Query 042118
Match_columns 165
No_of_seqs 124 out of 895
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mjh_B Early endosome antigen 21.1 19 0.00065 19.7 -0.1 9 156-164 7-15 (34)
2 3h3g_B Parathyroid hormone-rel 12.7 1.7E+02 0.0057 14.7 2.4 11 26-36 9-19 (24)
3 1ldf_A Glycerol uptake facilit 12.2 1.7E+02 0.0057 23.1 3.3 19 29-47 90-108 (281)
4 3llq_A Aquaporin Z 2; aquapori 11.7 1.7E+02 0.0057 22.9 3.1 18 29-46 113-130 (256)
5 2f2b_A Aquaporin AQPM; protein 11.2 1.8E+02 0.0061 22.4 3.1 18 29-46 104-121 (246)
6 2o9g_A Aquaporin Z; integral m 11.2 1.8E+02 0.0061 22.2 3.1 18 29-46 88-105 (234)
7 2j01_J 50S ribosomal protein L 11.0 2.5E+02 0.0084 20.3 3.7 29 16-44 121-149 (173)
8 3gd8_A Aquaporin-4; proton exc 10.8 3.1E+02 0.011 20.7 4.4 18 29-46 88-105 (223)
9 1zav_A 50S ribosomal protein L 10.4 2.6E+02 0.0088 20.3 3.7 28 17-44 129-156 (180)
10 3c02_A Aquaglyceroporin; membr 10.1 1.8E+02 0.0061 22.6 2.8 18 29-46 92-109 (258)
No 1
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.08 E-value=19 Score=19.71 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=6.5
Q ss_pred CCCccccCC
Q 042118 156 NAPICMSPF 164 (165)
Q Consensus 156 ~~p~~~~~~ 164 (165)
-=|+||+.+
T Consensus 7 iCP~C~~~l 15 (34)
T 3mjh_B 7 ICPQCMKSL 15 (34)
T ss_dssp ECTTTCCEE
T ss_pred CCcHHHHHc
Confidence 348999864
No 2
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=12.65 E-value=1.7e+02 Score=14.65 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 042118 26 KSVFVSEVLGA 36 (165)
Q Consensus 26 r~~f~~Q~iG~ 36 (165)
|.+|.-++++.
T Consensus 9 Rr~wL~~ll~~ 19 (24)
T 3h3g_B 9 RRFFLHHLIAE 19 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 3
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=12.19 E-value=1.7e+02 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLTL 47 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v~ 47 (165)
..+|++|.++|+.+...++
T Consensus 90 i~AQ~lGA~~ga~l~~~~~ 108 (281)
T 1ldf_A 90 IVSQVAGAFCAAALVYGLY 108 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5799999999999987774
No 4
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=11.71 E-value=1.7e+02 Score=22.95 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 113 iiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 113 VIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568999999988875443
No 5
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=11.21 E-value=1.8e+02 Score=22.37 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 104 i~AQ~lGa~~ga~l~~~~ 121 (246)
T 2f2b_A 104 IIAQLLGAAFGSFIFLQC 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999998886555
No 6
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=11.17 E-value=1.8e+02 Score=22.21 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 88 i~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 88 VIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999988888876544
No 7
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=10.97 E-value=2.5e+02 Score=20.28 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=22.5
Q ss_pred hhhhhcCCchHHHHHHHHHHHHHHHHHHH
Q 042118 16 KTDYLTRSSAKSVFVSEVLGAAMGCVIGP 44 (165)
Q Consensus 16 K~G~y~~~pPr~~f~~Q~iG~iig~~v~~ 44 (165)
.+-.+-+.|.|...++|++|++=+..-+.
T Consensus 121 ~v~~la~LPs~eel~a~l~g~l~ap~~~~ 149 (173)
T 2j01_J 121 DVEALAELPTMDELRAELVGVLQAPMAEL 149 (173)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999986655443
No 8
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=10.83 E-value=3.1e+02 Score=20.68 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 88 i~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 88 IAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 468999999988876554
No 9
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=10.40 E-value=2.6e+02 Score=20.34 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=22.1
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHH
Q 042118 17 TDYLTRSSAKSVFVSEVLGAAMGCVIGP 44 (165)
Q Consensus 17 ~G~y~~~pPr~~f~~Q~iG~iig~~v~~ 44 (165)
+-.+-+.|.|...++|++|++=+..-+.
T Consensus 129 v~~la~LPs~eel~a~l~g~l~ap~~~l 156 (180)
T 1zav_A 129 VENIAKLPSKEELYAMLVGRVKAPITGL 156 (180)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4457788999999999999986665443
No 10
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=10.06 E-value=1.8e+02 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 92 i~AQ~lGa~~ga~l~~~~ 109 (258)
T 3c02_A 92 FFAQLLGAFVGTSTVYGL 109 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999998776
Done!