Query 042118
Match_columns 165
No_of_seqs 124 out of 895
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 8.1E-36 1.8E-40 264.9 3.7 156 3-158 530-732 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1.2E-34 2.5E-39 263.3 6.5 154 3-156 481-680 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.2E-32 2.5E-37 250.6 9.8 145 2-149 464-650 (654)
4 TIGR00733 putative oligopeptid 100.0 1.4E-30 3.1E-35 234.2 9.7 148 2-151 404-590 (591)
5 PF03169 OPT: OPT oligopeptide 100.0 1.2E-29 2.7E-34 229.6 11.5 149 2-150 444-623 (624)
6 COG1297 Predicted membrane pro 99.9 1.3E-23 2.8E-28 185.6 8.1 155 2-158 428-622 (624)
7 KOG0224 Aquaporin (major intri 50.0 37 0.00079 29.0 4.9 47 29-75 115-172 (316)
8 PHA02132 hypothetical protein 45.9 39 0.00085 22.6 3.6 28 21-48 41-68 (86)
9 PF06695 Sm_multidrug_ex: Puta 43.2 25 0.00055 25.5 2.7 25 17-41 96-120 (121)
10 PRK10697 DNA-binding transcrip 26.2 1.8E+02 0.0038 21.3 4.7 36 17-52 25-64 (118)
11 PF11166 DUF2951: Protein of u 23.3 1.5E+02 0.0033 20.9 3.7 24 26-49 72-95 (98)
12 TIGR00733 putative oligopeptid 22.6 4.9E+02 0.011 24.2 8.0 48 101-148 190-266 (591)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-36 Score=264.87 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=136.7
Q ss_pred hHHHHHHHHhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCCCC--CCCCCcccHHHHHHHhhcc-c
Q 042118 3 SIISIAADLMQDFKTDYLTRSSAKSVFVSEVLGAAMGCVIGPLT-LWLYSNAFDIRS--PDGPCKAPYAVIYREIAIP-G 78 (165)
Q Consensus 3 ~~~~qa~~~~qDlK~G~y~~~pPr~~f~~Q~iG~iig~~v~~~v-~~ll~~~~~i~~--~~~~~~~P~a~~~~~~a~~-~ 78 (165)
.++.||..++||+|+|||||+|||.||.+|++||+++++|+.+| .|++.+++++|| ++++||||..++++++|++ |
T Consensus 530 ism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWG 609 (761)
T KOG2262|consen 530 ISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWG 609 (761)
T ss_pred hhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCCCCCCccCCCCceEEeceeeee
Confidence 36799999999999999999999999999999999999999999 999999999998 5579999999999999999 9
Q ss_pred cccCccc----------ccccc---------------cccc-cccccccccccccccccch----hhHhHHHhhc-----
Q 042118 79 IQGFSEF----------PRHYV---------------NPKK-ISQFIPIPTGMAIPFYSGA----FFAVDIFVGA----- 123 (165)
Q Consensus 79 ~~G~~~l----------p~~~~---------------~p~~-~~~~v~~~v~~~~~~~lP~----~~~~~~~vG~----- 123 (165)
++||.++ -+.++ +|++ |.+++|.|+.++....+|| +|+.++.+|+
T Consensus 610 lIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~ 689 (761)
T KOG2262|consen 610 LIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYY 689 (761)
T ss_pred cccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHH
Confidence 9997654 11111 6764 5777999999999999998 4777777777
Q ss_pred -------cccchhhhhhhhHhhhHHHHHHHHH-HHHhCCCCCC
Q 042118 124 -------GSEEYAGAVVSGLICGDGIWSIASA-TLSVFRLNAP 158 (165)
Q Consensus 124 -------~~~~y~~~lasGL~aG~ai~giv~~-~l~~~~~~~p 158 (165)
||+||||++|+|||||.++++++++ +++..+.+.+
T Consensus 690 i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~ 732 (761)
T KOG2262|consen 690 IFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLN 732 (761)
T ss_pred HHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccc
Confidence 9999999999999999999999999 5787766543
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.2e-34 Score=263.27 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=131.7
Q ss_pred hHHHHHHHHhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCCCC--CCCCCcccHHHHHHHhhcc-c
Q 042118 3 SIISIAADLMQDFKTDYLTRSSAKSVFVSEVLGAAMGCVIGPLT-LWLYSNAFDIRS--PDGPCKAPYAVIYREIAIP-G 78 (165)
Q Consensus 3 ~~~~qa~~~~qDlK~G~y~~~pPr~~f~~Q~iG~iig~~v~~~v-~~ll~~~~~i~~--~~~~~~~P~a~~~~~~a~~-~ 78 (165)
++.+||.+++||+|+|||||+|||.||++|++|+++|+++|+++ .|++++++|+|| ++++|+||.++++++.+++ |
T Consensus 481 ~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg 560 (681)
T TIGR00727 481 ITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTADQNAKYTCPNAVVFFNASVIWG 560 (681)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCccCCCccceeehehhhh
Confidence 57899999999999999999999999999999999999999999 999999999998 4479999999999999999 9
Q ss_pred cccCccc----------ccccc---------------cccccccccccccccccccccchh----hHhHHHhhc------
Q 042118 79 IQGFSEF----------PRHYV---------------NPKKISQFIPIPTGMAIPFYSGAF----FAVDIFVGA------ 123 (165)
Q Consensus 79 ~~G~~~l----------p~~~~---------------~p~~~~~~v~~~v~~~~~~~lP~~----~~~~~~vG~------ 123 (165)
++|+.++ ++.++ +|+++.|++|.|++++....+|+. +.....+|.
T Consensus 561 ~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~i 640 (681)
T TIGR00727 561 VIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYM 640 (681)
T ss_pred hcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHH
Confidence 9996443 11111 677778899999999986666654 445556777
Q ss_pred ------cccchhhhhhhhHhhhHHHHHHHHH-HHHhCCCC
Q 042118 124 ------GSEEYAGAVVSGLICGDGIWSIASA-TLSVFRLN 156 (165)
Q Consensus 124 ------~~~~y~~~lasGL~aG~ai~giv~~-~l~~~~~~ 156 (165)
||+||||++|||||+|+++++++++ ++++.+.+
T Consensus 641 rr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 641 KKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDTA 680 (681)
T ss_pred HHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCCC
Confidence 9999999999999999999999998 57776653
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=99.98 E-value=1.2e-32 Score=250.57 Aligned_cols=145 Identities=23% Similarity=0.350 Sum_probs=123.5
Q ss_pred hhHHHHHHHHhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHhhcc-ccc
Q 042118 2 MSIISIAADLMQDFKTDYLTRSSAKSVFVSEVLGAAMGCVIGPLTLWLYSNAFDIRSPDGPCKAPYAVIYREIAIP-GIQ 80 (165)
Q Consensus 2 ~~~~~qa~~~~qDlK~G~y~~~pPr~~f~~Q~iG~iig~~v~~~v~~ll~~~~~i~~~~~~~~~P~a~~~~~~a~~-~~~ 80 (165)
.++++||.|++||||+|||+|+|||+||.+|++|+++|++++++++..+.+.++.. +++|+||++++|+++|++ +++
T Consensus 464 ~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~~--~~~~~~p~a~~~~~aa~~~g~~ 541 (654)
T TIGR00728 464 FITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGNQ--NNNFTCPNALVFYNASLIWGVI 541 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCccCCcccchhhheeeeccc
Confidence 46899999999999999999999999999999999999999999976666777664 578999999999999998 878
Q ss_pred c---Ccccccc--c----c--------------cccccccccccccccccccccchhhHhHHH----hhc----------
Q 042118 81 G---FSEFPRH--Y----V--------------NPKKISQFIPIPTGMAIPFYSGAFFAVDIF----VGA---------- 123 (165)
Q Consensus 81 G---~~~lp~~--~----~--------------~p~~~~~~v~~~v~~~~~~~lP~~~~~~~~----vG~---------- 123 (165)
| +++.+.| + + +|| +.+++|+|+++++++++|++++++++ +|+
T Consensus 542 Gp~~f~~~~~y~~~~~~~l~G~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~ 620 (654)
T TIGR00728 542 GPKIFSGKGLYCGLMWFFLVGVGAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNK 620 (654)
T ss_pred cchhcCCCCccHHHHHHHHHHHHHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence 8 3321111 1 0 233 56789999999999999999888887 887
Q ss_pred --cc--cchhhhhhhhHhhhHHHHHHHHHH
Q 042118 124 --GS--EEYAGAVVSGLICGDGIWSIASAT 149 (165)
Q Consensus 124 --~~--~~y~~~lasGL~aG~ai~giv~~~ 149 (165)
|| +||||++||||||||+|+++++++
T Consensus 621 ~~~~~~~~y~~~laagL~~G~al~gviiff 650 (654)
T TIGR00728 621 RADWKAEKYNYVLAAGLIAGEALAGVIIFF 650 (654)
T ss_pred hhhhhhhhhHHHHHHHHhhhHHHHHHHHHH
Confidence 44 899999999999999999999974
No 4
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=99.97 E-value=1.4e-30 Score=234.21 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=123.4
Q ss_pred hhHHHHHHHHhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----CCCCCcccHHHHHHHhhc
Q 042118 2 MSIISIAADLMQDFKTDYLTRSSAKSVFVSEVLGAAMGCVIGPLTLWLYSNAFDIRS-----PDGPCKAPYAVIYREIAI 76 (165)
Q Consensus 2 ~~~~~qa~~~~qDlK~G~y~~~pPr~~f~~Q~iG~iig~~v~~~v~~ll~~~~~i~~-----~~~~~~~P~a~~~~~~a~ 76 (165)
.++++||.|++||||+||++|++||+||++|++|+++|+++.+++++++.++|++++ |+++|++||+..|+++++
T Consensus 404 ~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~ 483 (591)
T TIGR00733 404 CTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTE 483 (591)
T ss_pred HHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHh
Confidence 568999999999999999999999999999999999999999999999999998753 446799999999999997
Q ss_pred cccccCcccccccc----------------cccccccccccccccccccccchhhHhHHHhhc----cc-----------
Q 042118 77 PGIQGFSEFPRHYV----------------NPKKISQFIPIPTGMAIPFYSGAFFAVDIFVGA----GS----------- 125 (165)
Q Consensus 77 ~~~~G~~~lp~~~~----------------~p~~~~~~v~~~v~~~~~~~lP~~~~~~~~vG~----~~----------- 125 (165)
....+ .+|+.+. .+++++++-.+++++++|+|+|+++++++++|+ .|
T Consensus 484 gi~~~--~l~~~~i~~ga~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~ 561 (591)
T TIGR00733 484 GVFTG--TLEWTMVFIGAGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESF 561 (591)
T ss_pred hhcCC--CccHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchh
Confidence 65443 4565432 233333433458999999999999999999999 11
Q ss_pred ---cchhhhhhhhHhhhHHHHHHHHHHHH
Q 042118 126 ---EEYAGAVVSGLICGDGIWSIASATLS 151 (165)
Q Consensus 126 ---~~y~~~lasGL~aG~ai~giv~~~l~ 151 (165)
+++.+++||||++||+++|++++++.
T Consensus 562 ~~~~~~g~~vASGLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 562 TDKKRLGVLGAAGLIVGESLTGVVFAAII 590 (591)
T ss_pred hhhhceeeEEecHhhcchHHHHHHHHHHh
Confidence 24578999999999999999998753
No 5
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=99.96 E-value=1.2e-29 Score=229.56 Aligned_cols=149 Identities=25% Similarity=0.386 Sum_probs=121.7
Q ss_pred hhHHHHHHHHhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCCCcccHHHHHHHhhccc
Q 042118 2 MSIISIAADLMQDFKTDYLTRSSAKSVFVSEVLGAAMGCVIGPLTLWLYSNAFDIRSP---DGPCKAPYAVIYREIAIPG 78 (165)
Q Consensus 2 ~~~~~qa~~~~qDlK~G~y~~~pPr~~f~~Q~iG~iig~~v~~~v~~ll~~~~~i~~~---~~~~~~P~a~~~~~~a~~~ 78 (165)
.++++||.|++||||+|||+|+|||+||.+|++|+++|+++++++++++++.|...++ +.++++|++..|++++...
T Consensus 444 ~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~ 523 (624)
T PF03169_consen 444 YAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGL 523 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999998888666665421 3456677788887777655
Q ss_pred cccCcccccccc-----------ccc-ccccccccccccc----cccccchhhHhHHHhhc------------cccchhh
Q 042118 79 IQGFSEFPRHYV-----------NPK-KISQFIPIPTGMA----IPFYSGAFFAVDIFVGA------------GSEEYAG 130 (165)
Q Consensus 79 ~~G~~~lp~~~~-----------~p~-~~~~~v~~~v~~~----~~~~lP~~~~~~~~vG~------------~~~~y~~ 130 (165)
..+..++|++.+ .+. -..|++|.+++++ +++++|++++.++++|+ ||+||||
T Consensus 524 ~~~~~~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~ 603 (624)
T PF03169_consen 524 IGPQRGLPYSALPWGFLIGAVLPILFWLLQRKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNY 603 (624)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHhhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhh
Confidence 443234454433 111 2367899889999 99999999999999999 7899999
Q ss_pred hhhhhHhhhHHHHHHHHHHH
Q 042118 131 AVVSGLICGDGIWSIASATL 150 (165)
Q Consensus 131 ~lasGL~aG~ai~giv~~~l 150 (165)
++|||||+||++++++++++
T Consensus 604 ~laagl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 604 VLAAGLIAGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.89 E-value=1.3e-23 Score=185.58 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=126.6
Q ss_pred hhHHHHHHHHhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCcccHHHHHHHhhcc
Q 042118 2 MSIISIAADLMQDFKTDYLTRSSAKSVFVSEVLGAAMGCVIGPLTLWLYSNAFDIRS----PDGPCKAPYAVIYREIAIP 77 (165)
Q Consensus 2 ~~~~~qa~~~~qDlK~G~y~~~pPr~~f~~Q~iG~iig~~v~~~v~~ll~~~~~i~~----~~~~~~~P~a~~~~~~a~~ 77 (165)
..++.++.|++|||||||++|++||+||.+|++|+++++++..+++.+++++|++.. ++.+.++||+..+.+++..
T Consensus 428 ~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia~G 507 (624)
T COG1297 428 AAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIAKG 507 (624)
T ss_pred HHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHhcc
Confidence 357889999999999999999999999999999999999999999999999999864 1124899999999998864
Q ss_pred ccccCcccccccc------------cc----cccccccccccccccccccchhhHhHHHhhc-----------c------
Q 042118 78 GIQGFSEFPRHYV------------NP----KKISQFIPIPTGMAIPFYSGAFFAVDIFVGA-----------G------ 124 (165)
Q Consensus 78 ~~~G~~~lp~~~~------------~p----~~~~~~v~~~v~~~~~~~lP~~~~~~~~vG~-----------~------ 124 (165)
... +.+.|.++ .+ +++.++.++++++++|.|+||+.+.++++|+ |
T Consensus 508 vf~--~~lew~mi~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~ 585 (624)
T COG1297 508 VFT--GNLEWSMILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYK 585 (624)
T ss_pred cCC--CCcchHHHHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhh
Confidence 332 34555443 11 2445566669999999999999999999999 1
Q ss_pred --ccchhhhhhhhHhhhHHHHHHHHHHHHhC-CCCCC
Q 042118 125 --SEEYAGAVVSGLICGDGIWSIASATLSVF-RLNAP 158 (165)
Q Consensus 125 --~~~y~~~lasGL~aG~ai~giv~~~l~~~-~~~~p 158 (165)
.+|..+++||||+.||++.|++.+.+... |.+.|
T Consensus 586 e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~~~p 622 (624)
T COG1297 586 ERAKRIGVLFAAGLIVGESLFGVITALIIVGSGKEAP 622 (624)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHheecCCCCC
Confidence 13478999999999999999999987654 44444
No 7
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=49.97 E-value=37 Score=28.98 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccCC----CCCCCC------CCcccHHHHHHHhh
Q 042118 29 FVSEVLGAAMGCVIGPLT-LWLYSNAFD----IRSPDG------PCKAPYAVIYREIA 75 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v-~~ll~~~~~----i~~~~~------~~~~P~a~~~~~~a 75 (165)
+.+|.+|.++|+...++. +-.+.+-++ +.+|++ .+|.|+-..|..--
T Consensus 115 ~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~ 172 (316)
T KOG0224|consen 115 VLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFF 172 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHH
Confidence 579999999999999999 556766553 322332 58888888776543
No 8
>PHA02132 hypothetical protein
Probab=45.86 E-value=39 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042118 21 TRSSAKSVFVSEVLGAAMGCVIGPLTLW 48 (165)
Q Consensus 21 ~~~pPr~~f~~Q~iG~iig~~v~~~v~~ 48 (165)
-|-|.|..-..|++|++.|+..-+.++.
T Consensus 41 sk~pa~sl~~vqiyg~ia~awlp~~~~l 68 (86)
T PHA02132 41 SKMPARSLCAVQVYGMIAGAWLPLAIYL 68 (86)
T ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999998776643
No 9
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=43.25 E-value=25 Score=25.52 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.8
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHHH
Q 042118 17 TDYLTRSSAKSVFVSEVLGAAMGCV 41 (165)
Q Consensus 17 ~G~y~~~pPr~~f~~Q~iG~iig~~ 41 (165)
.++.+|.++|+.+.+..+|++++++
T Consensus 96 ~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 96 IASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999998875
No 10
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=26.22 E-value=1.8e+02 Score=21.29 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=24.9
Q ss_pred hhhhcCCchHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Q 042118 17 TDYLTRSSAKSVFVSEVLGAAMG----CVIGPLTLWLYSN 52 (165)
Q Consensus 17 ~G~y~~~pPr~~f~~Q~iG~iig----~~v~~~v~~ll~~ 52 (165)
+++|.++++...-+.-++.+++| .++.+.+.|++..
T Consensus 25 iA~y~gi~~~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp 64 (118)
T PRK10697 25 IAHYFDVPVKLVRIIVVLSIFFGLFVFTLVAYIILSFALD 64 (118)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhcc
Confidence 57899999988888767766664 3455666555433
No 11
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=23.29 E-value=1.5e+02 Score=20.91 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042118 26 KSVFVSEVLGAAMGCVIGPLTLWL 49 (165)
Q Consensus 26 r~~f~~Q~iG~iig~~v~~~v~~l 49 (165)
-++++--++||++|+++-..+..+
T Consensus 72 ~KmwilGlvgTi~gsliia~lr~~ 95 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLIIALLRTI 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999996554433
No 12
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=22.64 E-value=4.9e+02 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=36.3
Q ss_pred cccccccccccchhhHhHHHhhc---------------cc-------cchhhh-------hhhhHhhhHHHHHHHHH
Q 042118 101 IPTGMAIPFYSGAFFAVDIFVGA---------------GS-------EEYAGA-------VVSGLICGDGIWSIASA 148 (165)
Q Consensus 101 ~~v~~~~~~~lP~~~~~~~~vG~---------------~~-------~~y~~~-------lasGL~aG~ai~giv~~ 148 (165)
+|..+|.|+..++..+..+++|+ |. ++...+ .+.|.+.++++..++..
T Consensus 190 SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 190 SLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred cHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 68999999999999999888888 11 111122 58899999999988754
Done!