BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042118
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MYO|A Chain A, Crystal Structure Of Tagatose-1,6-Bisphosphate Aldolase
           From Streptococcus Pyogenes
 pdb|3MYO|B Chain B, Crystal Structure Of Tagatose-1,6-Bisphosphate Aldolase
           From Streptococcus Pyogenes
          Length = 333

 Score = 33.9 bits (76), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 79  IQGFSEFPRHYVNPKKISQFIPIPTGMAIPF------YSGAFFAVDIFVGAGSEEYAGAV 132
           ++GF+E   HY   + I  F        +P+       S   F   ++  A     AGA 
Sbjct: 214 VEGFTEGEVHYSQAEAIKAFQDQEAASHLPYIYLSAGVSAKLFQETLYFAAA----AGAQ 269

Query: 133 VSGLICGDGIWS 144
            SG++CG   W+
Sbjct: 270 FSGVLCGRATWA 281


>pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
 pdb|1JUH|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
 pdb|1JUH|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
 pdb|1JUH|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
 pdb|1GQG|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Diethyldithiocarbamate
 pdb|1GQG|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Diethyldithiocarbamate
 pdb|1GQG|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Diethyldithiocarbamate
 pdb|1GQG|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Diethyldithiocarbamate
 pdb|1GQH|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Kojic Acid
 pdb|1GQH|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Kojic Acid
 pdb|1GQH|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Kojic Acid
 pdb|1GQH|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
           Kojic Acid
 pdb|1H1I|A Chain A, Crystal Structure Of Quercetin 2,3-dioxygenase
           Anaerobically Complexed With The Substrate Quercetn
 pdb|1H1I|B Chain B, Crystal Structure Of Quercetin 2,3-dioxygenase
           Anaerobically Complexed With The Substrate Quercetn
 pdb|1H1I|C Chain C, Crystal Structure Of Quercetin 2,3-dioxygenase
           Anaerobically Complexed With The Substrate Quercetn
 pdb|1H1I|D Chain D, Crystal Structure Of Quercetin 2,3-dioxygenase
           Anaerobically Complexed With The Substrate Quercetn
 pdb|1H1M|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
           Anaerobically Complexed With The Substrate Kaempferol
 pdb|1H1M|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
           Anaerobically Complexed With The Substrate Kaempferol
 pdb|1H1M|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
           Anaerobically Complexed With The Substrate Kaempferol
 pdb|1H1M|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
           Anaerobically Complexed With The Substrate Kaempferol
          Length = 350

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 101 IPTGMAIPFYSGAFFAVDIFVGAGSEEYAGAVVSGLICGDGIWSIAS 147
           IP G+   +YS A+F+  +FV +GS+     +   L+ G   WS  S
Sbjct: 303 IPGGVEFKYYSEAYFSKVLFVSSGSD----GLDQNLVNGGEEWSSVS 345


>pdb|1A0I|A Chain A, Atp-Dependent Dna Ligase From Bacteriophage T7 Complex
           With Atp
          Length = 348

 Score = 26.6 bits (57), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 1   MMSIISIAADLMQDFKTDYLTRSSAKSVFVSEV-LGAAMGCVIGPLTLWLYSNAFDIRSP 59
           +++  +I+  LM +F       + ++  F S   +G    C I P   W    ++   +P
Sbjct: 276 LVNATNISRALMDEFTETVKEATLSQWGFFSPYGIGDNDACTINPYDGWACQISYMEETP 335

Query: 60  DGPCKAPYAVIYR 72
           DG  + P  V++R
Sbjct: 336 DGSLRHPSFVMFR 348


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,733,306
Number of Sequences: 62578
Number of extensions: 191727
Number of successful extensions: 423
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)