Query 042117
Match_columns 122
No_of_seqs 107 out of 661
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_I Photosystem 1 reaction 57.0 9.5 0.00032 20.7 2.5 19 2-20 8-26 (38)
2 2wsc_I Photosystem I reaction 55.9 0.94 3.2E-05 25.0 -1.7 22 1-22 1-22 (40)
3 3ghg_C Fibrinogen gamma chain; 54.0 13 0.00044 30.1 4.0 31 90-120 25-55 (411)
4 3ghg_B Fibrinogen beta chain; 51.2 15 0.00051 30.2 4.0 31 90-120 82-112 (461)
5 2akf_A Coronin-1A; coiled coil 48.3 27 0.00091 17.8 3.9 24 99-122 9-32 (32)
6 1jy2_P Fibrinogen gamma-B chai 40.8 26 0.0009 19.8 2.8 22 90-111 25-46 (48)
7 3lw5_I PSI-I, photosystem I re 38.5 2.4 8.3E-05 21.9 -1.7 20 1-20 1-20 (30)
8 1m1j_C Fibrinogen gamma chain; 36.2 36 0.0012 27.4 4.0 31 90-120 25-55 (409)
9 2pnv_A Small conductance calci 30.0 73 0.0025 17.5 3.9 28 94-121 14-41 (43)
10 1m1j_B Fibrinogen beta chain; 25.0 71 0.0024 26.1 4.0 29 91-119 88-116 (464)
11 2aze_B Transcription factor E2 24.3 82 0.0028 20.4 3.5 24 94-117 18-41 (106)
12 4gc0_A D-xylose-proton symport 22.4 26 0.00089 26.7 0.9 14 69-82 456-469 (491)
No 1
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=57.01 E-value=9.5 Score=20.68 Aligned_cols=19 Identities=16% Similarity=-0.038 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHhHhhHHH
Q 042117 2 SVQDVYLNCSVGVALPVYS 20 (122)
Q Consensus 2 s~~~~~l~~~ig~~yPay~ 20 (122)
|++.+++..++|.+.||..
T Consensus 8 ~~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHH
Confidence 5788899999999999974
No 2
>2wsc_I Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_I* 2wsf_I*
Probab=55.88 E-value=0.94 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.7
Q ss_pred CCchhHHHHHHHHhHhhHHHHH
Q 042117 1 MSVQDVYLNCSVGVALPVYSTF 22 (122)
Q Consensus 1 ms~~~~~l~~~ig~~yPay~S~ 22 (122)
||++.+++..++|.+.||..=-
T Consensus 1 ~s~LPsIfVPlVGLvfPAi~Ma 22 (40)
T 2wsc_I 1 MINLPSLFVPLVGLLFPAVAMA 22 (40)
T ss_dssp CCCCCTTTTCCCCCHHHHHHHH
T ss_pred CCCCcchHHhHHHHHHHHHHHH
Confidence 7888899999999999997643
No 3
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.04 E-value=13 Score=30.09 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.9
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042117 90 LSPFLLRCQAKADKLKATTHAKFDQLTAITQ 120 (122)
Q Consensus 90 i~p~l~~~e~~ID~~l~~~~~~~~~~~~~~~ 120 (122)
|+-++.+||..+|+-|..+++.+.++...|.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts 55 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTS 55 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhh
Confidence 5667889999999999999999999977664
No 4
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=51.25 E-value=15 Score=30.17 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=27.2
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042117 90 LSPFLLRCQAKADKLKATTHAKFDQLTAITQ 120 (122)
Q Consensus 90 i~p~l~~~e~~ID~~l~~~~~~~~~~~~~~~ 120 (122)
|+-+|.+||..+|+-|..+++.+.++...|.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts 112 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSS 112 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhH
Confidence 5667889999999999999999999987664
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=48.30 E-value=27 Score=17.82 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 042117 99 AKADKLKATTHAKFDQLTAITQAK 122 (122)
Q Consensus 99 ~~ID~~l~~~~~~~~~~~~~~~~~ 122 (122)
...+.++..+.++++.+.+.-|||
T Consensus 9 r~l~~ivq~lq~r~drle~tvqak 32 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEETVQAK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566777888889999888887
No 6
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=40.79 E-value=26 Score=19.83 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=18.1
Q ss_pred hchhhhhhhHHHHHHHHHHHHH
Q 042117 90 LSPFLLRCQAKADKLKATTHAK 111 (122)
Q Consensus 90 i~p~l~~~e~~ID~~l~~~~~~ 111 (122)
|+.++++|+..+|+-|..+++-
T Consensus 25 iadfL~~Yq~~vd~dL~~lE~~ 46 (48)
T 1jy2_P 25 IADFLNNYQTSVDKDLRTLEGI 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchhhHHHHHHHH
Confidence 5668889999999988887764
No 7
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=38.49 E-value=2.4 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHHhHhhHHH
Q 042117 1 MSVQDVYLNCSVGVALPVYS 20 (122)
Q Consensus 1 ms~~~~~l~~~ig~~yPay~ 20 (122)
|..+.+++..++|.+.||..
T Consensus 1 ~~~LPsi~VPlVGlvfPai~ 20 (30)
T 3lw5_I 1 MINLPSLFVPLVGLLFPAVA 20 (30)
T ss_dssp CCCCCTTTTCCCCCHHHHHH
T ss_pred CCCCcchHHhHHHHHHHHHH
Confidence 56677788888999999864
No 8
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.23 E-value=36 Score=27.37 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=26.5
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042117 90 LSPFLLRCQAKADKLKATTHAKFDQLTAITQ 120 (122)
Q Consensus 90 i~p~l~~~e~~ID~~l~~~~~~~~~~~~~~~ 120 (122)
|+-++.++|..+|+-+..+++.++++...|.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts 55 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTG 55 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999999887765
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.00 E-value=73 Score=17.46 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 042117 94 LLRCQAKADKLKATTHAKFDQLTAITQA 121 (122)
Q Consensus 94 l~~~e~~ID~~l~~~~~~~~~~~~~~~~ 121 (122)
+....+.+++-+..+.+|++++.+.=||
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788999999999999998876554
No 10
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.02 E-value=71 Score=26.11 Aligned_cols=29 Identities=7% Similarity=0.163 Sum_probs=23.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 042117 91 SPFLLRCQAKADKLKATTHAKFDQLTAIT 119 (122)
Q Consensus 91 ~p~l~~~e~~ID~~l~~~~~~~~~~~~~~ 119 (122)
.-+|.++++.||+-+..+++++.++...|
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 44567999999999999999999987544
No 11
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.32 E-value=82 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 042117 94 LLRCQAKADKLKATTHAKFDQLTA 117 (122)
Q Consensus 94 l~~~e~~ID~~l~~~~~~~~~~~~ 117 (122)
+...|+.+|+.+..+...++.+++
T Consensus 18 L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 18 LQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999988875
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=22.41 E-value=26 Score=26.70 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=10.5
Q ss_pred HHHHHhhCCCcchH
Q 042117 69 SFLIWLQLPSTDGA 82 (122)
Q Consensus 69 ~fl~wL~~P~~~GA 82 (122)
..++|+..|+|+|-
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 34567889999983
Done!