Query 042118
Match_columns 165
No_of_seqs 124 out of 895
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 04:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042118.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042118hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 26.7 32 0.0023 17.1 2.8 17 134-150 2-18 (34)
2 d1ymga1 f.19.1.1 (A:6-239) Aqu 14.1 51 0.0037 23.3 2.7 17 29-45 85-101 (234)
3 d1zava1 d.58.62.1 (A:1-177) Ri 12.0 98 0.0072 20.7 3.7 29 17-45 128-156 (177)
4 d1fx8a_ f.19.1.1 (A:) Glycerol 9.2 1.2E+02 0.0084 21.5 3.3 18 29-46 85-102 (254)
5 d1rc2a_ f.19.1.1 (A:) Aquapori 9.2 96 0.007 21.4 2.8 19 28-46 84-102 (231)
6 d1j4na_ f.19.1.1 (A:) Aquapori 8.5 1.1E+02 0.008 21.5 2.9 18 29-46 100-117 (249)
7 d1zcea1 b.122.1.8 (A:2-147) Hy 8.0 47 0.0035 22.3 0.5 15 6-20 34-48 (146)
8 d1mtyg_ a.23.3.1 (G:) Methane 7.7 73 0.0053 21.6 1.4 18 3-20 20-37 (162)
9 d2evea1 b.122.1.8 (A:2-149) Hy 7.7 60 0.0044 21.8 0.9 15 6-20 31-45 (148)
10 d1mhyg_ a.23.3.1 (G:) Methane 7.2 80 0.0058 21.4 1.4 18 3-20 23-40 (167)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.71 E-value=32 Score=17.08 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=12.0
Q ss_pred hhHhhhHHHHHHHHHHH
Q 042118 134 SGLICGDGIWSIASATL 150 (165)
Q Consensus 134 sGL~aG~ai~giv~~~l 150 (165)
+++++|.++.-+-+-++
T Consensus 2 a~fiagta~tmig~tl~ 18 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTLV 18 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHHH
Confidence 67899998876655443
No 2
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.12 E-value=51 Score=23.30 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPL 45 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~ 45 (165)
..+|++|.++|+.+...
T Consensus 85 i~aQ~lGa~~ga~l~~~ 101 (234)
T d1ymga1 85 MVAQLLGAVAGAAVLYS 101 (234)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 46899999998877543
No 3
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=12.05 E-value=98 Score=20.70 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=22.9
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 042118 17 TDYLTRSSAKSVFVSEVLGAAMGCVIGPL 45 (165)
Q Consensus 17 ~G~y~~~pPr~~f~~Q~iG~iig~~v~~~ 45 (165)
+-.+-+.|.|...++|++|.+-+..-+..
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHHH
Confidence 33467889999999999999987665543
No 4
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=1.2e+02 Score=21.48 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 85 i~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 85 IVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999999998877
No 5
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=96 Score=21.43 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042118 28 VFVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 28 ~f~~Q~iG~iig~~v~~~v 46 (165)
-..+|++|.++|+.+...+
T Consensus 84 Yi~aQ~lGa~~g~~l~~~i 102 (231)
T d1rc2a_ 84 YVIAQVVGGIVAAALLYLI 102 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999998886544
No 6
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.52 E-value=1.1e+02 Score=21.52 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042118 29 FVSEVLGAAMGCVIGPLT 46 (165)
Q Consensus 29 f~~Q~iG~iig~~v~~~v 46 (165)
..+|++|.++|+.+...+
T Consensus 100 i~aQ~lGa~~g~~~~~~~ 117 (249)
T d1j4na_ 100 IIAQCVGAIVATAILSGI 117 (249)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHhhheee
Confidence 367888888887765443
No 7
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.96 E-value=47 Score=22.26 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhhhhh
Q 042118 6 SIAADLMQDFKTDYL 20 (165)
Q Consensus 6 ~qa~~~~qDlK~G~y 20 (165)
.||-+++.|+|.|.+
T Consensus 34 yqArn~lr~Mk~GD~ 48 (146)
T d1zcea1 34 YQARNNMRAMKIGDK 48 (146)
T ss_dssp HHHHHHHHTCCTTCE
T ss_pred HHHHHHHHhccCCCE
Confidence 489999999999975
No 8
>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=7.70 E-value=73 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=15.2
Q ss_pred hHHHHHHHHhhhhhhhhh
Q 042118 3 SIISIAADLMQDFKTDYL 20 (165)
Q Consensus 3 ~~~~qa~~~~qDlK~G~y 20 (165)
++..+|.+|+|||+.-|-
T Consensus 20 ~t~~~a~~flqdFR~~~t 37 (162)
T d1mtyg_ 20 NTLEKAAEMLKQFRMDHT 37 (162)
T ss_dssp CSHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 467899999999998774
No 9
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=7.66 E-value=60 Score=21.84 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=12.1
Q ss_pred HHHHHHhhhhhhhhh
Q 042118 6 SIAADLMQDFKTDYL 20 (165)
Q Consensus 6 ~qa~~~~qDlK~G~y 20 (165)
.||-+++.|+|.|-.
T Consensus 31 yqArn~lr~M~~GD~ 45 (148)
T d2evea1 31 YQARNFLRTMAEGDE 45 (148)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHhcccCCE
Confidence 488888888888864
No 10
>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=7.21 E-value=80 Score=21.44 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhhhhhhhh
Q 042118 3 SIISIAADLMQDFKTDYL 20 (165)
Q Consensus 3 ~~~~qa~~~~qDlK~G~y 20 (165)
++..+|.+|+|||+.-|-
T Consensus 23 ~t~~~a~~flqdFR~~~t 40 (167)
T d1mhyg_ 23 TSVDQATKFIQDFRLAYT 40 (167)
T ss_dssp CSHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 467899999999998774
Done!