BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042119
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 85 LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPL 144
LE+E A + + P L F +Y Y++L K E + + ++ F+G GP+PL
Sbjct: 80 LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204
T I+++ H+ + +I+ +++R ++ +G + +T D V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG-VDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS 264
+ +AAL E K + +I +Y+ ++ R+ G RA LY V + D+ F
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 AVHPNDDVINSVVLV 279
V P+ V N+ VLV
Sbjct: 247 VVLPSGKVNNTSVLV 261
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 85 LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPL 144
L++E A + + P L F +Y Y++L K E + + ++ F+G GP+PL
Sbjct: 79 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 135
Query: 145 TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204
T I+++ H+ + +I+ +++R ++ +G + +T D V + L E+D
Sbjct: 136 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG-VDG-VNVITGD-ETVIDGL-EFD 189
Query: 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS 264
+ +AAL E K + +I +Y+ ++ R+ G RA LY V + D+ F
Sbjct: 190 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 245
Query: 265 AVHPNDDVINSVVLV 279
V P+ V N+ VLV
Sbjct: 246 VVLPSGKVNNTSVLV 260
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 85 LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPL 144
L++E A + + P L F +Y Y++L K E + + ++ F+G GP+PL
Sbjct: 80 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204
T I+++ H+ + +I+ +++R ++ +G + +T D V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG-VDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS 264
+ +AAL E K + +I +Y+ ++ R+ G RA LY V + D+ F
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 AVHPNDDVINSVVLV 279
V P+ V N+ VLV
Sbjct: 247 VVLPSGKVNNTSVLV 261
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 113 VKLSKLEYTILSENGV-VQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAAND 170
V+LS+ ++SE GV + + V + G + ++ +H LT +D +AA
Sbjct: 161 VRLSQPXVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAAR- 219
Query: 171 VARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFLA-ALVGMSKEEKLTILGHIRK 228
++I A D GR++F +++++ + + G D + L L E ++GH
Sbjct: 220 --KTIHAHD--LGGRVEFFEKNLLDARNFEGGAADVVXLNDCLHYFDAREAREVIGHAAG 275
Query: 229 YMKDGGILLV 238
+K GG LL+
Sbjct: 276 LVKPGGALLI 285
>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp
Length = 498
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 25 IHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCG 79
I A+I +++ +Q + +++ LCT P+ +D + P++ +K ++ CG
Sbjct: 66 IRANIGDAQAM--GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACG 118
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF 188
V+P V +G+G + +A + + +ID+ + DAEF GR+
Sbjct: 166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDK--------LRQLDAEFCGRIHT 217
Query: 189 LTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL------VRSAK 242
E++ + D + A LV +K KL + + +MK G +L+ +
Sbjct: 218 RYSSAYELEGAVKRADLVIGAVLVPGAKAPKL-VSNSLVAHMKPGAVLVDIAINQGGCFE 276
Query: 243 GARAFLY--PVVVEHDLLDFEV 262
G+R Y P HD L + V
Sbjct: 277 GSRPTTYDHPTFAVHDTLFYCV 298
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF 188
V+P V +G+G + +A + + +ID+ + DAEF GR+
Sbjct: 166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDK--------LRQLDAEFCGRIHT 217
Query: 189 LTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL------VRSAK 242
E++ + D + A LV +K KL + + +MK G +L+ +
Sbjct: 218 RYSSAYELEGAVKRADLVIGAVLVPGAKAPKL-VSNSLVAHMKPGAVLVDIAIDQGGCFE 276
Query: 243 GARAFLY--PVVVEHDLLDFEV 262
G+R Y P HD L + V
Sbjct: 277 GSRPTTYDHPTFAVHDTLFYCV 298
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF 188
V+P V +G+G + +A + + +ID+ + DAEF GR+
Sbjct: 166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDK--------LRQLDAEFCGRIHT 217
Query: 189 LTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL------VRSAK 242
E++ + D + A LV +K KL + + +MK G +L+ +
Sbjct: 218 RYSSAYELEGAVKRADLVIGAVLVPGAKAPKL-VSNSLVAHMKPGAVLVDIAIDQGGCFE 276
Query: 243 GARAFLY--PVVVEHDLLDFEV 262
G+R Y P HD L + V
Sbjct: 277 GSRPTTYDHPTFAVHDTLFYCV 298
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 154 LTSTHFDNFDIDEAANDVARSIVASDAEFEGRM--KFLTRDIMEVKEQLGEYD 204
LT HF+N D + ND + +V + A F G+ KF + E +L + D
Sbjct: 144 LTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKECPFRLNKTD 196
>pdb|1VSY|4 Chain 4, Proteasome Activator Complex
pdb|1VSY|7 Chain 7, Proteasome Activator Complex
pdb|3L5Q|5 Chain 5, Proteasome Activator Complex
pdb|3L5Q|7 Chain 7, Proteasome Activator Complex
Length = 799
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 187 KFLTRDIMEVKEQLGEYDCIFLAALV----GMSKEEKLTILGHIRKYMKDGG 234
F + D + K+ E I LAALV G+SKE T+L HI++ +K G
Sbjct: 566 NFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGA 617
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 154 LTSTHFDNFDIDEAANDVARSIVASDAEFEGRM--KFLTRDIMEVKEQLGEYDC 205
LT HF+N D + ND + +V + A F G+ KF + E +L + D
Sbjct: 139 LTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKEXPFRLNKTDT 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,507,963
Number of Sequences: 62578
Number of extensions: 282294
Number of successful extensions: 802
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 13
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)