTFESDVWSYGIFLWEL 258

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR----GYMAPEWSKNTP 119
           IH D+   NIL+      KI DFGLA+ +  D      +++G       +MAPE   N  
Sbjct: 190 IHRDLAARNILLTHGRITKICDFGLARDIKNDSNY---VVKGNARLPVKWMAPESIFNCV 246
Query: 120 ISMKANVFNYGVVLLEI 136
            + +++V++YG+ L E+
Sbjct: 247 YTFESDVWSYGIFLWEL 263

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 45  ILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI 103
           +L Q  C + +LH+   A IIH D+KP NI++    T KI DFGLA+        T  ++
Sbjct: 131 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 187
Query: 104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
             TR Y APE           ++++ G ++ E++
Sbjct: 188 --TRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	8e-46
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-35
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	7e-33
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-26
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-26
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-26
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-25
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	7e-23
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-22
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-22
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	8e-22
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	9e-22
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-21
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-21
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-21
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-21
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-21
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-16
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	5e-16
2a19_B	284	Interferon-induced, double-stranded RNA-activated	7e-16
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-15
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-15
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-15
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-15
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-15
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	4e-15
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	4e-15
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	7e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	7e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-14
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	6e-14
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-14
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	7e-14
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-13
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-13
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-13
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-13
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-13
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	6e-13
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-13
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-12
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-12
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-12
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-12
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	3e-12
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	4e-12
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-12
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	6e-12
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	6e-12
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	8e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-12
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-11
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-11
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-11
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-11
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-11
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-11
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-11
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-11
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-11
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-11
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-11
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-11
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-11
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	3e-11
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-11
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-11
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-11
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	4e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	4e-11
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	5e-11
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-11
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	5e-11
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	6e-11
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-11
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-11
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-11
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	9e-11
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	9e-11
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	9e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	9e-11
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-10
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-10
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-10
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-10
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-10
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-10
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-10
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-10
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-10
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-10
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-10
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-10
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-10
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-10
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-10
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-10
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-10
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	5e-10
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	6e-10
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	7e-10
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	9e-10
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	9e-10
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-09
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-09
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-09
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-09
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-09
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-09
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	3e-09
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	5e-09
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	7e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	8e-09
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	8e-09
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	9e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	9e-09
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-08
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-08
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-08
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-08
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-08
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	4e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-08
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	5e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	5e-08
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	6e-08
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	6e-08
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	8e-08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-07
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-07
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-07
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-07
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	3e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	3e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-07
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	3e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-07
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-07
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-07
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-07
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-07
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	5e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-07
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	5e-07
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	6e-07
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-07
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	7e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	7e-07
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	7e-07
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-07
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-06
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-06
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-06
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-06
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-06
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-06
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-06
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	5e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	8e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	9e-06
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-05
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	1e-05
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-05
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-05
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-05
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-05
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-05
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-05
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	5e-05
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-04
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	1e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-04
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-04
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-04
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	2e-04
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	5e-04
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	5e-04
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	5e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	8e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  153 bits (388), Expect = 8e-46
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 25/165 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+ C+  IIH D+K  NIL+DE + A + DFGLAKL+    T   T +RGT G++APE
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPE 205

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLT---YKCFIDREFDK 170
           +      S K +VF YGV+LLE++  +R    D ++      + L         +++ + 
Sbjct: 206 YLSTGKSSEKTDVFGYGVMLLELITGQRA--FDLARLANDDDVMLLDWVKGLLKEKKLEA 263

Query: 171 LVH---GEEVNKKTLENMIK-----------------SVVMMLEG 195
           LV          + +E +I+                  VV MLEG
Sbjct: 264 LVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  125 bits (315), Expect = 5e-35
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 31/170 (18%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL-LMPDQTRTFTLIRGTRGYMAP 112
           YLH      IIH D+K  NIL+DE +  KI+DFG++K     DQT   T+++GT GY+ P
Sbjct: 154 YLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDP 210

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINL---TYKCFIDREFD 169
           E+     ++ K++V+++GVVL E++C R    I  S P E+V  NL     +   + + +
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSA--IVQSLPREMV--NLAEWAVESHNNGQLE 266

Query: 170 KLVH---GEEVNKKTLENMIK-----------------SVVMMLEGITDI 199
           ++V     +++  ++L                       V+  LE    +
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  118 bits (299), Expect = 7e-33
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 34/169 (20%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           +LH       IH DIK  NIL+DE +TAKISDFGLA+      QT   + I GT  YMAP
Sbjct: 148 FLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAP 204

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINL---TYKCFID-REF 168
           E  +   I+ K++++++GVVLLEI+       +D  +  +     L     +   + +  
Sbjct: 205 EALRGE-ITPKSDIYSFGVVLLEIITGLPA--VDEHREPQ----LLLDIKEEIEDEEKTI 257

Query: 169 DKLV--HGEEVNKKTLENMIK-----------------SVVMMLEGITD 198
           +  +     + +  ++E M                    V  +L+ +T 
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  102 bits (256), Expect = 2e-26
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT-AKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           YLH+     +IH D+KP N+L+    T  KI DFG A     D     T  +G+  +MAP
Sbjct: 117 YLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC----DIQTHMTNNKGSAAWMAP 172

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCR---RNMEIDPSKPEEIVFINL 158
           E  + +  S K +VF++G++L E++  R     +     +    V    
Sbjct: 173 EVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT 221

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  102 bits (256), Expect = 2e-26
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 54  YLHNECEA-------PIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR-G 105
           YLH +           I H DIK  N+L+    TA I+DFGLA      ++   T  + G
Sbjct: 136 YLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVG 195

Query: 106 TRGYMAPE-----WSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
           TR YMAPE      +      ++ +++  G+VL E+       +
Sbjct: 196 TRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD 239

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  101 bits (254), Expect = 3e-26
 Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLHN    PI+H ++K  N+L+D+ +T K+ DFGL++ L      +     GT  +MAPE
Sbjct: 152 YLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR-LKASTFLSSKSAAGTPEWMAPE 209

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++ P + K++V+++GV+L E+   +
Sbjct: 210 VLRDEPSNEKSDVYSFGVILWELATLQ 236

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 97.3 bits (243), Expect = 7e-25
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEF--------WTAKISDFGLAKLLMPDQTRTFTLIRG 105
           YLH+E   PIIH D+K  NIL+ +            KI+DFGLA+        +     G
Sbjct: 120 YLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAA---G 176

Query: 106 TRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCR 140
              +MAPE  + +  S  ++V++YGV+L E++   
Sbjct: 177 AYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGE 211

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 92.4 bits (230), Expect = 7e-23
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFW-----TAKISDFGLAKLLMPDQTRTFTLIRGTRG 108
           Y+ N    PI+H D++  NI +          AK++DFGL++        + + + G   
Sbjct: 137 YMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ----QSVHSVSGLLGNFQ 191

Query: 109 YMAPE--WSKNTPISMKANVFNYGVVLLEIVCCRR 141
           +MAPE   ++    + KA+ +++ ++L  I+    
Sbjct: 192 WMAPETIGAEEESYTEKADTYSFAMILYTILTGEG 226

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 91.3 bits (227), Expect = 3e-22
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 16/120 (13%)

Query: 54  YLHNE-----CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF---TLIRG 105
           +LH E      +  I H D+K  NIL+ +  T  I+D GLA   + D            G
Sbjct: 149 HLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVG 208

Query: 106 TRGYMAPE------WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLT 159
           T+ YM PE         +    + A+++++G++L E+   RR +     +  ++ + +L 
Sbjct: 209 TKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEV--ARRCVSGGIVEEYQLPYHDLV 266

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 89.2 bits (222), Expect = 8e-22
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH   E  I    +   ++++DE  TA+IS   +        +           ++APE
Sbjct: 126 FLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKF------SFQSPGRMYAPAWVAPE 178

Query: 114 WSKNTPISM---KANVFNYGVVLLEIVCCR 140
             +  P       A+++++ V+L E+V   
Sbjct: 179 ALQKKPEDTNRRSADMWSFAVLLWELVTRE 208

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 89.9 bits (223), Expect = 9e-22
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 54  YLHNE------CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-------QTRTF 100
           YLH E       +  I H D+   N+L+    T  ISDFGL+  L  +       +    
Sbjct: 126 YLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAA 185

Query: 101 TLIRGTRGYMAPE-------WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEIDPSKPEE 152
               GT  YMAPE                + +++  G++  EI   C      +     +
Sbjct: 186 ISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQ 245

Query: 153 IVFINLTYKCFIDREFDKLV 172
           + F           +   LV
Sbjct: 246 MAFQTEVGNHPTFEDMQVLV 265

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA        +  F  + G+  +MAP
Sbjct: 135 YLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191

Query: 113 E---WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E      + P S +++V+ +G+VL E++  +
Sbjct: 192 EVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 54  YLHNECEA-----PIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTLIRG 105
           +LH E         I H D+K  NIL+ +     I+D GLA +      +         G
Sbjct: 120 HLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVG 179

Query: 106 TRGYMAPEWSKNTPI------SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLT 159
           T+ YMAPE    T          + +++ +G+VL E+   RR +     +  +  F ++ 
Sbjct: 180 TKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEV--ARRMVSNGIVEDYKPPFYDVV 237

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 88.2 bits (219), Expect = 4e-21
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL----LMPDQTRTFTLIRGTRGY 109
           YLH +    I+H D+K  N+  D      I+DFGL  +        +     +  G   +
Sbjct: 145 YLHAK---GILHKDLKSKNVFYDN-GKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCH 200

Query: 110 MAPE---------WSKNTPISMKANVFNYGVVLLEIVCCR 140
           +APE              P S  ++VF  G +  E+    
Sbjct: 201 LAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHARE 240

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 87.9 bits (218), Expect = 5e-21
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 54  YLHNECEA-----PIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI---RG 105
           +LH E         I H D+K  NIL+ +  T  I+D GLA                  G
Sbjct: 154 HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVG 213

Query: 106 TRGYMAPE------WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLT 159
           T+ YMAPE        K+     +A+++  G+V  EI   RR       +  ++ + +L 
Sbjct: 214 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI--ARRCSIGGIHEDYQLPYYDLV 271

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-------------RTF 100
           YLH+     IIH D+  HN L+ E     ++DFGLA+L++ ++T             +  
Sbjct: 123 YLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKR 179

Query: 101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
             + G   +MAPE         K +VF++G+VL EI+    
Sbjct: 180 YTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVN 220

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 54  YLH--NECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
             H  ++    ++H D+KP N+ +D     K+ DFGLA++L  D +   T + GT  YM+
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFV-GTPYYMS 184

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE       + K+++++ G +L E+     
Sbjct: 185 PEQMNRMSYNEKSDIWSLGCLLYELCALMP 214

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 13/95 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDE-----FWTAKISDFGLAKLLMPDQTRTFTL--IRGT 106
           +LH      I+H D+KPHNIL+          A ISDFGL K L   +        + GT
Sbjct: 133 HLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGT 189

Query: 107 RGYMAPE---WSKNTPISMKANVFNYGVVLLEIVC 138
            G++APE          +   ++F+ G V   ++ 
Sbjct: 190 EGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVIS 224

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 73.1 bits (180), Expect = 7e-16
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H++    +I+ D+KP NI + +    KI DFGL   L  D  RT     GT  YM+PE
Sbjct: 137 YIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRT-RSK-GTLRYMSPE 191

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
              +     + +++  G++L E++    
Sbjct: 192 QISSQDYGKEVDLYALGLILAELLHVCD 219

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT-LIRGTRGYMAPEWSKNTPIS 121
           I+H DIKP NIL+D   T KI DFG+AK L  + + T T  + GT  Y +PE +K     
Sbjct: 132 IVHRDIKPQNILIDSNKTLKIFDFGIAKALS-ETSLTQTNHVLGTVQYFSPEQAKGEATD 190

Query: 122 MKANVFNYGVVLLEIV 137
              ++++ G+VL E++
Sbjct: 191 ECTDIYSIGIVLYEML 206

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++H+     ++H DIKP N+ +      K+ D GL +      T   +L+ GT  YM+PE
Sbjct: 151 HMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLV-GTPYYMSPE 206

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
                  + K+++++ G +L E+   + 
Sbjct: 207 RIHENGYNFKSDIWSLGCLLYEMAALQS 234

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)

Query: 29  RRRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFG 87
            RR + E   +   L I  Q +  V +LH++    ++H D+KP NI        K+ DFG
Sbjct: 153 NRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFG 209

Query: 88  LAKLLMPDQTRTFTLIR-----------GTRGYMAPEWSKNTPISMKANVFNYGVVLLEI 136
           L   +  D+     L             GT+ YM+PE       S K ++F+ G++L E+
Sbjct: 210 LVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFEL 269

Query: 137 VC 138
           + 
Sbjct: 270 LY 271

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      II+ D+KP N+L+D+    +ISD GLA  L   QT+T     GT G+MAPE
Sbjct: 304 HLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYA-GTPGFMAPE 359

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
                      + F  GV L E++ 
Sbjct: 360 LLLGEEYDFSVDYFALGVTLYEMIA 384

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 73.0 bits (179), Expect = 3e-15
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 307 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV---GTHGYMAPE 360

Query: 114 -WSKNTPISMKANVFNYGVVLLEIVC 138
              K       A+ F+ G +L +++ 
Sbjct: 361 VLQKGVAYDSSADWFSLGCMLFKLLR 386

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++H   +  I+H DIK  NI + +  T ++ DFG+A++L          I GT  Y++PE
Sbjct: 140 HVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACI-GTPYYLSPE 195

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
             +N P + K++++  G VL E+   + 
Sbjct: 196 ICENKPYNNKSDIWALGCVLYELCTLKH 223

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +++ D+KP NI++ E    K+ D G    +         L  GT G+ APE
Sbjct: 197 YLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI----NSFGYLY-GTPGFQAPE 247

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
             +  P ++  +++  G  L  +     
Sbjct: 248 IVRTGP-TVATDIYTVGRTLAALTLDLP 274

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 26/108 (24%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-------------EFWTAKISDFGLAKLLMPDQTRTF 100
           +LH+     IIH D+KP NIL+              E     ISDFGL K L   Q+   
Sbjct: 130 HLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFR 186

Query: 101 TLIR---GTRGYMAPE-------WSKNTPISMKANVFNYGVVLLEIVC 138
           T +    GT G+ APE             ++   ++F+ G V   I+ 
Sbjct: 187 TNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILS 234

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL  + +  I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE
Sbjct: 146 YLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPE 200

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
             + T  S+++++++ G+ L+E+
Sbjct: 201 RLQGTHYSVQSDIWSMGLSLVEM 223

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL-MPDQTRTFTLIRGTRGYMAP 112
           +LH++    ++H D+KP NI +      K+ DFGL   L             G   YMAP
Sbjct: 172 HLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQE---GDPRYMAP 225

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVC 138
           E  +       A+VF+ G+ +LE+ C
Sbjct: 226 ELLQG-SYGTAADVFSLGLTILEVAC 250

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 70.7 bits (174), Expect = 6e-15
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT-LIRGTRGYMAPEWSKNTPIS 121
             H D+KP NIL+     A + DFG+A     D+  T      GT  YMAPE    +  +
Sbjct: 155 ATHRDVKPENILVSADDFAYLVDFGIASAT-TDEKLTQLGNTVGTLYYMAPERFSESHAT 213

Query: 122 MKANVFNYGVVLLEIV 137
            +A+++    VL E +
Sbjct: 214 YRADIYALTCVLYECL 229

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 70.7 bits (174), Expect = 7e-15
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMAPEWSKNTP 119
           IIH D+KP NI++      K+ DFG+A+ +       T+T  +I GT  Y++PE ++   
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI-GTAQYLSPEQARGDS 195

Query: 120 ISMKANVFNYGVVLLEIV 137
           +  +++V++ G VL E++
Sbjct: 196 VDARSDVYSLGCVLYEVL 213

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 71.2 bits (174), Expect = 7e-15
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            LH+     ++H  ++P +I++D+     ++ F        D  R  +    +RG+  PE
Sbjct: 221 SLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLV---RDGARVVS--SVSRGFEPPE 272

Query: 114 W-----------SKNTPISMKANVFNYGVVLLEIVC 138
                        + T ++   + +  G+V+  I C
Sbjct: 273 LEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC 308

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 68.9 bits (168), Expect = 4e-14
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L ++    ++H    P N+ +       + D      +                Y   E
Sbjct: 209 NLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALWKV----GTRGPASSVPVTYAPRE 261

Query: 114 W--SKNTPISMKANVFNYGVVLLEIVC 138
           +  +     +   N +  G+ +  + C
Sbjct: 262 FLNASTATFTHALNAWQLGLSIYRVWC 288

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 68.7 bits (168), Expect = 6e-14
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-TRTFTLIRGTRGYMAP 112
            LH E    I++ D+KP NIL+D+    +ISD GLA  +   Q  +      GT GYMAP
Sbjct: 301 DLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRV---GTVGYMAP 354

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVC 138
           E  KN   +   + +  G +L E++ 
Sbjct: 355 EVVKNERYTFSPDWWALGCLLYEMIA 380

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR--------- 104
           +LH++    ++H D+KP NI        K+ DFGL   +  D+     L           
Sbjct: 133 FLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTG 189

Query: 105 --GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
             GT+ YM+PE       S K ++F+ G++L E++ 
Sbjct: 190 QVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY 225

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           YLH+     I+H DIK  N+L++ +    KISDFG +K L      T T   GT  YMAP
Sbjct: 137 YLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETF-TGTLQYMAP 192

Query: 113 E 113
           E
Sbjct: 193 E 193

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTL----IRGTRG 108
           YLH      I+H D+K  N+L+      A + DFG A  L PD      L    I GT  
Sbjct: 165 YLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTET 221

Query: 109 YMAPEWSKNTPISMKANVFNYGVVLLE 135
           +MAPE     P   K ++++   ++L 
Sbjct: 222 HMAPEVVMGKPCDAKVDIWSSCCMMLH 248

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
            +H      I+H D+KP N L+ +    K+ DFG+A  + PD T        G   YM P
Sbjct: 170 TIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPP 225

Query: 113 E-----------WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E               + IS K++V++ G +L  +   +
Sbjct: 226 EAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 264

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
            +H      I+H D+KP N L+ +    K+ DFG+A  + PD T        GT  YM P
Sbjct: 142 TIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 197

Query: 113 E--WSKNTPISMKANVFNY---------GVVLLEIVCCR 140
           E     ++      +             G +L  +   +
Sbjct: 198 EAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 236

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL N+    IIH D+KP NIL+DE     I+DF +A  ++P +T+  T+  GT+ YMAPE
Sbjct: 130 YLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAA-MLPRETQITTMA-GTKPYMAPE 184

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
            +H      I+H D+KP N L+ +    K+ DFG+A  + PD T        GT  YM P
Sbjct: 123 TIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 178

Query: 113 E-----------WSKNTPISMKANVFNYGVVLLEIVCCR 140
           E               + IS K++V++ G +L  +   +
Sbjct: 179 EAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 217

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y H   +  IIH D+KPH +L+   +     K+  FG+A  L          + GT  +M
Sbjct: 145 YCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRV-GTPHFM 200

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           APE  K  P     +V+  GV+L
Sbjct: 201 APEVVKREPYGKPVDVWGCGVIL 223

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +LH     PIIH D+K  NI +     + KI D GLA L      +      GT  +MAP
Sbjct: 144 FLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAV---IGTPEFMAP 199

Query: 113 EWSKNTPISMKANVFNYGVVLLEIV 137
           E  +        +V+ +G+ +LE+ 
Sbjct: 200 EMYEE-KYDESVDVYAFGMCMLEMA 223

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            LH      I+H D+KP NIL+D+    K++DFG +  L P +      + GT  Y+APE
Sbjct: 139 ALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE--KLREVCGTPSYLAPE 193

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 65.5 bits (159), Expect = 6e-13
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            LH+     ++H  ++P +I++D+     ++ F                        A  
Sbjct: 226 SLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAER 282

Query: 114 WSK-----NTPISMKANVFNYGVVLLEIVC 138
                    T ++   + +  G+ +  I C
Sbjct: 283 MLPFGQHHPTLMTFAFDTWTLGLAIYWIWC 312

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y H      +IH DIKP N+LM      KI+DFG +        R  T+  GT  Y+ PE
Sbjct: 129 YCHERK---VIHRDIKPENLLMGYKGELKIADFGWSV--HAPSLRRRTMC-GTLDYLPPE 182

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
             +      K +++  GV+  E + 
Sbjct: 183 MIEGKTHDEKVDLWCAGVLCYEFLV 207

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E    +++ D+K  N+++D+    KI+DFGL K  + D     T   GT  Y+APE
Sbjct: 263 YLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFC-GTPEYLAPE 319

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 320 VLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 130 YLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLC-GTPNYIAPE 185

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
                  S + +V++ G ++  ++ 
Sbjct: 186 VLSKKGHSFEVDVWSIGCIMYTLLV 210

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP--DQTRTFTLIRGTRGYMA 111
           YLH +    IIH D+KP NIL++E    +I+DFG AK+L P   Q R  + + GT  Y++
Sbjct: 145 YLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV-GTAQYVS 200

Query: 112 PE 113
           PE
Sbjct: 201 PE 202

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   +  I+H D+KP NIL+         KI DFG+++ +          I GT  Y+
Sbjct: 146 YLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE--LREIMGTPEYL 200

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           APE     PI+   +++N G++ 
Sbjct: 201 APEILNYDPITTATDMWNIGIIA 223

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +++ DIK  N+++D+    KI+DFGL K  + D     T   GT  Y+APE
Sbjct: 120 YLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC-GTPEYLAPE 175

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             ++       + +  GVV+ E++C R
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 17/99 (17%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR--------- 104
           Y+H++    IIH D+KP NI +DE    KI DFGLAK +           +         
Sbjct: 131 YIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNL 187

Query: 105 ----GTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVC 138
               GT  Y+A E    T   + K ++++ G++  E++ 
Sbjct: 188 TSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY 226

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +L    +  IIH DIKP NIL+D     K+ DFG++  L+    +T     G R YMAPE
Sbjct: 140 HLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDA--GCRPYMAPE 195

Query: 114 ----WSKNTPISMKANVFNYGVVLLEI 136
                +      ++++V++ G+ L E+
Sbjct: 196 RIDPSASRQGYDVRSDVWSLGITLYEL 222

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH +    +IH DIK  +IL+      K+SDFG    +  D  +  +L+ GT  +MAPE
Sbjct: 156 YLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLV-GTPYWMAPE 211

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
               +  + + ++++ G++++E+V
Sbjct: 212 VISRSLYATEVDIWSLGIMVIEMV 235

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  N+ ++E    KI DFGLA  +  D  R   L  GT  Y+APE
Sbjct: 156 YLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLC-GTPNYIAPE 211

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
                  S + +V++ G ++  ++ 
Sbjct: 212 VLSKKGHSFEVDVWSIGCIMYTLLV 236

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y H++    +IH DIKP N+L+      KI+DFG +       +R   L  GT  Y+ PE
Sbjct: 124 YCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSV--HAPSSRRTDLC-GTLDYLPPE 177

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
             +      K ++++ GV+  E + 
Sbjct: 178 MIEGRMHDEKVDLWSLGVLCYEFLV 202

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH      I H D+KP NI++          K+ DFGLA  +       F  I GT  +
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE--FKNIFGTPEF 184

Query: 110 MAPEWSKNTPISMKANVFNYGVVL 133
           +APE     P+ ++A++++ GV+ 
Sbjct: 185 VAPEIVNYEPLGLEADMWSIGVIT 208

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      I+H D+KP NIL+D+    ++SDFG +  L P +      + GT GY+APE
Sbjct: 215 FLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE--KLRELCGTPGYLAPE 269

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 62.8 bits (152), Expect = 8e-12
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      IIH D+KP NI++    +    KI D G AK L   +  T   + GT  Y+
Sbjct: 136 YLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCT-EFV-GTLQYL 190

Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVC 138
           APE  +    ++  + +++G +  E + 
Sbjct: 191 APELLEQKKYTVTVDYWSFGTLAFECIT 218

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     +IH DIK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE
Sbjct: 131 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPE 186

Query: 114 WSKNTPISMKANVFNYGVVLLEIV 137
                    K ++++ G++ +E++
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMI 210

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           + H      ++H ++KP N+L+    +    K++DFGLA  +  +Q   F    GT GY+
Sbjct: 125 HCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFA-GTPGYL 180

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           +PE  +  P     +++  GV+L
Sbjct: 181 SPEVLRKDPYGKPVDLWACGVIL 203

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     I+H D+   N+L+      KI+DFGLA  L     + +TL  GT  Y++PE
Sbjct: 127 YLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLC-GTPNYISPE 182

Query: 114 WSKNTPISMKANVFNYGVVLLEIVC 138
            +  +   ++++V++ G +   ++ 
Sbjct: 183 IATRSAHGLESDVWSLGCMFYTLLI 207

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y H+     I+H ++KP N+L+    +    K++DFGLA  +   +   +    GT GY+
Sbjct: 120 YCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE--AWHGFAGTPGYL 174

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           +PE  K  P S   +++  GV+L
Sbjct: 175 SPEVLKKDPYSKPVDIWACGVIL 197

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL  +    +IH D+KP NIL+DE    K+ DFG++  L+ D+ +  +   G   YMAPE
Sbjct: 139 YLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA--GCAAYMAPE 194

Query: 114 -----WSKNTPISMKANVFNYGVVLLEI 136
                        ++A+V++ G+ L+E+
Sbjct: 195 RIDPPDPTKPDYDIRADVWSLGISLVEL 222

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA-----------KISDFGLAK-LLMPDQTRTFT 101
            +H   +  IIH DIKP N ++   +              + D G +  + +  +   FT
Sbjct: 187 QVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFT 243

Query: 102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC 138
               T G+   E   N P + + + F     +  ++ 
Sbjct: 244 AKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLF 280

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP 112
           +LH++    +IH D+KP N+L++     K+ DFG++  L+ D  +       G + YMAP
Sbjct: 124 HLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDA---GCKPYMAP 178

Query: 113 E----WSKNTPISMKANVFNYGVVLLEI 136
           E           S+K+++++ G+ ++E+
Sbjct: 179 ERINPELNQKGYSVKSDIWSLGITMIEL 206

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+HNE    I H D+KP NILMD+    K+SDFG ++ ++  + +     RGT  +M PE
Sbjct: 166 YIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGS---RGTYEFMPPE 220

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH      I H D+KP NI++          K+ DFG+A  +       F  I GT  +
Sbjct: 123 YLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE--FKNIFGTPEF 177

Query: 110 MAPEWSKNTPISMKANVFNYGVVL 133
           +APE     P+ ++A++++ GV+ 
Sbjct: 178 VAPEIVNYEPLGLEADMWSIGVIT 201

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP 112
            +H       +H DIKP NILMD     +++DFG    LM D T ++   + GT  Y++P
Sbjct: 190 SVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAV-GTPDYISP 245

Query: 113 E 113
           E
Sbjct: 246 E 246

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      I+H D+KP N+L    +E     I+DFGL+K+       T     GT GY+
Sbjct: 121 YLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTAC---GTPGYV 174

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           APE     P S   + ++ GV+ 
Sbjct: 175 APEVLAQKPYSKAVDCWSIGVIT 197

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      I++ D+KP NIL+D      ++DFGL K  +   + T T   GT  Y+APE
Sbjct: 154 YLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFC-GTPEYLAPE 209

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
                P     + +  G VL E++   
Sbjct: 210 VLHKQPYDRTVDWWCLGAVLYEMLYGL 236

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y H      I+H ++KP N+L+    +    K++DFGLA  +   +   +    GT GY+
Sbjct: 143 YCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE--AWHGFAGTPGYL 197

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           +PE  K  P S   +++  GV+L
Sbjct: 198 SPEVLKKDPYSKPVDIWACGVIL 220

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH      I H D+KP NI++          K+ DFGLA  +       F  I GT  +
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE--FKNIFGTPEF 184

Query: 110 MAPEWSKNTPISMKANVFNYGVVL 133
           +APE     P+ ++A++++ GV+ 
Sbjct: 185 VAPEIVNYEPLGLEADMWSIGVIT 208

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  +     T T   GT  Y+APE
Sbjct: 125 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC-GTPNYIAPE 180

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             +        + +  GV++ E++  R
Sbjct: 181 ILRGEDYGFSVDWWALGVLMFEMMAGR 207

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH   E  I+H D+KP N+L          KI+DFGL+K++          + GT GY 
Sbjct: 163 YLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV--LMKTVCGTPGYC 217

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           APE  +      + ++++ G++ 
Sbjct: 218 APEILRGCAYGPEVDMWSVGIIT 240

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH   +  II+ D+K  N+L+D     K++DFG+ K  + +   T T   GT  Y+APE
Sbjct: 139 FLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFC-GTPDYIAPE 194

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             +        + +  GV+L E++C  
Sbjct: 195 ILQEMLYGPAVDWWAMGVLLYEMLCGH 221

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 28/107 (26%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDE-------------------FWTAKISDFGLAKLLMP 94
           Y+H+     ++H DIKP NI +                         KI D G    +  
Sbjct: 130 YIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS 186

Query: 95  DQTRTFTLIRGTRGYMAPE-WSKNTPISMKANVFNYGVVLLEIVCCR 140
            Q        G   ++A E   +N     KA++F   + ++      
Sbjct: 187 PQVEE-----GDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAE 228

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILM--DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           +LH      I H DI+P NI+       T KI +FG A+ L P     F L+     Y A
Sbjct: 117 FLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN--FRLLFTAPEYYA 171

Query: 112 PEWSKNTPISMKANVFNYGVVL 133
           PE  ++  +S   ++++ G ++
Sbjct: 172 PEVHQHDVVSTATDMWSLGTLV 193

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           ++H+     ++H D+KP N+L    ++    KI DFG A+L  PD     T    T  Y 
Sbjct: 121 HMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC-FTLHYA 176

Query: 111 APEWSKNTPISMKANVFNYGVVL 133
           APE           ++++ GV+L
Sbjct: 177 APELLNQNGYDESCDLWSLGVIL 199

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILM--DEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRG 108
           YLHN+    I H DIKP N L   ++ +  K+ DFGL+K         +  +    GT  
Sbjct: 183 YLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPY 239

Query: 109 YMAPE--WSKNTPISMKANVFNYGVVLLEIVC 138
           ++APE   + N     K + ++ GV+L  ++ 
Sbjct: 240 FVAPEVLNTTNESYGPKCDAWSAGVLLHLLLM 271

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILM--DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           ++H   E  I+H DIKP NI+    +  + KI DFGLA  L PD+     +   T  + A
Sbjct: 164 HMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI--VKVTTATAEFAA 218

Query: 112 PEWSKNTPISMKANVFNYGVVL 133
           PE     P+    +++  GV+ 
Sbjct: 219 PEIVDREPVGFYTDMWAIGVLG 240

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH      I H D+KP NI++          KI DFGLA  +       F  I GT  +
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE--FKNIFGTPEF 183

Query: 110 MAPEWSKNTPISMKANVFNYGVVL 133
           +APE     P+ ++A++++ GV+ 
Sbjct: 184 VAPEIVNYEPLGLEADMWSIGVIT 207

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH   E  II+ D+K  N+L+D     K++D+G+ K  +     T T   GT  Y+APE
Sbjct: 168 YLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC-GTPNYIAPE 223

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
             +        + +  GV++ E++  R
Sbjct: 224 ILRGEDYGFSVDWWALGVLMFEMMAGR 250

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK-LLMPDQTRTFTLIRGTRGYMAP 112
            +H+      IH D+KP N+L+D+    K++DFG    +      R  T + GT  Y++P
Sbjct: 183 AIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV-GTPDYISP 238

Query: 113 E 113
           E
Sbjct: 239 E 239

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      I++ D+K  NIL+D+    KI+DFG+ K  M    +T T   GT  Y+APE
Sbjct: 133 FLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFC-GTPDYIAPE 188

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
                  +   + +++GV+L E++  +
Sbjct: 189 ILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLI---------- 103
           ++H   + PIIH D+K  N+L+    T K+ DFG A  +      +++            
Sbjct: 151 HMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEIT 209

Query: 104 -RGTRGYMAPE---WSKNTPISMKANVFNYGVVLLEIVC 138
              T  Y  PE      N PI  K +++  G +L  +  
Sbjct: 210 RNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCF 248

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 17/97 (17%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           +L    E  I+H +IKP NI+     D     K++DFG A+ L  D+   F  + GT  Y
Sbjct: 127 HLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE--QFVSLYGTEEY 181

Query: 110 MAPE--------WSKNTPISMKANVFNYGVVLLEIVC 138
           + P+                   ++++ GV       
Sbjct: 182 LHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 21/74 (28%), Positives = 44/74 (59%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           +H D++  NIL+ E    K++DFGLA+L+  ++       +    + APE +     ++K
Sbjct: 385 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 444

Query: 124 ANVFNYGVVLLEIV 137
           ++V+++G++L E+ 
Sbjct: 445 SDVWSFGILLTELT 458

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +L ++    II+ D+K  N+++D     KI+DFG+ K  + D   T T   GT  Y+APE
Sbjct: 136 FLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC-GTPDYIAPE 191

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
                P     + + +GV+L E++  +
Sbjct: 192 IIAYQPYGKSVDWWAFGVLLYEMLAGQ 218

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 59.1 bits (144), Expect = 9e-11
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH   +  II+ D+KP NI+++     K++DFGL K  + D T T T   GT  YMAPE
Sbjct: 136 HLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFC-GTIEYMAPE 191

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 59.1 bits (144), Expect = 9e-11
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      II+ D+KP NIL+DE    K++DFGL+K  +  + + ++   GT  YMAPE
Sbjct: 141 HLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC-GTVEYMAPE 196

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 59.4 bits (144), Expect = 9e-11
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            IH ++   N L+ E    K++DFGL++L+  D        +    + APE       S+
Sbjct: 339 FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 398

Query: 123 KANVFNYGVVLLEIV 137
           K++V+ +GV+L EI 
Sbjct: 399 KSDVWAFGVLLWEIA 413

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR--------G 105
            +H +      H D+KP NIL+ +     + D G           +   +          
Sbjct: 149 AIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRC 205

Query: 106 TRGYMAPE-WS--KNTPISMKANVFNYGVVLLEIVC 138
           T  Y APE +S   +  I  + +V++ G VL  ++ 
Sbjct: 206 TISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMF 241

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      IIH D+KP N+L+   +E    KI+DFG +K ++ + +   TL  GT  Y+
Sbjct: 254 YLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSK-ILGETSLMRTLC-GTPTYL 308

Query: 111 APE 113
           APE
Sbjct: 309 APE 311

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 17/97 (17%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           +L    E  I+H +IKP NI+     D     K++DFG A+ L  D+    +L  GT  Y
Sbjct: 127 HLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV-SLY-GTEEY 181

Query: 110 MAPE--------WSKNTPISMKANVFNYGVVLLEIVC 138
           + P+                   ++++ GV       
Sbjct: 182 LHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 59.3 bits (143), Expect = 1e-10
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +L ++    II+ D+K  N+++D     KI+DFG+ K  + D   T T   GT  Y+APE
Sbjct: 457 FLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC-GTPDYIAPE 512

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
                P     + + +GV+L E++  +
Sbjct: 513 IIAYQPYGKSVDWWAFGVLLYEMLAGQ 539

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY 109
           YLH +    ++H D+KP NIL         + +I DFG AK L  +     T    T  +
Sbjct: 131 YLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPC-YTANF 186

Query: 110 MAPEWSKNTPISMKANVFNYGVVL 133
           +APE  +        ++++ GV+L
Sbjct: 187 VAPEVLERQGYDAACDIWSLGVLL 210

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 21/75 (28%), Positives = 44/75 (58%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D++  NIL+ E    K++DFGLA+L+  ++       +    + APE +     ++
Sbjct: 301 YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTI 360

Query: 123 KANVFNYGVVLLEIV 137
           K++V+++G++L E+ 
Sbjct: 361 KSDVWSFGILLTELT 375

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-QTRTFTLIRGTRGYMAP 112
            +H       +H DIKP NIL+D     +++DFG    L  D   R+   + GT  Y++P
Sbjct: 177 SVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAV-GTPDYLSP 232

Query: 113 E 113
           E
Sbjct: 233 E 233

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           ++H   +  I+H D+KP NIL         KI DFGLA+   P +     +  GT  ++A
Sbjct: 202 HMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--LKVNFGTPEFLA 256

Query: 112 PEWSKNTPISMKANVFNYGVVL 133
           PE      +S   ++++ GV+ 
Sbjct: 257 PEVVNYDFVSFPTDMWSVGVIA 278

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH       IH DIK  NIL++    AK++DFG+A  L     +  T+I GT  +MAPE
Sbjct: 140 YLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI-GTPFWMAPE 195

Query: 114 WSKNTPISMKANVFNYGVVLLE 135
             +    +  A++++ G+  +E
Sbjct: 196 VIQEIGYNCVADIWSLGITAIE 217

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      IIH D+KP N+L+   +E    KI+DFG +K ++ + +   TL  GT  Y+
Sbjct: 129 YLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSK-ILGETSLMRTLC-GTPTYL 183

Query: 111 APE 113
           APE
Sbjct: 184 APE 186

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           ++H   E   +H D+KP NI+     +   K+ DFGL   L P Q+    +  GT  + A
Sbjct: 270 HMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS--VKVTTGTAEFAA 324

Query: 112 PEWSKNTPISMKANVFNYGVVL 133
           PE ++  P+    ++++ GV+ 
Sbjct: 325 PEVAEGKPVGYYTDMWSVGVLS 346

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +I+ D+KP N+L+D+    +++DFG AK     + RT+TL  GT   +APE
Sbjct: 156 YLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKR---VKGRTWTL-CGTPEALAPE 208

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-TRTFTLIRGTRGYMAP 112
           +LH   +  II+ DIK  NIL+D      ++DFGL+K  + D+  R +    GT  YMAP
Sbjct: 174 HLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFC-GTIEYMAP 229

Query: 113 E 113
           +
Sbjct: 230 D 230

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y+H      I+H D+KP NIL+   ++    KI DFGL+     +         GT  Y+
Sbjct: 136 YMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT--KMKDRIGTAYYI 190

Query: 111 APE 113
           APE
Sbjct: 191 APE 193

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      I+H DIKP NIL+   +     KI DFGL+     D         GT  Y+
Sbjct: 161 YLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY--KLRDRLGTAYYI 215

Query: 111 APE 113
           APE
Sbjct: 216 APE 218

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y+H      I+H D+KP NIL+   ++    KI DFGL+     +         GT  Y+
Sbjct: 136 YMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT--KMKDRIGTAYYI 190

Query: 111 APE 113
           APE
Sbjct: 191 APE 193

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH++    II+ D+KP NIL+D+    KI+DFG AK + PD T T     GT  Y+APE
Sbjct: 121 YLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYV-PDVTYTL---CGTPDYIAPE 173

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y+H      I+H D+KP N+L+    +    +I DFGL+      +        GT  Y+
Sbjct: 141 YMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK--KMKDKIGTAYYI 195

Query: 111 APE 113
           APE
Sbjct: 196 APE 198

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+E     IH DIK  N+L+ E    K++DFG+A  L   Q +  T + GT  +MAPE
Sbjct: 134 YLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV-GTPFWMAPE 189

Query: 114 WSKNTPISMKANVFNYGVVLLEI 136
             K +    KA++++ G+  +E+
Sbjct: 190 VIKQSAYDSKADIWSLGITAIEL 212

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH      I+H D+KP N+L+   ++    KI DFGL+ +    +        GT  Y+
Sbjct: 151 YLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK--KMKERLGTAYYI 205

Query: 111 APE 113
           APE
Sbjct: 206 APE 208

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP 112
           Y H +    I+H D+K  N+L+D     KI+DFG +           F    G   Y AP
Sbjct: 129 YCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFC---GAPPYAAP 182

Query: 113 EWSKNTP-ISMKANVFNYGVVLLEIVC 138
           E  +       + +V++ GV+L  +V 
Sbjct: 183 ELFQGKKYDGPEVDVWSLGVILYTLVS 209

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           +LH+     I H D+KP N+L    ++    K++DFG AK    +  +T      T  Y+
Sbjct: 143 FLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPC---YTPYYV 196

Query: 111 APE 113
           APE
Sbjct: 197 APE 199

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           + HN     ++H DIK  NIL+D      K+ DFG   LL       F    GTR Y  P
Sbjct: 164 HCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD---GTRVYSPP 217

Query: 113 EWSKNTP-ISMKANVFNYGVVLLEIVC 138
           EW +        A V++ G++L ++VC
Sbjct: 218 EWIRYHRYHGRSAAVWSLGILLYDMVC 244

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y H      + H D+KP N L          K+ DFGLA    P +        GT  Y+
Sbjct: 121 YCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK--MMRTKVGTPYYV 175

Query: 111 APE 113
           +P+
Sbjct: 176 SPQ 178

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH+     I H D+KP N+L          K++DFG AK        + T    T  Y+
Sbjct: 176 YLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN--SLTTPCYTPYYV 230

Query: 111 APE 113
           APE
Sbjct: 231 APE 233

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 6/78 (7%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEWSKNTP 119
            IH D++  NIL+      KI+DFGLA+++  ++   +T   G +    + APE      
Sbjct: 305 YIHRDLRAANILVSASLVCKIADFGLARVIEDNE---YTAREGAKFPIKWTAPEAINFGS 361

Query: 120 ISMKANVFNYGVVLLEIV 137
            ++K++V+++G++L+EIV
Sbjct: 362 FTIKSDVWSFGILLMEIV 379

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      +IH DIK  N+L+ E    K+ DFG++  L     R  T I GT  +MAPE
Sbjct: 144 HLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI-GTPYWMAPE 199

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           Y H++    ++H D+KP NIL          KI DFGLA+L   D+    T   GT  YM
Sbjct: 139 YFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE--HSTNAAGTALYM 193

Query: 111 APE 113
           APE
Sbjct: 194 APE 196

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           + H+     ++H DIK  NIL+D     AK+ DFG   LL  +    F    GTR Y  P
Sbjct: 154 HCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFD---GTRVYSPP 207

Query: 113 EWSKNTP-ISMKANVFNYGVVLLEIVC 138
           EW       ++ A V++ G++L ++VC
Sbjct: 208 EWISRHQYHALPATVWSLGILLYDMVC 234

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
            LH      + H DIKPHN+L++E   T K+ DFG AK L P +     +   +R Y AP
Sbjct: 144 CLHLPS-VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYIC--SRYYRAP 200

Query: 113 E 113
           E
Sbjct: 201 E 201

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           ++H+     I H DIKP N+L++ +  T K+ DFG AK L+P +     +   +R Y AP
Sbjct: 156 FIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYIC--SRFYRAP 210

Query: 113 E 113
           E
Sbjct: 211 E 211

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH +    IIH DIKP N+L+ E    KI+DFG++             + GT  +MAPE
Sbjct: 152 YLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTV-GTPAFMAPE 207

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR--GTRGYMA 111
           Y+H+   A ++H D+KP N+L++     KI DFGLA++  PD   T  L     TR Y A
Sbjct: 143 YIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 199

Query: 112 PE 113
           PE
Sbjct: 200 PE 201

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP 112
           YL  +    IIH DIK  NI++ E +T K+ DFG A  L   +   TF    GT  Y AP
Sbjct: 145 YLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFC---GTIEYCAP 198

Query: 113 EWSKNTP-ISMKANVFNYGVVLLEIVC 138
           E     P    +  +++ GV L  +V 
Sbjct: 199 EVLMGNPYRGPELEMWSLGVTLYTLVF 225

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   NIL+ E    KI DFGLA+ +  D       +R         +MAPE   +
Sbjct: 214 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDP----DYVRKGDARLPLKWMAPETIFD 269

Query: 118 TPISMKANVFNYGVVLLEIV 137
              +++++V+++GV+L EI 
Sbjct: 270 RVYTIQSDVWSFGVLLWEIF 289

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+   A IIH D+KP NI++    T KI DFGLA+          T    TR Y APE
Sbjct: 142 HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPE 196

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 147 YIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVA----TRWYRAPE 199

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H    A IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 143 YIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVV----TRWYRAPE 195

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            LH    A ++H D+ P NIL+ +     I DF LA+    D  +T  +    R Y APE
Sbjct: 149 VLHE---AGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVT--HRWYRAPE 203

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+   A ++H D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 141 YIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVV----TRWYRAPE 193

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
           YLH++    I+H DIKP N+L+    T KIS  G+A+             R   G+  + 
Sbjct: 124 YLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEA--LHPFAADDTCRTSQGSPAFQ 178

Query: 111 APE 113
            PE
Sbjct: 179 PPE 181

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIR------ 104
           +LHN+    I H D+KP NIL    ++    KI DF L   +  +   +           
Sbjct: 126 FLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC 182

Query: 105 GTRGYMAPE 113
           G+  YMAPE
Sbjct: 183 GSAEYMAPE 191

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           Y+H+     I H DIKP N+L+D +    K+ DFG AK L+  +     +   +R Y AP
Sbjct: 171 YIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYIC--SRYYRAP 225

Query: 113 E 113
           E
Sbjct: 226 E 226

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH++    IIH D+K  N+LM      +++DFG++   +    +  + I GT  +MAPE
Sbjct: 132 FLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFI-GTPYWMAPE 187

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           Y+H+     I H DIKP N+L+D      K+ DFG AK+L+  +     +   +R Y AP
Sbjct: 156 YIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYIC--SRYYRAP 210

Query: 113 E 113
           E
Sbjct: 211 E 211

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP 112
           Y H      I+H D+KP N+L+D+    KI+DFGL+ ++      +T     G+  Y AP
Sbjct: 123 YCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSC---GSPNYAAP 176

Query: 113 EWSKNTP-ISMKANVFNYGVVLLEIVC 138
           E          + +V++ G+VL  ++ 
Sbjct: 177 EVINGKLYAGPEVDVWSCGIVLYVMLV 203

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY---- 109
           YL        IH D+   N L+ E    KISDFG+++         +    G R      
Sbjct: 228 YLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADG---VYAASGGLRQVPVKW 281

Query: 110 MAPEWSKNTPISMKANVFNYGVVLLEIV 137
            APE       S +++V+++G++L E  
Sbjct: 282 TAPEALNYGRYSSESDVWSFGILLWETF 309

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP 112
           Y H      ++H D+KP N+L+D    AKI+DFGL+ ++   +  RT     G+  Y AP
Sbjct: 131 YCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC---GSPNYAAP 184

Query: 113 E 113
           E
Sbjct: 185 E 185

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+   A IIH D+KP NI++    T KI DFGLA+          T    TR Y APE
Sbjct: 179 HLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPE 233

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP 112
           Y H      ++H D+KP N+L+D    AKI+DFGL+ ++   +  RT     G+  Y AP
Sbjct: 126 YCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC---GSPNYAAP 179

Query: 113 EWSKNTP-ISMKANVFNYGVVLLEIVC 138
           E          + ++++ GV+L  ++C
Sbjct: 180 EVISGRLYAGPEVDIWSCGVILYALLC 206

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
           YLH      I H DIKP N+L+DE    KISDFGLA +          L+    GT  Y+
Sbjct: 120 YLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV--FRYNNRERLLNKMCGTLPYV 174

Query: 111 APE 113
           APE
Sbjct: 175 APE 177

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG-------- 105
            LH    + +IH D+KP N+L++     K+ DFGLA+++                     
Sbjct: 127 VLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFV 183

Query: 106 -TRGYMAPE 113
            TR Y APE
Sbjct: 184 ATRWYRAPE 192

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR----GTRG 108
            YLH       IH D+K  NIL+ E  + +I+DFG++  L      T   +R    GT  
Sbjct: 135 EYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPC 191

Query: 109 YMAPE 113
           +MAPE
Sbjct: 192 WMAPE 196

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQT-RTFTLIRGTRGYM 110
           Y H+     I H D+K  N L+D       KI DFG +K  +     ++     GT  Y+
Sbjct: 131 YCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTV---GTPAYI 184

Query: 111 APE 113
           APE
Sbjct: 185 APE 187

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDE------FWTAKISDFGLAKLLMPDQTRTFTLIRGTR 107
           Y+H  C   IIH DIKP N+LM+           KI+D G A             I+ TR
Sbjct: 146 YMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNA---CWYDEHYTNSIQ-TR 199

Query: 108 GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
            Y +PE     P    A++++   ++ E++
Sbjct: 200 EYRSPEVLLGAPWGCGADIWSTACLIFELI 229

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
           YLH      I H DIKP N+L+DE    KISDFGLA +          L+    GT  Y+
Sbjct: 120 YLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV--FRYNNRERLLNKMCGTLPYV 174

Query: 111 APE 113
           APE
Sbjct: 175 APE 177

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIR--GTRGYM 110
           Y+H+   A ++H D+KP N+ ++ E    KI DFGLA+++ P  +    L     T+ Y 
Sbjct: 135 YIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYR 191

Query: 111 APE 113
           +P 
Sbjct: 192 SPR 194

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           RE   + S L L+ +L   +    YL N      +H D+   NIL++     K+SDFGL+
Sbjct: 138 REKDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLS 194

Query: 90  KLLMPDQTRTFTLIRGTRG------YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           ++L  D   T+T    T G      + APE       +  ++V+++G+V+ E++
Sbjct: 195 RVLEDDPEATYT----TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM 244

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           Y H      I+H D+KPHN+++D E    ++ D+GLA+   P Q     +   +R +  P
Sbjct: 145 YCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRV--ASRYFKGP 199

Query: 113 E 113
           E
Sbjct: 200 E 200

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D++  NIL+ +  + KI+DFGLA+L+  ++   +T   G +    + APE       
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNE---YTAREGAKFPIKWTAPEAINYGTF 187

Query: 121 SMKANVFNYGVVLLEIV 137
           ++K++V+++G++L EIV
Sbjct: 188 TIKSDVWSFGILLTEIV 204

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH+     +IH D+K  NIL+ E    K+ DFG A ++        + + GT  +MAPE
Sbjct: 169 YLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM----APANSFV-GTPYWMAPE 220

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H   +   IH D+KP NIL+ +    K+ DFG A+LL    +  +     TR Y +PE
Sbjct: 117 FCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLL-TGPSDYYDDEVATRWYRSPE 172

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISM 122
            +H D+   N+L+ E   AK+SDFGL K     Q      ++    + APE  +    S 
Sbjct: 310 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK----WTAPEALREKKFST 365

Query: 123 KANVFNYGVVLLEIV 137
           K++V+++G++L EI 
Sbjct: 366 KSDVWSFGILLWEIY 380

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           IIH DIKP NIL+ +    K+ DFG A+ L       +     TR Y APE
Sbjct: 145 IIHRDIKPENILVSQSGVVKLCDFGFARTL-AAPGEVYDDEVATRWYRAPE 194

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           +  K       L+L   Q S    YL        +H DI   N+L+      K+ DFGL+
Sbjct: 482 QVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLS 538

Query: 90  KLLMPDQTRTFTLIRGTRG-----YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           + +           + ++G     +MAPE       +  ++V+ +GV + EI+
Sbjct: 539 RYMEDSTY-----YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 586

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR------GTR 107
           Y+H+      +H  +K  +IL+       +S       ++    R   +           
Sbjct: 143 YIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVL 199

Query: 108 GYMAPE 113
            +++PE
Sbjct: 200 PWLSPE 205

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H ++   N+L+      +++DFG+A LL PD  +        +    +MA E       
Sbjct: 137 VHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLY--SEAKTPIKWMALESIHFGKY 194

Query: 121 SMKANVFNYGVVLLEIV 137
           + +++V++YGV + E++
Sbjct: 195 THQSDVWSYGVTVWELM 211

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H+     ++H D+KP N+L++     K+++FGLA+       R ++    T  Y  P+
Sbjct: 116 FCHSRN---VLHRDLKPQNLLINRNGELKLANFGLAR-AFGIPVRCYSAEVVTLWYRPPD 171

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   NIL++     K+SDFGL ++L  D    +T    TRG      + +PE    
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYT----TRGGKIPIRWTSPEAIAY 224

Query: 118 TPISMKANVFNYGVVLLEIV 137
              +  ++V++YG+VL E++
Sbjct: 225 RKFTSASDVWSYGIVLWEVM 244

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H ++   N+L+     AKISDFGL+K L  D +  +T     +    + APE       
Sbjct: 458 VHRNLAARNVLLVNRHYAKISDFGLSKALGADDS-YYTARSAGKWPLKWYAPECINFRKF 516

Query: 121 SMKANVFNYGVVLLEIV 137
           S +++V++YGV + E +
Sbjct: 517 SSRSDVWSYGVTMWEAL 533

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           +++KE+  ++ LL    Q      YL        IH D+   NIL++     KI DFGL 
Sbjct: 105 QKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLT 161

Query: 90  KLLMPDQTRTFTLIRGTRG---YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           K+L P     F +         + APE    +  S+ ++V+++GVVL E+ 
Sbjct: 162 KVL-PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 211

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H      I+H D+KP N+L+++    K+ DFGLA+        TF+    T  Y AP+
Sbjct: 123 FCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLAR-AFGIPVNTFSSEVVTLWYRAPD 178

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H      I+H D+KP N+L++     K++DFGLA+       R++T    T  Y AP+
Sbjct: 134 HCHQHR---ILHRDLKPQNLLINSDGALKLADFGLAR-AFGIPVRSYTHEVVTLWYRAPD 189

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D+   N L+D     K+SDFG+ + ++ DQ   +    GT+    + APE       
Sbjct: 126 IHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ---YVSSVGTKFPVKWSAPEVFHYFKY 182

Query: 121 SMKANVFNYGVVLLEIV 137
           S K++V+ +G+++ E+ 
Sbjct: 183 SSKSDVWAFGILMWEVF 199

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   N+L+     AKI DFGLA+ +M D                  +MAPE   +
Sbjct: 185 CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYI----VKGNARLPVKWMAPESIFD 240

Query: 118 TPISMKANVFNYGVVLLEIV 137
              +++++V++YG++L EI 
Sbjct: 241 CVYTVQSDVWSYGILLWEIF 260

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D+   N L+++    K+SDFGL++ ++ D+   +T   G++    +  PE    +  
Sbjct: 142 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE---YTSSVGSKFPVRWSPPEVLMYSKF 198

Query: 121 SMKANVFNYGVVLLEIV 137
           S K++++ +GV++ EI 
Sbjct: 199 SSKSDIWAFGVLMWEIY 215

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   NIL+      KI DFGLA+ +  D                  +MAPE   N
Sbjct: 166 CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYV----VKGNARLPVKWMAPESIFN 221

Query: 118 TPISMKANVFNYGVVLLEIV 137
              + +++V++YG+ L E+ 
Sbjct: 222 CVYTFESDVWSYGIFLWELF 241

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH  C   I+H D+KP NIL+    T K++DFGLA++       T  ++  T  Y APE
Sbjct: 135 FLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVV--TLWYRAPE 189

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           +H D+   N+L+D     K+SDFGL+++L  D    +T    T G     + APE     
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYT---TTGGKIPIRWTAPEAIAFR 229

Query: 119 PISMKANVFNYGVVLLEIV 137
             S  ++V+++GVV+ E++
Sbjct: 230 TFSSASDVWSFGVVMWEVL 248

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           +++KE+  ++ LL    Q      YL  +     IH D+   NIL++     KI DFGL 
Sbjct: 136 QKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLT 192

Query: 90  KLLMPDQTRTFTLIRGTRG---YMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           K+L P     + +         + APE    +  S+ ++V+++GVVL E+ 
Sbjct: 193 KVL-PQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 242

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + H+     ++H D+KP N+L++     K++DFGLA+       RT+T    T  Y APE
Sbjct: 118 FCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLAR-AFGVPVRTYTHEVVTLWYRAPE 173

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y H+     ++H D+KP N+L++     KI+DFGLA+       R +T    T  Y AP+
Sbjct: 115 YCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR-AFGIPVRKYTHEIVTLWYRAPD 170

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 24/81 (29%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG-------- 105
           ++H   E+ IIH D+KP N L+++  + K+ DFGLA+ +  ++                 
Sbjct: 144 FIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPH 200

Query: 106 -------------TRGYMAPE 113
                        TR Y APE
Sbjct: 201 NKNLKKQLTSHVVTRWYRAPE 221

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y H +    ++H D+KP N+L++E    K++DFGLA+      T+T+     T  Y  P+
Sbjct: 115 YCHRQK---VLHRDLKPQNLLINERGELKLADFGLAR-AKSIPTKTYDNEVVTLWYRPPD 170

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     ++H D+KP NIL+      K++DFGLA++       T  ++  T  Y APE
Sbjct: 135 FLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV--TLWYRAPE 189

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL----IRGTRGYMAPEWSKNTP 119
           IH D+   N L+ E    K++DFGL++L+  D           I+    + APE      
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK----WTAPESLAYNK 188

Query: 120 ISMKANVFNYGVVLLEIV 137
            S+K++V+ +GV+L EI 
Sbjct: 189 FSIKSDVWAFGVLLWEIA 206

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      I+H D+KP+N+L+DE    K++DFGLAK       R +T    TR Y APE
Sbjct: 127 YLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAK-SFGSPNRAYTHQVVTRWYRAPE 182

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           RE+K+   +  LL    Q +    YL +     ++H D+   N+L+      KI+DFGLA
Sbjct: 108 REHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLA 164

Query: 90  KLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           KLL  ++        G +    +MA E   +   + +++V++YGV + E++
Sbjct: 165 KLLGAEEKEYHA--EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM 213

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG-------- 105
           YLH      ++H D+KP NIL++     K++DFGL++  +  +  T  +           
Sbjct: 124 YLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENF 180

Query: 106 ------------TRGYMAPE 113
                       TR Y APE
Sbjct: 181 DDDQPILTDYVATRWYRAPE 200

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   N ++DE +T K++DFGLA+ +     R +  ++  R       + A E  + 
Sbjct: 146 VHRDLAARNCMLDESFTVKVADFGLARDI---LDREYYSVQQHRHARLPVKWTALESLQT 202

Query: 118 TPISMKANVFNYGVVLLEIV 137
              + K++V+++GV+L E++
Sbjct: 203 YRFTTKSDVWSFGVLLWELL 222

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D+   N L+ E    K+SDFG+ + ++ DQ   +T   GT+    + +PE    +  
Sbjct: 126 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ---YTSSTGTKFPVKWASPEVFSFSRY 182

Query: 121 SMKANVFNYGVVLLEIV 137
           S K++V+++GV++ E+ 
Sbjct: 183 SSKSDVWSFGVLMWEVF 199

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
            +NK K +    L    Q      YL        +H D+   N+L++     KI DFGL 
Sbjct: 117 PKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLT 173

Query: 90  KLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           K +       +T+         + APE    +   + ++V+++GV L E++
Sbjct: 174 KAI-ETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 223

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG---YMAPEWSKNTP 119
            +H D+   NIL++     KI+DFGLAKLL  D+   + +    +    + APE   +  
Sbjct: 148 CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKD-YYVVREPGQSPIFWYAPESLSDNI 206

Query: 120 ISMKANVFNYGVVLLEIV 137
            S +++V+++GVVL E+ 
Sbjct: 207 FSRQSDVWSFGVVLYELF 224

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           +H DI   N+L+      K+ DFGL++ +           + ++G     +MAPE     
Sbjct: 138 VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-----YKASKGKLPIKWMAPESINFR 192

Query: 119 PISMKANVFNYGVVLLEIV 137
             +  ++V+ +GV + EI+
Sbjct: 193 RFTSASDVWMFGVCMWEIL 211

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            +H D+   N+L+      KI DFGLA+ +M D                  +MAPE    
Sbjct: 193 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYV----VRGNARLPVKWMAPESLFE 248

Query: 118 TPISMKANVFNYGVVLLEIV 137
              ++K++V++YG++L EI 
Sbjct: 249 GIYTIKSDVWSYGILLWEIF 268

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   N+L+ E    KI+DFGLA+ +           + T G     +MAPE   +
Sbjct: 212 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYK----KTTNGRLPVKWMAPEALFD 267

Query: 118 TPISMKANVFNYGVVLLEIV 137
              + +++V+++GV+L EI 
Sbjct: 268 RIYTHQSDVWSFGVLLWEIF 287

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA-----KISDFGLAKLLMPDQTRTFTLIRGTRG 108
           + H+      +H D+KP N+L+     +     KI DFGLA+       R FT    T  
Sbjct: 147 FCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR-AFGIPIRQFTHEIITLW 202

Query: 109 YMAPE 113
           Y  PE
Sbjct: 203 YRPPE 207

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D+   N+L+     AKISDFGL+K L  D+   +      +    + APE       
Sbjct: 139 VHRDLAARNVLLVTQHYAKISDFGLSKALRADEN-YYKAQTHGKWPVKWYAPECINYYKF 197

Query: 121 SMKANVFNYGVVLLEIV 137
           S K++V+++GV++ E  
Sbjct: 198 SSKSDVWSFGVLMWEAF 214

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           +H D+   N+L+     AKISDFGL+K L  D +  +T     +    + APE       
Sbjct: 132 VHRDLAARNVLLVNRHYAKISDFGLSKALGADDS-YYTARSAGKWPLKWYAPECINFRKF 190

Query: 121 SMKANVFNYGVVLLEIV 137
           S +++V++YGV + E +
Sbjct: 191 SSRSDVWSYGVTMWEAL 207

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL---MPDQTRTFTLIRGTRGYM 110
           Y+H      I+H D+K  N+L+      K++DFGLA+        Q   +T    T  Y 
Sbjct: 139 YIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYR 195

Query: 111 APE 113
            PE
Sbjct: 196 PPE 198

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           Y+H    A I+H D+KP N L+++  + K+ DFGLA
Sbjct: 171 YVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLA 203

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   NIL+ E    KI DFGLA+ +  D        R         +MAPE   +
Sbjct: 169 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPETIFD 224

Query: 118 TPISMKANVFNYGVVLLEIV 137
              +++++V+++GV+L EI 
Sbjct: 225 RVYTIQSDVWSFGVLLWEIF 244

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 31  RENKEKESNLGLLLILPQPSCN-VYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
           RE+K+   +  LL    Q +    YL +     ++H D+   N+L+      KI+DFGLA
Sbjct: 108 REHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLA 164

Query: 90  KLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPISMKANVFNYGVVLLEIV 137
           KLL  ++        G +    +MA E   +   + +++V++YGV + E++
Sbjct: 165 KLLGAEEKEYHA--EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM 213

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 23/87 (26%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   N ++DE +T K++DFGLA+ +     + F  +    G      +MA E    
Sbjct: 214 VHRDLAARNCMLDEKFTVKVADFGLARDM---YDKEFDSVHNKTGAKLPVKWMALE---- 266

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S++   F        +GV+L E++
Sbjct: 267 ---SLQTQKFTTKSDVWSFGVLLWELM 290

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D+   N+L+      KI DFGL + L  +    + +    +    + APE  K    
Sbjct: 143 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDD-HYVMQEHRKVPFAWCAPESLKTRTF 201

Query: 121 SMKANVFNYGVVLLEIV 137
           S  ++ + +GV L E+ 
Sbjct: 202 SHASDTWMFGVTLWEMF 218

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           +H DI   NIL+      K+ DFGL++ +  +        + +       +M+PE     
Sbjct: 135 VHRDIAVRNILVASPECVKLGDFGLSRYIEDEDY-----YKASVTRLPIKWMSPESINFR 189

Query: 119 PISMKANVFNYGVVLLEIV 137
             +  ++V+ + V + EI+
Sbjct: 190 RFTTASDVWMFAVCMWEIL 208

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 23/87 (26%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   N+L+ E    KI+DFGLA+ +           + T G     +MAPE    
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYK----KTTNGRLPVKWMAPE---- 229

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              ++   V+        +GV++ EI 
Sbjct: 230 ---ALFDRVYTHQSDVWSFGVLMWEIF 253

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 23/87 (26%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
           ++H D+   NIL+ E    KISDFGL++ +  + +      + ++G     +MA E    
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYV----KRSQGRIPVKWMAIE---- 222

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S+  +++        +GV+L EIV
Sbjct: 223 ---SLFDHIYTTQSDVWSFGVLLWEIV 246

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 23/87 (26%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   N+L+ E    KI+DFGLA+ +           + T G     +MAPE    
Sbjct: 224 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYK----KTTNGRLPVKWMAPE---- 275

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              ++   V+        +GV++ EI 
Sbjct: 276 ---ALFDRVYTHQSDVWSFGVLMWEIF 299

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 53  VYLHNECEAPIIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
             LH   +  IIHCD+KP NIL+ +   +  K+ DFG +     +  R +T I+ +R Y 
Sbjct: 214 DALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSS---CYEHQRVYTYIQ-SRFYR 266

Query: 111 APEWSKNTPISMKANVFNYGVVLLEI 136
           APE        M  ++++ G +L E+
Sbjct: 267 APEVILGARYGMPIDMWSLGCILAEL 292

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 23/87 (26%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG------YMAPEWSKN 117
           +H D+   N ++DE +T K++DFGLA+ +     + +  +    G      +MA E    
Sbjct: 150 VHRDLAARNCMLDEKFTVKVADFGLARDM---YDKEYYSVHNKTGAKLPVKWMALE---- 202

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S++   F        +GV+L E++
Sbjct: 203 ---SLQTQKFTTKSDVWSFGVLLWELM 226

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA----KISDFGLAKLLMPDQTRTFTLIRG---T 106
           YLH      ++H D+KP NIL+          KI+D G A+ L     +    +     T
Sbjct: 143 YLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFAR-LFNSPLKPLADLDPVVVT 198

Query: 107 RGYMAPE 113
             Y APE
Sbjct: 199 FWYRAPE 205

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA--KISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           +L    E  IIHCD+KP NIL+     +  KI DFG +        R +  I+ +R Y +
Sbjct: 172 FLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSS---CQLGQRIYQYIQ-SRFYRS 226

Query: 112 PE 113
           PE
Sbjct: 227 PE 228

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMK 123
           +H D+   N+L+ E   AK+SDFGL K     Q      ++    + APE  +    S K
Sbjct: 139 VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK----WTAPEALREKKFSTK 194

Query: 124 ANVFNYGVVLLEIV 137
           ++V+++G++L EI 
Sbjct: 195 SDVWSFGILLWEIY 208

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTR---GYMAPEWSKNTPI 120
           IH D+   N+L+D     KI DFGLAK + P+    + +         + APE  K    
Sbjct: 156 IHRDLAARNVLLDNDRLVKIGDFGLAKAV-PEGHEYYRVREDGDSPVFWYAPECLKEYKF 214

Query: 121 SMKANVFNYGVVLLEIV 137
              ++V+++GV L E++
Sbjct: 215 YYASDVWSFGVTLYELL 231

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 23/86 (26%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           +H D+   N ++ +  T  ++DFGL+K +           +G        ++A E     
Sbjct: 169 LHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYR----QGRIAKMPVKWIAIE----- 219

Query: 119 PISMKANVFN-------YGVVLLEIV 137
             S+   V+        +GV + EI 
Sbjct: 220 --SLADRVYTSKSDVWAFGVTMWEIA 243

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-----QTRTFTLIRGTRGYMAPEWSKNT 118
           +H D+   N L+      KI DFG+++ +           T   IR    +M PE     
Sbjct: 155 VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIR----WMPPESIMYR 210

Query: 119 PISMKANVFNYGVVLLEIV 137
             + +++V+++GV+L EI 
Sbjct: 211 KFTTESDVWSFGVILWEIF 229

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 64  IHCDIKPHNILMDEFWT--------AKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS 115
           IH ++   NIL+              K+SD G++  ++P        I     ++ PE  
Sbjct: 135 IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQER-IP----WVPPECI 189

Query: 116 KNTPI-SMKANVFNYGVVLLEIV 137
           +N    ++  + +++G  L EI 
Sbjct: 190 ENPKNLNLATDKWSFGTTLWEIC 212

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKNT 118
           IH D+   N ++ E  T  ++DFGL++ +           +G        ++A E   + 
Sbjct: 159 IHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYR----QGCASKLPVKWLALESLADN 214

Query: 119 PISMKANVFNYGVVLLEIV 137
             ++ ++V+ +GV + EI+
Sbjct: 215 LYTVHSDVWAFGVTMWEIM 233

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 25/87 (28%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM-PDQTRTFTLIRGTRGY-----MAPEWSKN 117
           +H D+   N ++ E +T KI DFG+ + +   D  R     +G +G      M+PE    
Sbjct: 160 VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR-----KGGKGLLPVRWMSPE---- 210

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S+K  VF        +GVVL EI 
Sbjct: 211 ---SLKDGVFTTYSDVWSFGVVLWEIA 234

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 25/87 (28%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLM-PDQTRTFTLIRGTRG-----YMAPEWSKN 117
           +H D+   N L+ +    KI DFG+++ +   D  R      G R      +M PE    
Sbjct: 180 VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYR-----VGGRTMLPIRWMPPE---- 230

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S+    F        +GVVL EI 
Sbjct: 231 ---SILYRKFTTESDVWSFGVVLWEIF 254

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 23/86 (26%)

Query: 64  IHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-----QTRTFTLIRGTRGYMAPEWSKNT 118
           +H D+   N+L+ +    KISD GL + +           +   IR    +MAPE     
Sbjct: 150 VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIR----WMAPE----- 200

Query: 119 PISMKANVFN-------YGVVLLEIV 137
             ++    F+       YGVVL E+ 
Sbjct: 201 --AIMYGKFSIDSDIWSYGVVLWEVF 224

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK-----ISDFGLAK 90
           Y+H++    +I+ D+KP N L+            I DF LAK
Sbjct: 120 YVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 8/42 (19%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK-----ISDFGLAK 90
            +H +    +++ DIKP N L+    +       + DFG+ K
Sbjct: 121 SIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 38/251 (15%), Positives = 75/251 (29%), Gaps = 72/251 (28%)

Query: 9   IEGERGCEVKGKRKQFGAVVRRRENKEKES------NLG------LLLILPQPSCNVYLH 56
           I+G  G    GK      V    + + K        NL        +L + Q        
Sbjct: 155 IDGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 57  NECEAPIIHCDI-----------------KPHN---ILMDEFWTAKISD-FGL-AKLLMP 94
           N         +I                 KP+    +++     AK  + F L  K+L+ 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL- 270

Query: 95  DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSK-PEEI 153
             TR   +      +++   + +  +   +        +  +    + ++  P   P E+
Sbjct: 271 -TTRFKQVTD----FLSAATTTHISLDHHSMTLTPDE-VKSL--LLKYLDCRPQDLPREV 322

Query: 154 VFIN--------LTYKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLE----------- 194
           +  N         + +  +   +D   H   VN   L  +I+S + +LE           
Sbjct: 323 LTTNPRRLSIIAESIRDGLAT-WDNWKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 195 GI--TDISIPP 203
            +      IP 
Sbjct: 379 SVFPPSAHIPT 389

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 23/87 (26%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-----QTRTFTLIRGTRGYMAPEWSKN 117
            +H D+   N L+ E    KI+DFGL++ +               IR    +M PE    
Sbjct: 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIR----WMPPE---- 246

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S+  N +        YGVVL EI 
Sbjct: 247 ---SIFYNRYTTESDVWAYGVVLWEIF 270

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKI--SDFGLAKLLMPDQT------RTFTLIRG 105
           Y+H       +H DIK  N+L+      ++  +D+GL+    P+               G
Sbjct: 166 YIHENE---YVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNG 222

Query: 106 TRGYM 110
           T  + 
Sbjct: 223 TIEFT 227

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 2/30 (6%), Positives = 7/30 (23%)

Query: 60  EAPIIHCDIKPHNILMDEFWTAKISDFGLA 89
            A +      P  + +       ++     
Sbjct: 147 RAGVALSIDHPSRVRVSIDGDVVLAYPATM 176

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 12/82 (14%)

Query: 64  IHCDIKPHNILMDEFW---TAKISDFGLAKLLMPDQTRTFTLIRGTRGY-----MAPEWS 115
           IH DI   N L+        AKI DFG+A+ +           +G         M PE  
Sbjct: 162 IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR----KGGCAMLPVKWMPPEAF 217

Query: 116 KNTPISMKANVFNYGVVLLEIV 137
                + K + +++GV+L EI 
Sbjct: 218 MEGIFTSKTDTWSFGVLLWEIF 239

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAK 90
           YLH+     I H D+KP N+L          K++DFG AK
Sbjct: 132 YLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 28/90 (31%)

Query: 64  IHCDIKPHNILMDEFW---TAKISDFGLAKLLM-PDQTRTFTLIRGTRGY-----MAPEW 114
           IH DI   N L+        AKI DFG+A+ +      R     +G         M PE 
Sbjct: 203 IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR-----KGGCAMLPVKWMPPE- 256

Query: 115 SKNTPISMKANVFN-------YGVVLLEIV 137
                 +    +F        +GV+L EI 
Sbjct: 257 ------AFMEGIFTSKTDTWSFGVLLWEIF 280

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 26/87 (29%)

Query: 63  IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRG-----YMAPEWSKN 117
            IH D+   NIL+ E + AKI+DFGL++    +        + T G     +MA E    
Sbjct: 163 FIHRDLAARNILVGENYVAKIADFGLSR--GQEVYV-----KKTMGRLPVRWMAIE---- 211

Query: 118 TPISMKANVFN-------YGVVLLEIV 137
              S+  +V+        YGV+L EIV
Sbjct: 212 ---SLNYSVYTTNSDVWSYGVLLWEIV 235

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKI--SDFGLAKLLMPDQTR 98
           Y+H       +H DIK  N+L++     ++   D+GLA    P+   
Sbjct: 167 YIHEHE---YVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVH 210

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 34/94 (36%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTA-------------------KISDFGLAKLLMP 94
           +LH   E  + H D+KP NIL                          +++DFG A     
Sbjct: 138 FLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSA---TF 191

Query: 95  DQTRTFTLIRGTRGYMAPE------WSKNTPISM 122
           D     T++  TR Y  PE      W+   P  +
Sbjct: 192 DHEHHTTIVA-TRHYRPPEVILELGWA--QPCDV 222

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKI--SDFGLAKLLMPDQT 97
           +LH       +H ++   NI +D    +++  + +G A    P   
Sbjct: 174 FLHENE---YVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGK 216

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 55/133 (41%)

Query: 54  YLHNECEAPIIHCDIKPHNILM-------------------------------------- 75
           YLH +C   IIH DIKP NIL+                                      
Sbjct: 161 YLHTKCR--IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAG 218

Query: 76  -----------DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKA 124
                       E    KI+D G A  +     + FT    TR Y + E    +  +  A
Sbjct: 219 NFLVNPLEPKNAEKLKVKIADLGNACWV----HKHFTEDIQTRQYRSLEVLIGSGYNTPA 274

Query: 125 NVFNYGVVLLEIV 137
           ++++   +  E+ 
Sbjct: 275 DIWSTACMAFELA 287

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK---ISDFGLAKLLMPDQT------RTFTLIR 104
           ++H++     +H DIKP N LM     A    I DFGLAK      T      R    + 
Sbjct: 118 FVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLT 174

Query: 105 GTRGYM 110
           GT  Y 
Sbjct: 175 GTARYA 180

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAK---ISDFGLAKLLMPDQTRT 99
           Y+H++     IH D+KP N LM          I DFGLAK     +T  
Sbjct: 120 YIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.98
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.98
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.98
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.98
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.97
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.96
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.96
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.95
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.95
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.95
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.95
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.95
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.95
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.95
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.95
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.94
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.94
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.94
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.94
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.94
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.94
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.94
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.94
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.94
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.94
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.94
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.94
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.94
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.94
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.94
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.94
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.94
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.94
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.94
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.94
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.94
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.94
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.94
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.94
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.94
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.94
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.94
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.94
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.94
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.94
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.94
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.94
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.94
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.94
3niz_A	311	Rhodanese family protein; structural genomics, str	99.94
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.94
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.94
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.93
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.93
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.93
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.93
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.93
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.93
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.93
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.93
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.93
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.93
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.93
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.93
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.93
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.93
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.93
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.93
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.93
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.93
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.93
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.93
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.93
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.93
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.93
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.93
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.93
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.93
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.93
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.93
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.93
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.93
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.93
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.93
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.93
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.93
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.93
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.93
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.93
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.93
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.93
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.93
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.93
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.93
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.93
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.93
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.93
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.93
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.93
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.93
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.93
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.93
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.93
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.93
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.93
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.93
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.93
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.93
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.93
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.93
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.93
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.93
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.92
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.92
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.92
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.92
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.92
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.92
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.92
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.92
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.92
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.92
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.92
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.92
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.92
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.92
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.92
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.92
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.92
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.92
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.92
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.92
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.92
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.92
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.92
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.92
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.92
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.92
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.92
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.92
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.92
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.92
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.92
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.92
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.92
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.92
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.92
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.92
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.92
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.92
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.92
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.92
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.92
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.92
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.92
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.92
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.92
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.92
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.92
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.92
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.92
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.92
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.92
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.92
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.92
3bhy_A	283	Death-associated protein kinase 3; death associate	99.92
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.92
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.92
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.92
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.92
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.92
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.92
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.92
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.92
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.91
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.91
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.91
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.91
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.91
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.91
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.91
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.91
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.91
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.91
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.91
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.91
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.91
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.91
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.91
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.91
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.91
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.91
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.91
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.91
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.91
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.91
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.91
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.91
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.91
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.91
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.91
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.91
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.91
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.91
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.91
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.91
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.91
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.91
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.91
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.91
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.91
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.91
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.91
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.91
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.9
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.9
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.9
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.9
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.9
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.9
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.9
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.9
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.9
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.9
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.9
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.9
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.89
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.89
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.89
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.89
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.89
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.89
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.89
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.88
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.88
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.86
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.84
3uqc_A	286	Probable conserved transmembrane protein; structur	99.81
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.64
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.37
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.1
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.53
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.81
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.53
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.36
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.33
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.13
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	95.95
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	95.46
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	94.39
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	93.85
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	93.63
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	93.56
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	93.08
3ats_A	357	Putative uncharacterized protein; hypothetical pro	92.93
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	92.43
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	90.25
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	90.04
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	89.63
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	89.3
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	89.23
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	89.06
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	86.91
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	86.78
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	86.48
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	85.22
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	83.68
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	83.53
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	81.27
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	81.15

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.7e-34  Score=237.62  Aligned_cols=180  Identities=19%  Similarity=0.185  Sum_probs=125.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~   94 (208)
                      ||+.++.++..+..   ...+++..+..++.|++.||+|||++   +|+||||||+|||++.++ .+||+|||+|+....
T Consensus       130 Ey~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~  203 (336)
T 4g3f_A          130 ELLEGGSLGQLIKQ---MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQP  203 (336)
T ss_dssp             CCCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred             eccCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccC
Confidence            45555555554433   35689999999999999999999999   999999999999999887 599999999987654


Q ss_pred             CCCc----eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhh-----hhhhhh
Q 042116           95 DQTR----TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLT-----YKCFID  165 (208)
Q Consensus        95 ~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~-----~~~~~~  165 (208)
                      ....    .....+||+.|+|||++.+..|+.++|||||||++|||+||+.||.......-...+....     .+...+
T Consensus       204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s  283 (336)
T 4g3f_A          204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCA  283 (336)
T ss_dssp             ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSC
T ss_pred             CCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCC
Confidence            3221    1223569999999999999999999999999999999999999997653322111111100     011112


Q ss_pred             h----hhhhcccCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 042116          166 R----EFDKLVHGEEVNKKTLENMIKSVVMMLEGITDISI  201 (208)
Q Consensus       166 ~----~~~~~~d~~~~~~~~~~~~~~~v~~~L~~~~~~~~  201 (208)
                      .    -+..++..++..+.++.++++.+...|+....+..
T Consensus       284 ~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~h  323 (336)
T 4g3f_A          284 PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKS  323 (336)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccC
Confidence            2    23444555555555666666666666765554443

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=234.04  Aligned_cols=128  Identities=25%  Similarity=0.308  Sum_probs=102.6

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.+|.+...+..  ....+++..+++|+.|||.||+|||+.   +||||||||+|||++.++.+||+|||+|+...
T Consensus       109 VmEy~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  183 (307)
T 3omv_A          109 VTQWCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS  183 (307)
T ss_dssp             EEECCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred             EEEcCCCCCHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecc
Confidence            4566666666655542  345799999999999999999999998   99999999999999999999999999998754


Q ss_pred             CCCC-ceeeeeecCCCcCchhhhhc---CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQT-RTFTLIRGTRGYMAPEWSKN---TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~-~~~~~~~g~~~y~aPE~~~~---~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... .......||+.|+|||++.+   .+|+.++|||||||++|||+||+.||...
T Consensus       184 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~  240 (307)
T 3omv_A          184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI  240 (307)
T ss_dssp             ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCC
Confidence            3222 22344569999999999964   46899999999999999999999999754

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=6e-34  Score=235.10  Aligned_cols=123  Identities=22%  Similarity=0.297  Sum_probs=104.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.+|. +.++..+   ..+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus       151 Ey~~gg~-L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  223 (346)
T 4fih_A          151 EFLEGGA-LTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  223 (346)
T ss_dssp             CCCTTEE-HHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred             eCCCCCc-HHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCC
Confidence            4444444 4444433   4689999999999999999999999   9999999999999999999999999999876443


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus       224 ~~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  273 (346)
T 4fih_A          224 VP-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  273 (346)
T ss_dssp             SC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CC-cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            22 233456999999999999999999999999999999999999999754

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=3e-33  Score=226.24  Aligned_cols=123  Identities=24%  Similarity=0.281  Sum_probs=101.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~   94 (208)
                      ||+.+|.+...+..   ...+++..+..++.||+.||+|||++ .++|+||||||+|||++. ++.+||+|||+|+....
T Consensus       109 Ey~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~  184 (290)
T 3fpq_A          109 ELMTSGTLKTYLKR---FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             ECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             eCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence            56666666655543   35789999999999999999999998 223999999999999974 78999999999976432


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .   .....+||+.|+|||++.+ .|+.++|||||||++|||+||+.||...
T Consensus       185 ~---~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~  232 (290)
T 3fpq_A          185 S---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  232 (290)
T ss_dssp             T---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             C---ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            2   2345579999999998865 6999999999999999999999999643

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=9e-34  Score=235.20  Aligned_cols=130  Identities=22%  Similarity=0.203  Sum_probs=110.5

Q ss_pred             ceEEeCCCCcchHHHHhhh-------------ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc
Q 042116           14 GCEVKGKRKQFGAVVRRRE-------------NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT   80 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~   80 (208)
                      ..||+.+|.+...+.....             ...+++..++.++.|||+||+|||++   +||||||||+|||++.++.
T Consensus       147 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~  223 (353)
T 4ase_A          147 IVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNV  223 (353)
T ss_dssp             EEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred             EEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeCCCCC
Confidence            4577777777777665433             24589999999999999999999999   9999999999999999999


Q ss_pred             EEEEecCCceecCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           81 AKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        81 ~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      +||+|||+|+........ ......||+.|+|||++.+..|+.++|||||||++|||+| |+.||...
T Consensus       224 vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~  291 (353)
T 4ase_A          224 VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  291 (353)
T ss_dssp             EEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             EEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence            999999999876544332 2334568999999999999999999999999999999998 89999754

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.2e-33  Score=228.63  Aligned_cols=125  Identities=23%  Similarity=0.365  Sum_probs=107.2

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.+|.++..+..   .+.+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus       112 Ey~~gG~L~~~i~~---~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          112 SYAKNGELLKYIRK---IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  185 (311)
T ss_dssp             CCCTTEEHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             ecCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence            45555555555543   35789999999999999999999999   9999999999999999999999999999987543


Q ss_pred             CC-ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......+||+.|+|||++.+..|+.++||||+||++|+|++|+.||...
T Consensus       186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  237 (311)
T 4aw0_A          186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  237 (311)
T ss_dssp             TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            32 2344567999999999999999999999999999999999999999754

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2e-33  Score=228.36  Aligned_cols=130  Identities=20%  Similarity=0.180  Sum_probs=109.8

Q ss_pred             ceEEeCCCCcchHHHHhh----------hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEE
Q 042116           14 GCEVKGKRKQFGAVVRRR----------ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKI   83 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl   83 (208)
                      ..||+.+|.+...+...+          ....+++..+++++.|||+||+|||+.   +|+||||||+|||++.++.+||
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki  169 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI  169 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEE
Confidence            456777777777776543          235799999999999999999999998   9999999999999999999999


Q ss_pred             EecCCceecCCCCCce-eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           84 SDFGLAKLLMPDQTRT-FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        84 ~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      +|||+++......... .....||+.|+|||++.+..|+.++|||||||++|||+| |+.||...
T Consensus       170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~  234 (299)
T 4asz_A          170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL  234 (299)
T ss_dssp             CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999998654333221 223458999999999999999999999999999999999 89999754

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.2e-33  Score=227.69  Aligned_cols=129  Identities=26%  Similarity=0.246  Sum_probs=101.7

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEeCCCCCcEEEcCCCcEEEEecCC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNEC-----EAPIIHCDIKPHNILMDEFWTAKISDFGL   88 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~nill~~~~~~kl~dfg~   88 (208)
                      ..||+.+|.+...+.    ...+++..+++++.|++.||+|||+.+     .++|+||||||+|||++.++.+||+|||+
T Consensus        79 V~Ey~~~gsL~~~l~----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  154 (303)
T 3hmm_A           79 VSDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEECCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EecCCCCCcHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence            445666666555543    346899999999999999999999862     45899999999999999999999999999


Q ss_pred             ceecCCCCCc---eeeeeecCCCcCchhhhhcC------CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           89 AKLLMPDQTR---TFTLIRGTRGYMAPEWSKNT------PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        89 ~~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~------~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++........   ......||+.|+|||++.+.      .++.++|||||||++|||+||+.|+...
T Consensus       155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~  221 (303)
T 3hmm_A          155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH  221 (303)
T ss_dssp             CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBC
T ss_pred             CccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcc
Confidence            9876543322   12235699999999998654      3577999999999999999998887543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.3e-33  Score=227.97  Aligned_cols=131  Identities=21%  Similarity=0.208  Sum_probs=109.6

Q ss_pred             cceEEeCCCCcchHHHHhhh-------------ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC
Q 042116           13 RGCEVKGKRKQFGAVVRRRE-------------NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW   79 (208)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~   79 (208)
                      ...||+.+|.+...+..+..             ...+++..+++++.|||+||+|||+.   +||||||||+|||++.++
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~  182 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL  182 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCC
Confidence            34567777777777754432             35689999999999999999999999   999999999999999999


Q ss_pred             cEEEEecCCceecCCCCC-ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           80 TAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        80 ~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+||+|||+++....... .......||+.|+|||++.+..|+.++|||||||++|||+| |+.||...
T Consensus       183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~  251 (308)
T 4gt4_A          183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY  251 (308)
T ss_dssp             CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC
T ss_pred             CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC
Confidence            999999999986543222 12233458999999999999999999999999999999998 89999754

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=231.57  Aligned_cols=124  Identities=22%  Similarity=0.281  Sum_probs=105.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.+|.++ ++..   ...+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+....
T Consensus       227 mEy~~gG~L~-~~i~---~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~  299 (423)
T 4fie_A          227 MEFLEGGALT-DIVT---HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  299 (423)
T ss_dssp             EECCTTEEHH-HHHH---HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred             EeCCCCCcHH-HHHh---ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCC
Confidence            3555555444 4443   34689999999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||...
T Consensus       300 ~~~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  350 (423)
T 4fie_A          300 EVP-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  350 (423)
T ss_dssp             SCC-CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCc-cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            332 233456999999999999999999999999999999999999999754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.98  E-value=3.1e-33  Score=230.04  Aligned_cols=130  Identities=18%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             ceEEeCCCCcchHHHHhh------------hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcE
Q 042116           14 GCEVKGKRKQFGAVVRRR------------ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTA   81 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~   81 (208)
                      ..||+.+|.+...+...+            ....+++..+++|+.|||.||+|||+.   +|+||||||+|||++.++.+
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~  197 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVV  197 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcE
Confidence            456677777666655432            234689999999999999999999998   99999999999999999999


Q ss_pred             EEEecCCceecCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           82 KISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        82 kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |+.||...
T Consensus       198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~  264 (329)
T 4aoj_A          198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL  264 (329)
T ss_dssp             EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS
T ss_pred             EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC
Confidence            99999999876433322 2234568999999999999999999999999999999999 89999754

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.98  E-value=4.3e-33  Score=226.53  Aligned_cols=124  Identities=24%  Similarity=0.289  Sum_probs=103.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.+|.++..+..   ...+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus       106 Ey~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          106 DFLRGGDLFTRLSK---EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  179 (304)
T ss_dssp             CCCTTCEEHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred             EcCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence            44555555555543   35789999999999999999999999   9999999999999999999999999999865332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .....+||+.|+|||++.+..|+.++||||+||++|||+||+.||...
T Consensus       180 ~~-~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          180 EK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             -C-CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Cc-cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence            22 223456999999999999999999999999999999999999999754

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.98  E-value=1.8e-33  Score=232.63  Aligned_cols=127  Identities=23%  Similarity=0.331  Sum_probs=106.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.+|.++..+ .......+++..++.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       102 mEy~~gg~L~~~i-~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  177 (350)
T 4b9d_A          102 MDYCEGGDLFKRI-NAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS  177 (350)
T ss_dssp             EECCTTCBHHHHH-HHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred             EeCCCCCcHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence            3555555555544 444556678889999999999999999999   999999999999999999999999999987532


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus       178 ~~-~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~  228 (350)
T 4b9d_A          178 TV-ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG  228 (350)
T ss_dssp             HH-HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             Cc-ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            21 1223456999999999999999999999999999999999999999754

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.98  E-value=2.6e-32  Score=219.12  Aligned_cols=123  Identities=26%  Similarity=0.442  Sum_probs=94.7

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+ +|.++..+..   ...++...+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+....
T Consensus        92 mEy~-~g~L~~~l~~---~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  164 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQ---RDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD  164 (275)
T ss_dssp             EECC-CEEHHHHHHH---SCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred             EeCC-CCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence            3454 3444444433   45799999999999999999999999   999999999999999999999999999986543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..  .....+||+.|+|||++.+..+ +.++||||+||++|+|+||+.||...
T Consensus       165 ~~--~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~  215 (275)
T 3hyh_A          165 GN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE  215 (275)
T ss_dssp             ------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CC--ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC
Confidence            22  2234569999999999988776 57999999999999999999999743

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=2.7e-32  Score=221.75  Aligned_cols=124  Identities=27%  Similarity=0.409  Sum_probs=96.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+..+....+.++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+....
T Consensus        94 mE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~  170 (299)
T 4g31_A           94 MQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQ  170 (299)
T ss_dssp             EECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCCCC-----
T ss_pred             EecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEccCccceecCC
Confidence            35556666655555555556777888899999999999999999   999999999999999999999999999987643


Q ss_pred             CCCc-----------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           95 DQTR-----------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        95 ~~~~-----------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ....           .....+||+.|+|||++.+..|+.++|||||||++|||++   ||.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~  228 (299)
T 4g31_A          171 DEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFS  228 (299)
T ss_dssp             ---------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCS
T ss_pred             CccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCC
Confidence            3221           1223469999999999999999999999999999999996   764

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.97  E-value=1.2e-30  Score=217.23  Aligned_cols=122  Identities=20%  Similarity=0.236  Sum_probs=98.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~~   94 (208)
                      ||+.++.++. +.     +.++...+..++.|++.||+|||+.   +|+||||||+|||++.+ +.+||+|||+|+....
T Consensus       100 E~~~g~~L~~-~~-----~~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A          100 PYLEHESFLD-IL-----NSLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             ECCCCCCHHH-HH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECTT
T ss_pred             eCCCcccHHH-HH-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCC
Confidence            4455444443 33     3588999999999999999999999   99999999999999876 7899999999986533


Q ss_pred             CCC---------------------------ceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQT---------------------------RTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~---------------------------~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...                           ......+||+.|+|||++.+. .++.++||||+||++|+|++|+.||...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~  250 (361)
T 4f9c_A          171 TKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKA  250 (361)
T ss_dssp             CSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCC
Confidence            211                           112234699999999998765 4899999999999999999999999755

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.3e-30  Score=217.97  Aligned_cols=112  Identities=24%  Similarity=0.328  Sum_probs=95.9

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC---CceeeeeecCCC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRG  108 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~g~~~  108 (208)
                      ....++...+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.+....   .......+||+.
T Consensus       151 ~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~  227 (398)
T 4b99_A          151 SSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRW  227 (398)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCT
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChH
Confidence            346799999999999999999999999   99999999999999999999999999998654321   112334579999


Q ss_pred             cCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus       228 Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~  266 (398)
T 4b99_A          228 YRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK  266 (398)
T ss_dssp             TCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             hcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC
Confidence            9999998765 4689999999999999999999999754

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.96  E-value=3.2e-30  Score=227.61  Aligned_cols=123  Identities=23%  Similarity=0.258  Sum_probs=105.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.+|.++..+..   ...++...+..++.||+.||.|||+.   +||||||||+|||++.+|.+||+|||+|+....
T Consensus       271 mEy~~GGdL~~~l~~---~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~  344 (689)
T 3v5w_A          271 LDLMNGGDLHYHLSQ---HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK  344 (689)
T ss_dssp             ECCCCSCBHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             EecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecCC
Confidence            355666666666543   35689999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCceeeeeecCCCcCchhhhh-cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...   ...+||+.|+|||++. +..|+.++|+||+||++|||++|+.||...
T Consensus       345 ~~~---~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~  394 (689)
T 3v5w_A          345 KKP---HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  394 (689)
T ss_dssp             CCC---CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGG
T ss_pred             CCC---CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            332   3346999999999996 457899999999999999999999999754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.96  E-value=4.7e-29  Score=218.81  Aligned_cols=125  Identities=22%  Similarity=0.343  Sum_probs=106.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC--CcEEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF--WTAKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~--~~~kl~dfg~~~~~   92 (208)
                      .||+.+|.++..+..  ....+++..+..++.||+.||.|||++   +|+||||||+|||++.+  +.+||+|||+++.+
T Consensus       233 ~E~~~gg~L~~~i~~--~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~  307 (573)
T 3uto_A          233 YEFMSGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  307 (573)
T ss_dssp             EECCCCCBHHHHHTC--TTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEEC
T ss_pred             EeecCCCcHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEc
Confidence            456666666655432  345688999999999999999999999   99999999999999854  78999999999987


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  .....+||+.|+|||++.+..|+.++||||+||++|+|++|+.||...
T Consensus       308 ~~~~--~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~  359 (573)
T 3uto_A          308 DPKQ--SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  359 (573)
T ss_dssp             CTTS--EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             cCCC--ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            5433  334557999999999999999999999999999999999999999754

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.95  E-value=1.6e-28  Score=200.62  Aligned_cols=159  Identities=30%  Similarity=0.511  Sum_probs=119.1

Q ss_pred             EEeCCCCcchHHHHhh--hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           16 EVKGKRKQFGAVVRRR--ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      +|+.++ ++..+....  ....+++..+..++.|++.||.|||+.+.++|+||||||+||+++.++.+||+|||+++...
T Consensus       107 e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  185 (326)
T 3uim_A          107 PYMANG-SVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD  185 (326)
T ss_dssp             ECCTTC-BHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             EeccCC-CHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccC
Confidence            344444 444444433  23458999999999999999999999877899999999999999999999999999998775


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC-CCccchhhhhhhhhhhhhhhhhhcc
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP-SKPEEIVFINLTYKCFIDREFDKLV  172 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  172 (208)
                      ...........||+.|+|||.+.+..++.++||||||+++|+|++|+.||.... ..........|.........+..+.
T Consensus       186 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (326)
T 3uim_A          186 YKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALV  265 (326)
T ss_dssp             SSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSS
T ss_pred             cccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhc
Confidence            444444444568999999999988889999999999999999999999996321 1122333444544444444444444


Q ss_pred             cCC
Q 042116          173 HGE  175 (208)
Q Consensus       173 d~~  175 (208)
                      +..
T Consensus       266 ~~~  268 (326)
T 3uim_A          266 DVD  268 (326)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            433

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.95  E-value=1.2e-28  Score=204.86  Aligned_cols=128  Identities=18%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             EEeCCCCcchHHHHhh--hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-----------CCcEE
Q 042116           16 EVKGKRKQFGAVVRRR--ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-----------FWTAK   82 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----------~~~~k   82 (208)
                      ||+.++.+...+....  ....+++..++.++.|++.||+|||+.   +|+||||||+|||++.           ++.+|
T Consensus       147 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~k  223 (365)
T 3e7e_A          147 ELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLA  223 (365)
T ss_dssp             CCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC------CTTEE
T ss_pred             eccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccccccCCEE
Confidence            3444444444444333  346799999999999999999999998   9999999999999988           89999


Q ss_pred             EEecCCceecCCC-CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           83 ISDFGLAKLLMPD-QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        83 l~dfg~~~~~~~~-~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||+++..... .........||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       224 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          224 LIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             ECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             EeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence            9999999765322 222334456999999999999999999999999999999999999998654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.95  E-value=4.9e-28  Score=201.10  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=103.2

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc--CCCcEEEEecCCceecCCCCCc
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD--EFWTAKISDFGLAKLLMPDQTR   98 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~dfg~~~~~~~~~~~   98 (208)
                      ++++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+|||++  .++.+||+|||+++........
T Consensus       135 g~~L~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~  210 (364)
T 3op5_A          135 GSDLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVH  210 (364)
T ss_dssp             EEEHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCC
T ss_pred             CCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcc
Confidence            5566666544 346799999999999999999999999   999999999999998  8899999999999876432211


Q ss_pred             ------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 ------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                            ......||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       211 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~  264 (364)
T 3op5_A          211 KAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDN  264 (364)
T ss_dssp             CCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             cccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence                  112334899999999999988999999999999999999999999854

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.95  E-value=1.8e-27  Score=194.19  Aligned_cols=156  Identities=24%  Similarity=0.399  Sum_probs=114.6

Q ss_pred             eEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .+|+.++.+...+.... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       114 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  190 (321)
T 2qkw_B          114 YKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGT  190 (321)
T ss_dssp             EECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEECS
T ss_pred             EEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            34444444444332221 123589999999999999999999998   99999999999999999999999999998654


Q ss_pred             CCCC-ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCCCccchhhhhhhhhhhhhhhhhhcc
Q 042116           94 PDQT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV  172 (208)
Q Consensus        94 ~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (208)
                      .... .......||+.|+|||.+.+..++.++||||||+++|+|++|+.||..... .+......|.......+.+..++
T Consensus       191 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  269 (321)
T 2qkw_B          191 ELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLP-REMVNLAEWAVESHNNGQLEQIV  269 (321)
T ss_dssp             SSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSS-SSCCCHHHHTHHHHTTTCCCSSS
T ss_pred             cccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCc-HHHHHHHHHhhhccccccHHHhc
Confidence            3222 122334589999999999888899999999999999999999999976532 23333444444444444444444


Q ss_pred             cC
Q 042116          173 HG  174 (208)
Q Consensus       173 d~  174 (208)
                      ++
T Consensus       270 ~~  271 (321)
T 2qkw_B          270 DP  271 (321)
T ss_dssp             SS
T ss_pred             Ch
Confidence            44

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.95  E-value=2.6e-27  Score=199.32  Aligned_cols=125  Identities=22%  Similarity=0.312  Sum_probs=104.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.++..+..   ...+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       132 ~E~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          132 IEYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             EECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEcCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence            344555555444433   35689999999999999999999999   999999999999999999999999999976332


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... .....+||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       206 ~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~  256 (396)
T 4dc2_A          206 PGD-TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  256 (396)
T ss_dssp             TTC-CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             CCC-ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence            222 233456999999999999999999999999999999999999999754

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.95  E-value=3.1e-28  Score=198.32  Aligned_cols=128  Identities=25%  Similarity=0.412  Sum_probs=96.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP--IIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      .+|+.++.+...+........+++..++.++.|++.||+|||+.   +  |+||||||+||+++.++.+||+|||+++..
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~  189 (309)
T 3p86_A          113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK  189 (309)
T ss_dssp             EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-----
T ss_pred             EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCccc
Confidence            34444444444444333445699999999999999999999998   7  999999999999999999999999999754


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       190 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~  242 (309)
T 3p86_A          190 ASTFL-SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL  242 (309)
T ss_dssp             -------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred             ccccc-ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            33221 123345899999999999988999999999999999999999999754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.95  E-value=6.8e-28  Score=205.26  Aligned_cols=125  Identities=21%  Similarity=0.280  Sum_probs=103.6

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~   96 (208)
                      |+.++ .+..+... ....+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++......
T Consensus       155 y~~gg-~L~~~l~~-~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~  229 (437)
T 4aw2_A          155 YYVGG-DLLTLLSK-FEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG  229 (437)
T ss_dssp             CCTTC-BHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred             cCCCC-cHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhcccCC
Confidence            33444 44444432 245689999999999999999999999   99999999999999999999999999998765544


Q ss_pred             CceeeeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 TRTFTLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 ~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .......+||+.|+|||++.     ...++.++|+|||||++|||++|+.||...
T Consensus       230 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~  284 (437)
T 4aw2_A          230 TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  284 (437)
T ss_dssp             CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence            43334456999999999987     456899999999999999999999999754

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.95  E-value=6.6e-27  Score=188.35  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=103.1

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc-----EEEEecCCceecCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT-----AKISDFGLAKLLMPD   95 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-----~kl~dfg~~~~~~~~   95 (208)
                      ++++..+.... ...++...+..++.|++.||+|||+.   +|+||||||+||+++.++.     +||+|||+++.....
T Consensus        89 ~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~  164 (298)
T 1csn_A           89 GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  164 (298)
T ss_dssp             CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccc
Confidence            55666665442 34689999999999999999999998   9999999999999987765     999999999876543


Q ss_pred             CCc------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           96 QTR------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        96 ~~~------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ...      ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||....
T Consensus       165 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  222 (298)
T 1csn_A          165 VTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  222 (298)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             cccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhh
Confidence            221      1233458999999999999889999999999999999999999998653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.7e-27  Score=192.98  Aligned_cols=126  Identities=20%  Similarity=0.251  Sum_probs=102.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE----cCCCcEEEEecCCcee
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKL   91 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~dfg~~~~   91 (208)
                      +|+.++.+...+........+++..++.++.|++.||.|||+.   +|+||||||+||++    +.++.+||+|||+++.
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence            3444444444443333444599999999999999999999999   99999999999999    7788899999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhh--------cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSK--------NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~--------~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......  .....||+.|+|||++.        +..++.++|||||||++|+|++|+.||...
T Consensus       166 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  226 (319)
T 4euu_A          166 LEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF  226 (319)
T ss_dssp             CCTTCC--BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECT
T ss_pred             cCCCCc--eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            654332  22345899999999986        467889999999999999999999999754

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.94  E-value=6.2e-27  Score=191.86  Aligned_cols=123  Identities=19%  Similarity=0.211  Sum_probs=104.5

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc-----EEEEecCCceecCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT-----AKISDFGLAKLLMPD   95 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-----~kl~dfg~~~~~~~~   95 (208)
                      ++++.++.... ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.     +||+|||+++.....
T Consensus        88 ~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~  163 (330)
T 2izr_A           88 GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDP  163 (330)
T ss_dssp             CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCT
T ss_pred             CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecC
Confidence            55666666543 46799999999999999999999999   9999999999999998887     999999999876443


Q ss_pred             CCce------eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           96 QTRT------FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        96 ~~~~------~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ....      .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||....
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~  221 (330)
T 2izr_A          164 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK  221 (330)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             CCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc
Confidence            2211      234568999999999999999999999999999999999999998653

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.94  E-value=1.1e-26  Score=186.81  Aligned_cols=123  Identities=24%  Similarity=0.194  Sum_probs=103.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCceecCCCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ++++..+... ....+++..+..++.|++.||.|||+.   +|+||||||+||++   +.++.+||+|||+++.......
T Consensus        88 ~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~  163 (296)
T 4hgt_A           88 GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART  163 (296)
T ss_dssp             CCBHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             CCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCccc
Confidence            5566665543 345689999999999999999999999   99999999999999   7889999999999987644322


Q ss_pred             c------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           98 R------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        98 ~------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      .      ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||....
T Consensus       164 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  219 (296)
T 4hgt_A          164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  219 (296)
T ss_dssp             CCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             CccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccc
Confidence            1      1223458999999999999899999999999999999999999998653

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.94  E-value=2e-27  Score=192.00  Aligned_cols=120  Identities=25%  Similarity=0.346  Sum_probs=96.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++..+...  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++...........
T Consensus        96 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  170 (294)
T 4eqm_A           96 PTLSEYIES--HGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTN  170 (294)
T ss_dssp             CBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC---------
T ss_pred             CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccC
Confidence            344444433  34689999999999999999999999   9999999999999999999999999999765433333333


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...||+.|+|||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       171 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~  215 (294)
T 4eqm_A          171 HVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE  215 (294)
T ss_dssp             ----CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             ccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            456899999999999988999999999999999999999999754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.94  E-value=3.4e-27  Score=194.74  Aligned_cols=121  Identities=19%  Similarity=0.254  Sum_probs=100.1

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC--cEEEEecCCceecCCCCCc
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW--TAKISDFGLAKLLMPDQTR   98 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~--~~kl~dfg~~~~~~~~~~~   98 (208)
                      ++++..+....  ..+++..++.++.|++.||+|||+.   +|+||||||+||+++.++  .+||+|||+++........
T Consensus       135 ~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~  209 (345)
T 2v62_A          135 GIDLQKISGQN--GTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNH  209 (345)
T ss_dssp             EEEHHHHCBGG--GBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCC
T ss_pred             CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCcEEEEeCCCceeccccccc
Confidence            34454444332  3789999999999999999999999   999999999999998877  9999999999876432111


Q ss_pred             ------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 ------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                            ......||..|+|||++.+..++.++||||||+++|+|++|+.||...
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  263 (345)
T 2v62_A          210 KQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQN  263 (345)
T ss_dssp             CCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred             ccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence                  112345899999999999988999999999999999999999999653

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.94  E-value=1.1e-26  Score=195.76  Aligned_cols=126  Identities=21%  Similarity=0.285  Sum_probs=97.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~   92 (208)
                      ||+.++ .+...........+++..+..++.|++.||.|||+.   +|+||||||+|||++.   ++.+||+|||+++..
T Consensus       139 E~~~gg-~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~  214 (400)
T 1nxk_A          139 ECLDGG-ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET  214 (400)
T ss_dssp             ECCCSE-EHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             EeCCCC-cHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEeccccccc
Confidence            333333 444444444456789999999999999999999998   9999999999999987   788999999999875


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ....  ......||+.|+|||++.+..++.++|||||||++|+|++|+.||....
T Consensus       215 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  267 (400)
T 1nxk_A          215 TSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  267 (400)
T ss_dssp             C-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCT
T ss_pred             CCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence            4322  2234458999999999998899999999999999999999999997653

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.94  E-value=8.4e-27  Score=188.71  Aligned_cols=119  Identities=23%  Similarity=0.340  Sum_probs=101.2

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+...   ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......... .
T Consensus       101 ~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~  173 (297)
T 3fxz_A          101 GGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-R  173 (297)
T ss_dssp             TCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-B
T ss_pred             CCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc-c
Confidence            3344444433   3688999999999999999999999   9999999999999999999999999999876543332 2


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       174 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  219 (297)
T 3fxz_A          174 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (297)
T ss_dssp             CCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            3345899999999999999999999999999999999999999644

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.94  E-value=9e-27  Score=192.83  Aligned_cols=128  Identities=23%  Similarity=0.269  Sum_probs=104.5

Q ss_pred             eEEeCCCCcchHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCce
Q 042116           15 CEVKGKRKQFGAVVRRRE-NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAK   90 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~   90 (208)
                      .||+.++.+...+..+.. ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.   +||+|||+++
T Consensus       105 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~  181 (351)
T 3c0i_A          105 FEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVAI  181 (351)
T ss_dssp             EECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTCE
T ss_pred             EeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCccee
Confidence            345555555555555433 34588999999999999999999999   9999999999999976554   9999999998


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       182 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  236 (351)
T 3c0i_A          182 QLGESGL-VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT  236 (351)
T ss_dssp             ECCTTSC-BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             EecCCCe-eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc
Confidence            7654322 123345899999999999888999999999999999999999999743

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.94  E-value=2.3e-27  Score=196.86  Aligned_cols=125  Identities=23%  Similarity=0.329  Sum_probs=100.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       103 ~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~  176 (353)
T 3txo_A          103 MEFVNGGDLMFHIQK---SRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC  176 (353)
T ss_dssp             EECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             EeCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence            345555555544433   35689999999999999999999999   999999999999999999999999999975432


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. ......+||+.|+|||++.+..++.++|+||+||++|+|++|+.||...
T Consensus       177 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  227 (353)
T 3txo_A          177 NG-VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE  227 (353)
T ss_dssp             ----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CC-ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC
Confidence            22 2233456999999999998888999999999999999999999999754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.94  E-value=2.3e-26  Score=205.33  Aligned_cols=126  Identities=22%  Similarity=0.278  Sum_probs=105.8

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.++.++..+...   ..+++..++.++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       420 V~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~  493 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  493 (674)
T ss_dssp             EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred             EEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence            34555555555554432   4689999999999999999999999   99999999999999999999999999998643


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......||+.|+|||++.+..++.++|+|||||++|||++|+.||...
T Consensus       494 ~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~  545 (674)
T 3pfq_A          494 WDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  545 (674)
T ss_dssp             CTTC-CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCc-ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC
Confidence            3222 233456999999999999999999999999999999999999999754

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.2e-27  Score=199.78  Aligned_cols=124  Identities=20%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             eCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC
Q 042116           18 KGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      +.++.+...+..  ....+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.......
T Consensus       143 ~~gg~L~~~l~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~  217 (412)
T 2vd5_A          143 YVGGDLLTLLSK--FGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGT  217 (412)
T ss_dssp             CCSCBHHHHHHH--HSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSC
T ss_pred             CCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheeccCCCc
Confidence            334444444432  234788999999999999999999999   999999999999999999999999999987655443


Q ss_pred             ceeeeeecCCCcCchhhhh-------cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSK-------NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~-------~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......+||+.|+|||++.       ...++.++|+|||||++|||++|+.||...
T Consensus       218 ~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  273 (412)
T 2vd5_A          218 VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD  273 (412)
T ss_dssp             EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC
Confidence            3333456999999999987       356889999999999999999999999754

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.94  E-value=1.1e-26  Score=192.04  Aligned_cols=109  Identities=24%  Similarity=0.363  Sum_probs=96.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+|||
T Consensus       105 ~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~-~~~~~~gt~~y~aPE  180 (345)
T 3a8x_A          105 RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD-TTSTFCGTPNYIAPE  180 (345)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC-CBCCCCSCGGGCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCCCC-cccccCCCccccCcc
Confidence            5689999999999999999999999   999999999999999999999999999976432222 233456999999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++|+||+||++|+|++|+.||...
T Consensus       181 ~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  213 (345)
T 3a8x_A          181 ILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  213 (345)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred             ccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence            999988999999999999999999999999753

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.94  E-value=5.6e-27  Score=190.14  Aligned_cols=120  Identities=22%  Similarity=0.252  Sum_probs=103.4

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+...........+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus       103 ~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~--~~  177 (308)
T 3g33_A          103 QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA--LT  177 (308)
T ss_dssp             CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC--SG
T ss_pred             cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc--cC
Confidence            4666666655556699999999999999999999999   999999999999999999999999999976533222  23


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...||+.|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       178 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  222 (308)
T 3g33_A          178 PVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  222 (308)
T ss_dssp             GGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS
T ss_pred             CccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            345899999999999889999999999999999999999999754

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.94  E-value=4.5e-27  Score=194.39  Aligned_cols=124  Identities=12%  Similarity=0.147  Sum_probs=105.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC--cEEEEecCCceecCCCCCc
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW--TAKISDFGLAKLLMPDQTR   98 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~--~~kl~dfg~~~~~~~~~~~   98 (208)
                      ++++..+........+++..++.++.|++.||.|||+.   +|+||||||+||+++.++  .+||+|||+++........
T Consensus       141 ~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~  217 (352)
T 2jii_A          141 GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKH  217 (352)
T ss_dssp             CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCC
T ss_pred             CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCcc
Confidence            56777777665567899999999999999999999999   999999999999999998  8999999999765432111


Q ss_pred             ------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           99 ------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        99 ------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                            ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||....
T Consensus       218 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  272 (352)
T 2jii_A          218 VAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL  272 (352)
T ss_dssp             CCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             ccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence                  1122358999999999998889999999999999999999999998653

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.94  E-value=3.1e-26  Score=184.26  Aligned_cols=123  Identities=24%  Similarity=0.194  Sum_probs=103.2

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCceecCCCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ++++..+... ....++...++.++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++.......
T Consensus        88 ~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~  163 (296)
T 3uzp_A           88 GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART  163 (296)
T ss_dssp             CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             CCCHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccc
Confidence            4566665543 345689999999999999999999999   99999999999999   4788999999999987654332


Q ss_pred             c------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116           98 R------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        98 ~------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      .      ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||....
T Consensus       164 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  219 (296)
T 3uzp_A          164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  219 (296)
T ss_dssp             CCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             ccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcC
Confidence            1      1233458999999999999889999999999999999999999998653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.94  E-value=1.9e-27  Score=194.90  Aligned_cols=127  Identities=21%  Similarity=0.233  Sum_probs=102.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .++..++.+...+..  ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        95 ~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~  169 (327)
T 3poz_A           95 TQLMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  169 (327)
T ss_dssp             EECCTTCBHHHHHHH--STTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred             EEecCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence            344445555544433  345689999999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .... ......+|..|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  223 (327)
T 3poz_A          170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  223 (327)
T ss_dssp             TCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC
Confidence            3332 2223346789999999999999999999999999999999 99999754

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.94  E-value=7.5e-27  Score=193.77  Aligned_cols=124  Identities=23%  Similarity=0.293  Sum_probs=103.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+..   ...++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       101 E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  174 (353)
T 2i0e_A          101 EYVNGGDLMYHIQQ---VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD  174 (353)
T ss_dssp             ECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             eCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccccC
Confidence            44445545444432   24688999999999999999999999   9999999999999999999999999999764322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .....+||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       175 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  224 (353)
T 2i0e_A          175 GV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  224 (353)
T ss_dssp             TC-CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Cc-ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence            22 233456999999999999889999999999999999999999999754

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=8.9e-27  Score=190.73  Aligned_cols=108  Identities=24%  Similarity=0.358  Sum_probs=96.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC--CCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE--FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ..+++..+..++.|++.||.|||+.   +|+||||||+||+++.  ++.+||+|||+++......  ......||+.|+|
T Consensus        97 ~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~a  171 (321)
T 1tki_A           97 FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD--NFRLLFTAPEYYA  171 (321)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC--EEEEEESCGGGSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC--ccccccCChhhcC
Confidence            4689999999999999999999999   9999999999999987  7899999999998765433  2344568999999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+..++.++||||+|+++|+|++|+.||...
T Consensus       172 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  206 (321)
T 1tki_A          172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence            99998888899999999999999999999999754

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.94  E-value=2.4e-26  Score=190.22  Aligned_cols=119  Identities=24%  Similarity=0.300  Sum_probs=103.7

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-----------------------
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-----------------------   77 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----------------------   77 (208)
                      ++.+..+........++...+..++.|++.||+|||+.   +|+||||||+|||++.                       
T Consensus       119 ~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~  195 (360)
T 3llt_A          119 GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYR  195 (360)
T ss_dssp             CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEE
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhcccccccccccc
Confidence            55666777666667799999999999999999999999   9999999999999975                       


Q ss_pred             --CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           78 --FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        78 --~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        ++.+||+|||+++......    ....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       196 ~~~~~~kl~DFG~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          196 TKSTGIKLIDFGCATFKSDYH----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             ESCCCEEECCCTTCEETTSCC----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cCCCCEEEEeccCceecCCCC----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence              7889999999998753322    2345899999999999999999999999999999999999999754

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.94  E-value=6.9e-27  Score=194.94  Aligned_cols=110  Identities=24%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........ ......+++.|+||
T Consensus       198 ~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  274 (370)
T 2psq_A          198 EQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  274 (370)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECH
Confidence            4578999999999999999999999   9999999999999999999999999999876433221 11223367889999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|||||||++|||++ |+.||...
T Consensus       275 E~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~  309 (370)
T 2psq_A          275 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  309 (370)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             hHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999899999999999999999999 99998754

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.94  E-value=9.7e-27  Score=191.95  Aligned_cols=125  Identities=26%  Similarity=0.347  Sum_probs=103.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        84 ~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  157 (337)
T 1o6l_A           84 MEYANGGELFFHLSR---ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             EECCTTCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             EeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence            344455555444432   35688999999999999999999999   999999999999999999999999999976433


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       158 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  208 (337)
T 1o6l_A          158 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             TTC-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCC-cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence            222 223446899999999999888999999999999999999999999744

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.94  E-value=5.9e-27  Score=191.10  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=96.3

Q ss_pred             eEEeCCCCcchHHHHhhhc---cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           15 CEVKGKRKQFGAVVRRREN---KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .+|+.++.+...+......   ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       110 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~  186 (323)
T 3qup_A          110 LPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADFGLSRK  186 (323)
T ss_dssp             EECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             EEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEeecccccc
Confidence            3444454444444433222   2589999999999999999999999   999999999999999999999999999976


Q ss_pred             cCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           92 LMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....... ......+++.|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       187 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~  243 (323)
T 3qup_A          187 IYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGI  243 (323)
T ss_dssp             --------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcccc
Confidence            5433221 1223346778999999999999999999999999999999 89998754

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.94  E-value=1.2e-26  Score=190.63  Aligned_cols=122  Identities=22%  Similarity=0.322  Sum_probs=101.0

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~   96 (208)
                      |+.++.++..+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++.......
T Consensus        95 ~~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  168 (328)
T 3fe3_A           95 YASGGEVFDYLVA---HGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG  168 (328)
T ss_dssp             CCTTCBHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred             CCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence            3444444444433   25688999999999999999999999   99999999999999999999999999997654332


Q ss_pred             CceeeeeecCCCcCchhhhhcCCCC-ccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 TRTFTLIRGTRGYMAPEWSKNTPIS-MKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 ~~~~~~~~g~~~y~aPE~~~~~~~~-~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .  .....||+.|+|||.+.+..+. .++||||+||++|+|++|+.||...
T Consensus       169 ~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  217 (328)
T 3fe3_A          169 K--LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ  217 (328)
T ss_dssp             G--GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             c--cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence            2  2334589999999999887764 7899999999999999999999754

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.94  E-value=1.9e-26  Score=191.90  Aligned_cols=123  Identities=25%  Similarity=0.374  Sum_probs=102.2

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC----cEEEEecCCcee
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW----TAKISDFGLAKL   91 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~dfg~~~~   91 (208)
                      +|+.++.++..+.   ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++    .+||+|||+++.
T Consensus        95 e~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           95 ELVSGGELFDFLA---QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             ECCCSCBHHHHHT---TCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            4444444444432   245689999999999999999999999   999999999999998776    799999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......  .....||+.|+|||++.+..++.++|+||+||++|+|++|..||...
T Consensus       169 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~  221 (361)
T 2yab_A          169 IEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (361)
T ss_dssp             CCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             cCCCCc--cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            644322  23345899999999999888999999999999999999999999754

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.94  E-value=1.2e-26  Score=192.09  Aligned_cols=124  Identities=22%  Similarity=0.259  Sum_probs=103.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+..   ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        98 E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  171 (345)
T 1xjd_A           98 EYLNGGDLMYHIQS---CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG  171 (345)
T ss_dssp             ECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             eCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhcccC
Confidence            44445545444432   35688999999999999999999999   9999999999999999999999999999764332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .....+||+.|+|||++.+..++.++|+||+||++|+|++|+.||...
T Consensus       172 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (345)
T 1xjd_A          172 DA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  221 (345)
T ss_dssp             TC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CC-cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence            22 233456999999999999988999999999999999999999999754

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.94  E-value=8.3e-27  Score=190.80  Aligned_cols=127  Identities=19%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|..++.+...+..  ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        93 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~  167 (325)
T 3kex_A           93 TQYLPLGSLLDHVRQ--HRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPP  167 (325)
T ss_dssp             EECCTTCBSHHHHHS--SGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred             EEeCCCCCHHHHHHH--ccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence            344444545444432  245788889999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .... ......++..|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  221 (325)
T 3kex_A          168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGL  221 (325)
T ss_dssp             CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCcccc
Confidence            3322 2234457889999999998899999999999999999999 99999755

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.94  E-value=3.2e-26  Score=189.72  Aligned_cols=121  Identities=22%  Similarity=0.251  Sum_probs=102.1

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       121 e~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~  194 (350)
T 1rdq_E          121 EYVAGGEMFSHLRR---IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR  194 (350)
T ss_dssp             ECCTTCBHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             cCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCC
Confidence            44444444444433   24688999999999999999999999   9999999999999999999999999999876432


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          .....||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       195 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  241 (350)
T 1rdq_E          195 ----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             ----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence                22345899999999999888999999999999999999999999754

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.94  E-value=1.9e-26  Score=200.96  Aligned_cols=127  Identities=28%  Similarity=0.336  Sum_probs=105.0

Q ss_pred             EEeCCCCcchHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRE-NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      +|+.++.+...+..... ...+++..+..++.||+.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKA  341 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence            33444444444433322 45789999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... .....||+.|+|||++.+..++.++|+|||||++|||++|+.||...
T Consensus       342 ~~~~-~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          342 GQTK-TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             TCCC-BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             CCcc-cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence            3322 23346999999999999988999999999999999999999999765

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=197.58  Aligned_cols=124  Identities=21%  Similarity=0.309  Sum_probs=103.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc---CCCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~dfg~~~~~   92 (208)
                      +|+.++.++..+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++   .++.+||+|||++...
T Consensus        90 E~~~gg~L~~~i~~---~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~  163 (444)
T 3soa_A           90 DLVTGGELFEDIVA---REYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEV  163 (444)
T ss_dssp             CCCBCCBHHHHHHH---CSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred             EeCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence            44555555555543   35688999999999999999999999   999999999999998   4678999999999776


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       164 ~~~~~~-~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          164 EGEQQA-WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             CTTCCB-CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cCCCce-eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence            443222 23345899999999999888999999999999999999999999644

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.94  E-value=4.9e-27  Score=196.02  Aligned_cols=102  Identities=19%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhh
Q 042116           37 ESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSK  116 (208)
Q Consensus        37 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  116 (208)
                      ++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....    ......| +.|+|||++.
T Consensus       204 ~~~~~~~i~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~  275 (377)
T 3byv_A          204 VHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEA  275 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhc
Confidence            3578888999999999999999   999999999999999999999999999986422    2334457 9999999998


Q ss_pred             cC-----------CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          117 NT-----------PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       117 ~~-----------~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.           .++.++|||||||++|+|++|+.||...
T Consensus       276 ~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~  316 (377)
T 3byv_A          276 RRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKD  316 (377)
T ss_dssp             HHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccc
Confidence            77           7899999999999999999999999754

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.94  E-value=1.2e-26  Score=196.08  Aligned_cols=110  Identities=22%  Similarity=0.293  Sum_probs=97.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.............+||+.|+|||
T Consensus       163 ~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE  239 (410)
T 3v8s_A          163 YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPE  239 (410)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHH
Confidence            4688999999999999999999999   9999999999999999999999999999876544333334556999999999


Q ss_pred             hhhcCC----CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTP----ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~----~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++....    ++.++|+|||||++|+|++|+.||...
T Consensus       240 ~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  276 (410)
T 3v8s_A          240 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  276 (410)
T ss_dssp             HHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence            998665    788999999999999999999999754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=1.6e-26  Score=193.43  Aligned_cols=111  Identities=26%  Similarity=0.368  Sum_probs=94.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC----------------
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ----------------   96 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~----------------   96 (208)
                      ...++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......                
T Consensus       103 ~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~  179 (388)
T 3oz6_A          103 ANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTEN  179 (388)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC-----
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccc
Confidence            35788999999999999999999999   99999999999999999999999999998753211                


Q ss_pred             ----CceeeeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           97 ----TRTFTLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        97 ----~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          ........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||...
T Consensus       180 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          180 FDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             ----------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence                111233468999999999876 67899999999999999999999999754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.94  E-value=5.8e-26  Score=184.91  Aligned_cols=111  Identities=20%  Similarity=0.254  Sum_probs=95.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......+|+.|+||
T Consensus       113 ~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~t~~y~aP  188 (311)
T 3niz_A          113 KTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR-SYTHEVVTLWYRAP  188 (311)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC----CCCCCCTTCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCcc-cccCCcccCCcCCH
Confidence            35688999999999999999999999   999999999999999999999999999987643222 22334589999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      |.+.+ ..++.++||||+||++|+|++|+.||....
T Consensus       189 E~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  224 (311)
T 3niz_A          189 DVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVT  224 (311)
T ss_dssp             HHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             HHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCC
Confidence            99876 568999999999999999999999997653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.94  E-value=9e-26  Score=183.18  Aligned_cols=122  Identities=26%  Similarity=0.377  Sum_probs=100.0

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+... ....+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..........
T Consensus        91 ~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  166 (310)
T 3s95_A           91 GGTLRGIIKS-MDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPE  166 (310)
T ss_dssp             TCBHHHHHHH-CCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC-------
T ss_pred             CCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccccccc
Confidence            3344444433 345689999999999999999999999   999999999999999999999999999987643322110


Q ss_pred             -------------eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 -------------TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 -------------~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                                   ....||+.|+|||.+.+..++.++||||||+++|+|++|..|+...
T Consensus       167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~  225 (310)
T 3s95_A          167 GLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDY  225 (310)
T ss_dssp             -------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred             ccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcch
Confidence                         1345899999999999999999999999999999999999998754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.94  E-value=8e-27  Score=188.12  Aligned_cols=112  Identities=26%  Similarity=0.318  Sum_probs=94.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce---e
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLH--------NECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT---F  100 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH--------~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~  100 (208)
                      ....+++..+++++.|++.||+|||        +.   +|+||||||+||+++.++.+||+|||+++.........   .
T Consensus        98 ~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  174 (301)
T 3q4u_A           98 QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGN  174 (301)
T ss_dssp             TTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCC
T ss_pred             hhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccc
Confidence            4457999999999999999999999        76   99999999999999999999999999998764433321   1


Q ss_pred             eeeecCCCcCchhhhhcC------CCCccccchhHHHHHHHHHhc----------CcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNT------PISMKANVFNYGVVLLEIVCC----------RRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~------~~~~~~Di~s~Gv~l~el~tg----------~~p~~~~  146 (208)
                      ....||+.|+|||.+.+.      .++.++||||||+++|+|++|          +.||...
T Consensus       175 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~  236 (301)
T 3q4u_A          175 NPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV  236 (301)
T ss_dssp             CCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             cccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence            223589999999999776      345789999999999999999          7777544

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=190.70  Aligned_cols=121  Identities=28%  Similarity=0.351  Sum_probs=101.6

Q ss_pred             eCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC
Q 042116           18 KGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ...+..+.....  ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus       111 ~~~g~~l~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~  185 (335)
T 3dls_A          111 HGSGLDLFAFID--RHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKL  185 (335)
T ss_dssp             CTTSCBHHHHHH--TCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             CCCCccHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccceECCCCCc
Confidence            334435544443  345689999999999999999999999   999999999999999999999999999987654332


Q ss_pred             ceeeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                        .....||+.|+|||.+.+..+ +.++||||||+++|+|++|+.||..
T Consensus       186 --~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  232 (335)
T 3dls_A          186 --FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE  232 (335)
T ss_dssp             --BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred             --eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhh
Confidence              234558999999999988776 7889999999999999999999964

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.93  E-value=2.9e-26  Score=187.61  Aligned_cols=107  Identities=26%  Similarity=0.389  Sum_probs=95.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....    .....||+.|+||
T Consensus       100 ~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~----~~~~~gt~~y~aP  172 (318)
T 1fot_A          100 SQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV----TYTLCGTPDYIAP  172 (318)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC----BCCCCSCTTTCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCCc----cccccCCccccCH
Confidence            35688999999999999999999998   9999999999999999999999999999875332    2234589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++|+||+||++|+|++|+.||...
T Consensus       173 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  206 (318)
T 1fot_A          173 EVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  206 (318)
T ss_dssp             HHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             hHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            9999988999999999999999999999999754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=1.8e-26  Score=185.80  Aligned_cols=121  Identities=21%  Similarity=0.297  Sum_probs=97.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC---c
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT---R   98 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~---~   98 (208)
                      +++...... ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.......   .
T Consensus       108 ~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  183 (298)
T 3pls_A          108 GDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQ  183 (298)
T ss_dssp             CBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSC
T ss_pred             CCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccc
Confidence            344444432 346788999999999999999999999   999999999999999999999999999975533211   1


Q ss_pred             eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......++..|+|||.+.+..++.++|+||||+++|+|++|..|+...
T Consensus       184 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~  231 (298)
T 3pls_A          184 QHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH  231 (298)
T ss_dssp             CSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred             cCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc
Confidence            112234688999999999989999999999999999999976665433

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.93  E-value=7.5e-27  Score=197.39  Aligned_cols=119  Identities=18%  Similarity=0.204  Sum_probs=97.5

Q ss_pred             CCCcchHHHHh-----hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           20 KRKQFGAVVRR-----RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        20 ~~~~~~~l~~~-----~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      ..+++..+...     .....+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       187 ~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~  263 (413)
T 3dzo_A          187 MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA  263 (413)
T ss_dssp             CSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCGGGCEETTE
T ss_pred             hcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcccceEEEecCCeEEEEeccceeecCC
Confidence            34455555542     2345677888899999999999999999   999999999999999999999999999876532


Q ss_pred             CCCceeeeeecCCCcCchhhh----------hcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWS----------KNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~----------~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .    .....| +.|+|||++          ....++.++|||||||++|+|++|+.||...
T Consensus       264 ~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~  320 (413)
T 3dzo_A          264 S----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDD  320 (413)
T ss_dssp             E----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTT
T ss_pred             c----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            2    233457 999999998          4445788999999999999999999999754

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.93  E-value=1.7e-26  Score=192.22  Aligned_cols=117  Identities=9%  Similarity=0.065  Sum_probs=95.3

Q ss_pred             CcchHHHHhhhccCCCHHHH------HHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           22 KQFGAVVRRRENKEKESNLG------LLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~------~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +++..+..... ..++...+      ..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       172 ~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~  247 (371)
T 3q60_A          172 VDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR  247 (371)
T ss_dssp             EEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE
T ss_pred             CCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCccCcCCHHHEEECCCCCEEEEecceeeecCCC
Confidence            45555554432 23355555      67889999999999999   9999999999999999999999999999875321


Q ss_pred             CCceeeeeecCCCcCchhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          .....+|+.|+|||++.+  ..++.++|||||||++|+|++|+.||...
T Consensus       248 ----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  296 (371)
T 3q60_A          248 ----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLV  296 (371)
T ss_dssp             ----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBC
T ss_pred             ----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCc
Confidence                113346799999999987  67899999999999999999999999865

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.93  E-value=2e-26  Score=192.47  Aligned_cols=124  Identities=25%  Similarity=0.301  Sum_probs=102.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.++..+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       119 E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~  192 (373)
T 2r5t_A          119 DYINGGELFYHLQR---ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH  192 (373)
T ss_dssp             ECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred             eCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence            44445555444433   34678888899999999999999999   9999999999999999999999999999753222


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .....+||+.|+|||++.+..++.++|+|||||++|||++|+.||...
T Consensus       193 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  242 (373)
T 2r5t_A          193 NS-TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  242 (373)
T ss_dssp             CC-CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CC-ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            21 223456899999999999989999999999999999999999999744

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.93  E-value=6e-27  Score=191.51  Aligned_cols=113  Identities=27%  Similarity=0.329  Sum_probs=94.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC-------CCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeec
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNEC-------EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRG  105 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~-------~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g  105 (208)
                      ..+++..++.++.|++.||.|||+.+       .++|+||||||+||+++.++.+||+|||+++........ ......|
T Consensus       116 ~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~g  195 (322)
T 3soc_A          116 NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVG  195 (322)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCcc
Confidence            45899999999999999999999852       338999999999999999999999999999876543322 1223458


Q ss_pred             CCCcCchhhhhcC-----CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          106 TRGYMAPEWSKNT-----PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       106 ~~~y~aPE~~~~~-----~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+.|+|||++.+.     .++.++|||||||++|+|++|+.||...
T Consensus       196 t~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  241 (322)
T 3soc_A          196 TRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGP  241 (322)
T ss_dssp             CGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSC
T ss_pred             CccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCC
Confidence            9999999998763     3567889999999999999999999765

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.93  E-value=2.8e-26  Score=192.33  Aligned_cols=119  Identities=31%  Similarity=0.445  Sum_probs=99.8

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+.....  ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus       100 g~L~~~l~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~  172 (384)
T 4fr4_A          100 GDLRYHLQ--QNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ--IT  172 (384)
T ss_dssp             EEHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC--BC
T ss_pred             CcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCCCc--ee
Confidence            34444443  245689999999999999999999999   999999999999999999999999999987643322  33


Q ss_pred             eeecCCCcCchhhhhc---CCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          102 LIRGTRGYMAPEWSKN---TPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~---~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ...||+.|+|||++..   ..++.++|+|||||++|+|++|+.||....
T Consensus       173 ~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~  221 (384)
T 4fr4_A          173 TMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRS  221 (384)
T ss_dssp             CCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCT
T ss_pred             ccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCC
Confidence            4569999999999863   457899999999999999999999997553

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.9e-26  Score=186.28  Aligned_cols=128  Identities=26%  Similarity=0.341  Sum_probs=97.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc-EEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT-AKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-~kl~dfg~~~~~~   93 (208)
                      .+|+.++.+...+........++...++.++.|+++||.|||+....+|+||||||+||+++.++. +||+|||++....
T Consensus        78 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~  157 (307)
T 2eva_A           78 MEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQ  157 (307)
T ss_dssp             EECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----
T ss_pred             EEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccc
Confidence            344544444444433333456788999999999999999999943239999999999999988876 7999999987543


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..    .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       158 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  206 (307)
T 2eva_A          158 TH----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI  206 (307)
T ss_dssp             -----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTT
T ss_pred             cc----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhh
Confidence            22    12234899999999999888999999999999999999999999754

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.93  E-value=2.1e-26  Score=188.75  Aligned_cols=110  Identities=24%  Similarity=0.350  Sum_probs=78.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC---cEEEEecCCceecCCCCCceeeeeecCCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAKLLMPDQTRTFTLIRGTRGY  109 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y  109 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++   .+||+|||+++....... ......||+.|
T Consensus       100 ~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~t~~y  175 (325)
T 3kn6_A          100 KKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ-PLKTPCFTLHY  175 (325)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC-cccccCCCcCc
Confidence            35789999999999999999999999   999999999999997665   799999999987543322 22334579999


Q ss_pred             CchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +|||.+.+..++.++||||+|+++|+|++|+.||...
T Consensus       176 ~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  212 (325)
T 3kn6_A          176 AAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSH  212 (325)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             cCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            9999999989999999999999999999999999754

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.93  E-value=3.2e-26  Score=187.51  Aligned_cols=111  Identities=31%  Similarity=0.400  Sum_probs=95.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~a  111 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... .......||+.|+|
T Consensus        99 ~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~a  175 (323)
T 3tki_A           99 DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA  175 (323)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccC
Confidence            34689999999999999999999998   999999999999999999999999999986532222 12234468999999


Q ss_pred             hhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||++.+..+ +.++||||||+++|+|++|+.||...
T Consensus       176 PE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  211 (323)
T 3tki_A          176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  211 (323)
T ss_dssp             HHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS
T ss_pred             cHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence            999987765 77899999999999999999999765

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.93  E-value=1.7e-25  Score=181.09  Aligned_cols=127  Identities=31%  Similarity=0.384  Sum_probs=102.9

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ++..++.+...+........+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       110 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~  186 (307)
T 2nru_A          110 VYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKF  186 (307)
T ss_dssp             ECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSC
T ss_pred             EecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcCCCcEEEeecccccccccc
Confidence            3344444444444444556799999999999999999999999   9999999999999999999999999999876433


Q ss_pred             CCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......|++.|+|||.+.+ .++.++|+||||+++|+|++|+.||...
T Consensus       187 ~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~  237 (307)
T 2nru_A          187 AQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEH  237 (307)
T ss_dssp             SSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTT
T ss_pred             cccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccC
Confidence            222 1223458999999998865 4789999999999999999999999754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.93  E-value=9.7e-27  Score=186.44  Aligned_cols=120  Identities=18%  Similarity=0.262  Sum_probs=89.4

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      ++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++............
T Consensus       101 ~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  176 (281)
T 1mp8_A          101 ELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASK  176 (281)
T ss_dssp             EHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-----------------
T ss_pred             CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccCccccccccc
Confidence            44444432 234689999999999999999999999   99999999999999999999999999998764433222233


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..+++.|+|||.+....++.++|+||||+++|+|++ |..||...
T Consensus       177 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~  221 (281)
T 1mp8_A          177 GKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV  221 (281)
T ss_dssp             --CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcC
Confidence            346788999999998889999999999999999996 99999754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.93  E-value=3.1e-26  Score=196.39  Aligned_cols=108  Identities=28%  Similarity=0.268  Sum_probs=91.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......  ......||+.|+|||
T Consensus       159 ~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE  233 (464)
T 3ttj_A          159 MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPE  233 (464)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC-----CC--CC----CCCTTCCHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCc--ccCCCcccccccCHH
Confidence            3588999999999999999999999   99999999999999999999999999998754322  233456899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++||||+||++|+|++|+.||...
T Consensus       234 ~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~  266 (464)
T 3ttj_A          234 VILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  266 (464)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999999999999754

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=188.67  Aligned_cols=121  Identities=22%  Similarity=0.270  Sum_probs=97.9

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce--
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~--   99 (208)
                      +++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.........  
T Consensus       135 ~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  210 (325)
T 3kul_A          135 GSLDTFLRT-HDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYT  210 (325)
T ss_dssp             CBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEE
T ss_pred             CcHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccccCccceee
Confidence            344444432 345789999999999999999999999   99999999999999999999999999998765432221  


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....+|+.|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       211 ~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~  258 (325)
T 3kul_A          211 TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM  258 (325)
T ss_dssp             CC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             ccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            122335778999999998889999999999999999999 99999644

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.93  E-value=5.3e-26  Score=186.37  Aligned_cols=109  Identities=27%  Similarity=0.380  Sum_probs=96.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC----cEEEEecCCceecCCCCCceeeeeecCCC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW----TAKISDFGLAKLLMPDQTRTFTLIRGTRG  108 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~g~~~  108 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++    .+||+|||+++.......  .....||+.
T Consensus       108 ~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~gt~~  182 (326)
T 2y0a_A          108 KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE--FKNIFGTPE  182 (326)
T ss_dssp             SSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSC--CCCCCSCTT
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCc--cccccCCcC
Confidence            45689999999999999999999999   999999999999998877    799999999987643322  223458999


Q ss_pred             cCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.+..++.++|+||||+++|+|++|+.||...
T Consensus       183 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  220 (326)
T 2y0a_A          183 FVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  220 (326)
T ss_dssp             TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             cCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            99999999888999999999999999999999999654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=2.9e-26  Score=190.10  Aligned_cols=111  Identities=25%  Similarity=0.304  Sum_probs=94.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..............||+.|+|||
T Consensus       154 ~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE  230 (355)
T 1vzo_A          154 ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPD  230 (355)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChh
Confidence            4688999999999999999999999   9999999999999999999999999999876443333333456899999999


Q ss_pred             hhhc--CCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          114 WSKN--TPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       114 ~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ++.+  ..++.++|||||||++|+|++|+.||....
T Consensus       231 ~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~  266 (355)
T 1vzo_A          231 IVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG  266 (355)
T ss_dssp             HHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred             hhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC
Confidence            9975  346889999999999999999999997653

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.93  E-value=1.6e-26  Score=188.00  Aligned_cols=120  Identities=23%  Similarity=0.408  Sum_probs=94.3

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--e
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--T   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--~   99 (208)
                      +++..+...  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........  .
T Consensus       101 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~  175 (311)
T 3ork_A          101 VTLRDIVHT--EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ  175 (311)
T ss_dssp             EEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC------------
T ss_pred             CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCccccccccccccc
Confidence            445544433  34689999999999999999999999   9999999999999999999999999999765432221  1


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       176 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~  222 (311)
T 3ork_A          176 TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD  222 (311)
T ss_dssp             ------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            22345899999999999989999999999999999999999999754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.93  E-value=1.1e-26  Score=192.05  Aligned_cols=108  Identities=25%  Similarity=0.275  Sum_probs=94.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCchhh
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~aPE~  114 (208)
                      +++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... .......||+.|+|||+
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~  266 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  266 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhh
Confidence            88999999999999999999999   999999999999999999999999999986543322 22334457889999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      +.+..++.++||||||+++|+|++ |+.||...
T Consensus       267 ~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  299 (359)
T 3vhe_A          267 IFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  299 (359)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             hcCCCCCchhhhhhHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999998 99999755

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.93  E-value=2.7e-26  Score=194.41  Aligned_cols=110  Identities=27%  Similarity=0.299  Sum_probs=94.8

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-CcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ....+++..+..++.|++.||.|||+.   +|+||||||+|||++.+ +.+||+|||+++.......  .....+|+.|+
T Consensus       149 ~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~t~~y~  223 (420)
T 1j1b_A          149 AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP--NVSYICSRYYR  223 (420)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSCCSCTTSC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhcccCCC--ceeeeeCCCcC
Confidence            456789999999999999999999998   99999999999999965 5689999999987644322  22345899999


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||++.+. .++.++|||||||++|||++|+.||...
T Consensus       224 aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~  260 (420)
T 1j1b_A          224 APELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD  260 (420)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            99998764 6899999999999999999999999754

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.93  E-value=1.5e-25  Score=193.04  Aligned_cols=124  Identities=21%  Similarity=0.202  Sum_probs=104.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCceecCCCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ++.+.+++.. ....+++..++.++.||+.||.|||+.   +|+||||||+|||+   +.++.+||+|||+++.......
T Consensus        86 g~sL~~ll~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~  161 (483)
T 3sv0_A           86 GPSLEDLFNF-CSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTST  161 (483)
T ss_dssp             CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             CCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcc
Confidence            5566666653 245789999999999999999999999   99999999999999   5888999999999987654332


Q ss_pred             ce------eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           98 RT------FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        98 ~~------~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      ..      .....||..|+|||.+.+..++.++|||||||++|+|++|+.||.....
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~  218 (483)
T 3sv0_A          162 HQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA  218 (483)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             ccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccc
Confidence            11      1244589999999999999999999999999999999999999986533

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.93  E-value=2.8e-26  Score=192.77  Aligned_cols=110  Identities=25%  Similarity=0.316  Sum_probs=95.8

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ....++...+..++.|++.||.|||+.   +|+||||||+||+++ .++.+||+|||+++.......  .....+|+.|+
T Consensus       134 ~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~--~~~~~~t~~y~  208 (394)
T 4e7w_A          134 LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEP--NVSYICSRYYR  208 (394)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSSCSCGGGC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCC--CcccccCcCcc
Confidence            356789999999999999999999999   999999999999998 789999999999987644332  22345899999


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+. .++.++||||+||++|+|++|+.||...
T Consensus       209 aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  245 (394)
T 4e7w_A          209 APELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGE  245 (394)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99998654 5899999999999999999999999755

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.93  E-value=1.3e-25  Score=180.71  Aligned_cols=110  Identities=18%  Similarity=0.279  Sum_probs=95.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+||
T Consensus        95 ~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~t~~y~aP  170 (292)
T 3o0g_A           95 NGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR-CYSAEVVTLWYRPP  170 (292)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS-CCCSCCSCGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCccc-cccCCccccCCcCh
Confidence            46789999999999999999999999   999999999999999999999999999987643222 22334589999999


Q ss_pred             hhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+.. ++.++||||+||++|+|++|..|+...
T Consensus       171 E~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~  205 (292)
T 3o0g_A          171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  205 (292)
T ss_dssp             HHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC
T ss_pred             HHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCC
Confidence            9997765 799999999999999999999887544

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.93  E-value=3.2e-26  Score=190.46  Aligned_cols=122  Identities=24%  Similarity=0.350  Sum_probs=100.1

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC---CcEEEEecCCceecC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF---WTAKISDFGLAKLLM   93 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~dfg~~~~~~   93 (208)
                      |+.++.++..+.   ....++...+..++.|++.||.|||+.   +|+||||||+||+++.+   +.+||+|||++....
T Consensus       109 ~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~  182 (362)
T 2bdw_A          109 LVTGGELFEDIV---AREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN  182 (362)
T ss_dssp             CCCSCBHHHHHT---TCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred             cCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence            344444444443   235688999999999999999999999   99999999999999765   459999999998764


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  .....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       183 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  233 (362)
T 2bdw_A          183 DSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  233 (362)
T ss_dssp             TCCS--CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc--cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            3322  22345899999999999888999999999999999999999999644

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.4e-26  Score=192.22  Aligned_cols=110  Identities=25%  Similarity=0.244  Sum_probs=95.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... .......+|+.|+||
T Consensus       186 ~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  262 (382)
T 3tt0_A          186 EQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  262 (382)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCH
Confidence            4689999999999999999999999   999999999999999999999999999986543322 112223467889999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++||||||+++|+|++ |+.||...
T Consensus       263 E~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~  297 (382)
T 3tt0_A          263 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  297 (382)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             HHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999999 99998644

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.93  E-value=9.9e-26  Score=188.21  Aligned_cols=125  Identities=24%  Similarity=0.318  Sum_probs=102.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE--cCCCcEEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM--DEFWTAKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill--~~~~~~kl~dfg~~~~~   92 (208)
                      .||+.++.+...+..  ....+++..+..++.|++.||.|||+.   +|+||||||+||++  +.++.+||+|||+++..
T Consensus       165 ~E~~~~~~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~  239 (373)
T 2x4f_A          165 MEYVDGGELFDRIID--ESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRY  239 (373)
T ss_dssp             EECCTTCEEHHHHHH--TGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEEC
T ss_pred             EeCCCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceec
Confidence            344545555554443  335688999999999999999999999   99999999999999  56788999999999876


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  .....||+.|+|||++....++.++|||||||++|+|++|+.||...
T Consensus       240 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  291 (373)
T 2x4f_A          240 KPREK--LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD  291 (373)
T ss_dssp             CTTCB--CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCccc--cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            44332  22335899999999998888999999999999999999999999754

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=5.3e-26  Score=189.90  Aligned_cols=126  Identities=21%  Similarity=0.270  Sum_probs=91.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++. +..+.. .....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       171 e~~~~g~-L~~~l~-~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          171 PYMKHGD-LRNFIR-NETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  245 (373)
T ss_dssp             ECCTTCB-HHHHHH-CTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             ECCCCCC-HHHHHh-hcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccccc
Confidence            4444444 444443 2345678899999999999999999999   9999999999999999999999999999765332


Q ss_pred             CCc---eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTR---TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...   ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~  300 (373)
T 3c1x_A          246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  300 (373)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred             ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence            211   1122346788999999999999999999999999999999 66677544

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.93  E-value=1.3e-25  Score=183.63  Aligned_cols=119  Identities=23%  Similarity=0.305  Sum_probs=101.0

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+..   ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......... .
T Consensus       126 ~~~L~~~l~---~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~-~  198 (321)
T 2c30_A          126 GGALTDIVS---QVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-R  198 (321)
T ss_dssp             SCBHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-B
T ss_pred             CCCHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccc-c
Confidence            334444433   35789999999999999999999998   9999999999999999999999999999876443222 2


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||++.+..++.++|+||||+++|+|++|+.||...
T Consensus       199 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~  244 (321)
T 2c30_A          199 KSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD  244 (321)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            3345899999999999888999999999999999999999999744

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.93  E-value=2e-26  Score=188.97  Aligned_cols=125  Identities=22%  Similarity=0.234  Sum_probs=95.3

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ   96 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~   96 (208)
                      +..++.+...+..  ....++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus        97 ~~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~  171 (327)
T 3lzb_A           97 LMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             CCSSCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC--------
T ss_pred             ecCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEccCcc
Confidence            3344444444332  245688999999999999999999999   99999999999999999999999999998764332


Q ss_pred             Cc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           97 TR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        97 ~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .. ......++..|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~  223 (327)
T 3lzb_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  223 (327)
T ss_dssp             --------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            22 1223346778999999999999999999999999999999 99999754

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.93  E-value=3.5e-26  Score=185.43  Aligned_cols=110  Identities=24%  Similarity=0.245  Sum_probs=95.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........ ......+++.|+||
T Consensus       145 ~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  221 (314)
T 2ivs_A          145 RALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAI  221 (314)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccCh
Confidence            4588999999999999999999999   9999999999999999999999999999876443322 11223467889999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       222 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  256 (314)
T 2ivs_A          222 ESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  256 (314)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             hhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99998889999999999999999999 99999754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.93  E-value=2.9e-26  Score=189.71  Aligned_cols=109  Identities=24%  Similarity=0.375  Sum_probs=87.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceecCCCCCceeeeeecCCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGY  109 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y  109 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.   ++.+||+|||+++......  ......||+.|
T Consensus       142 ~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y  216 (349)
T 2w4o_A          142 KGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV--LMKTVCGTPGY  216 (349)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------------------CGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCccc--ccccccCCCCc
Confidence            35689999999999999999999999   9999999999999975   8899999999997653321  12334589999


Q ss_pred             CchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       217 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  253 (349)
T 2w4o_A          217 CAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDE  253 (349)
T ss_dssp             SCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCT
T ss_pred             cCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            9999999888999999999999999999999999754

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=182.61  Aligned_cols=116  Identities=23%  Similarity=0.302  Sum_probs=95.0

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+...... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........  ..
T Consensus       141 ~~L~~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~--~~  214 (311)
T 3p1a_A          141 PSLQQHCEA-WGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA--GE  214 (311)
T ss_dssp             CBHHHHHHH-HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC--------
T ss_pred             CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccCCC--Cc
Confidence            344443332 345699999999999999999999999   999999999999999999999999999987643222  23


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ...||+.|+|||++.+ .++.++|||||||++|+|++|..|+.
T Consensus       215 ~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~  256 (311)
T 3p1a_A          215 VQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPH  256 (311)
T ss_dssp             CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCS
T ss_pred             ccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            3458999999999876 68999999999999999999987764

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.93  E-value=3.1e-26  Score=188.87  Aligned_cols=118  Identities=25%  Similarity=0.433  Sum_probs=99.5

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      +.++..+..   ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........  .
T Consensus        93 g~l~~~l~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~--~  164 (336)
T 3h4j_B           93 GELFDYIVE---KKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF--L  164 (336)
T ss_dssp             EEHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT--T
T ss_pred             CcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc--c
Confidence            344444443   35689999999999999999999999   999999999999999999999999999976543322  2


Q ss_pred             eeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||.+.+..+ +.++||||+|+++|+|++|+.||...
T Consensus       165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE  211 (336)
T ss_dssp             CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred             ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCc
Confidence            33458999999999987766 68999999999999999999999754

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=2.7e-26  Score=188.67  Aligned_cols=109  Identities=25%  Similarity=0.259  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE  113 (208)
                      .+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......... ......+|+.|+|||
T Consensus       168 ~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE  244 (344)
T 1rjb_A          168 VLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPE  244 (344)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHH
Confidence            478999999999999999999999   9999999999999999999999999999765433322 222344788999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++||||||+++|+|+| |+.||...
T Consensus       245 ~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  278 (344)
T 1rjb_A          245 SLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  278 (344)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             HhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence            9998899999999999999999998 99999765

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.93  E-value=3.4e-26  Score=194.96  Aligned_cols=124  Identities=26%  Similarity=0.349  Sum_probs=100.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      +|+.++.+...+..   ...+++..+..++.|++.||+|||+ .   +|+||||||+|||++.++.+||+|||+++....
T Consensus       228 e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  301 (446)
T 4ejn_A          228 EYANGGELFFHLSR---ERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  301 (446)
T ss_dssp             CCCSSCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred             eeCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence            34444444444332   3568999999999999999999998 7   999999999999999999999999999875432


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       302 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  352 (446)
T 4ejn_A          302 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  352 (446)
T ss_dssp             ------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCc-ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            222 223456899999999999999999999999999999999999999754

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.93  E-value=4e-26  Score=184.95  Aligned_cols=109  Identities=25%  Similarity=0.276  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aPE  113 (208)
                      .+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......... .....+++.|+|||
T Consensus       141 ~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  217 (313)
T 1t46_A          141 ALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPE  217 (313)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChH
Confidence            589999999999999999999999   99999999999999999999999999998765433321 22334678899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++||||||+++|+|++ |+.||...
T Consensus       218 ~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  251 (313)
T 1t46_A          218 SIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM  251 (313)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence            9998899999999999999999999 99999755

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.93  E-value=3.6e-26  Score=181.65  Aligned_cols=126  Identities=21%  Similarity=0.279  Sum_probs=102.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +++.++ ++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++......
T Consensus        83 e~~~~~-~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  157 (268)
T 3sxs_A           83 EYISNG-CLLNYLRS-HGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD  157 (268)
T ss_dssp             ECCTTC-BHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTT
T ss_pred             EccCCC-cHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchh
Confidence            333344 34444432 345689999999999999999999999   9999999999999999999999999999876544


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........+++.|+|||.+.+..++.++|+||+|+++|+|++ |+.||...
T Consensus       158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  209 (268)
T 3sxs_A          158 QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY  209 (268)
T ss_dssp             CEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             hhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc
Confidence            3333333345678999999998889999999999999999999 99998644

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.93  E-value=2.2e-25  Score=190.31  Aligned_cols=123  Identities=27%  Similarity=0.309  Sum_probs=100.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++ ++...........++...++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       267 e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  342 (450)
T 1k9a_A          267 EYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  342 (450)
T ss_dssp             ECCTTC-BHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EecCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence            333344 444444444445578999999999999999999999   9999999999999999999999999999864322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .    ....++..|+|||.+.+..++.++||||||+++|||++ |+.||...
T Consensus       343 ~----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~  390 (450)
T 1k9a_A          343 Q----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  390 (450)
T ss_dssp             --------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTS
T ss_pred             c----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            1    12246889999999999999999999999999999998 99999754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=188.70  Aligned_cols=113  Identities=25%  Similarity=0.294  Sum_probs=92.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-------cee
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNEC------EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-------RTF  100 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~------~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-------~~~  100 (208)
                      ...++..+.+++.|++.||.|||+.+      .++|+||||||+||+++.++.+||+|||+++.......       ...
T Consensus       106 ~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~  185 (336)
T 3g2f_A          106 HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAA  185 (336)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCcccccccc
Confidence            34588889999999999999999863      33899999999999999999999999999987643221       111


Q ss_pred             eeeecCCCcCchhhhhc-------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||++.+       ..++.++|||||||++|+|++|..|+...
T Consensus       186 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  238 (336)
T 3g2f_A          186 ISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPG  238 (336)
T ss_dssp             CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTT
T ss_pred             ccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCc
Confidence            23358999999999876       34567899999999999999998877654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.93  E-value=6e-25  Score=183.40  Aligned_cols=120  Identities=24%  Similarity=0.263  Sum_probs=100.4

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC---------------------
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW---------------------   79 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---------------------   79 (208)
                      +.++..+. ......++...++.++.|++.||.|||+++  +|+||||||+|||++.++                     
T Consensus       129 ~~l~~~~~-~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~  205 (397)
T 1wak_A          129 HHLLKWII-KSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPP  205 (397)
T ss_dssp             CBHHHHHH-HTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHHHC----------
T ss_pred             ccHHHHHH-hcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCC
Confidence            33444443 444567999999999999999999999864  899999999999998775                     


Q ss_pred             ----------------------------cEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHH
Q 042116           80 ----------------------------TAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGV  131 (208)
Q Consensus        80 ----------------------------~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv  131 (208)
                                                  .+||+|||++......    .....||+.|+|||++.+..++.++|||||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  281 (397)
T 1wak_A          206 SGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVLIGSGYNTPADIWSTAC  281 (397)
T ss_dssp             -----------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHH
T ss_pred             CCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhhcCCCCCcHHHHHHHHH
Confidence                                        7999999999876432    22335899999999999988999999999999


Q ss_pred             HHHHHHhcCcCCCCCC
Q 042116          132 VLLEIVCCRRNMEIDP  147 (208)
Q Consensus       132 ~l~el~tg~~p~~~~~  147 (208)
                      ++|+|++|+.||....
T Consensus       282 il~elltg~~pf~~~~  297 (397)
T 1wak_A          282 MAFELATGDYLFEPHS  297 (397)
T ss_dssp             HHHHHHHSSCSCCCCC
T ss_pred             HHHHHhhCCCCCCCCc
Confidence            9999999999997653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.93  E-value=5.7e-26  Score=185.51  Aligned_cols=119  Identities=21%  Similarity=0.198  Sum_probs=101.5

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-------------------CCcE
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-------------------FWTA   81 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-------------------~~~~   81 (208)
                      ++.+...........++...+..++.|++.||+|||+.   +|+||||||+||+++.                   ++.+
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (339)
T 1z57_A          100 GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDI  176 (339)
T ss_dssp             CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCE
T ss_pred             CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccccccccCCCc
Confidence            44555555555556788999999999999999999999   9999999999999987                   6679


Q ss_pred             EEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           82 KISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        82 kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||+|||+++......    ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       177 kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  237 (339)
T 1z57_A          177 KVVDFGSATYDDEHH----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH  237 (339)
T ss_dssp             EECCCSSCEETTSCC----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             eEeeCcccccCcccc----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            999999998753322    2335899999999999888999999999999999999999999754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.93  E-value=2.7e-25  Score=184.34  Aligned_cols=121  Identities=26%  Similarity=0.328  Sum_probs=100.8

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc------CCCcEEEEecCCceecC
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD------EFWTAKISDFGLAKLLM   93 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~------~~~~~kl~dfg~~~~~~   93 (208)
                      .++.+..+........++...+..++.|++.||+|||+.+  +|+||||||+||+++      ..+.+||+|||+++...
T Consensus       112 ~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~  189 (373)
T 1q8y_A          112 LGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  189 (373)
T ss_dssp             CCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             CCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcCcceEEEcccccccccC
Confidence            3556667776666677999999999999999999999853  899999999999994      44579999999998764


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...    ....||+.|+|||++.+..++.++||||||+++|+|++|+.||...
T Consensus       190 ~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  238 (373)
T 1q8y_A          190 EHY----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD  238 (373)
T ss_dssp             BCC----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             CCC----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            322    2235899999999999989999999999999999999999999755

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.7e-26  Score=194.08  Aligned_cols=119  Identities=21%  Similarity=0.284  Sum_probs=97.4

Q ss_pred             cchHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE----cCCCcEEEEecCCceecCCCCC
Q 042116           23 QFGAVVRR-RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        23 ~~~~l~~~-~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ++..+... .....+++..++.++.|++.||.|||+.   +|+||||||+||++    +.++.+||+|||+++.......
T Consensus        95 ~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~  171 (396)
T 4eut_A           95 SLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ  171 (396)
T ss_dssp             EHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGG
T ss_pred             CHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCc
Confidence            44444433 3334489999999999999999999999   99999999999999    7778899999999987643322


Q ss_pred             ceeeeeecCCCcCchhhhhc--------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKN--------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~--------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        .....||+.|+|||++..        ..++.++|||||||++|+|++|+.||...
T Consensus       172 --~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~  226 (396)
T 4eut_A          172 --FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF  226 (396)
T ss_dssp             --SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECT
T ss_pred             --cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence              223458999999998864        45678999999999999999999999754

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.93  E-value=2.9e-25  Score=181.12  Aligned_cols=109  Identities=25%  Similarity=0.321  Sum_probs=94.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......+|+.|+|||
T Consensus       103 ~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~t~~y~aPE  178 (317)
T 2pmi_A          103 RGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN-TFSSEVVTLWYRAPD  178 (317)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCC-CCCCCCSCCTTCCHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecCCCcc-cCCCCcccccccCch
Confidence            4588999999999999999999999   999999999999999999999999999987643222 122345899999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|||||||++|+|++|+.||...
T Consensus       179 ~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  212 (317)
T 2pmi_A          179 VLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT  212 (317)
T ss_dssp             HHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9876 46899999999999999999999999754

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.2e-26  Score=187.03  Aligned_cols=122  Identities=21%  Similarity=0.252  Sum_probs=86.2

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP--IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      .+...+........+++..++.++.|++.||.|||+.   +  |+||||||+||+++.++.+||+|||+++.........
T Consensus       119 ~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  195 (337)
T 3ll6_A          119 QLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYS  195 (337)
T ss_dssp             EHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC---
T ss_pred             CHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCccceeccccCccc
Confidence            3334444444566799999999999999999999998   7  9999999999999999999999999998754322211


Q ss_pred             -----------eeeeecCCCcCchhhh---hcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 -----------FTLIRGTRGYMAPEWS---KNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 -----------~~~~~g~~~y~aPE~~---~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                                 .....||+.|+|||.+   .+..++.++||||||+++|+|++|+.||...
T Consensus       196 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  256 (337)
T 3ll6_A          196 WSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDG  256 (337)
T ss_dssp             ----------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcch
Confidence                       1133488999999998   5667889999999999999999999999754

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.93  E-value=1.5e-25  Score=188.10  Aligned_cols=109  Identities=24%  Similarity=0.357  Sum_probs=95.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC--CCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE--FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.  ++.+||+|||+++.......  .....||+.|+
T Consensus       143 ~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~--~~~~~gt~~y~  217 (387)
T 1kob_A          143 DYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI--VKVTTATAEFA  217 (387)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC--EEEECSSGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCCcc--eeeeccCCCcc
Confidence            34689999999999999999999999   9999999999999974  46799999999987654332  33446899999


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||++.+..++.++|||||||++|+|++|+.||...
T Consensus       218 aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  253 (387)
T 1kob_A          218 APEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  253 (387)
T ss_dssp             CHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence            999999888999999999999999999999999754

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.93  E-value=2.5e-26  Score=183.59  Aligned_cols=123  Identities=22%  Similarity=0.297  Sum_probs=101.8

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+........+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...........
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  167 (279)
T 1qpc_A           91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR  167 (279)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECC
T ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccc
Confidence            34555555444445789999999999999999999999   999999999999999999999999999987644332222


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  214 (279)
T 1qpc_A          168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM  214 (279)
T ss_dssp             TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             cCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc
Confidence            22336778999999988888999999999999999999 89998644

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.93  E-value=7.6e-26  Score=183.74  Aligned_cols=128  Identities=17%  Similarity=0.175  Sum_probs=96.9

Q ss_pred             EEeCCCCcchHHHHh---hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRR---RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      +|..++.+...+...   .....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       121 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~  197 (313)
T 3brb_A          121 PFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLSKKI  197 (313)
T ss_dssp             ECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEECSCSCC---
T ss_pred             ecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEEeecCcceec
Confidence            344444444444332   2345689999999999999999999998   9999999999999999999999999999765


Q ss_pred             CCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           93 MPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        93 ~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...... ......+++.|+|||.+.+..++.++|+||||+++|+|++ |..||...
T Consensus       198 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  253 (313)
T 3brb_A          198 YSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV  253 (313)
T ss_dssp             -------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC
Confidence            433221 1223346788999999999899999999999999999999 88888654

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=1.8e-25  Score=182.90  Aligned_cols=107  Identities=28%  Similarity=0.369  Sum_probs=87.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce---eeeeec
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNEC-----EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT---FTLIRG  105 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~---~~~~~g  105 (208)
                      ..+++..++.++.|++.||.|||+.+     .++|+||||||+||+++.++.+||+|||+++.........   .....|
T Consensus       129 ~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g  208 (337)
T 3mdy_A          129 TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVG  208 (337)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCcc
Confidence            46899999999999999999999752     3489999999999999999999999999997764333221   123458


Q ss_pred             CCCcCchhhhhcCCCCcc------ccchhHHHHHHHHHhcC
Q 042116          106 TRGYMAPEWSKNTPISMK------ANVFNYGVVLLEIVCCR  140 (208)
Q Consensus       106 ~~~y~aPE~~~~~~~~~~------~Di~s~Gv~l~el~tg~  140 (208)
                      |+.|+|||.+.+...+..      +|||||||++|+|++|.
T Consensus       209 t~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~  249 (337)
T 3mdy_A          209 TKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRC  249 (337)
T ss_dssp             CGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CcceeChhhcccccCCccccCccccchHHHHHHHHHHHhcc
Confidence            999999999987766554      99999999999999993

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.93  E-value=9.9e-26  Score=187.35  Aligned_cols=125  Identities=24%  Similarity=0.252  Sum_probs=91.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc--EEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT--AKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--~kl~dfg~~~~~   92 (208)
                      .+|+.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.  +||+|||+++..
T Consensus        95 ~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~  168 (361)
T 3uc3_A           95 MEYASGGELYERICN---AGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSS  168 (361)
T ss_dssp             EECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC---
T ss_pred             EEeCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccc
Confidence            344444444444332   34689999999999999999999999   9999999999999987765  999999998743


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCcc-ccchhHHHHHHHHHhcCcCCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMK-ANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~-~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ....  ......||+.|+|||++.+..++.+ +||||+||++|+|++|+.||....
T Consensus       169 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~  222 (361)
T 3uc3_A          169 VLHS--QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE  222 (361)
T ss_dssp             --------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC---
T ss_pred             cccC--CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc
Confidence            2221  1233458999999999988777655 899999999999999999997653

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.93  E-value=2.4e-26  Score=184.92  Aligned_cols=112  Identities=29%  Similarity=0.411  Sum_probs=85.9

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC-CceeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-TRTFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~g~~~y~  110 (208)
                      ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++....... ........||+.|+
T Consensus       113 ~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~  189 (289)
T 3og7_A          113 SETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWM  189 (289)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCcccc
Confidence            346689999999999999999999999   99999999999999999999999999987653321 12223345899999


Q ss_pred             chhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.   ...++.++||||||+++|+|++|+.||...
T Consensus       190 aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  228 (289)
T 3og7_A          190 APEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI  228 (289)
T ss_dssp             CHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             CchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc
Confidence            999986   566788999999999999999999999754

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.93  E-value=5.4e-25  Score=180.96  Aligned_cols=118  Identities=21%  Similarity=0.283  Sum_probs=99.8

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE-------------------cCCCcE
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM-------------------DEFWTA   81 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-------------------~~~~~~   81 (208)
                      +.++. .........+++..++.++.|++.||.|||+.   +|+||||||+||++                   +.++.+
T Consensus       106 ~~l~~-~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~  181 (355)
T 2eu9_A          106 KNTFE-FLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSI  181 (355)
T ss_dssp             CBHHH-HHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCE
T ss_pred             CChHH-HHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccccccccCCCcE
Confidence            33444 44444556789999999999999999999998   99999999999999                   567889


Q ss_pred             EEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           82 KISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        82 kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||+|||+++......    ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       182 kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (355)
T 2eu9_A          182 RVADFGSATFDHEHH----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH  242 (355)
T ss_dssp             EECCCTTCEETTSCC----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             EEeecCccccccccc----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            999999998753322    2335899999999999889999999999999999999999999754

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.93  E-value=5.5e-26  Score=181.94  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=97.4

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++..+... ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++............
T Consensus        97 ~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  172 (281)
T 3cc6_A           97 GELGHYLER-NKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKAS  172 (281)
T ss_dssp             CBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------
T ss_pred             CCHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccccccccccc
Confidence            344444433 345688999999999999999999999   9999999999999999999999999999765443322223


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~  218 (281)
T 3cc6_A          173 VTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL  218 (281)
T ss_dssp             CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             cCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC
Confidence            3446788999999998889999999999999999998 99999744

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.93  E-value=8.2e-26  Score=183.65  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=89.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCceecCCCCC------ceeeeee
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAKLLMPDQT------RTFTLIR  104 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~~~~~~~~------~~~~~~~  104 (208)
                      ..++...+..++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||++........      .......
T Consensus       106 ~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  182 (316)
T 2ac3_A          106 RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC  182 (316)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------C
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCcccccccccccccc
Confidence            5688999999999999999999999   9999999999999988766   99999999876532111      1112345


Q ss_pred             cCCCcCchhhhhc-----CCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          105 GTRGYMAPEWSKN-----TPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       105 g~~~y~aPE~~~~-----~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ||+.|+|||.+..     ..++.++|||||||++|+|++|+.||....
T Consensus       183 gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  230 (316)
T 2ac3_A          183 GSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRC  230 (316)
T ss_dssp             CSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCC
T ss_pred             CCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccc
Confidence            8999999999865     457889999999999999999999997653

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.93  E-value=1.7e-25  Score=195.73  Aligned_cols=122  Identities=26%  Similarity=0.320  Sum_probs=104.0

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+...........+++..++.++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.......  .
T Consensus       268 gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~--~  342 (576)
T 2acx_A          268 GGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--I  342 (576)
T ss_dssp             SCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC--E
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecccCcc--c
Confidence            34444444444455689999999999999999999999   999999999999999999999999999987644332  2


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                      ....||+.|+|||++.+..++.++|+|||||++|+|++|+.||....
T Consensus       343 ~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~  389 (576)
T 2acx_A          343 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK  389 (576)
T ss_dssp             ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSS
T ss_pred             cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence            33469999999999998889999999999999999999999998653

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.93  E-value=1.4e-25  Score=190.44  Aligned_cols=118  Identities=23%  Similarity=0.296  Sum_probs=102.3

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc--EEEEecCCceecCCCCCce
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT--AKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--~kl~dfg~~~~~~~~~~~~   99 (208)
                      +.+..+........+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.  +||+|||+++......   
T Consensus       183 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~---  256 (429)
T 3kvw_A          183 MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRV---  256 (429)
T ss_dssp             CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCC---
T ss_pred             CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccceecCCcc---
Confidence            4555666666666799999999999999999999999   9999999999999999887  9999999997653322   


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       257 -~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          257 -YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             -CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence             2345899999999999989999999999999999999999999755

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=2.2e-25  Score=185.69  Aligned_cols=116  Identities=25%  Similarity=0.357  Sum_probs=100.0

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      +.++..+...   ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....    .
T Consensus       113 ~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~----~  182 (367)
T 1cm8_A          113 GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQADSE----M  182 (367)
T ss_dssp             SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSS----C
T ss_pred             CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccccccc----c
Confidence            4556655543   5688999999999999999999999   9999999999999999999999999999875432    2


Q ss_pred             eeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....+|+.|+|||.+.+ ..++.++|+||+||++|+|++|+.||...
T Consensus       183 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  229 (367)
T 1cm8_A          183 TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  229 (367)
T ss_dssp             CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC
Confidence            23458999999999876 67899999999999999999999999754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.93  E-value=4.2e-25  Score=178.27  Aligned_cols=111  Identities=28%  Similarity=0.330  Sum_probs=95.3

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+|
T Consensus       130 ~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~a  205 (298)
T 2zv2_A          130 TLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA-LLSNTVGTPAFMA  205 (298)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSC-EECCCCSCGGGCC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCCEEEecCCCccccccccc-cccCCcCCccccC
Confidence            345789999999999999999999999   999999999999999999999999999987644322 2233458999999


Q ss_pred             hhhhhcCC---CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTP---ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~---~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+..   ++.++||||||+++|+|++|+.||...
T Consensus       206 PE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  243 (298)
T 2zv2_A          206 PESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE  243 (298)
T ss_dssp             GGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence            99987654   377899999999999999999999643

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=184.76  Aligned_cols=120  Identities=25%  Similarity=0.331  Sum_probs=93.2

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-e
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-T   99 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~   99 (208)
                      ++.+......  ...+++..+..++.|++.||.|||+.   +|+||||||+|||++ ++.+||+|||+++........ .
T Consensus        92 ~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~  165 (343)
T 3dbq_A           92 NIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVV  165 (343)
T ss_dssp             SEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--------
T ss_pred             CCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCccccccc
Confidence            3344444433  45788999999999999999999999   999999999999997 578999999999876433222 2


Q ss_pred             eeeeecCCCcCchhhhhc-----------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKN-----------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~-----------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....||+.|+|||++.+           ..++.++|||||||++|+|++|+.||...
T Consensus       166 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  223 (343)
T 3dbq_A          166 KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  223 (343)
T ss_dssp             ----CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             CCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence            234568999999999865           66889999999999999999999999643

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.93  E-value=1.1e-25  Score=188.94  Aligned_cols=121  Identities=24%  Similarity=0.320  Sum_probs=94.6

Q ss_pred             CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-
Q 042116           20 KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-   98 (208)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-   98 (208)
                      .++.+..+...  ...+++..+..++.|++.||.|||+.   +|+||||||+|||++ ++.+||+|||+++........ 
T Consensus       138 ~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~  211 (390)
T 2zmd_A          138 GNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSV  211 (390)
T ss_dssp             CSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC-------
T ss_pred             CCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccc
Confidence            33445555543  34778888999999999999999998   999999999999995 578999999999876433221 


Q ss_pred             eeeeeecCCCcCchhhhhc-----------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 TFTLIRGTRGYMAPEWSKN-----------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ~~~~~~g~~~y~aPE~~~~-----------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......||+.|+|||++.+           ..++.++|||||||++|+|++|+.||...
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  270 (390)
T 2zmd_A          212 VKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  270 (390)
T ss_dssp             --CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhh
Confidence            1233458999999999865           35889999999999999999999999643

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.93  E-value=1.4e-25  Score=187.68  Aligned_cols=123  Identities=11%  Similarity=0.076  Sum_probs=101.2

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--   98 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--   98 (208)
                      ++++..+........++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||.+.........  
T Consensus       110 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~  186 (389)
T 3gni_B          110 YGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQR  186 (389)
T ss_dssp             TCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECS
T ss_pred             CCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeecccccccc
Confidence            44555566555556799999999999999999999999   9999999999999999999999999988654221110  


Q ss_pred             ----eeeeeecCCCcCchhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 ----TFTLIRGTRGYMAPEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ----~~~~~~g~~~y~aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          ......||..|+|||.+.+  ..++.++|||||||++|+|++|+.||...
T Consensus       187 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  240 (389)
T 3gni_B          187 VVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  240 (389)
T ss_dssp             CBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence                1112357889999999987  57899999999999999999999999765

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.92  E-value=8.6e-26  Score=186.53  Aligned_cols=123  Identities=20%  Similarity=0.305  Sum_probs=98.9

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC----CcEEEEecCCceec
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF----WTAKISDFGLAKLL   92 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~----~~~kl~dfg~~~~~   92 (208)
                      |+.++.++..+.   ....+++..+..++.|++.||.|||+.   +|+||||||+||++..+    +.+||+|||+++..
T Consensus        97 ~~~gg~L~~~i~---~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~  170 (342)
T 2qr7_A           97 LMKGGELLDKIL---RQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL  170 (342)
T ss_dssp             CCCSCBHHHHHH---TCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred             CCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence            333444444443   235689999999999999999999999   99999999999998433    35999999999876


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... ......||+.|+|||++.+..++.++|+|||||++|+|++|+.||...
T Consensus       171 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  223 (342)
T 2qr7_A          171 RAENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANG  223 (342)
T ss_dssp             BCTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             cCCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence            43322 223345899999999998877899999999999999999999999754

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.92  E-value=2.3e-26  Score=183.07  Aligned_cols=120  Identities=23%  Similarity=0.299  Sum_probs=98.5

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      ++..+... ....++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++............
T Consensus        91 ~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  166 (269)
T 4hcu_A           91 CLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTG  166 (269)
T ss_dssp             BHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTS
T ss_pred             cHHHHHHh-cCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccccccC
Confidence            44444432 345689999999999999999999999   99999999999999999999999999997653322222222


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..+++.|+|||.+.+..++.++|+||+|+++|+|++ |+.||...
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~  211 (269)
T 4hcu_A          167 TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  211 (269)
T ss_dssp             TTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Confidence            335778999999998899999999999999999999 99998754

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.92  E-value=6.7e-25  Score=181.06  Aligned_cols=111  Identities=20%  Similarity=0.199  Sum_probs=95.4

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC---ceeeeeecCCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT---RTFTLIRGTRGY  109 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~g~~~y  109 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.......   .......||+.|
T Consensus       118 ~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y  194 (351)
T 3mi9_A          118 LVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWY  194 (351)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCc
Confidence            35689999999999999999999999   999999999999999999999999999987643221   122334589999


Q ss_pred             Cchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          110 MAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +|||.+.+ ..++.++|||||||++|+|++|+.||...
T Consensus       195 ~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  232 (351)
T 3mi9_A          195 RPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  232 (351)
T ss_dssp             CCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC
Confidence            99998875 45799999999999999999999999754

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.92  E-value=9.4e-26  Score=183.90  Aligned_cols=127  Identities=26%  Similarity=0.397  Sum_probs=101.7

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|+.++.+...+.........++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       139 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  215 (332)
T 3qd2_B          139 QMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMD  215 (332)
T ss_dssp             EEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECS
T ss_pred             EEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccc
Confidence            344555555555555445556677788899999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCc-----------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCC
Q 042116           94 PDQTR-----------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNM  143 (208)
Q Consensus        94 ~~~~~-----------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~  143 (208)
                      .....           ......||+.|+|||.+.+..++.++||||||+++|+|++|..|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~  276 (332)
T 3qd2_B          216 QDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQ  276 (332)
T ss_dssp             CC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCH
T ss_pred             cchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCCh
Confidence            43211           112345899999999999989999999999999999999987654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.92  E-value=6.6e-26  Score=193.70  Aligned_cols=123  Identities=20%  Similarity=0.292  Sum_probs=101.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++...........++...++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++..........
T Consensus       266 ~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~  342 (454)
T 1qcf_A          266 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR  342 (454)
T ss_dssp             TCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTT
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceecc
Confidence            34555555555556788999999999999999999999   999999999999999999999999999986533211111


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....++..|+|||.+....++.++||||||+++|||++ |+.||...
T Consensus       343 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~  389 (454)
T 1qcf_A          343 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  389 (454)
T ss_dssp             CSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC
Confidence            22235778999999998899999999999999999999 99999744

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.92  E-value=1.7e-26  Score=184.89  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=99.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+...... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..........
T Consensus       103 ~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  178 (283)
T 3gen_A          103 NGCLLNYLRE-MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSS  178 (283)
T ss_dssp             TCBHHHHHHC-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHST
T ss_pred             CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccccccc
Confidence            3444444433 245689999999999999999999999   999999999999999999999999999976533221112


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....+++.|+|||.+.+..++.++|+||+|+++|+|++ |+.||...
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~  225 (283)
T 3gen_A          179 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF  225 (283)
T ss_dssp             TSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             cCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            22235778999999998889999999999999999998 99999754

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.92  E-value=1.9e-25  Score=182.69  Aligned_cols=110  Identities=23%  Similarity=0.297  Sum_probs=90.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......+|+.|+||
T Consensus        94 ~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~t~~y~aP  169 (324)
T 3mtl_A           94 GNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK-TYDNEVVTLWYRPP  169 (324)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-------------CGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCcc-ccccccCcccccCh
Confidence            44688999999999999999999999   999999999999999999999999999976533222 22334579999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++||||+|+++|+|++|+.||...
T Consensus       170 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (324)
T 3mtl_A          170 DILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS  204 (324)
T ss_dssp             HHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99876 56799999999999999999999999754

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.92  E-value=1.2e-25  Score=184.27  Aligned_cols=109  Identities=23%  Similarity=0.297  Sum_probs=91.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......||+.|+|||
T Consensus       116 ~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE  191 (327)
T 3a62_A          116 GIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT-VTHTFCGTIEYMAPE  191 (327)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-----------CTTSSCCTTSCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcccccccCCc-cccccCCCcCccCHh
Confidence            4678889999999999999999999   999999999999999999999999999875432221 122345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|+|++|+.||...
T Consensus       192 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  224 (327)
T 3a62_A          192 ILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE  224 (327)
T ss_dssp             HHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence            999888999999999999999999999999754

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.92  E-value=6.4e-26  Score=181.86  Aligned_cols=123  Identities=24%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+........+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++...........
T Consensus        93 ~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  169 (288)
T 3kfa_A           93 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH  169 (288)
T ss_dssp             TEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEE
T ss_pred             CCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCccccc
Confidence            34555666555667799999999999999999999999   999999999999999999999999999987654443333


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....+++.|+|||.+.+..++.++|+||||+++|+|++ |..||...
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~  216 (288)
T 3kfa_A          170 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI  216 (288)
T ss_dssp             TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             cCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            33457888999999998899999999999999999999 99998754

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.92  E-value=4.8e-26  Score=186.44  Aligned_cols=111  Identities=26%  Similarity=0.309  Sum_probs=95.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~a  111 (208)
                      ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........ ......+++.|+|
T Consensus       158 ~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  234 (333)
T 2i1m_A          158 NSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMA  234 (333)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSC
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccC
Confidence            34678999999999999999999999   9999999999999999999999999999865433222 1223346788999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       235 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  270 (333)
T 2i1m_A          235 PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI  270 (333)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCccc
Confidence            999998889999999999999999998 99998754

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.92  E-value=2.7e-25  Score=178.68  Aligned_cols=119  Identities=23%  Similarity=0.271  Sum_probs=95.3

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+..+... ....++...+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ....
T Consensus        85 ~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~  159 (288)
T 1ob3_A           85 DLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR-KYTH  159 (288)
T ss_dssp             EHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--------
T ss_pred             CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCcccc-cccc
Confidence            44444432 335688999999999999999999999   999999999999999999999999999976533221 1223


Q ss_pred             eecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..+|+.|+|||.+.+. .++.++||||+|+++|+|++|+.||...
T Consensus       160 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (288)
T 1ob3_A          160 EIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (288)
T ss_dssp             --CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            4589999999998754 5899999999999999999999999754

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.92  E-value=1.9e-25  Score=179.93  Aligned_cols=125  Identities=23%  Similarity=0.260  Sum_probs=96.7

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++ ++..+.... ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        93 e~~~~~-~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (295)
T 3ugc_A           93 EYLPYG-SLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  167 (295)
T ss_dssp             ECCTTC-BHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC-----
T ss_pred             EeCCCC-CHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccccCC
Confidence            344444 444444332 34589999999999999999999998   9999999999999999999999999999876433


Q ss_pred             CCc--eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116           96 QTR--TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        96 ~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ...  ......++..|+|||.+.+..++.++||||||+++|+|++|..|+..
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~  219 (295)
T 3ugc_A          168 KEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKS  219 (295)
T ss_dssp             --------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             cceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCC
Confidence            221  11223366779999999999999999999999999999999998864

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.92  E-value=1.4e-25  Score=189.96  Aligned_cols=125  Identities=27%  Similarity=0.361  Sum_probs=95.0

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC---CcEEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF---WTAKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~dfg~~~   90 (208)
                      ..+|+.++.++..+.   ....+++..+..++.|++.||+|||+.   +|+||||||+|||++.+   ..+||+|||+++
T Consensus       217 v~e~~~~g~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          217 VLELMEGGELFDKVV---GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             EEECCTTCBGGGGTS---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             EEEcCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeecccce
Confidence            345555555554433   345789999999999999999999999   99999999999999654   459999999997


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  .......||+.|+|||++.   ...++.++|||||||++|+|++|+.||...
T Consensus       291 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~  347 (419)
T 3i6u_A          291 ILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH  347 (419)
T ss_dssp             SCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             ecCCC--ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            65332  2223456899999999985   356788999999999999999999999754

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.92  E-value=4e-25  Score=180.38  Aligned_cols=118  Identities=25%  Similarity=0.362  Sum_probs=99.9

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC----cEEEEecCCceecCCCCC
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW----TAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~dfg~~~~~~~~~~   97 (208)
                      +++..+...  ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++    .+||+|||++........
T Consensus       100 ~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~  174 (321)
T 2a2a_A          100 GELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE  174 (321)
T ss_dssp             CBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCC
T ss_pred             CcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccc
Confidence            444444432  45688999999999999999999999   999999999999999887    799999999987644322


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        .....||+.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       175 --~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  221 (321)
T 2a2a_A          175 --FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (321)
T ss_dssp             --CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             --ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence              22345899999999999888999999999999999999999999644

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.92  E-value=4e-25  Score=176.87  Aligned_cols=122  Identities=24%  Similarity=0.347  Sum_probs=100.1

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCceecC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAKLLM   93 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~~~~   93 (208)
                      ++.++.+...+..   ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.   +||+|||.+....
T Consensus        86 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~  159 (284)
T 3kk8_A           86 LVTGGELFEDIVA---REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN  159 (284)
T ss_dssp             CCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             cCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence            3344444444443   25688999999999999999999999   9999999999999976655   9999999997764


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  .....|++.|+|||.+.+..++.++||||+|+++|+|++|+.||...
T Consensus       160 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  210 (284)
T 3kk8_A          160 DSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  210 (284)
T ss_dssp             SSCB--CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCcc--ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence            3322  22345899999999999988999999999999999999999999643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.92  E-value=1.5e-25  Score=179.81  Aligned_cols=124  Identities=21%  Similarity=0.330  Sum_probs=100.0

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEeCCCCCcEEEcCCCc-----EEEEec
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP--IIHCDIKPHNILMDEFWT-----AKISDF   86 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~-----~kl~df   86 (208)
                      ..+|+.++.+...+..  ....+++..++.++.|++.||.|||+.   +  |+||||||+||+++.++.     +||+||
T Consensus        99 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df  173 (287)
T 4f0f_A           99 VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVADF  173 (287)
T ss_dssp             EEECCTTCBHHHHHHC--TTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred             EEEecCCCCHHHHHhc--ccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence            3455555544444432  345789999999999999999999998   7  999999999999987776     999999


Q ss_pred             CCceecCCCCCceeeeeecCCCcCchhhhh--cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           87 GLAKLLMPDQTRTFTLIRGTRGYMAPEWSK--NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        87 g~~~~~~~~~~~~~~~~~g~~~y~aPE~~~--~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+++....    ......||+.|+|||.+.  ...++.++||||+|+++|+|++|+.||...
T Consensus       174 g~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  231 (287)
T 4f0f_A          174 GLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEY  231 (287)
T ss_dssp             TTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             Cccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccc
Confidence            99875422    233455899999999983  445688999999999999999999999754

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.92  E-value=5.2e-25  Score=175.73  Aligned_cols=123  Identities=22%  Similarity=0.313  Sum_probs=100.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCcee
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKL   91 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~   91 (208)
                      .+|+.++.+...+..   ...+++..+..++.|++.||.|||+.   +|+||||||+||++   +.++.++|+|||++..
T Consensus        85 ~e~~~~~~L~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~  158 (277)
T 3f3z_A           85 MELCTGGELFERVVH---KRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR  158 (277)
T ss_dssp             EECCCSCBHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EeccCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEeccccee
Confidence            344444444443332   35688999999999999999999999   99999999999999   7888999999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......  .....||+.|+|||.+.+. ++.++|+||||+++|+|++|+.||...
T Consensus       159 ~~~~~~--~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (277)
T 3f3z_A          159 FKPGKM--MRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAP  210 (277)
T ss_dssp             CCTTSC--BCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCccc--hhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCC
Confidence            644332  2334589999999998754 899999999999999999999999744

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.92  E-value=4.5e-25  Score=189.70  Aligned_cols=109  Identities=27%  Similarity=0.445  Sum_probs=96.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........  .....||+.|+||
T Consensus       110 ~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~--~~~~~gt~~y~aP  184 (476)
T 2y94_A          110 NGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--LRTSCGSPNYAAP  184 (476)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC--BCCCCSCSTTCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccccc--ccccCCCcCeECh
Confidence            45689999999999999999999999   999999999999999999999999999987644322  2334589999999


Q ss_pred             hhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+..+ +.++||||+||++|+|++|+.||...
T Consensus       185 E~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  219 (476)
T 2y94_A          185 EVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD  219 (476)
T ss_dssp             HHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC
Confidence            99987765 68999999999999999999999754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.5e-26  Score=192.56  Aligned_cols=110  Identities=24%  Similarity=0.204  Sum_probs=92.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC---cEEEEecCCceecCCCC-CceeeeeecCCCc
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAKLLMPDQ-TRTFTLIRGTRGY  109 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~dfg~~~~~~~~~-~~~~~~~~g~~~y  109 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+|||++.++   .+||+|||+++...... ........+|+.|
T Consensus       176 ~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y  252 (367)
T 3l9p_A          176 SSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKW  252 (367)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGG
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccE
Confidence            4689999999999999999999999   999999999999998544   59999999997542111 1112233478899


Q ss_pred             CchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          110 MAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       110 ~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      +|||.+.+..++.++|||||||++|+|++ |+.||...
T Consensus       253 ~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~  290 (367)
T 3l9p_A          253 MPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK  290 (367)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999998899999999999999999998 99999754

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.92  E-value=4.9e-25  Score=188.24  Aligned_cols=112  Identities=26%  Similarity=0.320  Sum_probs=90.0

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-----
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-----   97 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-----   97 (208)
                      .+..+..  ....++...+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.......     
T Consensus       142 ~L~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~  216 (458)
T 3rp9_A          142 DFKKLFR--TPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQL  216 (458)
T ss_dssp             EHHHHHH--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCC
T ss_pred             chhhhcc--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhccCcccccccc
Confidence            4444443  345689999999999999999999999   999999999999999999999999999987542211     


Q ss_pred             ---------------------ceeeeeecCCCcCchhhh-hcCCCCccccchhHHHHHHHHHhc
Q 042116           98 ---------------------RTFTLIRGTRGYMAPEWS-KNTPISMKANVFNYGVVLLEIVCC  139 (208)
Q Consensus        98 ---------------------~~~~~~~g~~~y~aPE~~-~~~~~~~~~Di~s~Gv~l~el~tg  139 (208)
                                           ......+||+.|+|||++ ....++.++|||||||++|||++|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          217 PISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             C---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             ccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence                                 112344689999999976 556789999999999999999993

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.92  E-value=2.8e-25  Score=179.12  Aligned_cols=119  Identities=23%  Similarity=0.310  Sum_probs=95.8

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---e
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---T   99 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~   99 (208)
                      ++..+... ....++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........   .
T Consensus       113 ~L~~~l~~-~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~  188 (298)
T 3f66_A          113 DLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHN  188 (298)
T ss_dssp             BHHHHHHC-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC--
T ss_pred             CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccccccchhcccc
Confidence            44444432 446678999999999999999999999   9999999999999999999999999999765432211   1


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcC-cCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCR-RNMEI  145 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~-~p~~~  145 (208)
                      .....+|+.|+|||.+.+..++.++|+||+|+++|++++|. .||..
T Consensus       189 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~  235 (298)
T 3f66_A          189 KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  235 (298)
T ss_dssp             ---CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             ccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            22334678899999999989999999999999999999955 55543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.92  E-value=6.8e-26  Score=183.83  Aligned_cols=108  Identities=25%  Similarity=0.276  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCchhh
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPEW  114 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~  114 (208)
                      +++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........ ......+|+.|+|||.
T Consensus       145 ~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  221 (316)
T 2xir_A          145 LTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  221 (316)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchh
Confidence            78899999999999999999999   9999999999999999999999999999866443322 2223457889999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      +.+..++.++||||||+++|+|++ |+.||...
T Consensus       222 ~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  254 (316)
T 2xir_A          222 IFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  254 (316)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             hccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence            999899999999999999999998 99999754

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.4e-25  Score=188.77  Aligned_cols=109  Identities=23%  Similarity=0.305  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE----cCCCcEEEEecCCceecCCCCC--ceeeeeecCCC
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM----DEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRG  108 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~~  108 (208)
                      .+++..++.++.|++.||.|||+.   +|+||||||+|||+    +.++.+||+|||+++.......  .......||+.
T Consensus       124 ~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~  200 (405)
T 3rgf_A          124 QLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFW  200 (405)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCc
Confidence            489999999999999999999999   99999999999999    6778999999999987643221  12234568999


Q ss_pred             cCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.+. .++.++|||||||++|+|++|+.||...
T Consensus       201 y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          201 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             TCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             ccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            9999998774 4899999999999999999999999754

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.92  E-value=1.2e-24  Score=180.93  Aligned_cols=109  Identities=26%  Similarity=0.430  Sum_probs=94.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........  .....||+.|+||
T Consensus       194 ~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~--~~~~~gt~~y~aP  268 (365)
T 2y7j_A          194 KVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK--LRELCGTPGYLAP  268 (365)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC--BCCCCSCGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecCcccccCCCcc--cccCCCCCCccCh
Confidence            35789999999999999999999999   999999999999999999999999999987654332  2334589999999


Q ss_pred             hhhhc------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+      ..++.++|||||||++|+|++|+.||...
T Consensus       269 E~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  308 (365)
T 2y7j_A          269 EILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR  308 (365)
T ss_dssp             HHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC
Confidence            99863      35788999999999999999999999643

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.92  E-value=1.7e-25  Score=186.34  Aligned_cols=108  Identities=27%  Similarity=0.254  Sum_probs=87.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......  ......||+.|+|||
T Consensus       122 ~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE  196 (371)
T 2xrw_A          122 MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPE  196 (371)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC------------------CTTCCHH
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeeccccccccc--ccCCceecCCccCHH
Confidence            4588999999999999999999999   99999999999999999999999999997653321  223345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ++.+..++.++||||+||++|+|++|+.||...
T Consensus       197 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  229 (371)
T 2xrw_A          197 VILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  229 (371)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            999888999999999999999999999999754

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.92  E-value=9e-25  Score=178.50  Aligned_cols=107  Identities=20%  Similarity=0.340  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      .++...+..++.|++.||+|||+.   +|+||||||+||+++.++ .+||+|||+++.......  .....++..|+|||
T Consensus       126 ~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~~~y~aPE  200 (330)
T 3nsz_A          126 TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--YNVRVASRYFKGPE  200 (330)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSCCSCGGGCCHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc--cccccccccccChh
Confidence            488889999999999999999999   999999999999999776 899999999987644332  22345889999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|||||||++|+|++|+.||...
T Consensus       201 ~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~  234 (330)
T 3nsz_A          201 LLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  234 (330)
T ss_dssp             HHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             hhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence            9876 66899999999999999999999999644

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.92  E-value=1.7e-25  Score=183.18  Aligned_cols=125  Identities=25%  Similarity=0.358  Sum_probs=99.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~   92 (208)
                      +|+.++ .+..+........+++..++.++.|++.||.|||+.   +|+||||||+||+++.   ++.+||+|||+++..
T Consensus       109 e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~  184 (327)
T 3lm5_A          109 EYAAGG-EIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI  184 (327)
T ss_dssp             ECCTTE-EGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC
T ss_pred             EecCCC-cHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCcccccc
Confidence            333343 333333334456789999999999999999999999   9999999999999987   789999999999876


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  .....||+.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       185 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  236 (327)
T 3lm5_A          185 GHACE--LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE  236 (327)
T ss_dssp             -----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCccc--cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            43222  23345899999999999889999999999999999999999999654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.92  E-value=8.4e-26  Score=185.40  Aligned_cols=110  Identities=23%  Similarity=0.250  Sum_probs=94.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... .......+++.|+||
T Consensus       169 ~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  245 (343)
T 1luf_A          169 PPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  245 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecCh
Confidence            5789999999999999999999999   999999999999999999999999999976533221 112234478899999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       246 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  280 (343)
T 1luf_A          246 ESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  280 (343)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             hhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence            99998889999999999999999999 99999744

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.92  E-value=7.9e-26  Score=193.19  Aligned_cols=122  Identities=20%  Similarity=0.261  Sum_probs=96.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++...........+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...........
T Consensus       263 gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~  339 (452)
T 1fmk_A          263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ  339 (452)
T ss_dssp             CBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----------
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCceeccc
Confidence            3444455444556789999999999999999999999   9999999999999999999999999999875433222222


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...++..|+|||.+....++.++||||||+++|||++ |+.||...
T Consensus       340 ~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~  385 (452)
T 1fmk_A          340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  385 (452)
T ss_dssp             ---CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             CCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC
Confidence            3346788999999998899999999999999999999 99998644

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.92  E-value=7.1e-25  Score=183.21  Aligned_cols=120  Identities=24%  Similarity=0.308  Sum_probs=101.3

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc--CCCcEEEEecCCceecCCCCCce
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD--EFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      +.+..+........+++..+..++.|++.||.|||++ ..+|+||||||+|||++  .++.+||+|||+++......   
T Consensus       140 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~---  215 (382)
T 2vx3_A          140 YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRI---  215 (382)
T ss_dssp             CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCC---
T ss_pred             CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccccc---
Confidence            3565666665556799999999999999999999953 23899999999999994  47789999999998764322   


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       216 -~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          216 -YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             -CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence             2345899999999999989999999999999999999999999754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.92  E-value=1.5e-25  Score=193.56  Aligned_cols=127  Identities=24%  Similarity=0.290  Sum_probs=103.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++ .+...........+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       296 E~~~~g-~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  371 (495)
T 1opk_A          296 EFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD  371 (495)
T ss_dssp             ECCTTC-BHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred             EccCCC-CHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence            344444 444445444556789999999999999999999999   9999999999999999999999999999876433


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........++..|+|||.+....++.++||||||+++|||++ |+.||...
T Consensus       372 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~  423 (495)
T 1opk_A          372 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI  423 (495)
T ss_dssp             CEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCC
Confidence            2222222335678999999998889999999999999999999 99998754

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.92  E-value=6.8e-25  Score=189.23  Aligned_cols=123  Identities=26%  Similarity=0.374  Sum_probs=100.7

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCcee
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKL   91 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~   91 (208)
                      .+|+.++.++..+...   ..+++..+..++.|++.||.|||+.   +|+||||||+||+++.   ++.+||+|||++..
T Consensus       115 ~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~  188 (494)
T 3lij_A          115 MECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAV  188 (494)
T ss_dssp             EECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence            4455555555555433   5688999999999999999999999   9999999999999976   45599999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  ......||+.|+|||++. ..++.++||||+||++|+|++|+.||...
T Consensus       189 ~~~~~--~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~  240 (494)
T 3lij_A          189 FENQK--KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ  240 (494)
T ss_dssp             CBTTB--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCCc--cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            64332  223345899999999986 46899999999999999999999999754

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.92  E-value=1.4e-25  Score=185.71  Aligned_cols=107  Identities=26%  Similarity=0.314  Sum_probs=94.2

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....     ....||+.|+|
T Consensus       147 ~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-----~~~~gt~~y~a  218 (348)
T 1u5q_A          147 HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-----NSFVGTPYWMA  218 (348)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-----CCCCSCGGGCC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCCC-----CcccCCcceeC
Confidence            346789999999999999999999999   9999999999999999999999999999765322     23358999999


Q ss_pred             hhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||++.   ...++.++|||||||++|+|++|+.||...
T Consensus       219 PE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          219 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             HHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99984   466889999999999999999999999644

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.92  E-value=1.2e-25  Score=184.40  Aligned_cols=110  Identities=24%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-eeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-FTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......... .....+++.|+||
T Consensus       152 ~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  228 (334)
T 2pvf_A          152 EQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  228 (334)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeCh
Confidence            3588999999999999999999999   99999999999999999999999999998764433211 1223467889999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       229 E~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  263 (334)
T 2pvf_A          229 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  263 (334)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             HHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC
Confidence            99988889999999999999999999 99998654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.92  E-value=8.8e-26  Score=188.56  Aligned_cols=126  Identities=21%  Similarity=0.190  Sum_probs=100.0

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+..  ....++...++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       192 e~~~~g~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~  266 (377)
T 3cbl_A          192 ELVQGGDFLTFLRT--EGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADG  266 (377)
T ss_dssp             ECCTTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred             EcCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence            44444444444432  345688999999999999999999999   9999999999999999999999999999865332


Q ss_pred             CCcee-eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTF-TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~-~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..... ....++..|+|||.+....++.++||||||+++||+++ |+.||...
T Consensus       267 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~  319 (377)
T 3cbl_A          267 VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL  319 (377)
T ss_dssp             EEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTS
T ss_pred             ceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            11111 11224667999999998889999999999999999998 99998644

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.92  E-value=7.7e-25  Score=181.82  Aligned_cols=111  Identities=27%  Similarity=0.413  Sum_probs=95.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce--eeeeecCCCcC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--FTLIRGTRGYM  110 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~--~~~~~g~~~y~  110 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.........  .....||+.|+
T Consensus       122 ~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~  198 (364)
T 3qyz_A          122 TQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR  198 (364)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGC
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCC
Confidence            35689999999999999999999999   99999999999999999999999999998764332211  23346899999


Q ss_pred             chhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+ ..++.++||||+||++|+|++|+.||...
T Consensus       199 aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  235 (364)
T 3qyz_A          199 APEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK  235 (364)
T ss_dssp             CHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCC
Confidence            9998654 45899999999999999999999999755

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.92  E-value=1.5e-25  Score=187.06  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=89.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-  100 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-  100 (208)
                      +++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.......... 
T Consensus       131 ~sL~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  206 (373)
T 2qol_A          131 GSLDSFLRK-HDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYT  206 (373)
T ss_dssp             CBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC---------------
T ss_pred             CcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccccCCcccee
Confidence            344444432 345689999999999999999999999   999999999999999999999999999987643322111 


Q ss_pred             -eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 -TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 -~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                       ....++..|+|||++.+..++.++||||||+++||+++ |+.||...
T Consensus       207 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~  254 (373)
T 2qol_A          207 TRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM  254 (373)
T ss_dssp             -------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred             ccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence             12235678999999999999999999999999999998 99999644

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.92  E-value=3.2e-25  Score=184.76  Aligned_cols=116  Identities=27%  Similarity=0.367  Sum_probs=88.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+...   ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....    .
T Consensus       117 ~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~----~  186 (367)
T 2fst_X          117 GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTADE----M  186 (367)
T ss_dssp             CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC---------------
T ss_pred             CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccccccccc----C
Confidence            4455555433   5689999999999999999999999   9999999999999999999999999999765322    2


Q ss_pred             eeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||.+.+ ..++.++||||+||++|+|++|+.||...
T Consensus       187 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  233 (367)
T 2fst_X          187 TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  233 (367)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            33458999999999876 67899999999999999999999999754

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.92  E-value=5.8e-26  Score=182.78  Aligned_cols=120  Identities=24%  Similarity=0.308  Sum_probs=99.0

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee-
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-  100 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~-  100 (208)
                      +++..+...  ...++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........... 
T Consensus       102 ~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  176 (291)
T 1xbb_A          102 GPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA  176 (291)
T ss_dssp             EEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC
T ss_pred             CCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccc
Confidence            344444433  34688999999999999999999999   999999999999999999999999999987654433211 


Q ss_pred             -eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 -TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 -~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                       ....++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       177 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  224 (291)
T 1xbb_A          177 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  224 (291)
T ss_dssp             ----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             cccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence             22335688999999988888999999999999999999 99999754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.92  E-value=3.4e-25  Score=177.00  Aligned_cols=119  Identities=25%  Similarity=0.396  Sum_probs=102.7

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+........+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........  .
T Consensus       104 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~  178 (284)
T 2a19_B          104 KGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGK--R  178 (284)
T ss_dssp             SCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSC--C
T ss_pred             CCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECcchhheecccccc--c
Confidence            34666666666667899999999999999999999999   999999999999999999999999999987644322  2


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ....|++.|+|||.+.+..++.++|+||||+++|+|++|..|+.
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~  222 (284)
T 2a19_B          179 TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF  222 (284)
T ss_dssp             CCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHH
T ss_pred             cccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcch
Confidence            23358999999999998889999999999999999999998874

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.92  E-value=8.2e-25  Score=182.89  Aligned_cols=110  Identities=26%  Similarity=0.339  Sum_probs=95.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ....+++..+..++.|++.||.|||+.   +|+||||||+||+++ .++.+||+|||+++.......  .....+|+.|+
T Consensus       134 ~~~~l~~~~~~~i~~qi~~aL~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~  208 (383)
T 3eb0_A          134 SGRSIPMNLISIYIYQLFRAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYR  208 (383)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCcc
Confidence            456789999999999999999999998   999999999999997 688999999999987644332  22345799999


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+. .++.++||||+||++|+|++|+.||...
T Consensus       209 aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  245 (383)
T 3eb0_A          209 APELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGE  245 (383)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCC
Confidence            99998764 4899999999999999999999999754

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.92  E-value=6.2e-25  Score=194.18  Aligned_cols=126  Identities=24%  Similarity=0.289  Sum_probs=98.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      +|+.++.+...+.  .....+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       415 E~~~~g~L~~~l~--~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~  489 (613)
T 2ozo_A          415 EMAGGGPLHKFLV--GKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD  489 (613)
T ss_dssp             ECCTTCBHHHHHT--TCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred             EeCCCCcHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence            4444444443332  2345689999999999999999999999   9999999999999999999999999999765432


Q ss_pred             CCce--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRT--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....  .....+++.|+|||++....++.++|||||||++|||++ |+.||...
T Consensus       490 ~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~  543 (613)
T 2ozo_A          490 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  543 (613)
T ss_dssp             ------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            2211  112235678999999998999999999999999999998 99999754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=175.69  Aligned_cols=110  Identities=25%  Similarity=0.313  Sum_probs=90.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........ ......||..|+||
T Consensus        96 ~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~y~aP  171 (311)
T 4agu_A           96 QRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD-YYDDEVATRWYRSP  171 (311)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC-------------GGGCCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc-ccCCCcCCccccCh
Confidence            45689999999999999999999999   999999999999999999999999999987643222 12334589999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++|+||+|+++|+|++|+.||...
T Consensus       172 E~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  206 (311)
T 4agu_A          172 ELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGK  206 (311)
T ss_dssp             HHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            99876 56799999999999999999999999754

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.92  E-value=7.3e-26  Score=185.12  Aligned_cols=121  Identities=26%  Similarity=0.279  Sum_probs=100.1

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce-
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT-   99 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~-   99 (208)
                      ++++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......... 
T Consensus       110 ~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~  185 (327)
T 3lxl_A          110 SGCLRDFLQR-HRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYV  185 (327)
T ss_dssp             TCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEE
T ss_pred             CCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceecccCCccce
Confidence            3344444433 234689999999999999999999999   99999999999999999999999999998765433321 


Q ss_pred             -eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          100 -FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       100 -~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                       .....++..|+|||.+.+..++.++||||||+++|+|++|+.||..
T Consensus       186 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~  232 (327)
T 3lxl_A          186 VREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCS  232 (327)
T ss_dssp             CSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             eeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcc
Confidence             1223477889999999988889999999999999999999999864

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.92  E-value=6.4e-25  Score=181.41  Aligned_cols=111  Identities=27%  Similarity=0.343  Sum_probs=95.0

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHH--hCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCceeeeeecCC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLH--NECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTR  107 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH--~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~  107 (208)
                      .....++...+..++.|++.||.|||  +.   +|+||||||+||+++. ++.+||+|||+++.......  .....||+
T Consensus       121 ~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~gt~  195 (360)
T 3e3p_A          121 RRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEP--NVAYICSR  195 (360)
T ss_dssp             TTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSC--CCSTTSCG
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCC--cccccCCc
Confidence            35567888999999999999999999  77   9999999999999996 89999999999987643322  22335799


Q ss_pred             CcCchhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          108 GYMAPEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       108 ~y~aPE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .|+|||.+.+.. ++.++|||||||++|+|++|+.||...
T Consensus       196 ~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  235 (360)
T 3e3p_A          196 YYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD  235 (360)
T ss_dssp             GGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence            999999986544 799999999999999999999999754

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.92  E-value=3.6e-25  Score=176.93  Aligned_cols=119  Identities=26%  Similarity=0.313  Sum_probs=95.9

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++...........+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++.......    
T Consensus        99 ~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~----  171 (278)
T 1byg_A           99 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ----  171 (278)
T ss_dssp             TEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------
T ss_pred             CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccccc----
Confidence            33565666555555688999999999999999999999   99999999999999999999999999987543221    


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  218 (278)
T 1byg_A          172 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  218 (278)
T ss_dssp             ----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred             cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence            12246889999999998889999999999999999998 99998754

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.92  E-value=2.3e-25  Score=182.17  Aligned_cols=108  Identities=29%  Similarity=0.282  Sum_probs=92.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......  ......+++.|+|||
T Consensus       137 ~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE  211 (327)
T 1fvr_A          137 STLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIE  211 (327)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEESSCEEC--CC----CCTTTCCHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeEEEcccCcCccccccc--cccCCCCCccccChh
Confidence            5789999999999999999999999   99999999999999999999999999987432111  112234678899999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .+.+..++.++||||||+++|+|++ |+.||...
T Consensus       212 ~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~  245 (327)
T 1fvr_A          212 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  245 (327)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hhccccCCchhcchHHHHHHHHHHcCCCCCCCCC
Confidence            9988888999999999999999998 99999754

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.92  E-value=1.3e-24  Score=184.61  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=93.0

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc----
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR----   98 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~----   98 (208)
                      .+..+..  ....++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++........    
T Consensus       115 ~L~~~~~--~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~  189 (432)
T 3n9x_A          115 DLKKLFK--TPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVN  189 (432)
T ss_dssp             EHHHHHH--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC----------
T ss_pred             CHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccc
Confidence            4444443  345689999999999999999999999   9999999999999999999999999999876432211    


Q ss_pred             -----------------eeeeeecCCCcCchhhh-hcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           99 -----------------TFTLIRGTRGYMAPEWS-KNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        99 -----------------~~~~~~g~~~y~aPE~~-~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                                       ......||+.|+|||++ ....++.++||||+||++|||++|..|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          190 DLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             ---------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             cccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence                             12445689999999986 55668999999999999999998655543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.92  E-value=9.7e-25  Score=178.08  Aligned_cols=110  Identities=27%  Similarity=0.376  Sum_probs=93.2

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCceecCCCCCceeeeeecCCC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAKLLMPDQTRTFTLIRGTRG  108 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~~~~~~~~~~~~~~~g~~~  108 (208)
                      ....++...+..++.|++.||.|||+.   +|+||||||+||+++.++.   +||+|||+++......  ......||+.
T Consensus       107 ~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~gt~~  181 (322)
T 2ycf_A          107 GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS--LMRTLCGTPT  181 (322)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCH--HHHHHHSCCT
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCccceeccccc--ccccccCCcC
Confidence            345788999999999999999999999   9999999999999987654   9999999998764321  1223458999


Q ss_pred             cCchhhhh---cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSK---NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~---~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.   ...++.++||||||+++|+|++|+.||...
T Consensus       182 y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  222 (322)
T 2ycf_A          182 YLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH  222 (322)
T ss_dssp             TCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCST
T ss_pred             ccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            99999874   456789999999999999999999999755

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=3.6e-25  Score=179.89  Aligned_cols=120  Identities=24%  Similarity=0.285  Sum_probs=90.2

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..+...  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++............
T Consensus       119 ~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  193 (309)
T 2h34_A          119 VDLAAMLRR--QGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLG  193 (309)
T ss_dssp             EEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-------------
T ss_pred             CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccccccccccc
Confidence            345444443  35689999999999999999999999   9999999999999999999999999998765443333333


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       194 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  238 (309)
T 2h34_A          194 NTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD  238 (309)
T ss_dssp             ---CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred             ccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence            445899999999998888999999999999999999999999754

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.92  E-value=1.5e-24  Score=174.13  Aligned_cols=125  Identities=28%  Similarity=0.376  Sum_probs=97.5

Q ss_pred             EEeCCCCcchHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCcee
Q 042116           16 EVKGKRKQFGAVVRR-RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKL   91 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~   91 (208)
                      +|+.++.+...+... .....++...+..++.|++.||.|||+.   +|+||||||+||++   +.++.+||+|||++..
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~  176 (285)
T 3is5_A          100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL  176 (285)
T ss_dssp             CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred             EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence            344455555555443 2446789999999999999999999999   99999999999999   4567899999999976


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......  .....|++.|+|||.+. ..++.++|+||||+++|+|++|+.||...
T Consensus       177 ~~~~~~--~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~  228 (285)
T 3is5_A          177 FKSDEH--STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT  228 (285)
T ss_dssp             ------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCccc--CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC
Confidence            533222  23345899999999986 46889999999999999999999999744

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.92  E-value=8.3e-25  Score=176.73  Aligned_cols=120  Identities=26%  Similarity=0.311  Sum_probs=100.7

Q ss_pred             chHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeee
Q 042116           24 FGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTL  102 (208)
Q Consensus        24 ~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~  102 (208)
                      +..+........+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........ .....
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  170 (305)
T 2wtk_C           94 MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRT  170 (305)
T ss_dssp             HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECC
T ss_pred             HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccccCcccccccccc
Confidence            44555555667899999999999999999999999   999999999999999999999999999987643222 22234


Q ss_pred             eecCCCcCchhhhhcCCC--CccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPI--SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~--~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..|+..|+|||.+.+...  +.++|+||||+++|+|++|+.||...
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (305)
T 2wtk_C          171 SQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD  216 (305)
T ss_dssp             CCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            458999999999876443  77999999999999999999999754

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.92  E-value=1.2e-24  Score=174.87  Aligned_cols=116  Identities=24%  Similarity=0.303  Sum_probs=96.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCCc
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP--IIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTR   98 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~~   98 (208)
                      +++......  ...++...+..++.|++.||.|||+.   +  |+||||||+||+++ .++.+||+|||++.......  
T Consensus       114 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~--  186 (290)
T 1t4h_A          114 GTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF--  186 (290)
T ss_dssp             CBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS--
T ss_pred             CCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccc--
Confidence            344444432  35688999999999999999999998   7  99999999999997 78899999999986543322  


Q ss_pred             eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           99 TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        99 ~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       .....|++.|+|||.+.+ .++.++|+||+|+++|+|++|+.||...
T Consensus       187 -~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~  232 (290)
T 1t4h_A          187 -AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  232 (290)
T ss_dssp             -BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             -cccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCc
Confidence             233458999999998874 5899999999999999999999999653

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.92  E-value=1.4e-24  Score=173.58  Aligned_cols=118  Identities=22%  Similarity=0.363  Sum_probs=96.6

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC----cEEEEecCCceecCCCCC
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW----TAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~dfg~~~~~~~~~~   97 (208)
                      +.+......  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++    .+||+|||.+........
T Consensus        93 ~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~  167 (283)
T 3bhy_A           93 GELFDFLAE--KESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE  167 (283)
T ss_dssp             CBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC----
T ss_pred             CcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCc
Confidence            344444432  35689999999999999999999999   999999999999998876    799999999987643322


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        .....+++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       168 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  214 (283)
T 3bhy_A          168 --FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE  214 (283)
T ss_dssp             ------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             --ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc
Confidence              22345899999999999888999999999999999999999999754

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.92  E-value=1.1e-25  Score=183.46  Aligned_cols=110  Identities=21%  Similarity=0.254  Sum_probs=93.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........ ......+++.|+||
T Consensus       133 ~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  209 (322)
T 1p4o_A          133 APPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  209 (322)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccCh
Confidence            4668899999999999999999999   9999999999999999999999999998755322211 11223467889999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       210 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  244 (322)
T 1p4o_A          210 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL  244 (322)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC
Confidence            99998889999999999999999999 88888643

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.92  E-value=1.1e-24  Score=173.51  Aligned_cols=111  Identities=31%  Similarity=0.400  Sum_probs=94.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~a  111 (208)
                      ...++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||.+........ .......|+..|+|
T Consensus        99 ~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  175 (276)
T 2yex_A           99 DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA  175 (276)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccC
Confidence            35688999999999999999999999   999999999999999999999999999976532221 11233458999999


Q ss_pred             hhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+..+ +.++|+||||+++|+|++|+.||...
T Consensus       176 PE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  211 (276)
T 2yex_A          176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  211 (276)
T ss_dssp             GGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             hHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Confidence            999987665 77899999999999999999999755

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.92  E-value=1.3e-24  Score=187.86  Aligned_cols=123  Identities=28%  Similarity=0.395  Sum_probs=101.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC---cEEEEecCCcee
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAKL   91 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~dfg~~~~   91 (208)
                      .+|+.++.++..+..   ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++   .+||+|||+++.
T Consensus       125 ~e~~~gg~L~~~l~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  198 (504)
T 3q5i_A          125 TEFYEGGELFEQIIN---RHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVDFGLSSF  198 (504)
T ss_dssp             EECCTTCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEEECCCTTCEE
T ss_pred             EecCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEEEEECCCCEE
Confidence            344555555555543   35689999999999999999999999   999999999999998775   699999999987


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......  .....||+.|+|||.+. ..++.++||||+||++|+|++|+.||...
T Consensus       199 ~~~~~~--~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~  250 (504)
T 3q5i_A          199 FSKDYK--LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQ  250 (504)
T ss_dssp             CCTTSC--BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCCCc--cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            644322  23345899999999987 46899999999999999999999999754

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=175.29  Aligned_cols=120  Identities=23%  Similarity=0.395  Sum_probs=80.8

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+...... ....++...++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++......... ..
T Consensus        96 ~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~-~~  170 (278)
T 3cok_A           96 GEMNRYLKN-RVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK-HY  170 (278)
T ss_dssp             EEHHHHHHT-CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC--------
T ss_pred             CcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc-ce
Confidence            344444432 335689999999999999999999999   9999999999999999999999999999876432221 22


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       171 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  215 (278)
T 3cok_A          171 TLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD  215 (278)
T ss_dssp             ---------------------CTHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             eccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCh
Confidence            345899999999998888899999999999999999999999754

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=2.3e-25  Score=178.92  Aligned_cols=121  Identities=23%  Similarity=0.280  Sum_probs=99.9

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce--
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~--   99 (208)
                      +++..+.. .....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++..........  
T Consensus        94 ~~L~~~l~-~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  169 (287)
T 1u59_A           94 GPLHKFLV-GKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA  169 (287)
T ss_dssp             EEHHHHHT-TCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECC
T ss_pred             CCHHHHHH-hCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeec
Confidence            34444442 2345689999999999999999999999   99999999999999999999999999998764433221  


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....+++.|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       170 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  217 (287)
T 1u59_A          170 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  217 (287)
T ss_dssp             CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence            122235788999999988889999999999999999998 99999754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.92  E-value=6.7e-25  Score=188.87  Aligned_cols=121  Identities=26%  Similarity=0.378  Sum_probs=97.7

Q ss_pred             EeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc---CCCcEEEEecCCceecC
Q 042116           17 VKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKLLM   93 (208)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~dfg~~~~~~   93 (208)
                      |+.++.++..+...   ..++...+..++.|++.||.|||+.   +|+||||||+||+++   .++.+||+|||+++...
T Consensus       102 ~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  175 (486)
T 3mwu_A          102 LYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ  175 (486)
T ss_dssp             CCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred             cCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence            34444455554433   5689999999999999999999999   999999999999995   45679999999997653


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...
T Consensus       176 ~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          176 QNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             CC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCC--ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            322  2233458999999999875 5899999999999999999999999754

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.92  E-value=1e-25  Score=184.07  Aligned_cols=116  Identities=28%  Similarity=0.411  Sum_probs=97.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCCcee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      +.+......  ...++...++.++.|++.||.|||+.   +|+||||||+||+++ .++.+||+|||+++......   .
T Consensus       134 ~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~---~  205 (320)
T 3a99_A          134 QDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV---Y  205 (320)
T ss_dssp             EEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSC---B
T ss_pred             ccHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCcccccccccc---c
Confidence            444444433  35788999999999999999999999   999999999999998 77899999999998764322   2


Q ss_pred             eeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ....||+.|+|||++.+..+ +.++||||||+++|+|++|+.||..
T Consensus       206 ~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  251 (320)
T 3a99_A          206 TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH  251 (320)
T ss_dssp             CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             cCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCC
Confidence            23458999999999887665 6889999999999999999999963

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.92  E-value=3.6e-25  Score=181.44  Aligned_cols=118  Identities=21%  Similarity=0.242  Sum_probs=90.9

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE-----cCCCcEEEEecCCceecCCCCC
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM-----DEFWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-----~~~~~~kl~dfg~~~~~~~~~~   97 (208)
                      .+..+..  ....++...+..++.|++.||.|||+.   +|+||||||+||++     +.++.+||+|||+++.......
T Consensus       118 ~L~~~~~--~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~  192 (329)
T 3gbz_A          118 DLKKYMD--KNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIR  192 (329)
T ss_dssp             EHHHHHH--HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC----
T ss_pred             CHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCccc
Confidence            4444443  234689999999999999999999999   99999999999999     4555699999999976543222


Q ss_pred             ceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                       ......+|+.|+|||++.+. .++.++|||||||++|+|++|+.||...
T Consensus       193 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  241 (329)
T 3gbz_A          193 -QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD  241 (329)
T ss_dssp             --------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC
Confidence             22334579999999998764 4799999999999999999999999754

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.91  E-value=2.7e-25  Score=177.67  Aligned_cols=107  Identities=25%  Similarity=0.369  Sum_probs=92.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++.......   .....|++.|+|||
T Consensus       104 ~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~~~y~aPE  177 (279)
T 3fdn_A          104 SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR---RTDLCGTLDYLPPE  177 (279)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC-----------CCCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCccc---ccccCCCCCccCHh
Confidence            5689999999999999999999998   99999999999999999999999999885543222   22345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|+|++|+.||...
T Consensus       178 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  210 (279)
T 3fdn_A          178 MIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  210 (279)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HhccCCCCccchhHhHHHHHHHHHHCCCCCCCC
Confidence            999888999999999999999999999999744

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.91  E-value=3.7e-25  Score=182.04  Aligned_cols=120  Identities=20%  Similarity=0.287  Sum_probs=83.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceecCCCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ++.+...........+++..++.++.|++.||.|||+.   +|+||||||+||+++.   ++.+||+|||+++...... 
T Consensus       110 gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~-  185 (336)
T 3fhr_A          110 GGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA-  185 (336)
T ss_dssp             TEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-----
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceeccccc-
Confidence            34555555555556799999999999999999999999   9999999999999976   4559999999998654322 


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        .....+|+.|+|||.+....++.++||||||+++|+|++|+.||...
T Consensus       186 --~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (336)
T 3fhr_A          186 --LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSN  232 (336)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             --cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence              22345799999999998888899999999999999999999999754

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.91  E-value=6e-25  Score=176.12  Aligned_cols=107  Identities=23%  Similarity=0.311  Sum_probs=95.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++........   ....|++.|+|||
T Consensus       109 ~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~y~aPE  182 (284)
T 2vgo_A          109 GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRR---RTMCGTLDYLPPE  182 (284)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCB---CCCCSCGGGCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccccc---ccccCCCCcCCHH
Confidence            4688999999999999999999998   999999999999999999999999999876543222   2345899999999


Q ss_pred             hhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+..++.++|+||||+++|+|++|+.||...
T Consensus       183 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  215 (284)
T 2vgo_A          183 MIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP  215 (284)
T ss_dssp             HHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HhccCCCCcccchhhHHHHHHHHHHCCCCCCCC
Confidence            999888999999999999999999999999744

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.91  E-value=1e-24  Score=175.92  Aligned_cols=119  Identities=19%  Similarity=0.271  Sum_probs=98.9

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--e
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--T   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--~   99 (208)
                      +++..+... ....++...++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.........  .
T Consensus       110 ~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  185 (302)
T 4e5w_A          110 GSLKEYLPK-NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTV  185 (302)
T ss_dssp             CBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEEC
T ss_pred             CcHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccccccCCCcceec
Confidence            344444432 345689999999999999999999999   9999999999999999999999999999876544321  1


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      .....+|..|+|||.+.+..++.++|+||+|+++|+|++|+.|+.
T Consensus       186 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  230 (302)
T 4e5w_A          186 KDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDS  230 (302)
T ss_dssp             CCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             cCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence            122347778999999998889999999999999999999998864

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.91  E-value=9.4e-26  Score=178.89  Aligned_cols=121  Identities=23%  Similarity=0.294  Sum_probs=98.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++..+... ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++............
T Consensus        88 ~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~  163 (267)
T 3t9t_A           88 GCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST  163 (267)
T ss_dssp             CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTT
T ss_pred             CcHHHHHhh-CcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccccccccc
Confidence            345444433 335688999999999999999999999   9999999999999999999999999998765322111112


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...++..|+|||.+....++.++|+||+|+++|+|++ |+.||...
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  209 (267)
T 3t9t_A          164 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  209 (267)
T ss_dssp             STTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC
Confidence            2236778999999998889999999999999999999 89998644

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.91  E-value=7.8e-25  Score=177.53  Aligned_cols=120  Identities=20%  Similarity=0.364  Sum_probs=90.6

Q ss_pred             cchHHHHh--hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           23 QFGAVVRR--RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        23 ~~~~l~~~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      .+..+...  .....++...++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++........ ..
T Consensus       118 ~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~  193 (310)
T 2wqm_A          118 DLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT-AA  193 (310)
T ss_dssp             BHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC--------------
T ss_pred             CHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCc-cc
Confidence            44444433  2346689999999999999999999999   999999999999999999999999999876543222 12


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....++..|+|||.+....++.++|+||||+++|+|++|+.||...
T Consensus       194 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  239 (310)
T 2wqm_A          194 HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  239 (310)
T ss_dssp             -----CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             cccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            2345899999999999888999999999999999999999999754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.91  E-value=2.8e-24  Score=176.55  Aligned_cols=119  Identities=25%  Similarity=0.382  Sum_probs=100.5

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..+...  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......... ..
T Consensus       126 ~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-~~  199 (335)
T 2owb_A          126 RSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER-KK  199 (335)
T ss_dssp             CBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCC-BC
T ss_pred             CCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCccc-cc
Confidence            344444433  35789999999999999999999999   9999999999999999999999999999876432221 23


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|+..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       200 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  244 (335)
T 2owb_A          200 VLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  244 (335)
T ss_dssp             CCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence            345899999999999888999999999999999999999999644

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.91  E-value=4.5e-25  Score=180.97  Aligned_cols=110  Identities=27%  Similarity=0.252  Sum_probs=91.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---eeee
Q 042116           34 KEKESNLGLLLILPQPSCNVYLH--------NECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTL  102 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH--------~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~  102 (208)
                      ..+++..++.++.|++.||.|||        +.   +|+||||||+||+++.++.+||+|||++.........   ....
T Consensus       134 ~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~  210 (342)
T 1b6c_B          134 YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH  210 (342)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCS
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEEECCCceecccccccccccccc
Confidence            46899999999999999999999        66   9999999999999999999999999999876443322   1123


Q ss_pred             eecCCCcCchhhhhcCC------CCccccchhHHHHHHHHHhc----------CcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTP------ISMKANVFNYGVVLLEIVCC----------RRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~------~~~~~Di~s~Gv~l~el~tg----------~~p~~~~  146 (208)
                      ..||+.|+|||.+.+..      ++.++||||||+++|+|++|          +.||...
T Consensus       211 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~  270 (342)
T 1b6c_B          211 RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDL  270 (342)
T ss_dssp             CCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             CCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCcccc
Confidence            45899999999987652      33689999999999999999          6677544

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.91  E-value=4.2e-24  Score=172.02  Aligned_cols=119  Identities=25%  Similarity=0.382  Sum_probs=100.1

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..+...  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++......... ..
T Consensus       100 ~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~-~~  173 (294)
T 2rku_A          100 RSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER-KK  173 (294)
T ss_dssp             CBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCC-BC
T ss_pred             CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCccc-cc
Confidence            344444432  35789999999999999999999999   9999999999999999999999999999876432221 22


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  218 (294)
T 2rku_A          174 VLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  218 (294)
T ss_dssp             CCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            345899999999998888899999999999999999999999644

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.91  E-value=8.4e-25  Score=175.77  Aligned_cols=121  Identities=26%  Similarity=0.335  Sum_probs=96.7

Q ss_pred             CcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCce
Q 042116           22 KQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        22 ~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      +.+..+.... .....++..+..++.|++.||.|||+.   +++||||||+||+++. ++.+||+|||++........ .
T Consensus       104 ~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~-~  179 (295)
T 2clq_A          104 GSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP-C  179 (295)
T ss_dssp             EEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----
T ss_pred             CCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCCC-c
Confidence            3454444433 334567888889999999999999999   9999999999999987 88999999999987643221 1


Q ss_pred             eeeeecCCCcCchhhhhcCC--CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTP--ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~--~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....|++.|+|||.+....  ++.++|+||||+++|+|++|+.||...
T Consensus       180 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             -CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence            22345899999999987643  789999999999999999999999643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.91  E-value=6.7e-25  Score=194.64  Aligned_cols=126  Identities=24%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.+...+ .  ....+++..++.++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       448 ~E~~~~g~L~~~l-~--~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          448 MEMAELGPLNKYL-Q--QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  521 (635)
T ss_dssp             EECCTTEEHHHHH-H--HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC
T ss_pred             EEccCCCCHHHHH-h--hCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCcccccc
Confidence            3444444444443 2  345689999999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCc--eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTR--TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....  ......+++.|+|||++....++.++|||||||++|||++ |+.||...
T Consensus       522 ~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~  576 (635)
T 4fl3_A          522 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  576 (635)
T ss_dssp             -------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             CccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            3221  1222346788999999999999999999999999999998 99999754

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.91  E-value=4.6e-25  Score=179.95  Aligned_cols=122  Identities=20%  Similarity=0.244  Sum_probs=95.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++.+..+........++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........ ..
T Consensus       111 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~  186 (326)
T 2x7f_A          111 AGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG-RR  186 (326)
T ss_dssp             TEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC----------
T ss_pred             CCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCceecCcCcc-cc
Confidence            34566666655567889999999999999999999999   999999999999999999999999999876533211 12


Q ss_pred             eeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....|++.|+|||.+.     ...++.++||||||+++|+|++|+.||...
T Consensus       187 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  237 (326)
T 2x7f_A          187 NTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  237 (326)
T ss_dssp             ----CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            2345899999999986     456889999999999999999999999643

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.91  E-value=3.1e-25  Score=197.42  Aligned_cols=127  Identities=18%  Similarity=0.221  Sum_probs=99.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.+. .+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       469 ~E~~~~g~L~-~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~  543 (656)
T 2j0j_A          469 MELCTLGELR-SFLQV-RKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  543 (656)
T ss_dssp             EECCTTCBHH-HHHHH-TTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred             EEcCCCCcHH-HHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence            3444444444 44332 234688999999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..........+++.|+|||.+.+..++.++||||||+++|||++ |..||...
T Consensus       544 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~  596 (656)
T 2j0j_A          544 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV  596 (656)
T ss_dssp             ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence            33322333446789999999998899999999999999999997 99998754

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.91  E-value=3.4e-25  Score=180.70  Aligned_cols=111  Identities=25%  Similarity=0.287  Sum_probs=95.7

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--eeeeeecCCCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRGY  109 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~g~~~y  109 (208)
                      ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++.........  ......++..|
T Consensus       127 ~~~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y  203 (318)
T 3lxp_A          127 PRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW  203 (318)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGG
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCcee
Confidence            344589999999999999999999999   9999999999999999999999999999877544332  12233477889


Q ss_pred             CchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          110 MAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       110 ~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      +|||.+.+..++.++||||||+++|+|++|+.||..
T Consensus       204 ~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~  239 (318)
T 3lxp_A          204 YAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQS  239 (318)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             eChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccc
Confidence            999999988899999999999999999999999864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.91  E-value=1.2e-24  Score=178.74  Aligned_cols=108  Identities=28%  Similarity=0.305  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC--cEEEEecCCceecCCCCC---ceeeeeecCCCcC
Q 042116           36 KESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW--TAKISDFGLAKLLMPDQT---RTFTLIRGTRGYM  110 (208)
Q Consensus        36 ~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~--~~kl~dfg~~~~~~~~~~---~~~~~~~g~~~y~  110 (208)
                      ++...+..++.|++.||.|||+.   +|+||||||+||+++.++  .+||+|||+++.......   .......||+.|+
T Consensus       165 ~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~  241 (345)
T 3hko_A          165 QREKLISNIMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFV  241 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCcccc
Confidence            35667788999999999999999   999999999999998766  899999999986533221   1223445899999


Q ss_pred             chhhhhc--CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKN--TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+..  ..++.++||||||+++|+|++|+.||...
T Consensus       242 aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  279 (345)
T 3hko_A          242 APEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGV  279 (345)
T ss_dssp             CHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            9999865  66889999999999999999999999644

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.91  E-value=3.8e-25  Score=175.89  Aligned_cols=112  Identities=29%  Similarity=0.393  Sum_probs=89.4

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC--------CCcEEEEecCCceecCCCCCceeeee
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE--------FWTAKISDFGLAKLLMPDQTRTFTLI  103 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--------~~~~kl~dfg~~~~~~~~~~~~~~~~  103 (208)
                      ....+++..+..++.|++.||.|||+....+|+||||||+||+++.        ++.+||+|||++........   ...
T Consensus        98 ~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~  174 (271)
T 3dtc_A           98 SGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK---MSA  174 (271)
T ss_dssp             TSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---------------
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccc---cCC
Confidence            3567899999999999999999999982222999999999999986        67899999999976533222   233


Q ss_pred             ecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          104 RGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       104 ~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       175 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  217 (271)
T 3dtc_A          175 AGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI  217 (271)
T ss_dssp             -CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred             CCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            5899999999999988999999999999999999999999743

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=8.5e-25  Score=179.60  Aligned_cols=121  Identities=22%  Similarity=0.281  Sum_probs=93.7

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce--
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~--   99 (208)
                      +++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.........  
T Consensus       131 ~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  206 (333)
T 1mqb_A          131 GALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYT  206 (333)
T ss_dssp             EEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-------------
T ss_pred             CcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhccccccccc
Confidence            344444432 345789999999999999999999999   99999999999999999999999999998754332211  


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....++..|+|||.+.+..++.++||||||+++|++++ |+.||...
T Consensus       207 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~  254 (333)
T 1mqb_A          207 TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL  254 (333)
T ss_dssp             ----CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence            122235778999999998889999999999999999999 99999644

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.91  E-value=1.1e-24  Score=178.45  Aligned_cols=110  Identities=25%  Similarity=0.305  Sum_probs=90.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......|+..|+||
T Consensus       118 ~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~t~~y~aP  193 (331)
T 4aaa_A          118 PNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE-VYDDEVATRWYRAP  193 (331)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC-------------CCCCCTTCCH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc-ccCCCcCCccccCc
Confidence            45689999999999999999999999   999999999999999999999999999976543222 12334589999999


Q ss_pred             hhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+. .++.++||||+|+++|+|++|+.||...
T Consensus       194 E~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (331)
T 4aaa_A          194 ELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD  228 (331)
T ss_dssp             HHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            998765 6789999999999999999999999754

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.91  E-value=2.2e-24  Score=175.74  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=102.6

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..+........++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......  ...
T Consensus       103 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~  177 (326)
T 1blx_A          103 QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM--ALT  177 (326)
T ss_dssp             CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG--GGC
T ss_pred             CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCcccccccCCC--Ccc
Confidence            3555666555556689999999999999999999999   99999999999999999999999999987653221  223


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|+..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       178 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  222 (326)
T 1blx_A          178 SVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  222 (326)
T ss_dssp             CCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence            345899999999999888999999999999999999999999754

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.91  E-value=1.2e-24  Score=179.34  Aligned_cols=111  Identities=25%  Similarity=0.339  Sum_probs=93.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---------eeeee
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---------TFTLI  103 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---------~~~~~  103 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++........         .....
T Consensus       106 ~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~  182 (353)
T 2b9h_A          106 TQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEF  182 (353)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhc
Confidence            35789999999999999999999999   9999999999999999999999999999876432211         11123


Q ss_pred             ecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          104 RGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       104 ~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .||+.|+|||.+.. ..++.++|+||||+++|+|++|+.||...
T Consensus       183 ~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  226 (353)
T 2b9h_A          183 VATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGR  226 (353)
T ss_dssp             CCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            57999999998764 67899999999999999999999999754

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.91  E-value=3.7e-24  Score=170.92  Aligned_cols=121  Identities=20%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             EEeCCCCcchHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-----------------
Q 042116           16 EVKGKRKQFGAVVRRRE-NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-----------------   77 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----------------   77 (208)
                      +|+.++.+...+..... ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.                 
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~  167 (289)
T 1x8b_A           91 EYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWA  167 (289)
T ss_dssp             ECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC------------------
T ss_pred             EecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccccccc
Confidence            33334444444433322 26789999999999999999999999   9999999999999984                 


Q ss_pred             --CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCC
Q 042116           78 --FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        78 --~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                        ...+||+|||.+........     ..||+.|+|||.+... .++.++||||||+++|+|++|..++.
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~~~-----~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~  232 (289)
T 1x8b_A          168 SNKVMFKIGDLGHVTRISSPQV-----EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPR  232 (289)
T ss_dssp             --CCCEEECCCTTCEETTCSCC-----CCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             CCceEEEEcccccccccCCccc-----cCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence              44799999999987644322     2389999999998765 56689999999999999999987764

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=8.1e-25  Score=180.53  Aligned_cols=111  Identities=28%  Similarity=0.319  Sum_probs=94.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++....... ......+|+.|+|
T Consensus       105 ~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~t~~y~a  180 (346)
T 1ua2_A          105 NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR-AYTHQVVTRWYRA  180 (346)
T ss_dssp             CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC-CCCCSCCCCTTCC
T ss_pred             cCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceeccCCcc-cCCcccccccccC
Confidence            335688888999999999999999999   999999999999999999999999999976543222 2233458999999


Q ss_pred             hhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+. .++.++|||||||++|+|++|..||...
T Consensus       181 PE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~  216 (346)
T 1ua2_A          181 PELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD  216 (346)
T ss_dssp             HHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             chHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            9998654 4789999999999999999999998654

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.91  E-value=6.7e-25  Score=176.01  Aligned_cols=126  Identities=19%  Similarity=0.179  Sum_probs=100.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ++..++.+...+..  ....++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++......
T Consensus       100 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  174 (291)
T 1u46_A          100 ELAPLGSLLDRLRK--HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  174 (291)
T ss_dssp             ECCTTCBHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             ecccCCCHHHHHHh--ccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccccccc
Confidence            34444444444433  235688999999999999999999999   9999999999999999999999999999876543


Q ss_pred             CCce--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRT--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....  .....++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  228 (291)
T 1u46_A          175 DDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  228 (291)
T ss_dssp             CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence            3321  123346778999999988888999999999999999999 99999754

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.91  E-value=3.2e-25  Score=190.60  Aligned_cols=120  Identities=24%  Similarity=0.332  Sum_probs=98.7

Q ss_pred             eCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCceecCC
Q 042116           18 KGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~~~~   94 (208)
                      +.++.++..+.   ....+++..+..++.|++.||.|||+.   +|+||||||+||++   +.++.+||+|||+++....
T Consensus       108 ~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  181 (484)
T 3nyv_A          108 YTGGELFDEII---SRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA  181 (484)
T ss_dssp             CCSCBHHHHHH---TCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred             CCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence            33444444443   335688999999999999999999999   99999999999999   5678899999999977644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  .....||+.|+|||.+.+ .++.++||||+||++|+|++|+.||...
T Consensus       182 ~~~--~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  230 (484)
T 3nyv_A          182 SKK--MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA  230 (484)
T ss_dssp             CCS--HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc--cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC
Confidence            332  223458999999999876 6899999999999999999999999754

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.91  E-value=1.1e-24  Score=175.57  Aligned_cols=111  Identities=23%  Similarity=0.340  Sum_probs=91.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC----ceeeeeecCCC
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT----RTFTLIRGTRG  108 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~g~~~  108 (208)
                      ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++........    .......|++.
T Consensus       115 ~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  191 (303)
T 2vwi_A          115 SGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPC  191 (303)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCcc
Confidence            45689999999999999999999999   999999999999999999999999999876533211    11223458999


Q ss_pred             cCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||.+.. ..++.++|+||||+++|+|++|+.||...
T Consensus       192 y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  230 (303)
T 2vwi_A          192 WMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKY  230 (303)
T ss_dssp             TCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccC
Confidence            999999865 56889999999999999999999999754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.91  E-value=6.2e-24  Score=172.40  Aligned_cols=120  Identities=25%  Similarity=0.286  Sum_probs=101.0

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +++..+.. .....++...+..++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++........ ...
T Consensus       109 ~~L~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~  183 (314)
T 3com_A          109 GSVSDIIR-LRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRN  183 (314)
T ss_dssp             EEHHHHHH-HHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS-CBC
T ss_pred             CCHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc-ccC
Confidence            34554443 2456789999999999999999999999   999999999999999999999999999977543222 122


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       184 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          184 TVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             CCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            345899999999999888999999999999999999999999643

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.91  E-value=7.2e-25  Score=174.97  Aligned_cols=121  Identities=23%  Similarity=0.378  Sum_probs=96.9

Q ss_pred             CcchHHHHhh--hccCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           22 KQFGAVVRRR--ENKEKESNLGLLLILPQPSCNVYLHNECEAP-----IIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        22 ~~~~~l~~~~--~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-----iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      +++..+....  ....+++..++.++.|++.||.|||+.   +     |+||||||+||+++.++.+||+|||+++....
T Consensus        92 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~  168 (279)
T 2w5a_A           92 GDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH  168 (279)
T ss_dssp             EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCCHHHHC--
T ss_pred             CCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCchheeecc
Confidence            3444444432  234589999999999999999999998   6     99999999999999999999999999876533


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......|+..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       169 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  219 (279)
T 2w5a_A          169 DTS-FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF  219 (279)
T ss_dssp             -CH-HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc-cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc
Confidence            221 112234899999999999888999999999999999999999999744

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.91  E-value=2.5e-25  Score=178.50  Aligned_cols=120  Identities=17%  Similarity=0.266  Sum_probs=95.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc--------EEEEec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT--------AKISDF   86 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--------~kl~df   86 (208)
                      .+|+.++ ++..+... ....++...++.++.|++.||.|||+.   +|+||||||+||+++.++.        +||+||
T Consensus        91 ~e~~~~~-~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Df  165 (289)
T 4fvq_A           91 QEFVKFG-SLDTYLKK-NKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDP  165 (289)
T ss_dssp             EECCTTC-BHHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCC
T ss_pred             EECCCCC-CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeeeccC
Confidence            3444444 44444433 234488999999999999999999999   9999999999999988877        999999


Q ss_pred             CCceecCCCCCceeeeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           87 GLAKLLMPDQTRTFTLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        87 g~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      |++......     ....++..|+|||.+.+ ..++.++||||||+++|+|++|..|+.
T Consensus       166 g~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~  219 (289)
T 4fvq_A          166 GISITVLPK-----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPL  219 (289)
T ss_dssp             CSCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             cccccccCc-----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCc
Confidence            998654221     12347889999999987 668999999999999999999665554

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.91  E-value=1.5e-24  Score=175.30  Aligned_cols=110  Identities=27%  Similarity=0.319  Sum_probs=96.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++........ ......|++.|+||
T Consensus       113 ~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~y~aP  188 (303)
T 3a7i_A          113 PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI-KRNTFVGTPFWMAP  188 (303)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC-CBCCCCSCGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcccc-ccCccCCCcCccCH
Confidence            45789999999999999999999999   999999999999999999999999999987643221 12334589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       189 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  222 (303)
T 3a7i_A          189 EVIKQSAYDSKADIWSLGITAIELARGEPPHSEL  222 (303)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc
Confidence            9999888999999999999999999999998643

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.91  E-value=1.4e-24  Score=174.16  Aligned_cols=110  Identities=24%  Similarity=0.427  Sum_probs=85.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.|++.||.|||+.+  +|+||||||+||+++.++.+||+|||+++.......  .....||+.|+|
T Consensus       102 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~t~~y~a  177 (290)
T 3fme_A          102 KGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA--KDIDAGCKPYMA  177 (290)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-----------------CCCCCCSC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCccccccccc--ccccCCCccccC
Confidence            4567899999999999999999999842  899999999999999999999999999976543222  222358999999


Q ss_pred             hhhh----hcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          112 PEWS----KNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       112 PE~~----~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ||.+    ....++.++|+||+|+++|+|++|+.||..
T Consensus       178 PE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  215 (290)
T 3fme_A          178 PERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS  215 (290)
T ss_dssp             HHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             hhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence            9996    456688999999999999999999999964

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.91  E-value=5.1e-25  Score=191.89  Aligned_cols=122  Identities=20%  Similarity=0.261  Sum_probs=99.9

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+..++.......+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++...........
T Consensus       346 gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~  422 (535)
T 2h8h_A          346 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ  422 (535)
T ss_dssp             EEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTC
T ss_pred             CcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceeccc
Confidence            3455555444556789999999999999999999999   9999999999999999999999999999765322111112


Q ss_pred             eeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ...++..|+|||.+....++.++||||||+++|||++ |+.||...
T Consensus       423 ~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~  468 (535)
T 2h8h_A          423 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  468 (535)
T ss_dssp             STTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTC
T ss_pred             CCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            2235678999999998899999999999999999999 89998643

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.91  E-value=4.3e-24  Score=177.91  Aligned_cols=107  Identities=24%  Similarity=0.313  Sum_probs=91.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....    .....||+.|+||
T Consensus       138 ~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~----~~~~~~t~~y~aP  210 (371)
T 4exu_A          138 GMEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADAE----MTGYVVTRWYRAP  210 (371)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC------------CTTCCCTTSCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccccccC----cCCcccCccccCH
Confidence            34589999999999999999999999   9999999999999999999999999999765322    2234579999999


Q ss_pred             hhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+ ..++.++||||||+++|+|++|+.||...
T Consensus       211 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  245 (371)
T 4exu_A          211 EVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  245 (371)
T ss_dssp             HHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99876 67899999999999999999999999754

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.91  E-value=2.1e-25  Score=184.73  Aligned_cols=119  Identities=24%  Similarity=0.393  Sum_probs=97.5

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+...  ...++...+..++.|++.||.|||+.+  +|+||||||+||+++.++.+||+|||++......   ..
T Consensus       115 ~~~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~  187 (360)
T 3eqc_A          115 GGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MA  187 (360)
T ss_dssp             TCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---C-
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc---cc
Confidence            3455554433  346889999999999999999999831  7999999999999999999999999998654221   12


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          188 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             ---CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             cCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            2345899999999999989999999999999999999999999754

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.91  E-value=1.4e-24  Score=175.68  Aligned_cols=107  Identities=30%  Similarity=0.442  Sum_probs=93.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEE---cCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||++   +.++.++|+|||++.......   .....|++.|+
T Consensus       101 ~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~y~  174 (304)
T 2jam_A          101 GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI---MSTACGTPGYV  174 (304)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBT---THHHHSCCCBC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCc---cccccCCCCcc
Confidence            4688999999999999999999999   99999999999999   778899999999987543221   12234899999


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       175 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  210 (304)
T 2jam_A          175 APEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE  210 (304)
T ss_dssp             CTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            999999888999999999999999999999999644

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.91  E-value=1.2e-24  Score=172.49  Aligned_cols=116  Identities=18%  Similarity=0.195  Sum_probs=96.0

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAP--IIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      +++..+........+++..++.++.|++.||.|||+.   +  ++||||||+||+++.++.++++||+++......    
T Consensus        94 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~----  166 (271)
T 3kmu_A           94 GSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSP----  166 (271)
T ss_dssp             CBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCT----
T ss_pred             CcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeeccc----
Confidence            4555555555555689999999999999999999998   7  999999999999999999999998886543221    


Q ss_pred             eeeeecCCCcCchhhhhcCCCCc---cccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISM---KANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~---~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                        ...+|+.|+|||.+.+..++.   ++||||||+++|+|++|+.||...
T Consensus       167 --~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  214 (271)
T 3kmu_A          167 --GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL  214 (271)
T ss_dssp             --TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS
T ss_pred             --CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence              124789999999998765544   799999999999999999999744

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.91  E-value=7.5e-24  Score=170.56  Aligned_cols=117  Identities=21%  Similarity=0.341  Sum_probs=97.6

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+......  ...++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++........  ...
T Consensus       110 ~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~  182 (298)
T 1phk_A          110 ELFDYLTE--KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK--LRE  182 (298)
T ss_dssp             BHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC--BCC
T ss_pred             cHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecccchhhcCCCcc--ccc
Confidence            44444432  35789999999999999999999999   999999999999999999999999999987644322  233


Q ss_pred             eecCCCcCchhhhh------cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSK------NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~------~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..+++.|+|||.+.      ...++.++|+||||+++|+|++|+.||...
T Consensus       183 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  232 (298)
T 1phk_A          183 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR  232 (298)
T ss_dssp             CCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc
Confidence            45899999999885      445788999999999999999999999643

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.91  E-value=8.7e-24  Score=174.95  Aligned_cols=110  Identities=21%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.......  .....+|+.|+|
T Consensus       127 ~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~t~~y~a  201 (362)
T 3pg1_A          127 QRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITICDFNLAREDTADAN--KTHYVTHRWYRA  201 (362)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCTTC-----------------CGGGCC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCCCEEEEecCcccccccccc--cceecccceecC
Confidence            345689999999999999999999999   999999999999999999999999999975433222  233458899999


Q ss_pred             hhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.+ ..++.++|+||+||++|+|++|+.||...
T Consensus       202 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  237 (362)
T 3pg1_A          202 PELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS  237 (362)
T ss_dssp             HHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC
Confidence            999876 66899999999999999999999999754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.90  E-value=2.4e-24  Score=174.71  Aligned_cols=112  Identities=21%  Similarity=0.326  Sum_probs=92.2

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCC--ceeeeeecCCC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRG  108 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~--~~~~~~~g~~~  108 (208)
                      ....++...++.++.|++.||+|||+.   +|+||||||+||+++ .++.+||+|||+++.......  .......++..
T Consensus       113 ~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
T 2i6l_A          113 EQGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKW  189 (320)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCT
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEccCccccccCCCccccccccccccccc
Confidence            446788999999999999999999999   999999999999997 567899999999986533211  11122346889


Q ss_pred             cCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||.+.. ..++.++|+||||+++|+|++|+.||...
T Consensus       190 y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  228 (320)
T 2i6l_A          190 YRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA  228 (320)
T ss_dssp             TCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC
Confidence            999998865 67899999999999999999999999754

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.90  E-value=5.5e-24  Score=172.71  Aligned_cols=118  Identities=25%  Similarity=0.363  Sum_probs=89.9

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      .+..+.. .....++...+..++.|++.||.|||+ .   +++||||||+||+++.++.+||+|||++........  ..
T Consensus       109 ~~~~l~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~  182 (318)
T 2dyl_A          109 CAEKLKK-RMQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA--KD  182 (318)
T ss_dssp             EHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC------------
T ss_pred             cHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc--cc
Confidence            4444443 345678999999999999999999998 5   899999999999999999999999999876533222  22


Q ss_pred             eeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...+++.|+|||.+.     ...++.++||||||+++|+|++|+.||...
T Consensus       183 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (318)
T 2dyl_A          183 RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC  232 (318)
T ss_dssp             ----CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCC
Confidence            345899999999984     456788999999999999999999999753

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.90  E-value=6.8e-24  Score=174.47  Aligned_cols=109  Identities=27%  Similarity=0.381  Sum_probs=95.6

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ....+++..+..++.|++.||.|||+ .   +++||||||+||+++.++.+||+|||.+......   ......|+..|+
T Consensus       144 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~  217 (348)
T 2pml_X          144 YTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFM  217 (348)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEECTTSCEEECCCTTCEECBTT---EECSSCSCGGGC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEEcCCCcEEEeccccccccccc---cccCCCCCcCcc
Confidence            35788999999999999999999998 7   9999999999999999999999999999875332   223345899999


Q ss_pred             chhhhhcC-CCCc-cccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISM-KANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~-~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+. .++. ++|+||||+++|+|++|+.||...
T Consensus       218 aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  255 (348)
T 2pml_X          218 PPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLK  255 (348)
T ss_dssp             CGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999876 5665 999999999999999999999755

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.90  E-value=3.7e-24  Score=181.99  Aligned_cols=104  Identities=31%  Similarity=0.422  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC-------------CcEEEEecCCceecCCCCCc---eeeee
Q 042116           40 LGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF-------------WTAKISDFGLAKLLMPDQTR---TFTLI  103 (208)
Q Consensus        40 ~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-------------~~~kl~dfg~~~~~~~~~~~---~~~~~  103 (208)
                      .++.++.|++.||+|||+.   +|+||||||+||+++.+             +.+||+|||+++........   .....
T Consensus       116 ~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~  192 (434)
T 2rio_A          116 NPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNP  192 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC------------
T ss_pred             hHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCC
Confidence            3467999999999999999   99999999999999654             47999999999876543321   12234


Q ss_pred             ecCCCcCchhhhhc-------CCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          104 RGTRGYMAPEWSKN-------TPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       104 ~g~~~y~aPE~~~~-------~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .||+.|+|||++.+       ..++.++|||||||++|+|++ |+.||...
T Consensus       193 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~  243 (434)
T 2rio_A          193 SGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDK  243 (434)
T ss_dssp             --CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCST
T ss_pred             CCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCc
Confidence            68999999999865       568899999999999999999 99999644

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.90  E-value=9e-24  Score=171.58  Aligned_cols=120  Identities=25%  Similarity=0.351  Sum_probs=92.4

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-e
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-T   99 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~   99 (208)
                      ++.+..+...  ...++...+..++.|++.||.|||+.   +|+||||||+||+++. +.+||+|||+++........ .
T Consensus       111 ~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~  184 (313)
T 3cek_A          111 NIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVV  184 (313)
T ss_dssp             SEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC---------
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccCcccccc
Confidence            3455555443  35788999999999999999999999   9999999999999965 78999999999765433221 1


Q ss_pred             eeeeecCCCcCchhhhhc-----------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKN-----------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~-----------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....|++.|+|||.+.+           ..++.++||||||+++|+|++|+.||...
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (313)
T 3cek_A          185 KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  242 (313)
T ss_dssp             -----CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhH
Confidence            223458999999999865           46788999999999999999999999643

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=175.61  Aligned_cols=117  Identities=26%  Similarity=0.406  Sum_probs=97.5

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecCCCCCce
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRT   99 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~~~~~~~   99 (208)
                      ++.+......  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++ .++.+||+|||+++......   
T Consensus       123 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~---  194 (312)
T 2iwi_A          123 AQDLFDYITE--KGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEP---  194 (312)
T ss_dssp             EEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSC---
T ss_pred             CCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCc---
Confidence            4455544443  34689999999999999999999999   999999999999998 78999999999998764432   


Q ss_pred             eeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      .....|+..|+|||++....+ +.++||||||+++|+|++|+.||..
T Consensus       195 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  241 (312)
T 2iwi_A          195 YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER  241 (312)
T ss_dssp             BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCC
Confidence            223458999999999877666 4589999999999999999999863

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.90  E-value=8.2e-25  Score=178.88  Aligned_cols=123  Identities=22%  Similarity=0.208  Sum_probs=96.6

Q ss_pred             CCcchHHHHhhhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceec
Q 042116           21 RKQFGAVVRRREN-----KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLL   92 (208)
Q Consensus        21 ~~~~~~l~~~~~~-----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~   92 (208)
                      ++.+..+......     ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.   +..+||+|||+++..
T Consensus       117 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~  193 (327)
T 2yfx_A          117 GGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI  193 (327)
T ss_dssp             TEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHH
T ss_pred             CCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEECcccccccc
Confidence            3445554444322     4588999999999999999999999   9999999999999984   456999999998754


Q ss_pred             CCCCC-ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           93 MPDQT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        93 ~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ..... .......+++.|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       194 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  249 (327)
T 2yfx_A          194 YRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK  249 (327)
T ss_dssp             HC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc
Confidence            32221 11222347889999999988889999999999999999998 99998644

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.90  E-value=2.3e-24  Score=175.10  Aligned_cols=128  Identities=20%  Similarity=0.234  Sum_probs=99.4

Q ss_pred             eEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      .+|+.++.+...+.... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||.+....
T Consensus       109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC  185 (317)
T ss_dssp             EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence            34444444444443322 346789999999999999999999999   99999999999999999999999999987643


Q ss_pred             CCCCc--------eeeeeecCCCcCchhhhhcCC---CCccccchhHHHHHHHHHhcCcCCCC
Q 042116           94 PDQTR--------TFTLIRGTRGYMAPEWSKNTP---ISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus        94 ~~~~~--------~~~~~~g~~~y~aPE~~~~~~---~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      .....        ......|++.|+|||.+....   ++.++||||||+++|+|++|+.||..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  248 (317)
T 2buj_A          186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM  248 (317)
T ss_dssp             EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHH
T ss_pred             cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhh
Confidence            21100        001223689999999987543   68899999999999999999999853

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=171.00  Aligned_cols=119  Identities=24%  Similarity=0.285  Sum_probs=98.6

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce--
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT--   99 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~--   99 (208)
                      +++..+... ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.........  
T Consensus       129 ~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~  204 (326)
T 2w1i_A          129 GSLRDYLQK-HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKV  204 (326)
T ss_dssp             CBHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEEC
T ss_pred             CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhhcccccccccc
Confidence            355544443 234689999999999999999999998   99999999999999999999999999998765433221  


Q ss_pred             eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116          100 FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       100 ~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      .....++..|+|||.+.+..++.++||||||+++|+|++|+.|+.
T Consensus       205 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~  249 (326)
T 2w1i_A          205 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK  249 (326)
T ss_dssp             SSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             ccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCC
Confidence            112336777999999988888999999999999999999998875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.90  E-value=1.1e-24  Score=177.07  Aligned_cols=120  Identities=24%  Similarity=0.303  Sum_probs=91.8

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC----C
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ----T   97 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~----~   97 (208)
                      +++..+... ....+++..++.++.|++.||.|||+.   +++||||||+||+++ ++.+||+|||+++......    .
T Consensus       114 ~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~  188 (319)
T 2y4i_B          114 RTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRE  188 (319)
T ss_dssp             EEHHHHTTS-SCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC----------C
T ss_pred             CcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCccccccccccccc
Confidence            344444422 234688999999999999999999999   999999999999998 6789999999986542211    1


Q ss_pred             ceeeeeecCCCcCchhhhhc---------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKN---------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~---------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .......|++.|+|||.+..         ..++.++||||||+++|+|++|+.||...
T Consensus       189 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  246 (319)
T 2y4i_B          189 DKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ  246 (319)
T ss_dssp             CSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSC
T ss_pred             cccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            11223348899999999864         34788999999999999999999999754

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.90  E-value=1.3e-23  Score=167.46  Aligned_cols=118  Identities=24%  Similarity=0.403  Sum_probs=90.4

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceee
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT  101 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  101 (208)
                      +.+......  ...++...+..++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++........  ..
T Consensus        96 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~  168 (276)
T 2h6d_A           96 GELFDYICK--HGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--LR  168 (276)
T ss_dssp             CBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------
T ss_pred             CcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCcc--ee
Confidence            344444432  24688999999999999999999999   999999999999999999999999999876543221  22


Q ss_pred             eeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116          102 LIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       102 ~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...+++.|+|||.+.+..+ +.++|+||||+++|+|++|+.||...
T Consensus       169 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  214 (276)
T 2h6d_A          169 TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE  214 (276)
T ss_dssp             --------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            3458899999999987665 68999999999999999999999643

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.89  E-value=5.8e-24  Score=173.72  Aligned_cols=110  Identities=28%  Similarity=0.351  Sum_probs=77.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+..++.|++.||.|||+..  +|+||||||+||+++.++.+||+|||+++.......  .....|++.|+||
T Consensus       119 ~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~gt~~y~aP  194 (327)
T 3aln_A          119 DDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA--KTRDAGCRPYMAP  194 (327)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC---------------------
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecccccc--cccCCCCccccCc
Confidence            567899999999999999999999842  899999999999999999999999999976533221  2223589999999


Q ss_pred             hhh----hcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWS----KNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~----~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+    ....++.++||||||+++|+|++|+.||...
T Consensus       195 E~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (327)
T 3aln_A          195 ERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKW  232 (327)
T ss_dssp             -----------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred             eeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            998    4566889999999999999999999999753

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.89  E-value=9.9e-24  Score=179.36  Aligned_cols=120  Identities=27%  Similarity=0.376  Sum_probs=87.7

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-----CCcEEEEecCCceecCCCCC
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-----FWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----~~~~kl~dfg~~~~~~~~~~   97 (208)
                      .+........ .......++.++.|++.||.|||+.   +|+||||||+||+++.     ...+||+|||+++.......
T Consensus       103 ~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~  178 (432)
T 3p23_A          103 TLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH  178 (432)
T ss_dssp             EHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-----
T ss_pred             CHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCc
Confidence            4444444332 2333445568999999999999999   9999999999999943     34588999999987643322


Q ss_pred             --ceeeeeecCCCcCchhhhh---cCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           98 --RTFTLIRGTRGYMAPEWSK---NTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        98 --~~~~~~~g~~~y~aPE~~~---~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                        .......||+.|+|||++.   ...++.++|||||||++|+|++ |..||...
T Consensus       179 ~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~  233 (432)
T 3p23_A          179 SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKS  233 (432)
T ss_dssp             -------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBST
T ss_pred             ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchh
Confidence              1223456999999999987   4567889999999999999999 89998643

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.89  E-value=4.1e-24  Score=172.39  Aligned_cols=121  Identities=22%  Similarity=0.289  Sum_probs=95.3

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+... ....++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...... ....
T Consensus       100 ~~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~  174 (302)
T 2j7t_A          100 GGAVDAIMLE-LDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-LQKR  174 (302)
T ss_dssp             TEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-HHC-
T ss_pred             CCcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc-cccc
Confidence            3344444432 345689999999999999999999999   9999999999999999999999999987532111 0111


Q ss_pred             eeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....|+..|+|||.+.     ...++.++|+||||+++|+|++|+.||...
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  225 (302)
T 2j7t_A          175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  225 (302)
T ss_dssp             ----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC
Confidence            2335899999999883     567889999999999999999999999754

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.89  E-value=1.9e-23  Score=172.62  Aligned_cols=106  Identities=24%  Similarity=0.305  Sum_probs=91.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..++...+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....    .....+|+.|+|||
T Consensus       121 ~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~----~~~~~~t~~y~aPE  193 (353)
T 3coi_A          121 LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADAE----MTGYVVTRWYRAPE  193 (353)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC------------CCSBCCSCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCCCC----ccccccCcCcCCHH
Confidence            3588999999999999999999999   9999999999999999999999999998764322    22345899999999


Q ss_pred             hhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          114 WSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       114 ~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       194 ~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  227 (353)
T 3coi_A          194 VILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  227 (353)
T ss_dssp             HHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSS
T ss_pred             HHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9876 67899999999999999999999999754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.89  E-value=2.7e-23  Score=185.63  Aligned_cols=101  Identities=22%  Similarity=0.342  Sum_probs=90.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhh
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW  114 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~  114 (208)
                      .+++..++.++.|++.||.|||+.   +|+||||||+||+++.+ .+||+|||+++.....     ....||+.|+|||+
T Consensus       178 ~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~-----~~~~gt~~y~aPE~  248 (681)
T 2pzi_A          178 KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF-----GYLYGTPGFQAPEI  248 (681)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETTCC-----SCCCCCTTTSCTTH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhcccC-----CccCCCccccCHHH
Confidence            789999999999999999999999   99999999999999886 8999999999876433     23358999999999


Q ss_pred             hhcCCCCccccchhHHHHHHHHHhcCcCCCC
Q 042116          115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       115 ~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      +.+.. +.++|||||||++|+|++|..|+..
T Consensus       249 ~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~  278 (681)
T 2pzi_A          249 VRTGP-TVATDIYTVGRTLAALTLDLPTRNG  278 (681)
T ss_dssp             HHHCS-CHHHHHHHHHHHHHHHHSCCCEETT
T ss_pred             HcCCC-CCceehhhhHHHHHHHHhCCCCCcc
Confidence            87764 8899999999999999999988764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.89  E-value=1.5e-23  Score=185.90  Aligned_cols=128  Identities=24%  Similarity=0.255  Sum_probs=103.6

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc---EEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT---AKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~dfg~~~   90 (208)
                      ..+|+.++.+...+........+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.   +||+|||++.
T Consensus        96 VmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~  172 (676)
T 3qa8_A           96 AMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAK  172 (676)
T ss_dssp             EEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCCCCC
T ss_pred             EEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEccccccc
Confidence            445555554444443333445688999999999999999999998   9999999999999986654   8999999998


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .......  .....|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       173 ~~~~~~~--~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~  226 (676)
T 3qa8_A          173 ELDQGEL--CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN  226 (676)
T ss_dssp             BTTSCCC--CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccccccc--cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcc
Confidence            7643322  23345899999999999889999999999999999999999999643

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.89  E-value=1.5e-23  Score=168.53  Aligned_cols=113  Identities=29%  Similarity=0.437  Sum_probs=87.3

Q ss_pred             CcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCC-----
Q 042116           22 KQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-----   96 (208)
Q Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~-----   96 (208)
                      +++..+... ....++...++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.......     
T Consensus       100 ~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  175 (303)
T 1zy4_A          100 GTLYDLIHS-ENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKL  175 (303)
T ss_dssp             CBHHHHHHH-SCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------
T ss_pred             CCHHHhhhc-cccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhcc
Confidence            345444443 345677888899999999999999999   99999999999999999999999999987653221     


Q ss_pred             --------CceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHh
Q 042116           97 --------TRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVC  138 (208)
Q Consensus        97 --------~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~t  138 (208)
                              ........|++.|+|||.+.+. .++.++|+||||+++|+|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          176 DSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             ------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh
Confidence                    1112234589999999998754 68999999999999999998

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.88  E-value=7.1e-23  Score=164.35  Aligned_cols=107  Identities=28%  Similarity=0.376  Sum_probs=90.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC---CcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF---WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      ..++...++.++.|++.||.|||+.   +++||||||+||+++.+   +.+||+|||++........  .....+++.|+
T Consensus       116 ~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~y~  190 (287)
T 2wei_A          116 KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK--MKDRIGTAYYI  190 (287)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSS--CSCHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCc--cccccCccccc
Confidence            4689999999999999999999999   99999999999999654   4699999999876543222  12234788999


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+ .++.++|+||||+++|+|++|+.||...
T Consensus       191 aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (287)
T 2wei_A          191 APEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (287)
T ss_dssp             CHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence            9999875 4889999999999999999999999744

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.88  E-value=2.1e-23  Score=171.15  Aligned_cols=117  Identities=9%  Similarity=-0.018  Sum_probs=97.3

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEeCCCCCcEEEcCCC-------------
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLH-NECEAPIIHCDIKPHNILMDEFW-------------   79 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH-~~~~~~iiHrdlk~~nill~~~~-------------   79 (208)
                      ..||+.++.++..+..    ..++...++.++.|++.||.||| +.   +|+||||||+|||++.++             
T Consensus       140 v~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~  212 (336)
T 2vuw_A          140 VLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSS  212 (336)
T ss_dssp             EEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEE
T ss_pred             EEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccc
Confidence            3455667767776532    56799999999999999999999 88   999999999999999887             


Q ss_pred             -------cEEEEecCCceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHH-HHHHHhcCcCCC
Q 042116           80 -------TAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVV-LLEIVCCRRNME  144 (208)
Q Consensus        80 -------~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~-l~el~tg~~p~~  144 (208)
                             .+||+|||+++.....      ...||+.|+|||++.+.. +.++||||++++ .+++++|..||.
T Consensus       213 ~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~  278 (336)
T 2vuw_A          213 TIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS  278 (336)
T ss_dssp             EEECTTEEEEECCCTTCBEEETT------EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred             cccCCCceEEEeeccccEecCCC------cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence                   8999999999876332      235899999999998765 889999998776 777888888874

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.86  E-value=1.2e-21  Score=158.17  Aligned_cols=100  Identities=20%  Similarity=0.314  Sum_probs=84.7

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceecCCCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLLMPDQT   97 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~~~~~~   97 (208)
                      ++++...........+++..++.++.|++.||.|||+.   +|+||||||+||+++.   ++.+||+|||++.....   
T Consensus        99 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~---  172 (299)
T 3m2w_A           99 GGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG---  172 (299)
T ss_dssp             SCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT---
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecccccccccc---
Confidence            34555555555556799999999999999999999999   9999999999999998   78899999999865421   


Q ss_pred             ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           98 RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        98 ~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                                          ..++.++|+||||+++|+|++|+.||...
T Consensus       173 --------------------~~~~~~~DiwslG~il~el~tg~~pf~~~  201 (299)
T 3m2w_A          173 --------------------EKYDKSCDMWSLGVIMYILLCGYPPFYSN  201 (299)
T ss_dssp             --------------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC-
T ss_pred             --------------------ccCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                                23678899999999999999999999654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.84  E-value=7.9e-23  Score=179.25  Aligned_cols=115  Identities=16%  Similarity=0.055  Sum_probs=72.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      -||+.++.+. +++.+  ...++..   +|+.||+.||+|+|++   |||||||||+|||++.++.+||+|||+++....
T Consensus       321 MEyv~G~~L~-d~i~~--~~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~  391 (569)
T 4azs_A          321 MEKLPGRLLS-DMLAA--GEEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ  391 (569)
T ss_dssp             EECCCSEEHH-HHHHT--TCCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred             EecCCCCcHH-HHHHh--CCCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence            3445444444 44443  2445554   5899999999999999   999999999999999999999999999987644


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCR  140 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~  140 (208)
                      .... ....+||+.|+|||++.+. +..++|+||+|++++++.++.
T Consensus       392 ~~~~-~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~  435 (569)
T 4azs_A          392 DCSW-PTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPW  435 (569)
T ss_dssp             --CC-SHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred             CCcc-ccCceechhhccHHHhCCC-CCCcccccccccchhhhcccc
Confidence            3222 2335699999999999764 567899999999877665543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.81  E-value=3.4e-20  Score=149.28  Aligned_cols=92  Identities=8%  Similarity=0.001  Sum_probs=75.1

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++++..+...    ......+.+++.|++.||.|||+.   +|+||||||+||+++.++.+||++++             
T Consensus       115 g~~L~~~l~~----~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------------  174 (286)
T 3uqc_A          115 GGSLQEVADT----SPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------------  174 (286)
T ss_dssp             EEEHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC-------------
T ss_pred             CCCHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc-------------
Confidence            3455555432    235556788999999999999999   99999999999999999999987433             


Q ss_pred             eeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDP  147 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~  147 (208)
                              |++       +++.++||||||+++|+|++|+.||....
T Consensus       175 --------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~  206 (286)
T 3uqc_A          175 --------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAG  206 (286)
T ss_dssp             --------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCS
T ss_pred             --------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence                    232       36889999999999999999999998653

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.64  E-value=1.1e-17  Score=145.85  Aligned_cols=98  Identities=20%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCce------eeeeecCCCcCchhh
Q 042116           41 GLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRT------FTLIRGTRGYMAPEW  114 (208)
Q Consensus        41 ~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~------~~~~~g~~~y~aPE~  114 (208)
                      ++.++.|++.||.|||+.   +|+||||||+|||++.  .+||+|||+++.........      .....||+.|+|||+
T Consensus       433 ~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv  507 (540)
T 3en9_A          433 NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEI  507 (540)
T ss_dssp             CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHH
Confidence            568999999999999999   9999999999999998  99999999998874432211      124468999999999


Q ss_pred             hhc--CCCCccccchhHHHHHHHHHhcCcCC
Q 042116          115 SKN--TPISMKANVFNYGVVLLEIVCCRRNM  143 (208)
Q Consensus       115 ~~~--~~~~~~~Di~s~Gv~l~el~tg~~p~  143 (208)
                      +..  ..|+..+|+||..+-..+.+.++.++
T Consensus       508 ~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          508 WERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            976  55778889999999888888887765

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.37  E-value=3.7e-13  Score=108.05  Aligned_cols=58  Identities=16%  Similarity=-0.056  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhhh
Q 042116           41 GLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSK  116 (208)
Q Consensus        41 ~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  116 (208)
                      ...++.|++.||.|||+.   +|+||||||+||+++ ++.+||+|||+++.              +..+.|||++.
T Consensus       195 ~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~DFG~a~~--------------~~~~~a~e~l~  252 (282)
T 1zar_A          195 PDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWIIDFPQSVE--------------VGEEGWREILE  252 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEECCCTTCEE--------------TTSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEEECCCCeE--------------CCCCCHHHHHH
Confidence            347999999999999999   999999999999999 99999999999864              23467888774

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.10  E-value=1.2e-10  Score=91.98  Aligned_cols=50  Identities=18%  Similarity=0.089  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-hCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           38 SNLGLLLILPQPSCNVYLH-NECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        38 ~~~~~~i~~~i~~~l~ylH-~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      ...+..++.|++.||.||| +.   +|+||||||+|||++.  .++|+|||++...
T Consensus       169 ~~~~~~i~~qi~~~l~~lH~~~---givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          169 ELDVEGIFNDVVENVKRLYQEA---ELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTS---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            3456689999999999999 87   9999999999999988  8999999999764

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.53  E-value=7.2e-08  Score=80.45  Aligned_cols=49  Identities=24%  Similarity=0.167  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC----------cEEEEecCCceec
Q 042116           41 GLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW----------TAKISDFGLAKLL   92 (208)
Q Consensus        41 ~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----------~~kl~dfg~~~~~   92 (208)
                      ...++.|++.+|.|||+.   +||||||||.|||++.++          .+.|+||+-+...
T Consensus       207 ~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          207 PASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccC
Confidence            347889999999999998   999999999999998766          3789999977653

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.81  E-value=7.4e-06  Score=65.66  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             CCeEEeCCCCCcEEEcC--CCcEEEEecCCceecCCCCCceeeeeecCCCcCchhhh----hcCC----------CCccc
Q 042116           61 APIIHCDIKPHNILMDE--FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS----KNTP----------ISMKA  124 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE~~----~~~~----------~~~~~  124 (208)
                      +.++|+|+++.||+++.  ...+.++||+.+....+....... . ....-..|+..    ....          .....
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~-~-~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~  268 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISL-M-EDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKE  268 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTT-C-CTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHH-H-hhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            46899999999999988  556789999988764221110000 0 00000122211    1110          01225


Q ss_pred             cchhHHHHHHHHHhcCcCCC
Q 042116          125 NVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus       125 Di~s~Gv~l~el~tg~~p~~  144 (208)
                      +.|+++.++|.+.+|..++.
T Consensus       269 ~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          269 KYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHH
Confidence            78999999999999987763

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.53  E-value=8e-05  Score=57.57  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=25.3

Q ss_pred             eEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           63 IIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        63 iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ++|+|++|.||+++.+....|+||+.+..
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhccc
Confidence            99999999999998776677999998754

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.36  E-value=0.00017  Score=56.20  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=25.6

Q ss_pred             CCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..++|+|+++.||+++.+....|+||+.+..
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence            3589999999999998765567999987643

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.33  E-value=0.00036  Score=57.00  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC-------------------------------------------------------
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNEC-------------------------------------------------------   59 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~-------------------------------------------------------   59 (208)
                      .++...+..++.+++..|+.||+..                                                       
T Consensus       135 ~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  214 (359)
T 3dxp_A          135 GMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDAD  214 (359)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCC
Confidence            3567777889999999999999731                                                       


Q ss_pred             CCCeEEeCCCCCcEEEcCCCc--EEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWT--AKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~--~kl~dfg~~~~   91 (208)
                      ...++|+|+++.||+++.++.  +.|+||+.+..
T Consensus       215 ~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          215 LTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            247999999999999987653  68999998865

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.13  E-value=0.0058  Score=48.98  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +..++|+|+++.||+++.++.+.++||+.+..
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            45899999999999998778899999998754

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=95.46  E-value=0.034  Score=44.26  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=26.1

Q ss_pred             CCCeEEeCCCCCcEEEcC---CCc-EEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDE---FWT-AKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~---~~~-~kl~dfg~~~~   91 (208)
                      ++.++|+|+++.||+++.   ++. ..|+||+.+..
T Consensus       189 ~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          189 TPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             CCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             CCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            446899999999999987   345 58999998765

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=94.39  E-value=0.049  Score=45.35  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=27.6

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCceec
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLL   92 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~   92 (208)
                      .+.++|+|+++.||+++.++ ++++||+.+..-
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            44899999999999998776 999999988653

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=93.85  E-value=0.1  Score=41.72  Aligned_cols=33  Identities=27%  Similarity=0.259  Sum_probs=28.0

Q ss_pred             CCCeEEeCCCCCcEEEcCC----CcEEEEecCCceec
Q 042116           60 EAPIIHCDIKPHNILMDEF----WTAKISDFGLAKLL   92 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~----~~~kl~dfg~~~~~   92 (208)
                      +..++|+|+.+.||+++.+    ..+.++||+.+..-
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            4589999999999999874    67899999988653

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=93.63  E-value=0.024  Score=45.14  Aligned_cols=32  Identities=25%  Similarity=0.223  Sum_probs=26.7

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.+++|+|+.+.||+++.+....++||+.+..
T Consensus       186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            34799999999999998876568999987754

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=93.56  E-value=0.032  Score=43.20  Aligned_cols=30  Identities=23%  Similarity=0.270  Sum_probs=25.9

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .++|+|+.+.||+++.++..-|+||+.+..
T Consensus       194 ~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence            489999999999999877778999987754

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=92.93  E-value=0.039  Score=44.62  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=26.5

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ++.++|+|+.+.||+++.+..+.|+||..+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            34799999999999999644578999988754

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=92.43  E-value=0.15  Score=40.48  Aligned_cols=30  Identities=23%  Similarity=0.156  Sum_probs=25.4

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +..++|+|+++.||+++ + .+.++||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            34789999999999998 4 889999987654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=90.04  E-value=0.14  Score=41.65  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=24.7

Q ss_pred             CCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..++|+|+.+.||+++.+. +.++||..+..
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~  241 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF  241 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence            4689999999999998654 89999987754

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=89.63  E-value=0.13  Score=41.59  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             CCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           61 APIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        61 ~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ..++|+|+.+.||+++.++.+.++||..+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            4799999999999998877899999987754

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=89.30  E-value=0.23  Score=40.77  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=26.0

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      ...++|+|+.+.||+++.+ .++++||..+..
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~  256 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  256 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence            3489999999999999876 488999987764

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=89.23  E-value=1.1  Score=34.08  Aligned_cols=102  Identities=8%  Similarity=0.006  Sum_probs=61.4

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      ++.+++. ..+..++...++.++.|.+.+|.-+-.... . ..+=..|..|++..+|.+...+ ..+.      .     
T Consensus        34 SL~eIL~-~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------~-----   98 (229)
T 2yle_A           34 SLEEILR-LYNQPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD------A-----   98 (229)
T ss_dssp             EHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred             cHHHHHH-HcCCCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc------c-----
Confidence            3445553 467789999999999999998866521111 1 1233457889999888877653 1110      0     


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRN  142 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p  142 (208)
                        ....+.+||... ...+.+.-|||+|+++|..+.-..|
T Consensus        99 --~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           99 --GEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             ----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             --cccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence              112345777653 2345677899999999998875544

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=89.06  E-value=0.2  Score=39.40  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=25.6

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +..++|+|+.+.||+ ..++.+.++||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            446899999999999 5566789999987764

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=86.91  E-value=0.22  Score=41.73  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=15.8

Q ss_pred             CCCeEEeCCCCCcEEEcCC
Q 042116           60 EAPIIHCDIKPHNILMDEF   78 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~   78 (208)
                      +..++|+|+.+.||+++.+
T Consensus       248 ~~v~~H~Dl~~gNiL~~~~  266 (429)
T 1nw1_A          248 PVTFCHNDLQEGNILLPKA  266 (429)
T ss_dssp             CEEEECSCCCGGGEEEEC-
T ss_pred             CeEEEeCCCCCCeEEeeCC
Confidence            3468999999999999875

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=86.78  E-value=0.74  Score=35.86  Aligned_cols=41  Identities=20%  Similarity=0.067  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHH-HHhCCCCCeEEeCCCCCcEEEcCCCcEEEEe
Q 042116           44 LILPQPSCNVY-LHNECEAPIIHCDIKPHNILMDEFWTAKISD   85 (208)
Q Consensus        44 i~~~i~~~l~y-lH~~~~~~iiHrdlk~~nill~~~~~~kl~d   85 (208)
                      .+..+...|.. +-...++.++|+|+.+.|++++.++ ..+.|
T Consensus       170 ~~e~l~~~L~~~~~~~~~p~LvHGDlw~gNvl~~~~g-~~~iD  211 (288)
T 3f7w_A          170 LVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDDG-AVVID  211 (288)
T ss_dssp             HHHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEETTE-EEECS
T ss_pred             HHHHHHHHHHHhcccCCCCeeeecCCCCCcEEEcCCC-eEEEe
Confidence            34444444433 2233356899999999999999886 34544

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=86.48  E-value=0.35  Score=40.93  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=15.0

Q ss_pred             CCCeEEeCCCCCcEEEc
Q 042116           60 EAPIIHCDIKPHNILMD   76 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~   76 (208)
                      +..++|+|+.+.||+++
T Consensus       289 ~~v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          289 PIVLCHCDLLSSNIINT  305 (458)
T ss_dssp             CEEEECSCCCGGGEEEC
T ss_pred             CeeEEecCCCCCcEEee
Confidence            34689999999999998

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=85.22  E-value=0.57  Score=35.57  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=49.3

Q ss_pred             ccccceEEeC--CCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHH-HHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEec
Q 042116           10 EGERGCEVKG--KRKQFGAVVRRRENKEKESNLGLLLILPQPSCNV-YLHNECEAPIIHCDIKPHNILMDEFWTAKISDF   86 (208)
Q Consensus        10 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~-ylH~~~~~~iiHrdlk~~nill~~~~~~kl~df   86 (208)
                      |+...+.|.-  ....|..+      ..++...+++++.+++.... ++++     -+|--+.|+|++++.++.+++.-.
T Consensus        60 eD~~~i~y~~~~~~~~f~~i------~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL~f~~~~~p~i~hR  128 (219)
T 4ano_A           60 EDEVKVVIKPPSSFLTFAAI------RKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENLMFNRALEPFFLHV  128 (219)
T ss_dssp             SSEEEEEEECCTTCEEHHHH------HTSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGEEECTTCCEEESCC
T ss_pred             CCEEEEEEEcCcccCcHHHH------HhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceEEEeCCCcEEEEEc
Confidence            4445555544  33345433      46788888999998888665 4544     478889999999999999999877


Q ss_pred             CCc
Q 042116           87 GLA   89 (208)
Q Consensus        87 g~~   89 (208)
                      |+-
T Consensus       129 Gi~  131 (219)
T 4ano_A          129 GVK  131 (219)
T ss_dssp             EET
T ss_pred             CCc
Confidence            753

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=83.68  E-value=0.63  Score=38.33  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=26.9

Q ss_pred             CCCeEEeCCCCCcEEEcCC----CcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEF----WTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~----~~~kl~dfg~~~~   91 (208)
                      +..++|+|+.+.||+++.+    +.+.++||..+..
T Consensus       219 ~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          219 PVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             CEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             CcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence            3468999999999999876    6789999987754

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=81.27  E-value=0.79  Score=34.67  Aligned_cols=52  Identities=13%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLA   89 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~   89 (208)
                      -...+...+++++.+|+....++++.     +|--+.|+|++++.++.+++.-.|+.
T Consensus        75 ik~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik  126 (215)
T 4ann_A           75 IKSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQ  126 (215)
T ss_dssp             GGGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEET
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCc
Confidence            45678888899999998887666544     78889999999999999998876653

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=81.15  E-value=0.62  Score=37.25  Aligned_cols=27  Identities=11%  Similarity=0.080  Sum_probs=23.6

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecC
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFG   87 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg   87 (208)
                      ++.++|+|+.+.|++++.++ +.|+|+.
T Consensus       206 ~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          206 KPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             CCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             CceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            56899999999999999887 8888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-25
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-22
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-22
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	6e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-22
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-22
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-22
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-20
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-20
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	8e-20
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	9e-20
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-19
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-19
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-19
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-19
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-18
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-18
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-18
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-18
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-18
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	8e-18
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-17
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-16
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-16
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-15
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-15
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-14
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-14
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-14
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-14
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	9e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-13
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-13
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-13
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-13
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-13
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-13
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-13
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-13
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-12
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	9e-11
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-10
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	8e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-07
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	9e-05

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL  +    I+H D+KP NIL++     K+ DFG++  L+     +F    GTR YM+PE
Sbjct: 119 YLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV---GTRSYMSPE 173

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH 173
             + T  S+++++++ G+ L+E+   R  +    +K  E++F         +        
Sbjct: 174 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP 233

Query: 174 GEEVNKKTLENMIKSVVMMLEGITDISIPP 203
           G  ++   +++     +  L        PP
Sbjct: 234 GRPLSSYGMDSRPPMAIFELLDYIVNEPPP 263

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (222), Expect = 2e-22
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ-TRTFTLIRGTRGYMAP 112
           YLH +    IIH D+K +NI + E  T KI DFGLA +      +  F  + G+  +MAP
Sbjct: 119 YLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175

Query: 113 EW---SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
           E        P S +++V+ +G+VL E++  +     + +  ++I+F+
Sbjct: 176 EVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFM 221

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 4e-22
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILM-DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           +LH     PIIH D+K  NI +     + KI D GLA L      +      GT  +MAP
Sbjct: 127 FLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAV---IGTPEFMAP 182

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           E  +        +V+ +G+ +LE+     
Sbjct: 183 EMYEE-KYDESVDVYAFGMCMLEMATSEY 210

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 6e-22
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y H      +IH DIKP N+L+      KI+DFG +      +  T     GT  Y+ PE
Sbjct: 121 YCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL---CGTLDYLPPE 174

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKP--EEIVFINLTYKCFIDREFDKL 171
             +      K ++++ GV+  E +  +   E +  +   + I  +  T+  F+      L
Sbjct: 175 MIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDL 234

Query: 172 V 172
           +
Sbjct: 235 I 235

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 6e-22
 Identities = 28/116 (24%), Positives = 57/116 (49%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           +    EA +IH D+   N L+ E    K+SDFG+ + ++ DQ  + T  +    + +PE 
Sbjct: 114 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV 173

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDK 170
              +  S K++V+++GV++ E+    +    + S  E +  I+  ++ +  R    
Sbjct: 174 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST 229

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 7e-22
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++        IH D++  NIL+ +  + KI+DFGLA+L+  ++       +    + APE
Sbjct: 124 FIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPE 180

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDK 170
                  ++K++V+++G++L EIV   R      + PE I  +   Y+        +
Sbjct: 181 AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPE 237

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 7e-22
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+        +H D++  NIL+ E    K++DFGLA+L+  ++       +    + APE
Sbjct: 128 YVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPE 184

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH 173
            +     ++K++V+++G++L E+    R         E +  +   Y+     E  + +H
Sbjct: 185 AALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLH 244

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 8e-22
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 54  YLH--NECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
             H  ++    ++H D+KP N+ +D     K+ DFGLA++L  D +     +  T  YM+
Sbjct: 124 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVG-TPYYMS 182

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE       + K+++++ G +L E+     
Sbjct: 183 PEQMNRMSYNEKSDIWSLGCLLYELCALMP 212

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-20
 Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 56  HNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL--IRGTRGYMAPE 113
                   +H D+   NIL++     K+SDFGL+++L  D   T+T    +    + APE
Sbjct: 124 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPE 183

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH 173
                  +  ++V+++G+V+ E++        + S  E +  IN  ++     +    ++
Sbjct: 184 AISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIY 243

Query: 174 GEEVNKKTLEN------MIKSVVMMLEGI 196
             ++  +  +           +V +L+ +
Sbjct: 244 --QLMMQCWQQERARRPKFADIVSILDKL 270

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 4e-20
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQ---TRTFTLIRGTRGYMA 111
           +        +H D+   N ++DE +T K++DFGLA+ +   +       T  +    +MA
Sbjct: 143 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
            E  +    + K++V+++GV+L E++        D +  +  V++
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYL 247

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 8e-20
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
           +L        +H D+   N+L+      KI DFGLA+ +M D         R    +MAP
Sbjct: 179 FLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP 235

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
           E       ++K++V++YG++L EI     N             +
Sbjct: 236 ESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKL 279

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 9e-20
 Identities = 21/116 (18%), Positives = 49/116 (42%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           +        +H D+   N L+++    K+SDFGL++ ++ D+  +    +    +  PE 
Sbjct: 113 MEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV 172

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDK 170
              +  S K++++ +GV++ EI    +      +  E    I    + +      +
Sbjct: 173 LMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASE 228

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.0 bits (202), Expect = 2e-19
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +IH D+K  NIL+ E    K+ DFG A ++ P  +       GT  +MAPE
Sbjct: 130 YLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS-----FVGTPYWMAPE 181

Query: 114 W---SKNTPISMKANVFNYGVVLLEIVCCRR 141
                       K +V++ G+  +E+   + 
Sbjct: 182 VILAMDEGQYDGKVDVWSLGITCIELAERKP 212

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 3e-19
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD-QTRTFTLIRGTRGYMAP 112
           YLH      I H DIKP N+L+DE    KISDFGLA +   + + R    + GT  Y+AP
Sbjct: 118 YLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 174

Query: 113 EWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKL 171
           E  K     +   +V++ G+VL  ++        D        + +   K      + K+
Sbjct: 175 ELLKRREFHAEPVDVWSCGIVLTAMLAGELPW--DQPSDSCQEYSDWKEKKTYLNPWKKI 232

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (199), Expect = 4e-19
 Identities = 24/85 (28%), Positives = 41/85 (48%)

Query: 59  CEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWSKNT 118
            +   IH D+   N L+ E    K++DFGL++L+  D        +    + APE     
Sbjct: 132 EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYN 191

Query: 119 PISMKANVFNYGVVLLEIVCCRRNM 143
             S+K++V+ +GV+L EI     + 
Sbjct: 192 KFSIKSDVWAFGVLLWEIATYGMSP 216

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 4e-19
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH   +  IIH D+K  NIL       K++DFG++        R  + I GT  +MAPE
Sbjct: 125 YLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI-GTPYWMAPE 180

Query: 114 W-----SKNTPISMKANVFNYGVVLLEIVCCRR 141
                 SK+ P   KA+V++ G+ L+E+     
Sbjct: 181 VVMCETSKDRPYDYKADVWSLGITLIEMAEIEP 213

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 8e-19
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           +    +   IH D+   NIL+ E + AKI+DFGL++       +T    R    +MA E 
Sbjct: 140 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG--RLPVRWMAIES 197

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPE 151
              +  +  ++V++YGV+L EIV          +  E
Sbjct: 198 LNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE 234

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 1e-18
 Identities = 22/102 (21%), Positives = 40/102 (39%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           L        +H DI   N+L+      K+ DFGL++ +        +  +    +MAPE 
Sbjct: 121 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES 180

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
                 +  ++V+ +GV + EI+             + I  I
Sbjct: 181 INFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRI 222

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (195), Expect = 2e-18
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT----RTFTLIRGTRGY 109
            +    +   +H D+   NIL++     K+SDFGL++ L  D +     +    +    +
Sbjct: 140 GMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRW 199

Query: 110 MAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFD 169
            APE  +    +  ++V++YG+V+ E++        D +  + I  I   Y+     +  
Sbjct: 200 TAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCP 259

Query: 170 KLVH 173
             +H
Sbjct: 260 SALH 263

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 54  YLHNEC-----EAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL---IRG 105
           +LH E      +  I H D+K  NIL+ +  T  I+D GLA                  G
Sbjct: 115 HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVG 174

Query: 106 TRGYMAPEW------SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLT 159
           T+ YMAPE        K+     +A+++  G+V  EI        I          +  +
Sbjct: 175 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234

Query: 160 -------YKCFIDREFDKLVHGEEVNKKTLENMIKSVVMMLE 194
                   K   +++    +     + + L  M K +     
Sbjct: 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 276

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPE 113
           +    E   +H D+   N L+ E    KI+DFGL++ +   D  +          +M PE
Sbjct: 153 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPE 212

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
                  + +++V+ YGVVL EI           +  E I ++
Sbjct: 213 SIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYV 255

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (194), Expect = 3e-18
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH      +IH DIK  NIL+    + K++DFG    + P+Q++  T++ GT  +MAPE
Sbjct: 131 FLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYWMAPE 186

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
                    K ++++ G++ +E++    
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGEP 214

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 4e-18
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
            L       IIH D+KP NIL++E    +I+DFG AK+L P+  +       GT  Y++P
Sbjct: 120 ALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           E          ++++  G ++ ++V    
Sbjct: 180 ELLTEKSACKSSDLWALGCIIYQLVAGLP 208

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 4e-18
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPE 113
           ++   +  ++H D+   N+L+      KI+DFGLAKLL  ++        +    +MA E
Sbjct: 124 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALE 183

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
              +   + +++V++YGV + E++    
Sbjct: 184 SILHRIYTHQSDVWSYGVTVWELMTFGS 211

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.8 bits (191), Expect = 8e-18
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L       II+ D+KP NIL+D+    KI+DFG AK +          + GT  Y+APE
Sbjct: 116 ALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT----LCGTPDYIAPE 171

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
                P +   + +++G+++ E++    
Sbjct: 172 VVSTKPYNKSIDWWSFGILIYEMLAGYT 199

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA 111
           YL        +H D+   N+L+     AKISDFGL+K L  D+   +  T  +    + A
Sbjct: 122 YLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYA 178

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE       S K++V+++GV++ E     +
Sbjct: 179 PECINYYKFSSKSDVWSFGVLMWEAFSYGQ 208

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 4e-17
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L       +++ DIK  N+++D+    KI+DFGL K  + D     T   GT  Y+APE
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC-GTPEYLAPE 175

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDK 170
             ++       + +  GVV+ E++C R          E +  + L  +    R    
Sbjct: 176 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HERLFELILMEEIRFPRTLSP 230

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 6e-17
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YL        +H D+   N+L+ E   AK+SDFGL K     Q            + APE
Sbjct: 118 YLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK----LPVKWTAPE 170

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
             +    S K++V+++G++L EI    R         + +  +   YK
Sbjct: 171 ALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK 218

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 6e-17
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
           +L ++     IH D+   NIL+      KI DFGLA+ +  D         R    +MAP
Sbjct: 160 FLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAP 216

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
           E   N   + +++V++YG+ L E+     +         +   +
Sbjct: 217 ESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKM 260

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT--RTFTLIRGTRGYMA 111
           YL  +     +H D+   N+L+     AKISDFGL+K L  D +     +  +    + A
Sbjct: 124 YLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYA 180

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE       S +++V++YGV + E +   +
Sbjct: 181 PECINFRKFSSRSDVWSYGVTMWEALSYGQ 210

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 3e-16
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF-TLIRGTRGYMAP 112
           +L        IH D+   NIL+ E    KI DFGLA+ +  D         R    +MAP
Sbjct: 149 FLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 205

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
           E   +   +++++V+++GV+L EI     +        EE    
Sbjct: 206 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR 249

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 4e-16
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           L       I++ D+K  NIL+D+    KI+DFG+ K  M    +T T   GT  Y+APE 
Sbjct: 116 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT-FCGTPDYIAPEI 174

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCRR 141
                 +   + +++GV+L E++  + 
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLIGQS 201

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 3e-15
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 55  LHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           + +     ++H DIK  NIL+D      K+ DFG   LL       F    GTR Y  PE
Sbjct: 123 VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD---GTRVYSPPE 179

Query: 114 W-SKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLV 172
           W   +      A V++ G++L ++VC     E D    EEI+   + ++  +  E   L+
Sbjct: 180 WIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQVFFRQRVSSECQHLI 235

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 3e-15
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           +LH+     ++H D+KP NIL+      K++DFGLA++       T   +  T  Y APE
Sbjct: 131 FLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS--VVVTLWYRAPE 185

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
               +  +   ++++ G +  E+   + 
Sbjct: 186 VLLQSSYATPVDLWSVGCIFAEMFRRKP 213

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 70.1 bits (171), Expect = 6e-15
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILM--DEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           ++H       +H D+KP NI+         K+ DFGL   L P Q+   T   GT  + A
Sbjct: 139 HMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVT--TGTAEFAA 193

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE ++  P+    ++++ GV+   ++    
Sbjct: 194 PEVAEGKPVGYYTDMWSVGVLSYILLSGLS 223

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 6e-15
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF--TLIRGTRGYMAP 112
           +        IH D+   N+L+      KI DFGL + L  +          +    + AP
Sbjct: 124 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAP 183

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
           E  K    S  ++ + +GV L E+    +   I  +  + +  I
Sbjct: 184 ESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKI 227

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRGYMA 111
            L+   +  IIH D+KP NI++      K+ DFG+A+ +            + GT  Y++
Sbjct: 123 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLS 182

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE ++   +  +++V++ G VL E++    
Sbjct: 183 PEQARGDSVDARSDVYSLGCVLYEVLTGEP 212

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP-DQTRTFTLIRGTRGYMAPE 113
           +        +H D+   N ++ E +T KI DFG+ + +   D  R          +M+PE
Sbjct: 146 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPE 205

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
             K+   +  ++V+++GVVL EI           S  + + F+
Sbjct: 206 SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV 248

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           ++HN     +++ D+KP NIL+DE    +ISD GLA      +        GT GYMAPE
Sbjct: 122 HMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---VGTHGYMAPE 175

Query: 114 -WSKNTPISMKANVFNYGVVLLEIVCCRRNME-IDPSKPEEIVFINLTYKCFIDREFDK 170
              K       A+ F+ G +L +++               EI  + LT    +   F  
Sbjct: 176 VLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSP 234

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 4e-14
 Identities = 19/145 (13%), Positives = 50/145 (34%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L       ++H D+KP N+L++     K+++FGLA+            +          
Sbjct: 113 GLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDV 172

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDKLVH 173
                  S   ++++ G +  E+    R +       +++  I        + ++  +  
Sbjct: 173 LFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTK 232

Query: 174 GEEVNKKTLENMIKSVVMMLEGITD 198
             +     +     S+V ++  +  
Sbjct: 233 LPDYKPYPMYPATTSLVNVVPKLNA 257

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 66.6 bits (162), Expect = 5e-14
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            LH   +  I+H D+KP NIL+D+    K++DFG +  L P +      + GT  Y+APE
Sbjct: 125 ALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRE--VCGTPSYLAPE 179

Query: 114 W------SKNTPISMKANVFNYGVVLLEIVCCR 140
                    +     + ++++ GV++  ++   
Sbjct: 180 IIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGS 212

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 9e-14
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRGYMA 111
            L     A ++H D+KP N+L++     KI DFGLA++  PD       T    TR Y A
Sbjct: 121 GLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA 180

Query: 112 PE-WSKNTPISMKANVFNYGVVLLEIVCCR 140
           PE    +   +   ++++ G +L E++  R
Sbjct: 181 PEIMLNSKGYTKSIDIWSVGCILAEMLSNR 210

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEF--WTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           ++H   E  I+H DIKP NI+ +     + KI DFGLA  L PD+    T    T  + A
Sbjct: 142 HMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVT--TATAEFAA 196

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE     P+    +++  GV+   ++    
Sbjct: 197 PEIVDREPVGFYTDMWAIGVLGYVLLSGLS 226

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            +    +  ++H D+KP N+L++     KI+DFGLA+       +    I          
Sbjct: 112 GIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDV 171

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCR 140
              +   S   ++++ G +  E+V   
Sbjct: 172 LMGSKKYSTTIDIWSVGCIFAEMVNGT 198

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 65.6 bits (159), Expect = 1e-13
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWT-----AKISDFGLAKLLMPDQTRTF------TL 102
            + +  E  +++ DIKP N L+    +       + DFG+ K      T+          
Sbjct: 113 RVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKN 172

Query: 103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME 144
           + GT  YM+         S + ++   G V +  +      +
Sbjct: 173 LSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ 214

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD--EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA 111
           +LH      I H DI+P NI+       T KI +FG A+ L       F L+     Y A
Sbjct: 117 FLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL--KPGDNFRLLFTAPEYYA 171

Query: 112 PEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           PE  ++  +S   ++++ G ++  ++    
Sbjct: 172 PEVHQHDVVSTATDMWSLGTLVYVLLSGIN 201

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 2e-13
 Identities = 18/88 (20%), Positives = 34/88 (38%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L       ++H D+KP N+L++     K++DFGLA+            +          
Sbjct: 114 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEI 173

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
                  S   ++++ G +  E+V  R 
Sbjct: 174 LLGCKYYSTAVDIWSLGCIFAEMVTRRA 201

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 2e-13
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFT-LIRGTRGYMAPE 113
           +        IH D+   N+L+ E    KI+DFGLA+ +        T   R    +MAPE
Sbjct: 148 MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPE 207

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
              +   + +++V+++GV+L EI     
Sbjct: 208 ALFDRIYTHQSDVWSFGVLLWEIFTLGG 235

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 3e-13
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTA----KISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           ++      I H D+KP NI++ +        KI DFGLA  +  D    F  I GT  ++
Sbjct: 126 VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI--DFGNEFKNIFGTPEFV 183

Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYKCFIDREFDK 170
           APE     P+ ++A++++ GV+   ++          +K E +  ++     F D  F  
Sbjct: 184 APEIVNYEPLGLEADMWSIGVITYILLSGASPFL-GDTKQETLANVSAVNYEFEDEYFSN 242

Query: 171 L 171
            
Sbjct: 243 T 243

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 3e-13
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L    +  I+H D+KP+N+L+DE    K++DFGLAK         +T    TR Y APE
Sbjct: 112 GLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR-AYTHQVVTRWYRAPE 170

Query: 114 -WSKNTPISMKANVFNYGVVLLEIVCCR 140
                    +  +++  G +L E++   
Sbjct: 171 LLFGARMYGVGVDMWAVGCILAELLLRV 198

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIR---GTRGYM 110
            L+      I+H D+K  N+L+      K++DFGLA+     +            T  Y 
Sbjct: 129 GLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYR 188

Query: 111 APEW-SKNTPISMKANVFNYGVVLLEIVCCRR 141
            PE            +++  G ++ E+     
Sbjct: 189 PPELLLGERDYGPPIDLWGAGCIMAEMWTRSP 220

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.1 bits (155), Expect = 6e-13
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILM---DEFWTAKISDFGLAKLLMPDQTRTF------TLIR 104
           Y+H       IH D+KP N LM    +     I DFGLAK     +T           + 
Sbjct: 118 YIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLT 174

Query: 105 GTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFINLTYK 161
           GT  Y +         S + ++ + G VL+         +   +  +   +  ++ K
Sbjct: 175 GTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK 231

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 3e-12
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFW---TAKISDFGLAKLLMPDQTRTFTLIRGTRGYM 110
           YLH+     I H D+KP N+L          K++DFG AK      + T      T  Y+
Sbjct: 126 YLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTP--CYTPYYV 180

Query: 111 APEWSKNTPISMKANVFNYGVVLLEIVCCRR 141
           APE           ++++ GV++  ++C   
Sbjct: 181 APEVLGPEKYDKSCDMWSLGVIMYILLCGYP 211

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (149), Expect = 4e-12
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 59  CEAPIIHCDIKPHNIL---MDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEWS 115
            +  I+H D+KP N+L   +DE     ISDFGL+K+  P    +     GT GY+APE  
Sbjct: 124 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLST--ACGTPGYVAPEVL 181

Query: 116 KNTPISMKANVFNYGVVLLEIVCCRR 141
              P S   + ++ GV+   ++C   
Sbjct: 182 AQKPYSKAVDCWSIGVIAYILLCGYP 207

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
            L +  +  II+ DIK  NIL+D      ++DFGL+K  + D+T       GT  YMAP+
Sbjct: 141 ALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPD 200

Query: 114 W--SKNTPISMKANVFNYGVVLLEIVCCRR 141
                ++      + ++ GV++ E++    
Sbjct: 201 IVRGGDSGHDKAVDWWSLGVLMYELLTGAS 230

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (139), Expect = 9e-11
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           YLH      +I+ D+KP N+L+D+    +++DFG AK +          + GT   +APE
Sbjct: 156 YLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT----LCGTPEALAPE 208

Query: 114 WSKNTPISMKANVFNYGVVLLEIVCCRR 141
              +   +   + +  GV++ E+     
Sbjct: 209 IILSKGYNKAVDWWALGVLIYEMAAGYP 236

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 55  LHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPEW 114
           + +   A IIH D+KP NI++    T KI DFGLA+        T      TR Y APE 
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY--VVTRYYRAPEV 189

Query: 115 SKNTPISMKANVFNYGVVLLEIVCCR 140
                     ++++ G ++ E+V  +
Sbjct: 190 ILGMGYKENVDIWSVGCIMGEMVRHK 215

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 8e-10
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 54  YLHNECEAPIIHCDIKP-HNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           Y+H+     I H DIKP + +L  +    K+ DFG AK L+  +    + I         
Sbjct: 137 YIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE-PNVSYICSRYYRAPE 192

Query: 113 EWSKNTPISMKANVFNYGVVLLEIVCCRR 141
                T  +   +V++ G VL E++  + 
Sbjct: 193 LIFGATDYTSSIDVWSAGCVLAELLLGQP 221

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 54  YLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP 112
           Y H+     I+H D+KPHN+++D E    ++ D+GLA+   P Q         +R +  P
Sbjct: 144 YCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNV--RVASRYFKGP 198

Query: 113 E-WSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPSKPEEIVFI 156
           E            ++++ G +L  ++  +          +++V I
Sbjct: 199 ELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRI 243

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 29  RRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFG 87
             ++ + +   L  +  + +       +      IIH DIKP N+LM+       +    
Sbjct: 113 LIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIK 172

Query: 88  LAKLLMPDQT-RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID 146
           +A L         +T    TR Y +PE     P    A++++   ++ E++      E D
Sbjct: 173 IADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 232

Query: 147 PSKPE 151
                
Sbjct: 233 EGHSY 237

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H+     IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 136 YIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVA----TRWYRAPE 188

Query: 114 WSKNT-PISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  R
Sbjct: 189 IMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE 113
           Y+H      IIH D+KP N+ ++E    KI DFGLA+    + T        TR Y APE
Sbjct: 136 YIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTG----YVVTRWYRAPE 188

Query: 114 WSKNT-PISMKANVFNYGVVLLEIVCCR 140
              N    +   ++++ G ++ E++  +
Sbjct: 189 VILNWMRYTQTVDIWSVGCIMAEMITGK 216

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 54  YLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAK 90
             ++     I+H D+  +N+L+ E     I DF  + 
Sbjct: 118 KFYHRG---IVHGDLSQYNVLVSE-EGIWIIDFPQSV 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.98
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.97
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.97
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.97
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.97
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.97
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.97
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.97
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.97
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.97
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.97
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.97
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.97
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.97
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.97
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.97
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.97
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.97
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.97
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.97
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.97
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.96
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.96
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.96
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.96
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.96
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.96
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.96
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.96
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.96
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.96
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.96
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.96
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.96
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.96
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.96
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.96
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.96
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.95
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.95
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.95
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.95
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.95
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.95
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.95
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.95
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.95
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.95
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.95
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.95
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.94
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.94
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.94
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.94
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.93
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.93
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.92
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.91
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.42
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.89
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	93.26
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	93.22
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	91.44
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	89.6

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.6e-33  Score=219.89  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=105.6

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.++.++..+.   ....+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        81 vmEy~~gg~L~~~l~---~~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~  154 (271)
T d1nvra_          81 FLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFR  154 (271)
T ss_dssp             EEECCTTEEGGGGSB---TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECE
T ss_pred             EEeccCCCcHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeec
Confidence            345666666555442   345789999999999999999999999   99999999999999999999999999998764


Q ss_pred             CCCC-ceeeeeecCCCcCchhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQT-RTFTLIRGTRGYMAPEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~-~~~~~~~g~~~y~aPE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... ......+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||...
T Consensus       155 ~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~  209 (271)
T d1nvra_         155 YNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  209 (271)
T ss_dssp             ETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS
T ss_pred             cCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCC
Confidence            3332 22334569999999999988776 57899999999999999999999754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-32  Score=219.35  Aligned_cols=127  Identities=26%  Similarity=0.332  Sum_probs=98.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+.  .....+++..++.++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus        82 ~Ey~~~g~L~~~l~--~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~  156 (276)
T d1uwha_          82 TQWCEGSSLYHHLH--IIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSR  156 (276)
T ss_dssp             EECCCEEEHHHHHH--TSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC---
T ss_pred             EecCCCCCHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeeccc
Confidence            34444444444333  2345689999999999999999999998   999999999999999999999999999977643


Q ss_pred             CCC-ceeeeeecCCCcCchhhhhc---CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQT-RTFTLIRGTRGYMAPEWSKN---TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~-~~~~~~~g~~~y~aPE~~~~---~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... .......||+.|+|||++.+   ..++.++|||||||++|||+||+.||...
T Consensus       157 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~  212 (276)
T d1uwha_         157 WSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI  212 (276)
T ss_dssp             ---------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCC
Confidence            322 22334568999999999864   35789999999999999999999999754

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.7e-32  Score=216.93  Aligned_cols=125  Identities=22%  Similarity=0.316  Sum_probs=105.1

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.++. +..+..   ...++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        95 vmEy~~gg~-L~~~~~---~~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~  167 (293)
T d1yhwa1          95 VMEYLAGGS-LTDVVT---ETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  167 (293)
T ss_dssp             EEECCTTCB-HHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEecCCCc-HHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeec
Confidence            345555554 444443   24689999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       168 ~~~~~-~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  219 (293)
T d1yhwa1         168 PEQSK-RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (293)
T ss_dssp             STTCC-BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccccc-ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC
Confidence            43322 23446999999999999999999999999999999999999999744

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-32  Score=214.29  Aligned_cols=124  Identities=23%  Similarity=0.311  Sum_probs=104.9

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.++.+...+..   ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        84 vmEy~~~g~L~~~l~~---~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~  157 (263)
T d2j4za1          84 ILEYAPLGTVYRELQK---LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP  157 (263)
T ss_dssp             EEECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCC
T ss_pred             EEeecCCCcHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecC
Confidence            3456666555544432   35689999999999999999999999   99999999999999999999999999997654


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...   .....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       158 ~~~---~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  207 (263)
T d2j4za1         158 SSR---RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  207 (263)
T ss_dssp             CCC---CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCc---ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence            322   23456999999999999999999999999999999999999999644

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-32  Score=222.90  Aligned_cols=110  Identities=25%  Similarity=0.259  Sum_probs=96.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........ ......||+.|+||
T Consensus       159 ~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aP  235 (325)
T d1rjba_         159 NVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  235 (325)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCCh
Confidence            4589999999999999999999998   9999999999999999999999999999876544332 22345589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |++.+..++.++|||||||++|||+| |+.||...
T Consensus       236 E~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         236 ESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             HHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999998 89999755

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-32  Score=215.98  Aligned_cols=132  Identities=21%  Similarity=0.299  Sum_probs=97.3

Q ss_pred             ceEEeCCCCcchHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEeCCCCCcEEEcCCCcEEEEecCCce
Q 042116           14 GCEVKGKRKQFGAVVRRR-ENKEKESNLGLLLILPQPSCNVYLHNEC--EAPIIHCDIKPHNILMDEFWTAKISDFGLAK   90 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~nill~~~~~~kl~dfg~~~   90 (208)
                      ..||+.++.+...+.... ....+++..++.++.|++.||+|||+..  ..+|+||||||+|||++.++.+||+|||+++
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            345565555555444333 4567999999999999999999999862  1249999999999999999999999999998


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....... ......||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       163 ~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~  217 (269)
T d2java1         163 ILNHDTS-FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF  217 (269)
T ss_dssp             HC------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ecccCCC-ccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC
Confidence            7643322 223456899999999999999999999999999999999999999643

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-32  Score=217.05  Aligned_cols=125  Identities=22%  Similarity=0.231  Sum_probs=92.9

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+.  .....+++..++.++.|+|.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus        79 ~E~~~~g~L~~~l~--~~~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  153 (263)
T d1sm2a_          79 FEFMEHGCLSDYLR--TQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD  153 (263)
T ss_dssp             EECCTTCBHHHHHH--TTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC-------
T ss_pred             EEecCCCcHHHHhh--ccccCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccC
Confidence            45555555444333  2446788999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      ..........||+.|+|||++.+..++.++|||||||++|||+|+..|+.
T Consensus       154 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~  203 (263)
T d1sm2a_         154 DQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY  203 (263)
T ss_dssp             -----------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             CCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCC
Confidence            44433344568999999999999999999999999999999999655554

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-32  Score=222.09  Aligned_cols=125  Identities=24%  Similarity=0.375  Sum_probs=101.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++ ++..+..+  ...+++..+..++.|++.||.|||+++  +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        84 Ey~~gg-~L~~~l~~--~~~l~~~~~~~~~~qil~aL~yLH~~~--~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  158 (322)
T d1s9ja_          84 EHMDGG-SLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  158 (322)
T ss_dssp             ECCTTE-EHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             EcCCCC-cHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEccccCHHHeeECCCCCEEEeeCCCccccCCC
Confidence            444444 44444432  346899999999999999999999631  7999999999999999999999999999865322


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      .   ....+||+.|+|||++.+..++.++||||+||++|||++|+.||...+.
T Consensus       159 ~---~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~  208 (322)
T d1s9ja_         159 M---ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA  208 (322)
T ss_dssp             T---C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCT
T ss_pred             c---cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            1   2345699999999999999999999999999999999999999986543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-32  Score=216.26  Aligned_cols=129  Identities=22%  Similarity=0.275  Sum_probs=105.4

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.+|.+.. .........+++..+++++.||++||.|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        85 v~Ey~~~g~L~~-~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~  160 (272)
T d1qpca_          85 ITEYMENGSLVD-FLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (272)
T ss_dssp             EEECCTTCBHHH-HTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             EEEeCCCCcHHH-HHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEcc
Confidence            345555554443 33344555789999999999999999999998   99999999999999999999999999999875


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...........||+.|+|||++....++.++|||||||++|||+||..|+...
T Consensus       161 ~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~  213 (272)
T d1qpca_         161 DNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG  213 (272)
T ss_dssp             SSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             CCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence            44333333445889999999999888999999999999999999977666543

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-32  Score=217.38  Aligned_cols=130  Identities=22%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             ceEEeCCCCcchHHHHhhh-------------ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCc
Q 042116           14 GCEVKGKRKQFGAVVRRRE-------------NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWT   80 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~   80 (208)
                      ..||+.++.+...+...+.             ...+++..++.++.||+.||.|||+.   +|+||||||+|||++.++.
T Consensus        96 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~~~~  172 (299)
T d1ywna1          96 IVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNV  172 (299)
T ss_dssp             EEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGC
T ss_pred             EEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECCCCc
Confidence            3466666666666654433             24588999999999999999999999   9999999999999999999


Q ss_pred             EEEEecCCceecCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcC-cCCCCC
Q 042116           81 AKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCR-RNMEID  146 (208)
Q Consensus        81 ~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~-~p~~~~  146 (208)
                      +||+|||+++........ ......||+.|+|||.+.+..++.++|||||||++|||+||. .||...
T Consensus       173 ~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~  240 (299)
T d1ywna1         173 VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  240 (299)
T ss_dssp             EEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             EEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCC
Confidence            999999999865443322 223456899999999999999999999999999999999975 566543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=211.66  Aligned_cols=124  Identities=24%  Similarity=0.278  Sum_probs=100.7

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc-CCCcEEEEecCCceecC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD-EFWTAKISDFGLAKLLM   93 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~dfg~~~~~~   93 (208)
                      .||+.++.+...+..   ...+++..++.++.|+++||+|||+. .++|+||||||+|||++ .++.+||+|||+++...
T Consensus        91 mE~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          91 TELMTSGTLKTYLKR---FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             EECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EeCCCCCcHHHHHhc---cccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence            355555555544432   35789999999999999999999998 22399999999999996 57899999999997643


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..   ......||+.|+|||++.+ .++.++|||||||++|+|++|+.||...
T Consensus       167 ~~---~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~  215 (270)
T d1t4ha_         167 AS---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  215 (270)
T ss_dssp             TT---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             CC---ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc
Confidence            32   2234569999999999875 5999999999999999999999999643

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=215.28  Aligned_cols=111  Identities=26%  Similarity=0.412  Sum_probs=95.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCC-ceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQT-RTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~g~~~y~a  111 (208)
                      ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... .......||+.|+|
T Consensus       102 ~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~A  178 (288)
T d1uu3a_         102 IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVS  178 (288)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccC
Confidence            35789999999999999999999999   999999999999999999999999999987654322 22334569999999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||++.+..++.++||||+||++|+|++|+.||...
T Consensus       179 PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         179 PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence            99999999999999999999999999999999754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.8e-32  Score=215.40  Aligned_cols=129  Identities=24%  Similarity=0.295  Sum_probs=108.0

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.+|.++..+ .......+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        91 v~E~~~~g~l~~~l-~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~  166 (287)
T d1opja_          91 ITEFMTYGNLLDYL-RECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMT  166 (287)
T ss_dssp             EEECCTTCBHHHHH-HHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCC
T ss_pred             EeecccCcchHHHh-hhccccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecC
Confidence            34566666555544 445667889999999999999999999998   99999999999999999999999999998765


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...........|++.|+|||++.+..++.++|||||||++|||++|..|+...
T Consensus       167 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~  219 (287)
T d1opja_         167 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  219 (287)
T ss_dssp             SSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             CCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCc
Confidence            54443333445889999999999999999999999999999999988776543

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=212.82  Aligned_cols=129  Identities=21%  Similarity=0.248  Sum_probs=100.2

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.+| ++..+........+++..++.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        89 v~Ey~~~g-~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~  164 (285)
T d1fmka3          89 VTEYMSKG-SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE  164 (285)
T ss_dssp             EECCCTTC-BHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             EEEecCCC-chhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhcc
Confidence            34444544 444455445566799999999999999999999998   99999999999999999999999999998765


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...........||+.|+|||++....++.++|||||||++|||++|..|+...
T Consensus       165 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~  217 (285)
T d1fmka3         165 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG  217 (285)
T ss_dssp             -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             CCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCC
Confidence            44433334455899999999999999999999999999999999987776544

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-32  Score=217.04  Aligned_cols=126  Identities=23%  Similarity=0.251  Sum_probs=100.8

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+..  ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus        88 mEy~~~g~L~~~~~~--~~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~  162 (288)
T d2jfla1          88 IEFCAGGAVDAVMLE--LERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR  162 (288)
T ss_dssp             EECCTTEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHH
T ss_pred             EecCCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCC
Confidence            344544444433332  345689999999999999999999999   999999999999999999999999999976432


Q ss_pred             CCCceeeeeecCCCcCchhhhh-----cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSK-----NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .. .......||+.|+|||++.     ...++.++|||||||++|+|++|+.||...
T Consensus       163 ~~-~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~  218 (288)
T d2jfla1         163 TI-QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL  218 (288)
T ss_dssp             HH-HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             Cc-ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC
Confidence            11 1122345999999999984     456789999999999999999999999754

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.5e-31  Score=214.18  Aligned_cols=126  Identities=21%  Similarity=0.269  Sum_probs=93.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+ ..+.. .....+++..+++++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       107 Ey~~~g~L-~~~~~-~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~  181 (299)
T d1jpaa_         107 EFMENGSL-DSFLR-QNDGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  181 (299)
T ss_dssp             ECCTTEEH-HHHHH-TTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EecCCCcc-eeeec-cccCCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEECCCCcEEECCcccceEccCC
Confidence            44544443 33333 3445689999999999999999999998   9999999999999999999999999999876443


Q ss_pred             CCce----eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRT----FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~----~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ....    .....||+.|+|||.+....++.++|||||||++|||+| |+.||...
T Consensus       182 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~  237 (299)
T d1jpaa_         182 TSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM  237 (299)
T ss_dssp             --------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             CCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC
Confidence            2211    122347889999999999999999999999999999998 89998644

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=212.46  Aligned_cols=127  Identities=24%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+.. +. ......+++..+.+++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        87 mE~~~~g~L~~-~l-~~~~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  161 (285)
T d1u59a_          87 MEMAGGGPLHK-FL-VGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  161 (285)
T ss_dssp             EECCTTEEHHH-HH-TTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             EEeCCCCcHHH-Hh-hccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhcccc
Confidence            34444444433 32 23445789999999999999999999998   999999999999999999999999999988754


Q ss_pred             CCCce--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRT--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....  .....||+.|+|||++....++.++|||||||++|||+| |+.||...
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~  216 (285)
T d1u59a_         162 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  216 (285)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC
Confidence            43321  123357899999999998899999999999999999998 89999754

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=208.04  Aligned_cols=126  Identities=24%  Similarity=0.277  Sum_probs=103.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+.. +..  ....+++..+++++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||+++....
T Consensus        86 mE~~~~g~L~~-~l~--~~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~  159 (277)
T d1xbba_          86 MEMAELGPLNK-YLQ--QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  159 (277)
T ss_dssp             EECCTTEEHHH-HHH--HCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             EEcCCCCcHHH-HHh--hccCCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhccc
Confidence            45555444443 333  345689999999999999999999998   999999999999999999999999999987654


Q ss_pred             CCCce--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTRT--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .....  .....||+.|+|||.+.+..++.++|||||||++|||+| |+.||...
T Consensus       160 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~  214 (277)
T d1xbba_         160 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  214 (277)
T ss_dssp             TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             cccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC
Confidence            43322  223458999999999999999999999999999999998 89999744

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.7e-30  Score=212.51  Aligned_cols=122  Identities=23%  Similarity=0.266  Sum_probs=101.5

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+..   ...++...+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        87 E~~~gg~L~~~l~~---~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          87 DLMNGGDLHYHLSQ---HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             CCCCSCBHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             EecCCCcHHHHHHh---cccccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceeeecCCC
Confidence            44444444444432   35678889999999999999999999   9999999999999999999999999999876543


Q ss_pred             CCceeeeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..   ....||+.|+|||++.. ..++.++|||||||++|+|+||+.||...
T Consensus       161 ~~---~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  209 (364)
T d1omwa3         161 KP---HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  209 (364)
T ss_dssp             CC---CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             cc---cccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCC
Confidence            32   23459999999999864 56899999999999999999999999765

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=213.27  Aligned_cols=126  Identities=26%  Similarity=0.335  Sum_probs=105.9

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..||+.++.++..+..   ...++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        83 v~ey~~gg~L~~~~~~---~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~  156 (337)
T d1o6la_          83 VMEYANGGELFFHLSR---ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGI  156 (337)
T ss_dssp             EEECCTTCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             ceeccCCCchhhhhhc---ccCCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccc
Confidence            3456666655554433   34678888999999999999999999   99999999999999999999999999998654


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .... .....+||+.|+|||++.+..++.++|+||+||++|||++|+.||...
T Consensus       157 ~~~~-~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~  208 (337)
T d1o6la_         157 SDGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             CTTC-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCc-ccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCc
Confidence            3322 233456999999999999999999999999999999999999999754

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-30  Score=214.38  Aligned_cols=122  Identities=22%  Similarity=0.248  Sum_probs=104.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+|+.++.++..+...   +.++...++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       120 ~e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~  193 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             EECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             cccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeeccc
Confidence            3445555555555433   4689999999999999999999999   999999999999999999999999999987643


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .    .....||+.|+|||++.+..++.++|||||||++|+|+||+.||...
T Consensus       194 ~----~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  241 (350)
T d1rdqe_         194 R----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             C----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             c----cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence            2    22345999999999999999999999999999999999999999754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=7.1e-31  Score=212.23  Aligned_cols=124  Identities=29%  Similarity=0.411  Sum_probs=92.1

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc---CCCcEEEEecCCcee
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD---EFWTAKISDFGLAKL   91 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~dfg~~~~   91 (208)
                      .||+.++.++..+.   ....+++..+..++.|++.||.|||+.   +|+||||||+||++.   .++.+||+|||+++.
T Consensus        86 mE~~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~  159 (307)
T d1a06a_          86 MQLVSGGELFDRIV---EKGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM  159 (307)
T ss_dssp             ECCCCSCBHHHHHH---TCSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC-----
T ss_pred             EeccCCCcHHHhhh---cccCCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEE
Confidence            34454444444443   345799999999999999999999999   999999999999995   478899999999986


Q ss_pred             cCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           92 LMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        92 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ......  ....+||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       160 ~~~~~~--~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  212 (307)
T d1a06a_         160 EDPGSV--LSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE  212 (307)
T ss_dssp             ---------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccCCCe--eeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence            543322  23456999999999999999999999999999999999999999744

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.3e-31  Score=214.37  Aligned_cols=107  Identities=26%  Similarity=0.310  Sum_probs=94.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....+++..+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.....     ....||+.|+|
T Consensus       108 ~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~-----~~~~GT~~Y~A  179 (309)
T d1u5ra_         108 HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-----NSFVGTPYWMA  179 (309)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-----CCCCSCGGGCC
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCCC-----CccccCccccC
Confidence            346789999999999999999999999   9999999999999999999999999999765332     23459999999


Q ss_pred             hhhhhc---CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKN---TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~---~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||++.+   ..|+.++|||||||++|||++|+.||...
T Consensus       180 PE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~  217 (309)
T d1u5ra_         180 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (309)
T ss_dssp             HHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence            999853   45889999999999999999999999744

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.96  E-value=1.3e-30  Score=214.27  Aligned_cols=124  Identities=22%  Similarity=0.349  Sum_probs=102.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC--CCcEEEEecCCceecC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE--FWTAKISDFGLAKLLM   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~dfg~~~~~~   93 (208)
                      ||+.++.++..+..  ....+++..+..++.||+.||.|||+.   +|+||||||+|||++.  ++.+||+|||+++...
T Consensus       103 E~~~gg~L~~~l~~--~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~  177 (350)
T d1koaa2         103 EFMSGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  177 (350)
T ss_dssp             CCCCSCBHHHHHTC--TTSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECC
T ss_pred             EcCCCCCHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheecc
Confidence            34444444443322  345699999999999999999999999   9999999999999954  5789999999998865


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....  .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       178 ~~~~--~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         178 PKQS--VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             TTSC--EEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccc--cceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence            4332  34456999999999999999999999999999999999999999744

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-31  Score=209.74  Aligned_cols=126  Identities=18%  Similarity=0.212  Sum_probs=92.6

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+...+.  .....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        87 E~~~~g~l~~~~~--~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~  161 (273)
T d1mp8a_          87 ELCTLGELRSFLQ--VRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS  161 (273)
T ss_dssp             ECCTTEEHHHHHH--HTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred             EeccCCcHHhhhh--ccCCCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheeccCC
Confidence            4444444433322  3455789999999999999999999999   9999999999999999999999999999876544


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .........||+.|+|||.+....++.++|||||||++|||+| |..||...
T Consensus       162 ~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~  213 (273)
T d1mp8a_         162 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV  213 (273)
T ss_dssp             ---------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCC
Confidence            3333444568999999999999999999999999999999998 88888754

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-31  Score=215.00  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=104.3

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceec
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLL   92 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~   92 (208)
                      ||+.+|.+ ..+........+++..+..++.|++.||+|||+.   +|+||||||+|||++.   .+.+||+|||+++..
T Consensus        89 Ey~~gg~L-~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~  164 (335)
T d2ozaa1          89 ECLDGGEL-FSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET  164 (335)
T ss_dssp             ECCCSEEH-HHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             ECCCCCcH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccccceeeec
Confidence            34444444 4444444556799999999999999999999999   9999999999999975   567999999999876


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  .....||+.|+|||++.+..++.++||||+||++|+|+||+.||...
T Consensus       165 ~~~~~--~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~  216 (335)
T d2ozaa1         165 TSHNS--LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  216 (335)
T ss_dssp             CCCCC--CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEET
T ss_pred             cCCCc--cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCC
Confidence            54332  23446999999999999888999999999999999999999999765

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-30  Score=205.32  Aligned_cols=113  Identities=22%  Similarity=0.292  Sum_probs=90.7

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc--eeeeeecCCC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR--TFTLIRGTRG  108 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~g~~~  108 (208)
                      .....+++..+++++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++........  ......||+.
T Consensus       102 ~~~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~  178 (283)
T d1mqba_         102 EKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR  178 (283)
T ss_dssp             HTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGG
T ss_pred             cccccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCcc
Confidence            3456799999999999999999999998   9999999999999999999999999999876443222  2223457899


Q ss_pred             cCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          109 YMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       109 y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+|||++.+..++.++|||||||++|||++|..|+...
T Consensus       179 Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~  216 (283)
T d1mqba_         179 WTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE  216 (283)
T ss_dssp             GSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ccCHHHHccCCCCCcccccccHHHHHHHHhCCCCcccc
Confidence            99999999999999999999999999999987776544

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.96  E-value=3.2e-30  Score=212.01  Aligned_cols=125  Identities=23%  Similarity=0.344  Sum_probs=104.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEc--CCCcEEEEecCCceec
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMD--EFWTAKISDFGLAKLL   92 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~dfg~~~~~   92 (208)
                      .||+.++.++..+.  .....+++..++.++.||+.||+|||+.   +|+||||||+|||++  .++.+||+|||+++..
T Consensus       105 mE~~~gg~L~~~~~--~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~  179 (352)
T d1koba_         105 LEFLSGGELFDRIA--AEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKL  179 (352)
T ss_dssp             EECCCCCBHHHHTT--CTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             EEcCCCChHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceec
Confidence            44555555444322  2345689999999999999999999999   999999999999997  5788999999999887


Q ss_pred             CCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           93 MPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        93 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  .....||+.|+|||++.+..++.++||||+||++|+|+||+.||...
T Consensus       180 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  231 (352)
T d1koba_         180 NPDEI--VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  231 (352)
T ss_dssp             CTTSC--EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCc--eeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            54332  34456899999999999999999999999999999999999999744

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-29  Score=205.99  Aligned_cols=108  Identities=26%  Similarity=0.389  Sum_probs=96.6

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ....++...+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....    ....+||+.|+|
T Consensus        97 ~~~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~----~~~~~Gt~~Y~A  169 (316)
T d1fota_          97 KSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV----TYTLCGTPDYIA  169 (316)
T ss_dssp             HTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC----BCCCCSCTTTCC
T ss_pred             ccccccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEeccc----cccccCcccccC
Confidence            445677888889999999999999999   9999999999999999999999999999876432    223569999999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||++.+..++.++||||+||++|+|++|+.||...
T Consensus       170 PE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  204 (316)
T d1fota_         170 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  204 (316)
T ss_dssp             HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc
Confidence            99999999999999999999999999999999754

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=5.3e-30  Score=204.06  Aligned_cols=126  Identities=22%  Similarity=0.354  Sum_probs=97.0

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+.   ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++..+++|||.+.....
T Consensus        90 mE~~~g~~L~~~~~---~~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          90 MEYVDGVTLRDIVH---TEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EECCCEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EECCCCCEehhhhc---ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhhhhcc
Confidence            34444443333332   335789999999999999999999998   999999999999999999999999999876543


Q ss_pred             CCC--ceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQT--RTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  .......||+.|+|||++.+..++.++||||+||++|+|+||+.||...
T Consensus       164 ~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  217 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD  217 (277)
T ss_dssp             ---------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc
Confidence            322  1233456999999999999999999999999999999999999999754

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-30  Score=212.15  Aligned_cols=127  Identities=21%  Similarity=0.233  Sum_probs=102.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .+++.++.++..+.  .....+++..+++++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        89 ~e~~~~~~l~~~~~--~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          89 TQLMPFGCLLDYVR--EHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  163 (317)
T ss_dssp             EECCTTCBHHHHHH--HTSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTT
T ss_pred             EEeccCCccccccc--ccccCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceeccc
Confidence            34444555554433  3466789999999999999999999998   999999999999999999999999999987654


Q ss_pred             CCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           95 DQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        95 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      .... ......||+.|+|||++.+..++.++|||||||++|||+| |+.||...
T Consensus       164 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~  217 (317)
T d1xkka_         164 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  217 (317)
T ss_dssp             TCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             ccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCC
Confidence            3332 2233458999999999999999999999999999999998 78887644

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.3e-30  Score=206.45  Aligned_cols=116  Identities=20%  Similarity=0.274  Sum_probs=101.3

Q ss_pred             HHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeec
Q 042116           26 AVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRG  105 (208)
Q Consensus        26 ~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g  105 (208)
                      .+........+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....  .......|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~--~~~~~~~g  177 (305)
T d1blxa_         103 TYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTSVVV  177 (305)
T ss_dssp             HHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGG--GGGCCCCC
T ss_pred             hhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecchhhhhhhccc--ccCCCccc
Confidence            344555667889999999999999999999999   9999999999999999999999999998764322  22334569


Q ss_pred             CCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          106 TRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       106 ~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |+.|+|||++.+.+++.++||||+||++|||++|+.||...
T Consensus       178 T~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~  218 (305)
T d1blxa_         178 TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  218 (305)
T ss_dssp             CCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999999999999999754

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=200.47  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=99.1

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      .....+++..+++++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++..............+|+.|+
T Consensus        92 ~~~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~  168 (258)
T d1k2pa_          92 EMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWS  168 (258)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGC
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcC
Confidence            3456788999999999999999999998   9999999999999999999999999999876544433333455899999


Q ss_pred             chhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          111 APEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      |||.+....++.++||||||+++|||+| |+.||...
T Consensus       169 aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~  205 (258)
T d1k2pa_         169 PPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF  205 (258)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             CcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCC
Confidence            9999999999999999999999999998 79898754

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=203.04  Aligned_cols=124  Identities=25%  Similarity=0.354  Sum_probs=103.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC----cEEEEecCCce
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW----TAKISDFGLAK   90 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~dfg~~~   90 (208)
                      .||+.++.+...+..   ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++    .+|++|||+++
T Consensus        92 ~E~~~gg~L~~~i~~---~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          92 LELVAGGELFDFLAE---KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             EECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEcCCCccccchhcc---ccccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchhhhh
Confidence            455555555544433   34789999999999999999999999   999999999999998776    49999999998


Q ss_pred             ecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           91 LLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        91 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .......  .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       166 ~~~~~~~--~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  219 (293)
T d1jksa_         166 KIDFGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  219 (293)
T ss_dssp             ECTTSCB--CSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hcCCCcc--ccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC
Confidence            7644332  23345899999999999988999999999999999999999999754

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.9e-30  Score=205.09  Aligned_cols=128  Identities=26%  Similarity=0.257  Sum_probs=99.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEEeCCCCCcEEEcCCCcEEEEecCCc
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNEC-----EAPIIHCDIKPHNILMDEFWTAKISDFGLA   89 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~nill~~~~~~kl~dfg~~   89 (208)
                      .||+.++.+... ..   ...+++..+++++.|+|.||+|+|+.+     ..+|+||||||+|||++.++.+||+|||++
T Consensus        80 ~Ey~~~g~L~~~-l~---~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~  155 (303)
T d1vjya_          80 SDYHEHGSLFDY-LN---RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  155 (303)
T ss_dssp             EECCTTCBHHHH-HH---HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EecccCCCHHHH-Hh---cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcc
Confidence            344444434333 33   346899999999999999999999731     249999999999999999999999999999


Q ss_pred             eecCCCCCc---eeeeeecCCCcCchhhhhcCC------CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           90 KLLMPDQTR---TFTLIRGTRGYMAPEWSKNTP------ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        90 ~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~------~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +........   ......||+.|+|||++....      ++.++|||||||++|||+||..|+...
T Consensus       156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~  221 (303)
T d1vjya_         156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH  221 (303)
T ss_dssp             EEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBC
T ss_pred             ccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcc
Confidence            876543322   223456999999999987542      567899999999999999999887654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.6e-30  Score=209.56  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=93.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aP  112 (208)
                      ..+++..+++++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++........ ......+++.|+||
T Consensus       135 ~~l~~~~~~~i~~qi~~gl~ylH~~---~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aP  211 (301)
T d1lufa_         135 PPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  211 (301)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhcccC---CeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCH
Confidence            4588999999999999999999999   9999999999999999999999999999866443222 23345588999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCc-CCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRR-NMEI  145 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~-p~~~  145 (208)
                      |++....++.++|||||||++|||++|.. ||..
T Consensus       212 E~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~  245 (301)
T d1lufa_         212 ESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG  245 (301)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             HHHccCCCChhhhhccchhhHHHHHccCCCCCCC
Confidence            99999999999999999999999999965 5543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-30  Score=204.14  Aligned_cols=128  Identities=19%  Similarity=0.167  Sum_probs=104.1

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..+|+.++.+...+..  ..+.+++..+++++.|+|.||.|||++   +|+||||||+||+++.++.+||+|||+++...
T Consensus        88 v~e~~~~~~l~~~~~~--~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~  162 (273)
T d1u46a_          88 VTELAPLGSLLDRLRK--HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALP  162 (273)
T ss_dssp             EEECCTTCBHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             eeeeecCcchhhhhhc--ccCCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhhcc
Confidence            3555666655554443  345699999999999999999999998   99999999999999999999999999999875


Q ss_pred             CCCCce--eeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           94 PDQTRT--FTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        94 ~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ......  .....|+..|+|||.+.+..++.++||||||+++|||+| |+.||...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~  218 (273)
T d1u46a_         163 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  218 (273)
T ss_dssp             C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc
Confidence            443322  223457889999999999999999999999999999998 89998644

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-30  Score=205.67  Aligned_cols=107  Identities=30%  Similarity=0.427  Sum_probs=92.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-CCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-FWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ...+++..+..++.|++.||+|||+.   +|+||||||+||+++. ++.+||+|||+++......   .....||+.|+|
T Consensus       104 ~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~---~~~~~GT~~y~a  177 (273)
T d1xwsa_         104 RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV---YTDFDGTRVYSP  177 (273)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSC---BCCCCSCGGGSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECccccceeccccc---ccccccCCCcCC
Confidence            46789999999999999999999999   9999999999999985 4789999999998754322   234569999999


Q ss_pred             hhhhhcCCC-CccccchhHHHHHHHHHhcCcCCCC
Q 042116          112 PEWSKNTPI-SMKANVFNYGVVLLEIVCCRRNMEI  145 (208)
Q Consensus       112 PE~~~~~~~-~~~~Di~s~Gv~l~el~tg~~p~~~  145 (208)
                      ||++.+..+ +.++||||+||++|+|++|+.||..
T Consensus       178 PE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  212 (273)
T d1xwsa_         178 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH  212 (273)
T ss_dssp             HHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             HHHHcCCCCCCcccccccceeeehhHhhCCCCCCC
Confidence            999987665 5778999999999999999999964

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-29  Score=204.46  Aligned_cols=125  Identities=22%  Similarity=0.256  Sum_probs=104.4

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+.   ....++...+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus        82 mEy~~~g~L~~~i~---~~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~  155 (320)
T d1xjda_          82 MEYLNGGDLMYHIQ---SCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENML  155 (320)
T ss_dssp             EECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EeecCCCcHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhccc
Confidence            45555555444433   335678889999999999999999999   999999999999999999999999999986543


Q ss_pred             CCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus       156 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~  206 (320)
T d1xjda_         156 GDA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  206 (320)
T ss_dssp             TTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc-cccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence            322 223346999999999999999999999999999999999999999754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=202.89  Aligned_cols=112  Identities=28%  Similarity=0.311  Sum_probs=96.1

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      .....++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++........ ....+||+.|+
T Consensus        92 ~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~-~~~~~gt~~y~  167 (299)
T d1ua2a_          92 DNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA-YTHQVVTRWYR  167 (299)
T ss_dssp             TCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC-CCCSCCCCTTC
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCCccc-ccceecChhhc
Confidence            3456788889999999999999999999   9999999999999999999999999999765443222 22345899999


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+... .++.++||||+||++|||++|+.||...
T Consensus       168 aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~  204 (299)
T d1ua2a_         168 APELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD  204 (299)
T ss_dssp             CHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC
Confidence            99988654 5799999999999999999999999654

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.95  E-value=1.7e-28  Score=195.42  Aligned_cols=124  Identities=23%  Similarity=0.352  Sum_probs=102.3

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++.+...+ .  ....+++..+..++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        89 mE~~~~g~L~~~l-~--~~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  162 (277)
T d1phka_          89 FDLMKKGELFDYL-T--EKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  162 (277)
T ss_dssp             EECCTTCBHHHHH-H--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             EEcCCCchHHHHH-H--hcCCCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccchheeEccC
Confidence            3555555444444 3  245789999999999999999999999   999999999999999999999999999988754


Q ss_pred             CCCceeeeeecCCCcCchhhhhc------CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKN------TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  .....||+.|+|||.+.+      ..++.++||||+||++|+|++|+.||...
T Consensus       163 ~~~--~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~  218 (277)
T d1phka_         163 GEK--LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR  218 (277)
T ss_dssp             TCC--BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCc--eeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCC
Confidence            332  233568999999998853      34678999999999999999999999754

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.4e-28  Score=196.24  Aligned_cols=114  Identities=25%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC---CCcEEEEecCCceecCCCCCc------eeee
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE---FWTAKISDFGLAKLLMPDQTR------TFTL  102 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~dfg~~~~~~~~~~~------~~~~  102 (208)
                      ....++...+..++.|++.||+|||+.   +|+||||||+||+++.   +..++++|||+++........      ....
T Consensus        96 ~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~  172 (299)
T d1ckia_          96 CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN  172 (299)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCS
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCC
Confidence            456789999999999999999999999   9999999999998753   557999999999886543321      1233


Q ss_pred             eecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      ..||+.|+|||.+.+..++.++|||||||++|||++|+.||.....
T Consensus       173 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~  218 (299)
T d1ckia_         173 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA  218 (299)
T ss_dssp             CCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-
T ss_pred             cCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccch
Confidence            4699999999999998999999999999999999999999976533

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.95  E-value=4.3e-28  Score=194.52  Aligned_cols=124  Identities=15%  Similarity=0.146  Sum_probs=102.6

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC-----CCcEEEEecCCceecCCC
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE-----FWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----~~~~kl~dfg~~~~~~~~   95 (208)
                      ++++..+.. .....++...+..++.|++.||.|||+.   +|+||||||+||+++.     ++.+||+|||+++.....
T Consensus        84 ~~~l~~~~~-~~~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~  159 (293)
T d1csna_          84 GPSLEDLLD-LCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  159 (293)
T ss_dssp             CCBHHHHHH-HTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             CCCHHHHHH-hhccchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEcccC
Confidence            445555543 3445789999999999999999999999   9999999999999964     567999999999876432


Q ss_pred             CCc------eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCCCC
Q 042116           96 QTR------TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEIDPS  148 (208)
Q Consensus        96 ~~~------~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~  148 (208)
                      ...      ......||+.|+|||.+.+..++.++||||||+++|||++|+.||.....
T Consensus       160 ~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~  218 (293)
T d1csna_         160 VTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  218 (293)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS
T ss_pred             ccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccc
Confidence            211      12345699999999999999999999999999999999999999986533

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-29  Score=200.92  Aligned_cols=124  Identities=23%  Similarity=0.329  Sum_probs=101.4

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcC--CCcEEEEecCCceecC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDE--FWTAKISDFGLAKLLM   93 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~dfg~~~~~~   93 (208)
                      ||+.++.++.. ... ....+++..+..++.|++.||.|||+.   +|+||||||+|||++.  ...+||+|||+++...
T Consensus        81 E~~~gg~L~~~-i~~-~~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~  155 (321)
T d1tkia_          81 EFISGLDIFER-INT-SAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             CCCCCCBHHHH-HTS-SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             ecCCCCcHHHH-HHh-cCCCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhccc
Confidence            34444444433 322 234689999999999999999999999   9999999999999975  4579999999998764


Q ss_pred             CCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ...  ......+|+.|+|||...+..++.++||||+||++|+|++|+.||...
T Consensus       156 ~~~--~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~  206 (321)
T d1tkia_         156 PGD--NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             TTC--EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cCC--cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCC
Confidence            332  234456899999999999988999999999999999999999999754

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.6e-29  Score=198.98  Aligned_cols=120  Identities=23%  Similarity=0.272  Sum_probs=101.2

Q ss_pred             cchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeee
Q 042116           23 QFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTL  102 (208)
Q Consensus        23 ~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  102 (208)
                      .+..+........+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||.++....... ....
T Consensus        86 ~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~-~~~~  161 (298)
T d1gz8a_          86 DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR-TYTH  161 (298)
T ss_dssp             EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB-CTTC
T ss_pred             chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCCcc-ccee
Confidence            334455556677899999999999999999999999   999999999999999999999999999987643322 2233


Q ss_pred             eecCCCcCchhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          103 IRGTRGYMAPEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       103 ~~g~~~y~aPE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ..||+.|+|||.+.... ++.++|+||+||++|+|++|+.||...
T Consensus       162 ~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~  206 (298)
T d1gz8a_         162 EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD  206 (298)
T ss_dssp             CBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC
Confidence            45899999999877655 478999999999999999999999754

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-29  Score=200.84  Aligned_cols=107  Identities=29%  Similarity=0.306  Sum_probs=92.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...+++..+++++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.......  .....||..|+||
T Consensus       121 ~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~--~~~~~gt~~y~aP  195 (309)
T d1fvra_         121 ASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK--KTMGRLPVRWMAI  195 (309)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC--C----CCTTTCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCCceEEcccccccccccccc--ccceecCCcccch
Confidence            46789999999999999999999999   999999999999999999999999999976532222  2234589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCc-CCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRR-NME  144 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~-p~~  144 (208)
                      |.+....++.++|||||||++|||++|.. ||.
T Consensus       196 E~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~  228 (309)
T d1fvra_         196 ESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC  228 (309)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             HHhccCCCCccceeehhHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999999765 554

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-29  Score=201.10  Aligned_cols=111  Identities=25%  Similarity=0.231  Sum_probs=96.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc-eeeeeecCCCcCc
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMA  111 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~a  111 (208)
                      ...+++..+++++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++........ ......+++.|+|
T Consensus       129 ~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  205 (299)
T d1fgka_         129 EEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA  205 (299)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhh
Confidence            35689999999999999999999999   9999999999999999999999999999876443322 2233458889999


Q ss_pred             hhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116          112 PEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                      ||.+.++.++.++||||||+++|||++ |..||...
T Consensus       206 PE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~  241 (299)
T d1fgka_         206 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  241 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             hhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC
Confidence            999999999999999999999999998 67777533

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.7e-29  Score=200.16  Aligned_cols=128  Identities=23%  Similarity=0.253  Sum_probs=103.4

Q ss_pred             ceEEeCCCCcchHHHHhh---------------hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCC
Q 042116           14 GCEVKGKRKQFGAVVRRR---------------ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEF   78 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~---------------~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~   78 (208)
                      ..||+.++.+...+....               ....+++..+++++.||+.||+|||++   +++||||||+||+++.+
T Consensus       105 vmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~~~~  181 (311)
T d1t46a_         105 ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHG  181 (311)
T ss_dssp             EEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETT
T ss_pred             EEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeeccccccccccccc
Confidence            445666655555544332               234688999999999999999999999   99999999999999999


Q ss_pred             CcEEEEecCCceecCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCC
Q 042116           79 WTAKISDFGLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNME  144 (208)
Q Consensus        79 ~~~kl~dfg~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~  144 (208)
                      +.+|++|||.++........ ......||+.|+|||.+....++.++|||||||++|||+|+..|+.
T Consensus       182 ~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~  248 (311)
T d1t46a_         182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY  248 (311)
T ss_dssp             TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             CcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCC
Confidence            99999999999876543332 2234568999999999999999999999999999999999555544

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-28  Score=195.27  Aligned_cols=123  Identities=26%  Similarity=0.294  Sum_probs=96.1

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPD   95 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~   95 (208)
                      ||+.++.+.. +........+++..+++++.||+.||.|||+.   +|+||||||+||+++.++.+|++|||+++.....
T Consensus        81 ey~~~g~L~~-~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~  156 (262)
T d1byga_          81 EYMAKGSLVD-YLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  156 (262)
T ss_dssp             CCCTTEEHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred             eccCCCCHHH-HHHhcCCCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCCC
Confidence            3444444444 44445556789999999999999999999998   9999999999999999999999999999865332


Q ss_pred             CCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHh-cCcCCCCC
Q 042116           96 QTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVC-CRRNMEID  146 (208)
Q Consensus        96 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~t-g~~p~~~~  146 (208)
                          .....++..|+|||++.+..++.++||||||+++|||+| |+.||...
T Consensus       157 ----~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~  204 (262)
T d1byga_         157 ----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  204 (262)
T ss_dssp             ---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred             ----CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCC
Confidence                223347889999999999999999999999999999998 67776543

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=197.98  Aligned_cols=127  Identities=21%  Similarity=0.276  Sum_probs=102.5

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .||+.++ ++..+. .......++..+++++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       108 ~E~~~~g-~l~~~~-~~~~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~  182 (311)
T d1r0pa_         108 LPYMKHG-DLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  182 (311)
T ss_dssp             EECCTTC-BHHHHH-HCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTT
T ss_pred             EEEeecC-chhhhh-ccccccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhccc
Confidence            4444444 333333 33555677888999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCc---eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTR---TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....   ......||..|+|||.+....++.++||||||+++|||+||..||...
T Consensus       183 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~  237 (311)
T d1r0pa_         183 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  237 (311)
T ss_dssp             TTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-
T ss_pred             cccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCC
Confidence            3221   112345889999999999999999999999999999999988888654

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=192.31  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=96.2

Q ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCc---eeeeeecC
Q 042116           30 RRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTR---TFTLIRGT  106 (208)
Q Consensus        30 ~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~g~  106 (208)
                      .......+...+..++.|++.||.|||+.   +|+||||||+|||++.++.+|++|||+++........   ......||
T Consensus       108 ~~~~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT  184 (318)
T d3blha1         108 SNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVT  184 (318)
T ss_dssp             TCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSC
T ss_pred             hhcccccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecC
Confidence            44566788899999999999999999999   9999999999999999999999999999876432221   12234589


Q ss_pred             CCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          107 RGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       107 ~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.|+|||.+.+. .++.++||||+||++|+|++|+.||...
T Consensus       185 ~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~  225 (318)
T d3blha1         185 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  225 (318)
T ss_dssp             GGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC
Confidence            999999998754 6899999999999999999999999743

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-28  Score=199.52  Aligned_cols=119  Identities=27%  Similarity=0.299  Sum_probs=98.6

Q ss_pred             cchHHHH-hhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCcee
Q 042116           23 QFGAVVR-RRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        23 ~~~~l~~-~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      ++..+.. ......+++..+..++.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||+++.......  .
T Consensus       105 ~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~--~  179 (350)
T d1q5ka_         105 VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP--N  179 (350)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSC--C
T ss_pred             cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhccCCcc--c
Confidence            3334433 23556799999999999999999999998   999999999999999775 899999999987644332  2


Q ss_pred             eeeecCCCcCchhhhhc-CCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKN-TPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~-~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....|+..|+|||.+.+ ..++.++||||+||++|||++|+.||...
T Consensus       180 ~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~  226 (350)
T d1q5ka_         180 VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD  226 (350)
T ss_dssp             CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             ccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCC
Confidence            23458999999998764 46899999999999999999999999754

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8e-28  Score=197.02  Aligned_cols=126  Identities=22%  Similarity=0.320  Sum_probs=102.3

Q ss_pred             ceEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecC
Q 042116           14 GCEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLM   93 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~   93 (208)
                      ..++..++ ++..+..   ...+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        88 l~~~~~~g-~L~~~l~---~~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~  160 (345)
T d1pmea_          88 LVTHLMGA-DLYKLLK---TQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD  160 (345)
T ss_dssp             EEEECCCE-EHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEeecCC-chhhhhh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeecc
Confidence            33555544 4444443   34689999999999999999999999   99999999999999999999999999998764


Q ss_pred             CCCCc--eeeeeecCCCcCchhhhh-cCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           94 PDQTR--TFTLIRGTRGYMAPEWSK-NTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        94 ~~~~~--~~~~~~g~~~y~aPE~~~-~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      .....  ......||+.|+|||.+. ...++.++||||+||++|+|++|+.||...
T Consensus       161 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~  216 (345)
T d1pmea_         161 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK  216 (345)
T ss_dssp             GGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCC
Confidence            33221  123456899999999884 456789999999999999999999999754

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-28  Score=194.78  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=103.1

Q ss_pred             ceEEeCCCCcchHHHHhhh-------ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEec
Q 042116           14 GCEVKGKRKQFGAVVRRRE-------NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDF   86 (208)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~df   86 (208)
                      ..+|+.+|.+...+.....       ...+++..+.+++.|+|+||.|||+.   +|+||||||+|||++.++.+||+||
T Consensus       101 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~Kl~DF  177 (308)
T d1p4oa_         101 IMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF  177 (308)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCT
T ss_pred             EEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEEEeec
Confidence            4566666666555543321       23568899999999999999999998   9999999999999999999999999


Q ss_pred             CCceecCCCCCc-eeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcC-cCCC
Q 042116           87 GLAKLLMPDQTR-TFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCR-RNME  144 (208)
Q Consensus        87 g~~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~-~p~~  144 (208)
                      |+++........ ......+|+.|+|||.+.+..++.++||||||+++|||+||. .||.
T Consensus       178 Gla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~  237 (308)
T d1p4oa_         178 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ  237 (308)
T ss_dssp             TCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred             ccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCC
Confidence            999865332221 122335789999999999999999999999999999999996 5554

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=4.8e-28  Score=193.33  Aligned_cols=112  Identities=24%  Similarity=0.282  Sum_probs=93.5

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcC
Q 042116           31 RENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYM  110 (208)
Q Consensus        31 ~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~  110 (208)
                      .....++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||.+......... .....+++.|+
T Consensus        92 ~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~~~y~  167 (286)
T d1ob3a_          92 VCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK-YTHEIVTLWYR  167 (286)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----------CCCTTC
T ss_pred             hhcCCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccCccc-cceecccchhh
Confidence            3457899999999999999999999998   9999999999999999999999999999776433222 22335889999


Q ss_pred             chhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          111 APEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       111 aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |||.+.+. .++.++|+||+||++|||++|+.||...
T Consensus       168 ~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~  204 (286)
T d1ob3a_         168 APDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (286)
T ss_dssp             CHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC
Confidence            99998654 5689999999999999999999999744

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=193.21  Aligned_cols=113  Identities=26%  Similarity=0.301  Sum_probs=95.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCchh
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAPE  113 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aPE  113 (208)
                      ..........++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..............|++.|++||
T Consensus       124 ~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe  200 (322)
T d1vzoa_         124 ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPD  200 (322)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhH
Confidence            4566778888999999999999999   9999999999999999999999999999876544443344456899999999


Q ss_pred             hhhcC--CCCccccchhHHHHHHHHHhcCcCCCCCCCC
Q 042116          114 WSKNT--PISMKANVFNYGVVLLEIVCCRRNMEIDPSK  149 (208)
Q Consensus       114 ~~~~~--~~~~~~Di~s~Gv~l~el~tg~~p~~~~~~~  149 (208)
                      .+.+.  .++.++||||+||++|+|++|+.||......
T Consensus       201 ~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~  238 (322)
T d1vzoa_         201 IVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK  238 (322)
T ss_dssp             HHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC
T ss_pred             HhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH
Confidence            98754  3678999999999999999999999766433

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=190.19  Aligned_cols=116  Identities=25%  Similarity=0.343  Sum_probs=99.2

Q ss_pred             CCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCcee
Q 042116           21 RKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTF  100 (208)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~  100 (208)
                      +.++..+..   ...++...+..++.|++.||.|||+.   +|+||||||+|||++.++.+|++|||+++......    
T Consensus       106 ~~~l~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~----  175 (346)
T d1cm8a_         106 GTDLGKLMK---HEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM----  175 (346)
T ss_dssp             SEEHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSSC----
T ss_pred             cccHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceeccCCcc----
Confidence            345555543   35799999999999999999999999   99999999999999999999999999998764332    


Q ss_pred             eeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          101 TLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       101 ~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ....||+.|+|||.+.+. .++.++||||+||++|+|++|+.||...
T Consensus       176 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~  222 (346)
T d1cm8a_         176 TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  222 (346)
T ss_dssp             CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC
Confidence            234589999999998764 5689999999999999999999999754

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.9e-27  Score=186.34  Aligned_cols=111  Identities=18%  Similarity=0.262  Sum_probs=95.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc
Q 042116           32 ENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA  111 (208)
Q Consensus        32 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a  111 (208)
                      ..+.++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||.++........ .....++..|+|
T Consensus        94 ~~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~-~~~~~~~~~~~~  169 (292)
T d1unla_          94 CNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC-YSAEVVTLWYRP  169 (292)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC-CCSCCSCGGGCC
T ss_pred             cccccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCCCcc-ceeeccccchhh
Confidence            456788999999999999999999999   9999999999999999999999999999876543322 223346788999


Q ss_pred             hhhhhcCC-CCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          112 PEWSKNTP-ISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       112 PE~~~~~~-~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      ||.+.... ++.++||||+||++|+|++|+.||...
T Consensus       170 pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~  205 (292)
T d1unla_         170 PDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  205 (292)
T ss_dssp             HHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC
T ss_pred             hhHhccCCCCCchhhccccchHHHHHhhCCCCCCCC
Confidence            99887655 689999999999999999999998644

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.93  E-value=2.1e-26  Score=187.10  Aligned_cols=108  Identities=19%  Similarity=0.335  Sum_probs=93.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCC-cEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           34 KEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFW-TAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        34 ~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      +.++...+..++.||+.||+|||+.   +|+||||||+|||++.++ .+||+|||+++.......  .....+|+.|+||
T Consensus       124 ~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~--~~~~~~t~~y~aP  198 (328)
T d3bqca1         124 QTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--YNVRVASRYFKGP  198 (328)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC--CCSCCSCGGGCCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCCCc--ccccccCccccCc
Confidence            4689999999999999999999999   999999999999998655 589999999987654332  2344589999999


Q ss_pred             hhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |.+.+. .++.++||||+||++|++++|+.||...
T Consensus       199 E~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         199 ELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             HHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccCCCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence            998765 4799999999999999999999999755

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.2e-25  Score=181.91  Aligned_cols=124  Identities=24%  Similarity=0.246  Sum_probs=102.8

Q ss_pred             EEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEEeCCCCCcEEEcCCC------cEEEEecCC
Q 042116           16 EVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHN-ECEAPIIHCDIKPHNILMDEFW------TAKISDFGL   88 (208)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~-~~~~~iiHrdlk~~nill~~~~------~~kl~dfg~   88 (208)
                      .++..................+...+..++.|++.||+|||+ .   +|+||||||+|||++.++      .++++|||.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~  178 (362)
T d1q8ya_         102 VFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSPENLIQIKIADLGN  178 (362)
T ss_dssp             EECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETTTTEEEEEECCCTT
T ss_pred             eecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCcccccceeeEeeccc
Confidence            344455566666777788899999999999999999999998 5   999999999999997654      389999999


Q ss_pred             ceecCCCCCceeeeeecCCCcCchhhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           89 AKLLMPDQTRTFTLIRGTRGYMAPEWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        89 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      +.......    ....||+.|+|||.+....++.++|+||+||++++|++|+.||...
T Consensus       179 s~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~  232 (362)
T d1q8ya_         179 ACWYDEHY----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD  232 (362)
T ss_dssp             CEETTBCC----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             cccccccc----ccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCC
Confidence            98653322    2345899999999999999999999999999999999999999765

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.8e-25  Score=181.58  Aligned_cols=109  Identities=28%  Similarity=0.268  Sum_probs=89.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCch
Q 042116           33 NKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMAP  112 (208)
Q Consensus        33 ~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~aP  112 (208)
                      ...++...++.++.|++.||.|||+.   +|+||||||+|||++.++..|++|||+++......  ......+|+.|+||
T Consensus       113 ~~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~--~~~~~~~t~~y~aP  187 (355)
T d2b1pa1         113 QMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAP  187 (355)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCTTCCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhhcccccc--ccccccccccccCh
Confidence            35688999999999999999999999   99999999999999999999999999987654322  23344589999999


Q ss_pred             hhhhcCCCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116          113 EWSKNTPISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus       113 E~~~~~~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                      |++.+..++.++||||+||++++|++|+.||...
T Consensus       188 E~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~  221 (355)
T d2b1pa1         188 EVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_dssp             HHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhhcCCCCCCCcccccccchHHHHhhCCCCCCCC
Confidence            9999999999999999999999999999999754

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-25  Score=182.62  Aligned_cols=121  Identities=26%  Similarity=0.310  Sum_probs=96.2

Q ss_pred             eEEeCCCCcchHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCC
Q 042116           15 CEVKGKRKQFGAVVRRRENKEKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMP   94 (208)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~   94 (208)
                      .++.. ++++..+..   ...++...+..++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||++.....
T Consensus       101 ~~~~~-gg~L~~~~~---~~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1         101 VTHLM-GADLNNIVK---CQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             EEECC-SEEHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             EEeec-CCchhhhcc---cccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhcccCc
Confidence            44443 445555543   35799999999999999999999999   999999999999999999999999999865422


Q ss_pred             CCCceeeeeecCCCcCchhhhhcC-CCCccccchhHHHHHHHHHhcCcCCCCC
Q 042116           95 DQTRTFTLIRGTRGYMAPEWSKNT-PISMKANVFNYGVVLLEIVCCRRNMEID  146 (208)
Q Consensus        95 ~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~Di~s~Gv~l~el~tg~~p~~~~  146 (208)
                          ......|++.|+|||...+. .++.++||||+||++|+|++|+.||...
T Consensus       174 ----~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~  222 (348)
T d2gfsa1         174 ----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  222 (348)
T ss_dssp             ----GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ----ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC
Confidence                22234588999999987665 4588999999999999999999999754

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.42  E-value=3.2e-14  Score=105.92  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCCcEEEcCCCcEEEEecCCceecCCCCCceeeeeecCCCcCc---
Q 042116           35 EKESNLGLLLILPQPSCNVYLHNECEAPIIHCDIKPHNILMDEFWTAKISDFGLAKLLMPDQTRTFTLIRGTRGYMA---  111 (208)
Q Consensus        35 ~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~g~~~y~a---  111 (208)
                      .++......++.|++.|+.|||+.   +|+||||||+|||++.+ .++++|||.++.........         |..   
T Consensus        99 ~l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~~~~~~---------~l~rd~  165 (191)
T d1zara2          99 RVRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGEEGWRE---------ILERDV  165 (191)
T ss_dssp             GCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEECCCTTCEETTSTTHHH---------HHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEEECCCcccCCCCCcHH---------HHHHHH
Confidence            345555668999999999999999   99999999999999865 58999999997753322211         111   


Q ss_pred             ---hhhhhcCCCCccccchhHHH
Q 042116          112 ---PEWSKNTPISMKANVFNYGV  131 (208)
Q Consensus       112 ---PE~~~~~~~~~~~Di~s~Gv  131 (208)
                         .+.+ ...|+.++|+||..-
T Consensus       166 ~~~~~~f-~r~y~~~~d~~s~~~  187 (191)
T d1zara2         166 RNIITYF-SRTYRTEKDINSAID  187 (191)
T ss_dssp             HHHHHHH-HHHHCCCCCHHHHHH
T ss_pred             HHHHHHH-cCCCCCcccHHHHHH
Confidence               1122 245678899999654

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.89  E-value=0.0042  Score=47.69  Aligned_cols=32  Identities=25%  Similarity=0.223  Sum_probs=27.9

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.++||+|+.+.||+++.+...-++||+.+..
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhcccccceeEeccccccc
Confidence            44899999999999999987778999998753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.26  E-value=0.018  Score=42.52  Aligned_cols=30  Identities=20%  Similarity=0.234  Sum_probs=25.5

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .++|+|+.+.||+++.++...|+||+.+..
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhccc
Confidence            489999999999999876677999987654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=93.22  E-value=0.015  Score=42.75  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=25.6

Q ss_pred             CeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           62 PIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        62 ~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      .++|+|+.|.||+++.+....|+||+.+..
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            489999999999999876678999987644

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.093  Score=40.17  Aligned_cols=30  Identities=23%  Similarity=0.191  Sum_probs=24.2

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +.+++|+|+.+.||+++.+  ..++||+-+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            4578999999999999754  45789987754

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=89.60  E-value=0.091  Score=41.43  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=26.1

Q ss_pred             CCCeEEeCCCCCcEEEcCCCcEEEEecCCcee
Q 042116           60 EAPIIHCDIKPHNILMDEFWTAKISDFGLAKL   91 (208)
Q Consensus        60 ~~~iiHrdlk~~nill~~~~~~kl~dfg~~~~   91 (208)
                      +..++|+|+.+.||+++.+ .++|+||..+..
T Consensus       222 ~~~LiHGDl~~gNIlv~~~-~~~vID~E~a~~  252 (392)
T d2pula1         222 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  252 (392)
T ss_dssp             CCEEECSCCCGGGEEECSS-CEEECCCTTCEE
T ss_pred             CcceeccCCcCCceeEcCC-ceEEechhhccc
Confidence            3479999999999999876 489999987754