Query 042117
Match_columns 122
No_of_seqs 107 out of 661
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 04:38:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042117.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042117hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 36.6 13 0.00096 17.0 2.1 19 5-23 4-22 (27)
2 d1gnwa1 a.45.1.1 (A:86-211) Cl 29.2 51 0.0037 19.6 4.9 37 81-117 29-67 (126)
3 d2csba4 a.60.2.4 (A:465-519) T 22.2 25 0.0018 18.4 1.9 23 17-39 1-23 (55)
4 d2azeb1 e.63.1.2 (B:201-301) T 18.8 60 0.0044 19.3 3.5 25 94-118 13-37 (101)
5 d1iiea_ a.109.1.1 (A:) Class I 16.2 41 0.003 19.3 2.1 14 32-45 47-60 (75)
6 d2elca2 c.27.1.1 (A:66-329) An 14.0 1.1E+02 0.008 19.9 4.4 25 97-121 238-264 (264)
7 d1sffa_ c.67.1.4 (A:) 4-aminob 12.2 62 0.0045 23.2 2.7 26 90-115 398-423 (425)
8 d1jb0i_ f.23.17.1 (I:) Subunit 12.1 78 0.0057 15.5 2.2 17 2-18 8-24 (38)
9 d1z7da1 c.67.1.4 (A:7-410) Orn 12.1 63 0.0046 23.1 2.7 26 90-115 378-403 (404)
10 d2e74d2 f.23.12.1 (D:12-45) IS 11.5 91 0.0066 14.8 2.8 18 5-22 14-31 (34)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=36.63 E-value=13 Score=17.04 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=13.8
Q ss_pred hHHHHHHHHhHhhHHHHHH
Q 042117 5 DVYLNCSVGVALPVYSTFK 23 (122)
Q Consensus 5 ~~~l~~~ig~~yPay~S~k 23 (122)
+.+...+.|..|.||+.+|
T Consensus 4 gli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 4455566788899998875
No 2
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.23 E-value=51 Score=19.60 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=26.4
Q ss_pred hHHHHHHHhhchhhh--hhhHHHHHHHHHHHHHHHHHHH
Q 042117 81 GARQLYENYLSPFLL--RCQAKADKLKATTHAKFDQLTA 117 (122)
Q Consensus 81 GA~~iy~~~i~p~l~--~~e~~ID~~l~~~~~~~~~~~~ 117 (122)
.+..+|++++.|... ..++.+++..+.+++.++.+..
T Consensus 29 ~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~~~l~~le~ 67 (126)
T d1gnwa1 29 ASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEA 67 (126)
T ss_dssp HHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888753 4577788888877777766654
No 3
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=22.19 E-value=25 Score=18.41 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=17.2
Q ss_pred hHHHHHHHhhcCCHHHHhHHHHH
Q 042117 17 PVYSTFKAIERKDEDEQQKWLMY 39 (122)
Q Consensus 17 Pay~S~k~l~~~~~~~~~~wL~Y 39 (122)
|+|+|+-.++.-+++...+.|+=
T Consensus 1 pgyaslisirgidreraerllkk 23 (55)
T d2csba4 1 PGYASLISIRGIDRERAERLLKK 23 (55)
T ss_dssp TTHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCccceeeeecccHHHHHHHHHH
Confidence 78899888887777776666653
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.76 E-value=60 Score=19.31 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 042117 94 LLRCQAKADKLKATTHAKFDQLTAI 118 (122)
Q Consensus 94 l~~~e~~ID~~l~~~~~~~~~~~~~ 118 (122)
+...|+.+|+.+.....+++++++-
T Consensus 13 L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 13 LQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4577899999999999999988764
No 5
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.24 E-value=41 Score=19.27 Aligned_cols=14 Identities=14% Similarity=0.627 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHH
Q 042117 32 EQQKWLMYWAAYGT 45 (122)
Q Consensus 32 ~~~~wL~YWiv~~~ 45 (122)
+-..|+.+|.+|-.
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999998753
No 6
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=13.99 E-value=1.1e+02 Score=19.93 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=17.1
Q ss_pred hhHHHHHHHHH--HHHHHHHHHHHhhc
Q 042117 97 CQAKADKLKAT--THAKFDQLTAITQA 121 (122)
Q Consensus 97 ~e~~ID~~l~~--~~~~~~~~~~~~~~ 121 (122)
--+...+.|+. +.+++.++.+.|||
T Consensus 238 g~~~a~~~I~sG~A~~~l~~~i~~~~~ 264 (264)
T d2elca2 238 GVALAREVLASGEAYLLLERYVAFLRA 264 (264)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHcC
Confidence 33444445554 67789999999986
No 7
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Probab=12.20 E-value=62 Score=23.24 Aligned_cols=26 Identities=15% Similarity=-0.012 Sum_probs=21.2
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHH
Q 042117 90 LSPFLLRCQAKADKLKATTHAKFDQL 115 (122)
Q Consensus 90 i~p~l~~~e~~ID~~l~~~~~~~~~~ 115 (122)
+.|-+..-+++||+.++.+++.++++
T Consensus 398 ~~PpL~it~~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 398 ILVPLTIEDAQIRQGLEIISQCFDEA 423 (425)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45666678999999999998887775
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=12.11 E-value=78 Score=15.50 Aligned_cols=17 Identities=18% Similarity=-0.001 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHhHhhH
Q 042117 2 SVQDVYLNCSVGVALPV 18 (122)
Q Consensus 2 s~~~~~l~~~ig~~yPa 18 (122)
|++.-++..++|.+.|+
T Consensus 8 syLPwI~iPvv~wl~p~ 24 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMPT 24 (38)
T ss_dssp TTHHHHHHHHHHTHHHH
T ss_pred HhcchhHHHHHHHHHHH
Confidence 55666777777777777
No 9
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}
Probab=12.10 E-value=63 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.5
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHH
Q 042117 90 LSPFLLRCQAKADKLKATTHAKFDQL 115 (122)
Q Consensus 90 i~p~l~~~e~~ID~~l~~~~~~~~~~ 115 (122)
+.|-+.--+++||+.++.+++.++++
T Consensus 378 ~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 378 LTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 56666677999999999999988875
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.52 E-value=91 Score=14.77 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=11.9
Q ss_pred hHHHHHHHHhHhhHHHHH
Q 042117 5 DVYLNCSVGVALPVYSTF 22 (122)
Q Consensus 5 ~~~l~~~ig~~yPay~S~ 22 (122)
+..-....|.+||..+-+
T Consensus 14 gt~tg~alg~lypvvkyf 31 (34)
T d2e74d2 14 GTVTGVALGALYPLVKYF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhHHhhc
Confidence 344556678899986543
Done!