Query 042119
Match_columns 286
No_of_seqs 248 out of 1089
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03059 NAS: Nicotianamine sy 100.0 4.9E-77 1.1E-81 545.0 17.7 271 12-283 2-273 (276)
2 PLN03075 nicotianamine synthas 100.0 9.4E-75 2E-79 534.6 27.0 274 8-282 1-275 (296)
3 PF12847 Methyltransf_18: Meth 99.8 7.9E-18 1.7E-22 132.8 10.7 107 130-240 1-111 (112)
4 PLN02244 tocopherol O-methyltr 99.7 1E-15 2.2E-20 145.1 16.4 159 66-240 53-223 (340)
5 COG2226 UbiE Methylase involve 99.7 6E-16 1.3E-20 139.7 12.0 109 127-240 48-156 (238)
6 PF01209 Ubie_methyltran: ubiE 99.6 7.8E-16 1.7E-20 138.8 10.3 110 127-240 44-153 (233)
7 PF01596 Methyltransf_3: O-met 99.6 7.8E-16 1.7E-20 136.3 9.7 107 129-241 44-156 (205)
8 PF13847 Methyltransf_31: Meth 99.6 2.9E-15 6.4E-20 125.4 11.7 110 129-242 2-112 (152)
9 COG4122 Predicted O-methyltran 99.6 2.4E-15 5.2E-20 134.1 11.4 106 129-241 58-167 (219)
10 PLN02781 Probable caffeoyl-CoA 99.6 3.7E-15 7.9E-20 134.4 11.9 107 129-241 67-179 (234)
11 PRK00107 gidB 16S rRNA methylt 99.6 1.1E-14 2.4E-19 127.3 13.7 103 129-241 44-146 (187)
12 PRK11207 tellurite resistance 99.6 1.2E-14 2.7E-19 127.4 14.2 106 127-239 27-133 (197)
13 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.3E-14 2.9E-19 131.4 14.6 127 106-240 36-164 (247)
14 PLN02476 O-methyltransferase 99.6 1.3E-14 2.7E-19 133.9 12.2 107 129-241 117-229 (278)
15 PLN02589 caffeoyl-CoA O-methyl 99.6 1.2E-14 2.5E-19 132.2 11.5 107 129-241 78-191 (247)
16 TIGR00138 gidB 16S rRNA methyl 99.6 3.6E-14 7.7E-19 123.3 12.4 102 130-241 42-143 (181)
17 PF08241 Methyltransf_11: Meth 99.6 1.6E-14 3.4E-19 109.4 8.7 95 135-238 1-95 (95)
18 PRK11036 putative S-adenosyl-L 99.6 5.9E-14 1.3E-18 127.5 13.4 105 129-239 43-148 (255)
19 TIGR00740 methyltransferase, p 99.6 8.3E-14 1.8E-18 125.2 14.1 126 107-240 34-161 (239)
20 PLN02233 ubiquinone biosynthes 99.5 6.6E-14 1.4E-18 128.1 13.3 111 127-240 70-182 (261)
21 PTZ00098 phosphoethanolamine N 99.5 6.3E-14 1.4E-18 128.3 12.9 112 122-240 44-156 (263)
22 TIGR02752 MenG_heptapren 2-hep 99.5 1.3E-13 2.8E-18 122.7 14.4 112 125-240 40-151 (231)
23 TIGR02469 CbiT precorrin-6Y C5 99.5 1.4E-13 2.9E-18 109.8 13.1 107 126-240 15-122 (124)
24 PRK12335 tellurite resistance 99.5 1.3E-13 2.8E-18 127.6 14.6 103 129-239 119-222 (287)
25 PRK11873 arsM arsenite S-adeno 99.5 1.2E-13 2.6E-18 126.2 12.8 110 127-240 74-183 (272)
26 PF02353 CMAS: Mycolic acid cy 99.5 1.1E-13 2.3E-18 127.7 12.3 112 122-240 54-166 (273)
27 TIGR00477 tehB tellurite resis 99.5 1.2E-13 2.7E-18 120.9 12.0 105 127-239 27-132 (195)
28 PLN02396 hexaprenyldihydroxybe 99.5 1.1E-13 2.3E-18 130.5 12.3 107 129-241 130-236 (322)
29 TIGR03840 TMPT_Se_Te thiopurin 99.5 2.5E-13 5.5E-18 121.0 13.7 132 91-239 5-151 (213)
30 PRK13944 protein-L-isoaspartat 99.5 4.8E-13 1E-17 118.0 14.9 112 126-246 68-179 (205)
31 COG2227 UbiG 2-polyprenyl-3-me 99.5 7.3E-14 1.6E-18 125.3 9.2 105 129-241 58-162 (243)
32 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.7E-18 107.8 9.0 97 134-234 1-101 (101)
33 PRK00377 cbiT cobalt-precorrin 99.5 5.5E-13 1.2E-17 116.8 13.3 120 115-240 23-145 (198)
34 PRK00216 ubiE ubiquinone/menaq 99.5 9E-13 2E-17 116.7 14.4 110 127-240 48-158 (239)
35 PRK13255 thiopurine S-methyltr 99.5 8.7E-13 1.9E-17 117.9 13.6 127 95-238 12-153 (218)
36 TIGR00080 pimt protein-L-isoas 99.5 8.6E-13 1.9E-17 117.0 12.6 107 125-241 72-178 (215)
37 PRK13942 protein-L-isoaspartat 99.5 1.2E-12 2.6E-17 116.2 13.3 106 125-240 71-176 (212)
38 TIGR02716 C20_methyl_CrtF C-20 99.4 1.1E-12 2.5E-17 122.1 13.7 109 126-240 145-254 (306)
39 COG2242 CobL Precorrin-6B meth 99.4 2.1E-12 4.5E-17 112.1 13.9 119 113-240 15-135 (187)
40 PRK14103 trans-aconitate 2-met 99.4 8.9E-13 1.9E-17 119.7 12.2 105 122-239 21-125 (255)
41 smart00828 PKS_MT Methyltransf 99.4 1.3E-12 2.7E-17 115.8 12.3 104 132-240 1-104 (224)
42 PRK00121 trmB tRNA (guanine-N( 99.4 7E-13 1.5E-17 116.8 10.4 108 129-240 39-156 (202)
43 PF03848 TehB: Tellurite resis 99.4 2.7E-12 5.8E-17 112.6 13.2 106 127-240 27-133 (192)
44 PRK04457 spermidine synthase; 99.4 8.3E-13 1.8E-17 121.1 10.3 147 129-281 65-216 (262)
45 PRK08287 cobalt-precorrin-6Y C 99.4 2.7E-12 5.9E-17 111.2 12.8 106 125-240 26-131 (187)
46 COG2230 Cfa Cyclopropane fatty 99.4 2.1E-12 4.6E-17 119.0 12.7 112 122-240 64-176 (283)
47 COG2519 GCD14 tRNA(1-methylade 99.4 2.1E-12 4.6E-17 116.7 12.0 152 124-284 88-254 (256)
48 PLN02336 phosphoethanolamine N 99.4 1.8E-12 3.8E-17 127.6 12.5 111 123-240 259-369 (475)
49 PRK07402 precorrin-6B methylas 99.4 6.4E-12 1.4E-16 109.7 13.7 117 115-240 23-142 (196)
50 KOG1270 Methyltransferases [Co 99.4 5.3E-13 1.1E-17 120.9 6.8 102 131-240 90-195 (282)
51 PF13659 Methyltransf_26: Meth 99.4 1.8E-12 3.9E-17 103.0 9.1 106 131-240 1-115 (117)
52 KOG1540 Ubiquinone biosynthesi 99.4 3.7E-12 8.1E-17 115.0 11.9 111 125-240 95-214 (296)
53 PRK06922 hypothetical protein; 99.4 7.1E-12 1.5E-16 126.6 14.6 107 129-240 417-537 (677)
54 PRK13256 thiopurine S-methyltr 99.4 7.6E-12 1.6E-16 112.4 13.2 137 89-240 12-163 (226)
55 COG4106 Tam Trans-aconitate me 99.4 1.8E-12 3.8E-17 114.6 8.8 112 117-239 17-128 (257)
56 PRK01683 trans-aconitate 2-met 99.4 5.3E-12 1.1E-16 114.4 12.2 107 123-240 24-130 (258)
57 PRK10258 biotin biosynthesis p 99.4 5.3E-12 1.1E-16 114.0 11.6 100 129-240 41-140 (251)
58 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.1E-11 2.4E-16 108.6 13.0 106 128-240 37-143 (223)
59 TIGR00091 tRNA (guanine-N(7)-) 99.3 6.5E-12 1.4E-16 109.8 10.9 108 129-240 15-132 (194)
60 TIGR02021 BchM-ChlM magnesium 99.3 2.6E-11 5.5E-16 107.5 14.5 104 128-239 53-157 (219)
61 PRK08317 hypothetical protein; 99.3 1.5E-11 3.2E-16 108.4 12.7 111 125-240 14-124 (241)
62 PF08242 Methyltransf_12: Meth 99.3 4.6E-13 1E-17 103.9 2.6 97 135-236 1-99 (99)
63 PRK04266 fibrillarin; Provisio 99.3 3.3E-11 7.2E-16 108.3 14.9 148 125-282 67-226 (226)
64 TIGR02072 BioC biotin biosynth 99.3 1.8E-11 3.8E-16 108.2 12.7 103 129-240 33-135 (240)
65 PF05175 MTS: Methyltransferas 99.3 1.2E-11 2.7E-16 105.9 11.0 105 130-239 31-139 (170)
66 TIGR03438 probable methyltrans 99.3 4.3E-11 9.4E-16 111.7 15.4 121 116-239 43-176 (301)
67 PRK00517 prmA ribosomal protei 99.3 2.9E-11 6.3E-16 109.8 13.2 111 113-240 103-213 (250)
68 TIGR00406 prmA ribosomal prote 99.3 4.4E-11 9.5E-16 111.0 14.1 103 128-240 157-259 (288)
69 PRK11088 rrmA 23S rRNA methylt 99.3 2.3E-11 5E-16 111.6 11.9 109 125-250 80-196 (272)
70 TIGR03533 L3_gln_methyl protei 99.3 7.1E-11 1.5E-15 109.5 14.5 109 129-241 120-252 (284)
71 PRK00312 pcm protein-L-isoaspa 99.3 3.8E-11 8.2E-16 106.0 12.0 103 126-241 74-176 (212)
72 PRK07580 Mg-protoporphyrin IX 99.3 9.4E-11 2E-15 103.9 14.5 105 127-239 60-165 (230)
73 smart00138 MeTrc Methyltransfe 99.3 2.5E-11 5.4E-16 111.4 10.7 115 129-244 98-246 (264)
74 PRK13943 protein-L-isoaspartat 99.3 7.1E-11 1.5E-15 111.4 13.9 106 125-240 75-180 (322)
75 KOG1663 O-methyltransferase [S 99.3 2.8E-11 6.1E-16 107.9 10.4 107 129-241 72-184 (237)
76 PRK11705 cyclopropane fatty ac 99.3 6.1E-11 1.3E-15 114.3 13.6 106 124-240 161-267 (383)
77 PRK15068 tRNA mo(5)U34 methylt 99.3 5.3E-11 1.2E-15 112.2 12.9 107 128-240 120-226 (322)
78 PF01135 PCMT: Protein-L-isoas 99.3 2.9E-11 6.3E-16 107.5 10.4 112 120-241 62-173 (209)
79 PF05401 NodS: Nodulation prot 99.3 5.8E-11 1.3E-15 104.0 11.7 104 129-241 42-147 (201)
80 PLN02490 MPBQ/MSBQ methyltrans 99.3 3.2E-11 7E-16 114.4 10.7 104 129-240 112-215 (340)
81 TIGR00446 nop2p NOL1/NOP2/sun 99.2 8.6E-11 1.9E-15 107.7 12.6 111 127-240 68-199 (264)
82 PF05724 TPMT: Thiopurine S-me 99.2 5E-11 1.1E-15 106.6 10.7 132 94-239 11-154 (218)
83 TIGR00452 methyltransferase, p 99.2 8.7E-11 1.9E-15 110.4 12.5 108 126-240 117-225 (314)
84 PRK00811 spermidine synthase; 99.2 1.1E-10 2.5E-15 108.0 12.7 111 129-241 75-192 (283)
85 TIGR03587 Pse_Me-ase pseudamin 99.2 1.1E-10 2.3E-15 103.3 11.7 99 129-239 42-141 (204)
86 PRK11805 N5-glutamine S-adenos 99.2 1.3E-10 2.9E-15 108.8 12.6 108 131-242 134-265 (307)
87 COG2518 Pcm Protein-L-isoaspar 99.2 1.5E-10 3.2E-15 102.4 12.1 126 110-248 52-177 (209)
88 PLN02366 spermidine synthase 99.2 1.4E-10 3.1E-15 108.7 12.5 110 129-240 90-206 (308)
89 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.6E-10 3.4E-15 111.2 12.9 109 128-240 120-235 (390)
90 PF13489 Methyltransf_23: Meth 99.2 1.4E-10 3E-15 96.2 10.9 98 128-242 20-117 (161)
91 TIGR00537 hemK_rel_arch HemK-r 99.2 1.9E-10 4.2E-15 98.9 12.0 103 129-240 18-140 (179)
92 PRK15001 SAM-dependent 23S rib 99.2 2E-10 4.4E-15 110.4 13.3 108 129-240 227-340 (378)
93 COG2264 PrmA Ribosomal protein 99.2 2E-10 4.3E-15 106.8 12.2 139 117-269 150-290 (300)
94 cd02440 AdoMet_MTases S-adenos 99.2 2.4E-10 5.2E-15 85.6 10.6 102 133-239 1-103 (107)
95 PRK14903 16S rRNA methyltransf 99.2 2E-10 4.3E-15 112.4 12.8 111 127-240 234-366 (431)
96 PRK14967 putative methyltransf 99.2 2.9E-10 6.3E-15 101.4 12.6 110 123-239 29-158 (223)
97 PRK14901 16S rRNA methyltransf 99.2 2.3E-10 5E-15 111.9 12.9 111 127-240 249-384 (434)
98 PRK14902 16S rRNA methyltransf 99.2 2.5E-10 5.4E-15 111.9 13.1 111 127-240 247-379 (444)
99 TIGR00563 rsmB ribosomal RNA s 99.2 2.7E-10 5.8E-15 111.2 13.2 111 127-240 235-368 (426)
100 PRK05134 bifunctional 3-demeth 99.2 4.1E-10 8.9E-15 100.4 13.4 105 128-240 46-151 (233)
101 TIGR00536 hemK_fam HemK family 99.2 3.5E-10 7.5E-15 104.7 13.1 106 132-241 116-245 (284)
102 PF06325 PrmA: Ribosomal prote 99.2 1.6E-10 3.5E-15 107.7 10.8 113 114-240 146-259 (295)
103 PRK14904 16S rRNA methyltransf 99.2 4.6E-10 1E-14 110.1 14.1 110 127-240 247-377 (445)
104 TIGR03534 RF_mod_PrmC protein- 99.2 4.9E-10 1.1E-14 100.4 13.1 108 129-241 86-218 (251)
105 TIGR01177 conserved hypothetic 99.2 4.8E-10 1E-14 105.8 13.6 110 127-242 179-296 (329)
106 PRK14968 putative methyltransf 99.2 5.3E-10 1.1E-14 95.7 12.6 106 129-240 22-148 (188)
107 PRK10901 16S rRNA methyltransf 99.2 5.7E-10 1.2E-14 108.9 14.3 109 127-240 241-372 (427)
108 PRK01581 speE spermidine synth 99.1 3.2E-10 6.9E-15 108.1 11.9 111 129-241 149-269 (374)
109 PF08704 GCD14: tRNA methyltra 99.1 2.1E-10 4.5E-15 104.4 10.0 110 123-240 33-146 (247)
110 PLN02336 phosphoethanolamine N 99.1 4.4E-10 9.6E-15 110.7 13.1 104 129-240 36-142 (475)
111 TIGR01983 UbiG ubiquinone bios 99.1 7E-10 1.5E-14 98.0 11.9 104 130-240 45-149 (224)
112 PRK05785 hypothetical protein; 99.1 2.7E-10 5.8E-15 102.2 9.3 91 130-234 51-141 (226)
113 PRK01544 bifunctional N5-gluta 99.1 6.1E-10 1.3E-14 111.0 12.3 107 130-240 138-269 (506)
114 PLN02585 magnesium protoporphy 99.1 1.6E-09 3.5E-14 101.9 14.1 120 111-238 125-248 (315)
115 PTZ00146 fibrillarin; Provisio 99.1 1.5E-09 3.3E-14 100.8 13.5 189 86-282 86-287 (293)
116 COG4123 Predicted O-methyltran 99.1 8.5E-10 1.8E-14 100.2 11.3 110 128-240 42-170 (248)
117 PRK09489 rsmC 16S ribosomal RN 99.1 1.4E-09 3E-14 103.5 13.2 105 129-240 195-303 (342)
118 KOG4300 Predicted methyltransf 99.1 3.5E-10 7.5E-15 99.6 8.3 106 129-240 75-182 (252)
119 PRK06202 hypothetical protein; 99.1 7.5E-10 1.6E-14 99.1 10.2 104 129-240 59-166 (232)
120 TIGR03704 PrmC_rel_meth putati 99.1 1.2E-09 2.5E-14 99.7 11.4 135 130-277 86-248 (251)
121 KOG1271 Methyltransferases [Ge 99.1 1.2E-09 2.7E-14 94.5 10.6 108 130-240 67-181 (227)
122 PRK15128 23S rRNA m(5)C1962 me 99.1 1.5E-09 3.3E-14 105.0 12.4 108 129-240 219-339 (396)
123 PRK09328 N5-glutamine S-adenos 99.1 1.8E-09 3.8E-14 98.4 12.1 108 128-240 106-238 (275)
124 TIGR00417 speE spermidine synt 99.0 2E-09 4.3E-14 99.0 12.0 111 129-241 71-187 (270)
125 COG2890 HemK Methylase of poly 99.0 1.9E-08 4E-13 93.3 17.9 104 133-242 113-240 (280)
126 TIGR00438 rrmJ cell division p 99.0 1.5E-09 3.2E-14 94.2 9.4 99 128-240 30-146 (188)
127 PRK14966 unknown domain/N5-glu 99.0 3.7E-09 8E-14 102.6 13.0 107 129-240 250-381 (423)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2E-09 4.3E-14 111.2 11.7 107 129-240 537-656 (702)
129 PRK11188 rrmJ 23S rRNA methylt 99.0 3.5E-09 7.7E-14 93.9 11.6 134 128-281 49-206 (209)
130 PLN02823 spermine synthase 99.0 2.9E-09 6.2E-14 101.1 11.0 110 129-240 102-220 (336)
131 PF01564 Spermine_synth: Sperm 99.0 2.1E-09 4.6E-14 97.8 9.5 110 129-240 75-191 (246)
132 smart00650 rADc Ribosomal RNA 99.0 1.3E-08 2.9E-13 86.8 13.0 146 125-282 8-168 (169)
133 PRK03612 spermidine synthase; 99.0 3.7E-09 8.1E-14 105.7 10.9 109 129-240 296-415 (521)
134 PRK10909 rsmD 16S rRNA m(2)G96 98.9 9.9E-09 2.1E-13 90.6 11.9 106 129-241 52-160 (199)
135 COG0421 SpeE Spermidine syntha 98.9 7.7E-09 1.7E-13 95.9 10.4 108 129-240 75-190 (282)
136 PF00891 Methyltransf_2: O-met 98.9 1.1E-08 2.4E-13 91.9 11.1 100 127-240 97-199 (241)
137 PRK03522 rumB 23S rRNA methylu 98.9 2.7E-08 5.8E-13 93.5 13.5 100 129-239 172-273 (315)
138 COG2813 RsmC 16S RNA G1207 met 98.9 2.4E-08 5.1E-13 92.8 12.1 107 128-240 156-266 (300)
139 PF08003 Methyltransf_9: Prote 98.9 1.7E-08 3.7E-13 93.8 11.1 106 128-240 113-219 (315)
140 PRK13168 rumA 23S rRNA m(5)U19 98.9 2.2E-08 4.7E-13 98.3 12.5 102 127-239 294-399 (443)
141 PLN02232 ubiquinone biosynthes 98.8 6.9E-09 1.5E-13 88.2 7.2 79 160-240 1-81 (160)
142 TIGR00479 rumA 23S rRNA (uraci 98.8 3.3E-08 7.3E-13 96.5 12.5 102 127-239 289-395 (431)
143 TIGR02085 meth_trns_rumB 23S r 98.8 8.2E-08 1.8E-12 92.4 13.3 100 129-239 232-333 (374)
144 PLN02672 methionine S-methyltr 98.8 4.1E-08 8.9E-13 104.8 11.8 109 131-241 119-279 (1082)
145 COG2263 Predicted RNA methylas 98.8 9.4E-08 2E-12 83.3 11.7 76 125-209 40-115 (198)
146 PF13578 Methyltransf_24: Meth 98.7 7.6E-09 1.6E-13 81.3 3.2 101 135-240 1-105 (106)
147 KOG2361 Predicted methyltransf 98.7 3.8E-08 8.1E-13 88.6 7.9 118 116-240 57-183 (264)
148 PRK11933 yebU rRNA (cytosine-C 98.7 1.6E-07 3.5E-12 92.8 13.2 111 127-240 110-242 (470)
149 PF02390 Methyltransf_4: Putat 98.7 6.1E-08 1.3E-12 85.3 9.1 104 133-240 20-133 (195)
150 TIGR00095 RNA methyltransferas 98.7 1.6E-07 3.6E-12 82.1 11.8 107 129-242 48-161 (189)
151 PF02527 GidB: rRNA small subu 98.7 8.8E-08 1.9E-12 83.7 9.9 100 132-241 50-149 (184)
152 PF09445 Methyltransf_15: RNA 98.7 4.1E-08 8.9E-13 84.1 7.4 74 132-210 1-77 (163)
153 TIGR02081 metW methionine bios 98.7 1.2E-07 2.5E-12 82.7 9.6 91 129-232 12-104 (194)
154 PRK00536 speE spermidine synth 98.7 1.8E-07 4E-12 85.9 11.3 99 129-241 71-172 (262)
155 PRK11727 23S rRNA mA1618 methy 98.6 1.3E-07 2.7E-12 89.3 9.2 122 83-209 66-196 (321)
156 PF06080 DUF938: Protein of un 98.6 4E-07 8.6E-12 80.6 11.5 120 118-240 13-141 (204)
157 PF02475 Met_10: Met-10+ like- 98.6 3.1E-07 6.6E-12 81.3 10.2 111 117-237 89-199 (200)
158 COG1092 Predicted SAM-dependen 98.6 3.7E-07 8E-12 88.2 11.1 109 130-242 217-338 (393)
159 COG0220 Predicted S-adenosylme 98.6 4.2E-07 9.2E-12 81.9 10.2 106 132-241 50-165 (227)
160 PTZ00338 dimethyladenosine tra 98.6 4.7E-07 1E-11 84.5 10.8 78 125-209 31-108 (294)
161 KOG1269 SAM-dependent methyltr 98.6 1.4E-07 3.1E-12 90.3 7.2 162 67-240 54-215 (364)
162 PF05185 PRMT5: PRMT5 arginine 98.5 5.8E-07 1.2E-11 88.5 11.1 127 107-238 161-295 (448)
163 PRK04148 hypothetical protein; 98.5 1.5E-06 3.4E-11 72.1 11.7 93 129-240 15-109 (134)
164 PF03291 Pox_MCEL: mRNA cappin 98.5 5.3E-07 1.2E-11 85.5 10.0 110 130-242 62-188 (331)
165 PF07021 MetW: Methionine bios 98.5 9.5E-07 2.1E-11 77.4 10.4 96 128-239 11-108 (193)
166 PRK05031 tRNA (uracil-5-)-meth 98.5 5.1E-07 1.1E-11 86.6 9.5 96 131-239 207-319 (362)
167 PHA03411 putative methyltransf 98.5 6.6E-07 1.4E-11 82.6 9.7 101 129-239 63-182 (279)
168 COG0357 GidB Predicted S-adeno 98.5 7.1E-07 1.5E-11 79.7 8.6 99 131-238 68-166 (215)
169 PRK04338 N(2),N(2)-dimethylgua 98.5 1.2E-06 2.7E-11 84.6 10.8 101 131-240 58-158 (382)
170 PRK14896 ksgA 16S ribosomal RN 98.4 1.1E-06 2.4E-11 80.2 9.9 73 126-208 25-97 (258)
171 PRK10611 chemotaxis methyltran 98.4 7.3E-07 1.6E-11 83.0 8.7 114 130-243 115-265 (287)
172 TIGR02143 trmA_only tRNA (urac 98.4 1E-06 2.2E-11 84.3 9.8 96 131-239 198-310 (353)
173 PF10294 Methyltransf_16: Puta 98.4 1.7E-06 3.6E-11 74.6 10.0 108 129-240 44-156 (173)
174 KOG2899 Predicted methyltransf 98.4 1.1E-06 2.3E-11 79.4 8.9 109 129-239 57-208 (288)
175 PF12147 Methyltransf_20: Puta 98.4 6.2E-06 1.3E-10 76.4 14.1 123 113-240 120-249 (311)
176 PF01739 CheR: CheR methyltran 98.4 2E-06 4.2E-11 75.9 10.0 117 127-243 28-178 (196)
177 PF03602 Cons_hypoth95: Conser 98.4 1.5E-06 3.2E-11 75.9 8.8 109 129-243 41-156 (183)
178 KOG1661 Protein-L-isoaspartate 98.4 3.4E-06 7.4E-11 74.7 10.6 113 128-248 80-202 (237)
179 PRK00274 ksgA 16S ribosomal RN 98.4 1.7E-06 3.8E-11 79.6 9.1 65 125-198 37-101 (272)
180 PF04816 DUF633: Family of unk 98.3 5.4E-06 1.2E-10 73.6 11.5 111 134-250 1-114 (205)
181 TIGR00755 ksgA dimethyladenosi 98.3 5.5E-06 1.2E-10 75.3 11.9 73 122-204 21-93 (253)
182 KOG1541 Predicted protein carb 98.3 3.7E-06 7.9E-11 75.1 10.0 101 129-240 49-160 (270)
183 PF10672 Methyltrans_SAM: S-ad 98.3 3.5E-06 7.6E-11 78.4 10.4 107 129-240 122-238 (286)
184 COG4976 Predicted methyltransf 98.3 2.8E-07 6.1E-12 82.6 3.0 145 125-282 120-286 (287)
185 PF01170 UPF0020: Putative RNA 98.3 5.2E-06 1.1E-10 72.0 10.8 121 123-244 21-155 (179)
186 PF07091 FmrO: Ribosomal RNA m 98.3 2.1E-06 4.6E-11 78.0 8.4 151 38-211 28-180 (251)
187 COG2521 Predicted archaeal met 98.3 6.7E-07 1.5E-11 80.4 4.9 136 127-269 131-279 (287)
188 TIGR00478 tly hemolysin TlyA f 98.3 3.4E-06 7.4E-11 76.1 9.1 90 129-238 74-169 (228)
189 PRK00050 16S rRNA m(4)C1402 me 98.3 2.5E-06 5.5E-11 79.7 8.4 81 127-212 16-100 (296)
190 PRK09424 pntA NAD(P) transhydr 98.3 4E-06 8.7E-11 83.7 10.0 102 128-241 162-286 (509)
191 COG0144 Sun tRNA and rRNA cyto 98.2 1.6E-05 3.4E-10 76.2 13.0 112 127-240 153-288 (355)
192 PHA03412 putative methyltransf 98.2 7.6E-06 1.7E-10 74.1 10.2 99 130-238 49-160 (241)
193 KOG3420 Predicted RNA methylas 98.2 1.2E-06 2.7E-11 73.5 4.4 79 126-210 44-122 (185)
194 KOG2904 Predicted methyltransf 98.2 7.5E-06 1.6E-10 75.2 9.5 125 110-240 131-285 (328)
195 PF08123 DOT1: Histone methyla 98.2 7.1E-06 1.5E-10 72.8 9.0 113 122-239 34-157 (205)
196 KOG2915 tRNA(1-methyladenosine 98.2 1.3E-05 2.9E-10 73.5 10.5 104 127-238 102-207 (314)
197 COG0742 N6-adenine-specific me 98.2 2.4E-05 5.3E-10 68.4 11.6 110 129-242 42-156 (187)
198 COG1041 Predicted DNA modifica 98.2 2.6E-05 5.7E-10 74.0 12.6 109 127-241 194-311 (347)
199 KOG3010 Methyltransferase [Gen 98.1 5.4E-06 1.2E-10 74.8 6.8 100 132-238 35-135 (261)
200 KOG1499 Protein arginine N-met 98.1 1.2E-05 2.6E-10 76.0 9.1 103 129-237 59-164 (346)
201 COG1352 CheR Methylase of chem 98.1 2.8E-05 6E-10 71.8 11.3 114 130-243 96-244 (268)
202 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1E-05 2.2E-10 77.4 8.7 74 131-210 197-286 (352)
203 TIGR00308 TRM1 tRNA(guanine-26 98.1 2.3E-05 5E-10 75.6 10.8 101 131-240 45-147 (374)
204 KOG1975 mRNA cap methyltransfe 98.1 1.9E-05 4.2E-10 74.0 9.8 109 129-240 116-237 (389)
205 COG2265 TrmA SAM-dependent met 98.1 1.6E-05 3.5E-10 78.0 9.7 101 127-238 290-394 (432)
206 PF09243 Rsm22: Mitochondrial 98.1 3.9E-05 8.4E-10 70.9 11.7 104 129-238 32-137 (274)
207 COG2520 Predicted methyltransf 98.1 2.3E-05 4.9E-10 74.6 10.1 102 129-240 187-289 (341)
208 COG1063 Tdh Threonine dehydrog 98.1 1.7E-05 3.7E-10 75.6 9.1 102 129-243 167-272 (350)
209 TIGR00561 pntA NAD(P) transhyd 98.1 1.2E-05 2.5E-10 80.3 8.1 99 129-239 162-283 (511)
210 PRK01544 bifunctional N5-gluta 98.0 3.4E-05 7.4E-10 77.2 10.8 109 129-241 346-463 (506)
211 COG0686 Ald Alanine dehydrogen 98.0 1.6E-05 3.4E-10 74.4 7.7 103 129-240 166-268 (371)
212 PRK09880 L-idonate 5-dehydroge 98.0 2.8E-05 6.2E-10 73.1 9.5 105 122-240 161-266 (343)
213 COG1064 AdhP Zn-dependent alco 98.0 1.2E-05 2.6E-10 76.4 6.9 104 122-243 158-262 (339)
214 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 6.7E-05 1.5E-09 69.7 11.6 111 127-240 82-219 (283)
215 KOG0024 Sorbitol dehydrogenase 98.0 1.6E-05 3.4E-10 74.6 7.1 117 122-253 161-285 (354)
216 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 5.6E-05 1.2E-09 69.3 10.5 152 127-281 53-256 (256)
217 COG4262 Predicted spermidine s 97.9 0.00014 3E-09 69.5 12.5 111 129-242 288-409 (508)
218 COG3963 Phospholipid N-methylt 97.9 8E-05 1.7E-09 64.0 9.8 109 125-241 43-157 (194)
219 KOG2730 Methylase [General fun 97.9 8E-06 1.7E-10 72.9 3.8 105 130-240 94-202 (263)
220 COG0116 Predicted N6-adenine-s 97.9 3E-05 6.5E-10 74.5 7.3 82 158-240 256-344 (381)
221 PF01728 FtsJ: FtsJ-like methy 97.9 4.3E-05 9.3E-10 65.6 7.6 121 130-270 23-166 (181)
222 PF04672 Methyltransf_19: S-ad 97.9 6E-05 1.3E-09 69.3 8.4 107 131-240 69-190 (267)
223 KOG1500 Protein arginine N-met 97.9 0.00012 2.6E-09 69.2 10.4 107 125-237 172-279 (517)
224 COG0500 SmtA SAM-dependent met 97.8 0.00026 5.7E-09 54.3 10.6 102 134-241 52-156 (257)
225 KOG0820 Ribosomal RNA adenine 97.8 0.00011 2.3E-09 67.7 8.8 81 121-208 49-129 (315)
226 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00015 3.2E-09 75.4 10.7 84 157-241 257-348 (702)
227 PF05891 Methyltransf_PK: AdoM 97.8 9.9E-05 2.1E-09 65.9 8.0 106 130-240 55-161 (218)
228 COG0030 KsgA Dimethyladenosine 97.7 0.0002 4.3E-09 65.8 9.5 146 125-282 25-186 (259)
229 TIGR03439 methyl_EasF probable 97.7 0.00069 1.5E-08 64.1 13.5 166 115-282 55-264 (319)
230 COG4076 Predicted RNA methylas 97.7 0.00011 2.4E-09 64.4 7.2 140 131-281 33-188 (252)
231 PF06962 rRNA_methylase: Putat 97.7 0.0002 4.4E-09 59.9 8.5 85 158-243 1-95 (140)
232 cd00401 AdoHcyase S-adenosyl-L 97.7 0.00021 4.5E-09 69.9 9.6 108 110-240 179-289 (413)
233 KOG3191 Predicted N6-DNA-methy 97.7 0.00068 1.5E-08 59.1 11.5 106 130-240 43-168 (209)
234 COG2384 Predicted SAM-dependen 97.7 0.00085 1.8E-08 60.0 12.3 104 129-238 15-118 (226)
235 PF02737 3HCDH_N: 3-hydroxyacy 97.7 0.00022 4.8E-09 61.9 8.3 99 133-240 1-114 (180)
236 TIGR01444 fkbM_fam methyltrans 97.6 0.0002 4.4E-09 58.6 7.6 59 133-195 1-59 (143)
237 PRK10742 putative methyltransf 97.6 0.0003 6.5E-09 64.2 9.2 81 127-211 83-173 (250)
238 PRK07066 3-hydroxybutyryl-CoA 97.6 0.00038 8.3E-09 65.9 10.1 101 131-239 7-118 (321)
239 PF07279 DUF1442: Protein of u 97.6 0.0012 2.5E-08 59.0 11.9 107 129-241 40-150 (218)
240 cd08237 ribitol-5-phosphate_DH 97.6 0.00039 8.5E-09 65.5 9.3 97 127-240 160-256 (341)
241 PF05971 Methyltransf_10: Prot 97.5 0.00026 5.6E-09 66.3 7.4 119 84-208 58-183 (299)
242 PF05148 Methyltransf_8: Hypot 97.5 0.00021 4.5E-09 63.6 6.4 88 129-241 71-159 (219)
243 cd08230 glucose_DH Glucose deh 97.5 0.00042 9E-09 65.4 8.6 97 128-240 170-269 (355)
244 PRK05808 3-hydroxybutyryl-CoA 97.5 0.00088 1.9E-08 61.7 10.4 98 132-238 4-116 (282)
245 TIGR02822 adh_fam_2 zinc-bindi 97.5 0.00072 1.6E-08 63.5 9.6 97 123-240 158-254 (329)
246 PRK07819 3-hydroxybutyryl-CoA 97.4 0.0012 2.7E-08 61.2 10.8 100 132-240 6-121 (286)
247 TIGR00518 alaDH alanine dehydr 97.4 0.00032 7E-09 67.5 7.0 102 129-240 165-267 (370)
248 PF01861 DUF43: Protein of unk 97.4 0.0036 7.9E-08 56.8 13.2 109 123-239 37-148 (243)
249 PF03721 UDPG_MGDP_dh_N: UDP-g 97.4 0.00034 7.4E-09 61.0 6.4 101 132-240 1-120 (185)
250 TIGR03366 HpnZ_proposed putati 97.4 0.00072 1.6E-08 61.8 8.8 102 123-240 113-218 (280)
251 PRK06035 3-hydroxyacyl-CoA deh 97.4 0.00083 1.8E-08 62.2 9.1 98 132-238 4-119 (291)
252 KOG3178 Hydroxyindole-O-methyl 97.4 0.0022 4.8E-08 60.9 11.7 160 68-240 99-275 (342)
253 TIGR00006 S-adenosyl-methyltra 97.4 0.00098 2.1E-08 62.6 9.1 81 127-212 17-102 (305)
254 PF13679 Methyltransf_32: Meth 97.4 0.0017 3.8E-08 53.8 9.6 78 128-207 23-104 (141)
255 PRK11760 putative 23S rRNA C24 97.4 0.00083 1.8E-08 64.0 8.5 87 129-233 210-296 (357)
256 PF04989 CmcI: Cephalosporin h 97.3 0.00039 8.6E-09 61.7 5.8 106 129-240 31-147 (206)
257 PF07942 N2227: N2227-like pro 97.3 0.0018 4E-08 59.8 10.3 107 129-240 55-202 (270)
258 cd08239 THR_DH_like L-threonin 97.3 0.00074 1.6E-08 63.0 7.9 104 123-240 156-262 (339)
259 COG3897 Predicted methyltransf 97.3 0.00068 1.5E-08 59.7 6.8 104 128-241 77-180 (218)
260 PRK07530 3-hydroxybutyryl-CoA 97.3 0.0019 4.1E-08 59.8 10.2 98 132-238 5-117 (292)
261 TIGR02987 met_A_Alw26 type II 97.3 0.00078 1.7E-08 67.6 8.2 76 130-208 31-118 (524)
262 cd08281 liver_ADH_like1 Zinc-d 97.3 0.00089 1.9E-08 63.7 7.9 102 125-240 186-290 (371)
263 TIGR03201 dearomat_had 6-hydro 97.3 0.0012 2.6E-08 62.2 8.5 103 124-240 160-272 (349)
264 PRK08293 3-hydroxybutyryl-CoA 97.2 0.0024 5.3E-08 59.0 10.3 100 132-239 4-119 (287)
265 PF01262 AlaDh_PNT_C: Alanine 97.2 0.00019 4.1E-09 61.3 2.6 103 129-240 18-139 (168)
266 KOG1709 Guanidinoacetate methy 97.2 0.0031 6.8E-08 56.5 9.6 118 129-253 100-220 (271)
267 COG0293 FtsJ 23S rRNA methylas 97.1 0.0067 1.5E-07 53.9 11.3 137 125-281 39-200 (205)
268 PRK09260 3-hydroxybutyryl-CoA 97.1 0.0022 4.7E-08 59.3 8.7 100 132-239 2-116 (288)
269 TIGR03451 mycoS_dep_FDH mycoth 97.1 0.0018 3.8E-08 61.2 8.1 100 127-240 173-276 (358)
270 PLN02740 Alcohol dehydrogenase 97.1 0.0019 4.1E-08 61.8 8.3 101 126-240 194-300 (381)
271 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0034 7.3E-08 58.4 9.7 125 113-240 32-183 (311)
272 KOG2352 Predicted spermine/spe 97.0 0.0031 6.7E-08 62.2 9.0 126 103-239 25-160 (482)
273 PLN02545 3-hydroxybutyryl-CoA 97.0 0.0041 8.9E-08 57.6 9.5 98 132-238 5-117 (295)
274 TIGR01202 bchC 2-desacetyl-2-h 97.0 0.0018 3.8E-08 60.2 6.9 88 129-240 143-231 (308)
275 PRK05476 S-adenosyl-L-homocyst 97.0 0.0039 8.5E-08 61.2 9.3 109 109-240 188-299 (425)
276 PRK10309 galactitol-1-phosphat 97.0 0.0037 8E-08 58.6 8.9 101 126-240 156-260 (347)
277 TIGR02441 fa_ox_alpha_mit fatt 97.0 0.0049 1.1E-07 64.5 10.6 99 132-240 336-450 (737)
278 PF05219 DREV: DREV methyltran 97.0 0.0046 9.9E-08 56.8 8.8 94 130-239 94-187 (265)
279 PRK06130 3-hydroxybutyryl-CoA 96.9 0.0056 1.2E-07 57.0 9.7 98 132-237 5-112 (311)
280 cd08296 CAD_like Cinnamyl alco 96.9 0.0059 1.3E-07 56.9 9.6 102 125-240 158-259 (333)
281 TIGR00936 ahcY adenosylhomocys 96.9 0.0049 1.1E-07 60.2 9.3 98 120-240 182-282 (406)
282 PF00398 RrnaAD: Ribosomal RNA 96.9 0.0042 9.2E-08 56.8 8.2 104 125-239 25-133 (262)
283 PF02005 TRM: N2,N2-dimethylgu 96.8 0.0051 1.1E-07 59.6 8.7 105 130-241 49-155 (377)
284 KOG2187 tRNA uracil-5-methyltr 96.8 0.0019 4.1E-08 64.1 5.7 123 107-240 359-489 (534)
285 PLN03154 putative allyl alcoho 96.8 0.0058 1.2E-07 57.8 8.9 101 126-240 154-258 (348)
286 KOG3045 Predicted RNA methylas 96.8 0.0035 7.7E-08 57.6 6.9 85 129-240 179-264 (325)
287 PRK08306 dipicolinate synthase 96.8 0.005 1.1E-07 57.5 8.2 92 129-240 150-241 (296)
288 TIGR02825 B4_12hDH leukotriene 96.8 0.0081 1.7E-07 55.7 9.6 100 126-240 134-237 (325)
289 PLN02494 adenosylhomocysteinas 96.8 0.01 2.3E-07 58.8 10.5 147 67-240 184-341 (477)
290 PRK07502 cyclohexadienyl dehyd 96.8 0.008 1.7E-07 56.0 9.2 93 132-239 7-99 (307)
291 COG1062 AdhC Zn-dependent alco 96.8 0.006 1.3E-07 58.0 8.2 101 127-240 182-285 (366)
292 TIGR02818 adh_III_F_hyde S-(hy 96.7 0.0057 1.2E-07 58.2 8.2 101 126-240 181-287 (368)
293 PLN02586 probable cinnamyl alc 96.7 0.0085 1.8E-07 57.0 9.2 98 128-240 181-278 (360)
294 PRK11730 fadB multifunctional 96.7 0.0092 2E-07 62.3 10.0 100 132-240 314-428 (715)
295 cd08283 FDH_like_1 Glutathione 96.7 0.0076 1.7E-07 57.7 8.7 108 127-241 181-307 (386)
296 KOG1562 Spermidine synthase [A 96.7 0.0082 1.8E-07 56.0 8.5 167 94-271 93-288 (337)
297 PRK11154 fadJ multifunctional 96.7 0.01 2.2E-07 61.8 10.2 101 131-240 309-425 (708)
298 TIGR02437 FadB fatty oxidation 96.7 0.0079 1.7E-07 62.8 9.3 102 130-240 312-428 (714)
299 PLN02178 cinnamyl-alcohol dehy 96.7 0.0091 2E-07 57.3 9.0 96 129-240 177-273 (375)
300 PLN02827 Alcohol dehydrogenase 96.7 0.0068 1.5E-07 58.0 8.2 101 126-240 189-295 (378)
301 PLN02514 cinnamyl-alcohol dehy 96.6 0.014 3.1E-07 55.2 10.2 97 129-240 179-275 (357)
302 cd08300 alcohol_DH_class_III c 96.6 0.0082 1.8E-07 57.0 8.3 101 126-240 182-288 (368)
303 PF01269 Fibrillarin: Fibrilla 96.6 0.029 6.3E-07 50.5 11.1 118 113-239 56-177 (229)
304 KOG3201 Uncharacterized conser 96.6 0.0014 3.1E-08 56.2 2.7 111 129-242 28-142 (201)
305 cd08277 liver_alcohol_DH_like 96.6 0.0098 2.1E-07 56.4 8.7 100 126-240 180-286 (365)
306 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.6 0.0059 1.3E-07 61.2 7.3 100 130-239 4-119 (503)
307 PRK08268 3-hydroxy-acyl-CoA de 96.6 0.0052 1.1E-07 61.7 6.7 100 130-239 6-121 (507)
308 cd08238 sorbose_phosphate_red 96.6 0.016 3.4E-07 56.1 9.9 104 126-239 171-287 (410)
309 cd08285 NADP_ADH NADP(H)-depen 96.5 0.01 2.3E-07 55.6 8.4 102 125-240 161-266 (351)
310 PRK15182 Vi polysaccharide bio 96.5 0.026 5.5E-07 55.5 11.3 100 129-240 4-120 (425)
311 cd08233 butanediol_DH_like (2R 96.5 0.012 2.6E-07 55.1 8.7 102 125-240 167-272 (351)
312 TIGR02819 fdhA_non_GSH formald 96.5 0.013 2.9E-07 56.6 9.2 109 124-240 179-299 (393)
313 KOG1331 Predicted methyltransf 96.5 0.0049 1.1E-07 57.2 5.7 96 129-238 44-141 (293)
314 PRK07417 arogenate dehydrogena 96.5 0.015 3.2E-07 53.6 8.9 89 132-238 1-89 (279)
315 cd08301 alcohol_DH_plants Plan 96.5 0.015 3.2E-07 55.2 9.0 101 126-240 183-289 (369)
316 PRK15057 UDP-glucose 6-dehydro 96.4 0.025 5.5E-07 54.9 10.6 98 132-240 1-117 (388)
317 PRK06129 3-hydroxyacyl-CoA deh 96.4 0.034 7.4E-07 51.9 10.9 100 132-241 3-118 (308)
318 PF02254 TrkA_N: TrkA-N domain 96.4 0.037 8E-07 43.5 9.6 93 134-241 1-97 (116)
319 PRK07531 bifunctional 3-hydrox 96.4 0.026 5.7E-07 56.4 10.6 102 132-243 5-118 (495)
320 cd08294 leukotriene_B4_DH_like 96.4 0.017 3.6E-07 53.2 8.6 100 126-240 139-241 (329)
321 cd08254 hydroxyacyl_CoA_DH 6-h 96.4 0.02 4.3E-07 52.7 9.0 99 128-240 163-263 (338)
322 cd08293 PTGR2 Prostaglandin re 96.3 0.022 4.7E-07 53.1 9.2 95 132-240 156-254 (345)
323 cd08295 double_bond_reductase_ 96.3 0.024 5.2E-07 52.9 9.5 100 127-240 148-251 (338)
324 PRK10083 putative oxidoreducta 96.3 0.021 4.5E-07 53.1 9.0 103 125-240 155-259 (339)
325 cd05188 MDR Medium chain reduc 96.3 0.017 3.6E-07 51.0 7.9 99 129-241 133-233 (271)
326 PRK09422 ethanol-active dehydr 96.3 0.026 5.7E-07 52.3 9.2 102 126-240 158-261 (338)
327 PRK11064 wecC UDP-N-acetyl-D-m 96.2 0.036 7.7E-07 54.2 10.4 95 132-241 4-120 (415)
328 PRK00066 ldh L-lactate dehydro 96.2 0.049 1.1E-06 51.4 10.9 107 129-240 4-122 (315)
329 TIGR02440 FadJ fatty oxidation 96.2 0.022 4.8E-07 59.3 9.3 100 132-240 305-420 (699)
330 PLN02353 probable UDP-glucose 96.2 0.048 1E-06 54.4 11.2 104 132-240 2-127 (473)
331 cd08232 idonate-5-DH L-idonate 96.2 0.024 5.1E-07 52.6 8.6 100 126-239 161-261 (339)
332 PF04445 SAM_MT: Putative SAM- 96.2 0.0088 1.9E-07 54.2 5.3 82 127-212 70-161 (234)
333 COG0287 TyrA Prephenate dehydr 96.2 0.02 4.4E-07 53.2 7.9 95 131-239 3-97 (279)
334 COG1250 FadB 3-hydroxyacyl-CoA 96.2 0.017 3.7E-07 54.4 7.3 106 131-240 3-118 (307)
335 COG0275 Predicted S-adenosylme 96.1 0.03 6.4E-07 52.5 8.7 82 127-212 20-106 (314)
336 COG0604 Qor NADPH:quinone redu 96.1 0.031 6.7E-07 52.9 8.9 101 126-241 138-242 (326)
337 PF00107 ADH_zinc_N: Zinc-bind 96.1 0.0037 8E-08 50.0 2.3 88 142-243 2-92 (130)
338 cd08255 2-desacetyl-2-hydroxye 96.1 0.046 1E-06 49.1 9.7 97 126-240 93-190 (277)
339 PRK05562 precorrin-2 dehydroge 96.0 0.04 8.7E-07 49.6 8.9 103 129-252 23-129 (223)
340 cd05213 NAD_bind_Glutamyl_tRNA 96.0 0.036 7.8E-07 52.0 8.8 98 129-241 176-273 (311)
341 cd05297 GH4_alpha_glucosidase_ 96.0 0.0063 1.4E-07 59.7 3.8 101 133-236 2-116 (423)
342 cd08242 MDR_like Medium chain 96.0 0.045 9.8E-07 50.3 9.3 96 125-240 150-245 (319)
343 PF01795 Methyltransf_5: MraW 96.0 0.016 3.4E-07 54.7 6.2 80 127-211 17-102 (310)
344 TIGR01470 cysG_Nterm siroheme 95.9 0.034 7.5E-07 49.2 8.0 105 130-252 8-113 (205)
345 PRK06522 2-dehydropantoate 2-r 95.9 0.051 1.1E-06 49.9 9.3 94 132-238 1-98 (304)
346 KOG2352 Predicted spermine/spe 95.9 0.0091 2E-07 59.0 4.5 108 129-240 294-416 (482)
347 cd08231 MDR_TM0436_like Hypoth 95.9 0.053 1.2E-06 51.0 9.6 102 125-240 171-280 (361)
348 cd08291 ETR_like_1 2-enoyl thi 95.9 0.024 5.1E-07 52.5 7.1 96 130-240 142-242 (324)
349 COG5459 Predicted rRNA methyla 95.9 0.021 4.6E-07 54.6 6.7 109 128-240 111-225 (484)
350 TIGR03026 NDP-sugDHase nucleot 95.9 0.07 1.5E-06 51.9 10.6 100 132-240 1-120 (411)
351 COG1889 NOP1 Fibrillarin-like 95.8 0.12 2.6E-06 46.0 10.7 158 113-281 59-229 (231)
352 PRK08507 prephenate dehydrogen 95.8 0.044 9.6E-07 50.2 8.5 88 133-238 2-89 (275)
353 PF02056 Glyco_hydro_4: Family 95.8 0.063 1.4E-06 46.9 8.9 76 133-213 1-84 (183)
354 PLN02256 arogenate dehydrogena 95.8 0.061 1.3E-06 50.6 9.4 102 112-238 23-125 (304)
355 cd05292 LDH_2 A subgroup of L- 95.8 0.085 1.8E-06 49.5 10.4 101 132-240 1-116 (308)
356 PTZ00075 Adenosylhomocysteinas 95.8 0.016 3.4E-07 57.7 5.5 89 129-240 252-341 (476)
357 PRK12771 putative glutamate sy 95.7 0.023 5E-07 57.5 6.8 37 128-166 134-170 (564)
358 PRK03562 glutathione-regulated 95.7 0.075 1.6E-06 54.7 10.6 96 131-241 400-499 (621)
359 TIGR00872 gnd_rel 6-phosphoglu 95.7 0.052 1.1E-06 50.5 8.7 90 132-238 1-91 (298)
360 PTZ00082 L-lactate dehydrogena 95.7 0.066 1.4E-06 50.6 9.5 102 131-239 6-127 (321)
361 PF03141 Methyltransf_29: Puta 95.7 0.0055 1.2E-07 60.8 2.1 103 130-241 117-220 (506)
362 cd08245 CAD Cinnamyl alcohol d 95.6 0.089 1.9E-06 48.5 9.8 99 126-240 158-256 (330)
363 cd05285 sorbitol_DH Sorbitol d 95.6 0.064 1.4E-06 50.1 9.0 102 125-240 157-265 (343)
364 cd05293 LDH_1 A subgroup of L- 95.6 0.17 3.6E-06 47.8 11.7 105 130-240 2-120 (312)
365 PRK08655 prephenate dehydrogen 95.6 0.065 1.4E-06 52.8 9.3 91 132-240 1-92 (437)
366 KOG2940 Predicted methyltransf 95.6 0.018 3.9E-07 52.3 4.8 103 129-239 71-173 (325)
367 PRK12921 2-dehydropantoate 2-r 95.6 0.039 8.5E-07 50.8 7.3 94 132-238 1-100 (305)
368 PF13241 NAD_binding_7: Putati 95.6 0.072 1.6E-06 41.8 7.7 97 129-250 5-102 (103)
369 PTZ00142 6-phosphogluconate de 95.6 0.078 1.7E-06 52.8 9.6 97 132-238 2-99 (470)
370 PRK15076 alpha-galactosidase; 95.5 0.014 3E-07 57.5 4.1 79 132-213 2-86 (431)
371 PRK08229 2-dehydropantoate 2-r 95.5 0.039 8.5E-07 51.9 6.9 95 132-238 3-105 (341)
372 cd08286 FDH_like_ADH2 formalde 95.5 0.075 1.6E-06 49.5 8.7 100 127-240 163-266 (345)
373 COG1189 Predicted rRNA methyla 95.5 0.1 2.3E-06 47.3 9.1 101 125-239 73-177 (245)
374 PRK00094 gpsA NAD(P)H-dependen 95.4 0.067 1.5E-06 49.6 8.3 98 132-239 2-104 (325)
375 cd05279 Zn_ADH1 Liver alcohol 95.4 0.063 1.4E-06 50.9 8.2 101 126-240 179-285 (365)
376 KOG0023 Alcohol dehydrogenase, 95.4 0.066 1.4E-06 50.7 8.1 106 122-240 173-279 (360)
377 PLN02702 L-idonate 5-dehydroge 95.4 0.069 1.5E-06 50.4 8.4 102 125-240 176-285 (364)
378 cd08298 CAD2 Cinnamyl alcohol 95.4 0.094 2E-06 48.3 9.2 94 126-240 163-256 (329)
379 PRK08324 short chain dehydroge 95.4 0.35 7.6E-06 50.2 14.3 105 130-240 421-557 (681)
380 KOG1122 tRNA and rRNA cytosine 95.4 0.16 3.5E-06 49.7 10.8 110 128-240 239-371 (460)
381 TIGR02354 thiF_fam2 thiamine b 95.4 0.14 3E-06 45.2 9.8 102 130-238 20-143 (200)
382 PRK03659 glutathione-regulated 95.4 0.11 2.4E-06 53.2 10.3 96 131-241 400-499 (601)
383 cd08265 Zn_ADH3 Alcohol dehydr 95.4 0.057 1.2E-06 51.6 7.7 101 127-240 200-307 (384)
384 cd05291 HicDH_like L-2-hydroxy 95.4 0.18 4E-06 47.1 10.9 102 132-240 1-117 (306)
385 cd08278 benzyl_alcohol_DH Benz 95.4 0.083 1.8E-06 50.1 8.7 100 127-240 183-285 (365)
386 PTZ00117 malate dehydrogenase; 95.3 0.095 2.1E-06 49.5 8.9 101 130-238 4-120 (319)
387 PRK14106 murD UDP-N-acetylmura 95.3 0.18 3.8E-06 49.3 11.0 74 130-212 4-78 (450)
388 PHA01634 hypothetical protein 95.3 0.085 1.8E-06 43.8 7.2 72 129-209 27-99 (156)
389 PRK01438 murD UDP-N-acetylmura 95.3 0.07 1.5E-06 52.7 8.2 74 129-212 14-88 (480)
390 cd05288 PGDH Prostaglandin deh 95.2 0.13 2.9E-06 47.1 9.5 99 128-240 143-244 (329)
391 COG1004 Ugd Predicted UDP-gluc 95.2 0.19 4.2E-06 48.8 10.7 101 132-240 1-120 (414)
392 cd01339 LDH-like_MDH L-lactate 95.2 0.1 2.2E-06 48.6 8.6 97 134-238 1-113 (300)
393 PRK05708 2-dehydropantoate 2-r 95.2 0.073 1.6E-06 49.8 7.7 95 132-238 3-102 (305)
394 PF03807 F420_oxidored: NADP o 95.2 0.13 2.8E-06 39.0 7.8 87 133-237 1-91 (96)
395 TIGR00692 tdh L-threonine 3-de 95.2 0.077 1.7E-06 49.4 7.7 99 128-240 159-261 (340)
396 KOG4058 Uncharacterized conser 95.1 0.11 2.3E-06 44.3 7.7 112 113-237 54-169 (199)
397 PRK06223 malate dehydrogenase; 95.1 0.091 2E-06 48.9 8.1 101 132-239 3-118 (307)
398 PLN02712 arogenate dehydrogena 95.1 0.89 1.9E-05 47.3 16.0 91 129-238 367-458 (667)
399 cd05283 CAD1 Cinnamyl alcohol 95.1 0.15 3.3E-06 47.5 9.6 101 123-240 162-263 (337)
400 cd08282 PFDH_like Pseudomonas 95.1 0.13 2.8E-06 49.0 9.2 106 125-240 171-285 (375)
401 PRK09496 trkA potassium transp 95.1 0.19 4.1E-06 48.9 10.6 95 132-240 1-99 (453)
402 PRK12480 D-lactate dehydrogena 95.1 0.083 1.8E-06 50.2 7.8 89 130-239 145-233 (330)
403 PRK12769 putative oxidoreducta 95.1 0.029 6.3E-07 57.8 5.0 74 129-210 325-420 (654)
404 PRK01747 mnmC bifunctional tRN 95.1 0.073 1.6E-06 54.9 8.0 111 129-240 56-206 (662)
405 PRK10669 putative cation:proto 95.1 0.13 2.8E-06 52.1 9.5 95 131-240 417-515 (558)
406 cd08299 alcohol_DH_class_I_II_ 95.1 0.13 2.7E-06 49.1 9.0 100 126-240 186-292 (373)
407 PRK09599 6-phosphogluconate de 95.0 0.16 3.4E-06 47.3 9.4 92 132-239 1-93 (301)
408 cd05278 FDH_like Formaldehyde 95.0 0.1 2.2E-06 48.4 8.2 100 127-240 164-267 (347)
409 PLN02688 pyrroline-5-carboxyla 95.0 0.13 2.9E-06 46.5 8.7 86 132-237 1-92 (266)
410 PF02826 2-Hacid_dh_C: D-isome 95.0 0.047 1E-06 47.0 5.4 92 129-238 34-125 (178)
411 PRK13771 putative alcohol dehy 95.0 0.23 5E-06 45.8 10.4 97 126-240 158-255 (334)
412 cd05296 GH4_P_beta_glucosidase 95.0 0.23 5E-06 48.8 10.8 77 132-214 1-87 (419)
413 PRK02705 murD UDP-N-acetylmura 95.0 0.21 4.5E-06 49.0 10.5 74 133-213 2-79 (459)
414 PRK06545 prephenate dehydrogen 94.9 0.06 1.3E-06 51.5 6.4 92 132-238 1-93 (359)
415 KOG1501 Arginine N-methyltrans 94.9 0.071 1.5E-06 52.4 6.6 63 131-197 67-129 (636)
416 cd08264 Zn_ADH_like2 Alcohol d 94.8 0.16 3.5E-06 46.7 8.8 95 125-240 157-253 (325)
417 cd08234 threonine_DH_like L-th 94.8 0.25 5.4E-06 45.5 10.1 98 126-240 155-257 (334)
418 cd05298 GH4_GlvA_pagL_like Gly 94.8 0.14 3E-06 50.7 8.7 77 132-214 1-86 (437)
419 TIGR02853 spore_dpaA dipicolin 94.8 0.11 2.3E-06 48.5 7.6 91 129-239 149-239 (287)
420 PRK06718 precorrin-2 dehydroge 94.8 0.18 3.8E-06 44.6 8.6 105 129-252 8-113 (202)
421 cd08236 sugar_DH NAD(P)-depend 94.8 0.13 2.9E-06 47.6 8.3 100 127-240 156-258 (343)
422 PRK12809 putative oxidoreducta 94.8 0.043 9.3E-07 56.5 5.3 75 130-211 309-404 (639)
423 cd08284 FDH_like_2 Glutathione 94.7 0.17 3.6E-06 47.0 8.7 99 127-240 164-266 (344)
424 PF01210 NAD_Gly3P_dh_N: NAD-d 94.7 0.098 2.1E-06 44.0 6.5 101 133-244 1-106 (157)
425 PRK05442 malate dehydrogenase; 94.7 0.17 3.6E-06 48.1 8.7 107 129-240 2-130 (326)
426 PRK03369 murD UDP-N-acetylmura 94.7 0.086 1.9E-06 52.5 7.1 72 129-213 10-81 (488)
427 cd05290 LDH_3 A subgroup of L- 94.7 0.3 6.4E-06 46.0 10.2 104 133-240 1-119 (307)
428 COG4301 Uncharacterized conser 94.6 0.63 1.4E-05 42.9 11.7 111 128-239 76-192 (321)
429 PRK14806 bifunctional cyclohex 94.6 0.17 3.6E-06 52.8 9.4 90 132-238 4-95 (735)
430 TIGR02356 adenyl_thiF thiazole 94.6 0.41 8.8E-06 42.1 10.4 107 130-246 20-149 (202)
431 PRK06249 2-dehydropantoate 2-r 94.6 0.097 2.1E-06 48.9 6.8 97 129-238 3-104 (313)
432 PRK09496 trkA potassium transp 94.6 0.36 7.9E-06 47.0 11.0 97 129-239 229-329 (453)
433 cd08274 MDR9 Medium chain dehy 94.5 0.4 8.7E-06 44.5 10.8 97 125-240 172-273 (350)
434 COG1486 CelF Alpha-galactosida 94.5 0.14 3.1E-06 50.4 8.0 79 131-214 3-89 (442)
435 cd08248 RTN4I1 Human Reticulon 94.5 0.16 3.5E-06 47.1 8.2 95 130-240 162-257 (350)
436 PF03446 NAD_binding_2: NAD bi 94.5 0.23 5E-06 41.9 8.4 90 132-240 2-94 (163)
437 cd08244 MDR_enoyl_red Possible 94.5 0.25 5.4E-06 45.1 9.2 99 127-240 139-241 (324)
438 COG1748 LYS9 Saccharopine dehy 94.5 0.17 3.7E-06 49.2 8.4 71 132-210 2-76 (389)
439 PRK12490 6-phosphogluconate de 94.5 0.23 5E-06 46.2 9.0 91 133-239 2-93 (299)
440 PRK05786 fabG 3-ketoacyl-(acyl 94.5 0.55 1.2E-05 41.0 11.1 105 130-240 4-135 (238)
441 PRK12491 pyrroline-5-carboxyla 94.5 0.26 5.7E-06 45.4 9.3 91 132-239 3-95 (272)
442 TIGR01318 gltD_gamma_fam gluta 94.5 0.072 1.6E-06 52.8 5.9 36 129-166 139-174 (467)
443 PRK14618 NAD(P)H-dependent gly 94.4 0.15 3.2E-06 47.9 7.7 94 130-238 3-102 (328)
444 cd08261 Zn_ADH7 Alcohol dehydr 94.4 0.21 4.6E-06 46.3 8.7 100 127-240 156-258 (337)
445 cd01338 MDH_choloroplast_like 94.4 0.17 3.8E-06 47.9 8.1 107 130-240 1-128 (322)
446 cd05286 QOR2 Quinone oxidoredu 94.4 0.23 5.1E-06 44.5 8.7 97 127-240 133-235 (320)
447 cd05197 GH4_glycoside_hydrolas 94.4 0.18 4E-06 49.6 8.4 77 132-214 1-86 (425)
448 cd00650 LDH_MDH_like NAD-depen 94.4 0.21 4.6E-06 45.5 8.4 104 134-240 1-119 (263)
449 cd08260 Zn_ADH6 Alcohol dehydr 94.3 0.16 3.6E-06 47.2 7.7 100 127-240 162-264 (345)
450 KOG4589 Cell division protein 94.3 0.48 1E-05 41.9 9.9 138 129-284 68-228 (232)
451 COG1867 TRM1 N2,N2-dimethylgua 94.3 0.23 5E-06 47.8 8.6 101 131-240 53-154 (380)
452 COG0569 TrkA K+ transport syst 94.3 0.4 8.7E-06 43.0 9.8 85 132-229 1-89 (225)
453 cd08246 crotonyl_coA_red croto 94.3 0.1 2.2E-06 49.9 6.3 46 127-174 190-236 (393)
454 PLN02350 phosphogluconate dehy 94.3 0.19 4.2E-06 50.4 8.4 99 132-239 7-106 (493)
455 cd08287 FDH_like_ADH3 formalde 94.3 0.21 4.6E-06 46.4 8.3 101 126-240 164-268 (345)
456 PLN02712 arogenate dehydrogena 94.3 0.23 4.9E-06 51.6 9.2 90 129-237 50-140 (667)
457 PRK11199 tyrA bifunctional cho 94.2 0.59 1.3E-05 45.1 11.5 77 130-239 97-174 (374)
458 PF05711 TylF: Macrocin-O-meth 94.2 0.14 3.1E-06 46.8 6.8 109 129-241 73-213 (248)
459 cd08279 Zn_ADH_class_III Class 94.2 0.19 4E-06 47.5 7.9 101 126-240 178-282 (363)
460 PRK08217 fabG 3-ketoacyl-(acyl 94.2 0.29 6.3E-06 43.0 8.6 77 130-211 4-91 (253)
461 TIGR01915 npdG NADPH-dependent 94.2 0.61 1.3E-05 41.3 10.7 102 132-244 1-104 (219)
462 TIGR01759 MalateDH-SF1 malate 94.2 0.36 7.7E-06 45.8 9.6 108 129-240 1-129 (323)
463 cd08240 6_hydroxyhexanoate_dh_ 94.2 0.23 5E-06 46.3 8.3 98 129-240 174-274 (350)
464 PRK12779 putative bifunctional 94.1 0.12 2.6E-06 55.8 7.0 76 129-211 304-401 (944)
465 cd08289 MDR_yhfp_like Yhfp put 94.1 0.23 4.9E-06 45.6 8.0 95 130-241 146-244 (326)
466 KOG0022 Alcohol dehydrogenase, 94.1 0.1 2.3E-06 49.3 5.7 100 127-239 189-293 (375)
467 PRK13243 glyoxylate reductase; 94.1 0.12 2.5E-06 49.2 6.2 92 129-239 148-239 (333)
468 PRK11559 garR tartronate semia 94.1 0.22 4.7E-06 45.9 7.9 88 132-238 3-94 (296)
469 cd08241 QOR1 Quinone oxidoredu 94.1 0.35 7.5E-06 43.5 9.1 99 127-240 136-238 (323)
470 cd05289 MDR_like_2 alcohol deh 94.0 0.41 9E-06 42.8 9.5 94 128-240 142-238 (309)
471 PRK12826 3-ketoacyl-(acyl-carr 94.0 1.2 2.5E-05 39.0 12.2 75 130-210 5-91 (251)
472 PRK06940 short chain dehydroge 94.0 0.71 1.5E-05 41.9 11.1 101 132-238 3-123 (275)
473 COG0078 ArgF Ornithine carbamo 94.0 0.36 7.9E-06 45.3 9.1 86 125-218 147-237 (310)
474 PF01488 Shikimate_DH: Shikima 94.0 0.094 2E-06 43.1 4.8 79 128-215 9-88 (135)
475 KOG2798 Putative trehalase [Ca 94.0 1.2 2.6E-05 42.3 12.4 105 129-239 149-295 (369)
476 PLN02928 oxidoreductase family 93.9 0.092 2E-06 50.2 5.3 105 129-239 157-261 (347)
477 cd08243 quinone_oxidoreductase 93.9 0.45 9.8E-06 43.0 9.6 97 128-240 140-238 (320)
478 PRK06719 precorrin-2 dehydroge 93.9 0.41 8.8E-06 40.6 8.6 102 129-252 11-113 (157)
479 COG3288 PntA NAD/NADP transhyd 93.9 0.06 1.3E-06 50.7 3.7 107 127-239 160-280 (356)
480 cd01065 NAD_bind_Shikimate_DH 93.9 0.38 8.3E-06 39.5 8.3 101 129-241 17-117 (155)
481 COG2084 MmsB 3-hydroxyisobutyr 93.9 0.2 4.3E-06 46.8 7.1 91 132-240 1-95 (286)
482 PRK07679 pyrroline-5-carboxyla 93.8 0.41 9E-06 43.9 9.2 93 131-238 3-97 (279)
483 cd08297 CAD3 Cinnamyl alcohol 93.8 0.41 8.8E-06 44.4 9.3 100 127-240 162-265 (341)
484 PRK05479 ketol-acid reductoiso 93.8 0.27 5.9E-06 46.8 8.1 91 130-239 16-107 (330)
485 cd08292 ETR_like_2 2-enoyl thi 93.8 0.28 6E-06 44.8 8.0 100 126-240 135-238 (324)
486 cd08263 Zn_ADH10 Alcohol dehyd 93.8 0.22 4.7E-06 47.1 7.4 98 129-240 186-287 (367)
487 cd08290 ETR 2-enoyl thioester 93.8 0.19 4.2E-06 46.5 7.0 102 128-240 144-251 (341)
488 cd08276 MDR7 Medium chain dehy 93.8 0.26 5.7E-06 45.0 7.8 99 127-240 157-259 (336)
489 PRK12475 thiamine/molybdopteri 93.8 0.55 1.2E-05 44.8 10.1 101 130-240 23-148 (338)
490 PF02558 ApbA: Ketopantoate re 93.7 0.091 2E-06 43.3 4.3 95 134-239 1-100 (151)
491 PRK08818 prephenate dehydrogen 93.7 0.2 4.3E-06 48.5 7.1 79 131-238 4-86 (370)
492 PRK05396 tdh L-threonine 3-deh 93.7 0.21 4.6E-06 46.4 7.1 98 129-240 162-263 (341)
493 PLN02602 lactate dehydrogenase 93.7 0.73 1.6E-05 44.2 10.9 104 132-240 38-154 (350)
494 cd00300 LDH_like L-lactate deh 93.7 0.55 1.2E-05 43.9 9.8 100 134-240 1-115 (300)
495 PRK10637 cysG siroheme synthas 93.6 0.27 5.9E-06 48.7 8.0 103 129-252 10-116 (457)
496 COG0493 GltD NADPH-dependent g 93.6 0.16 3.4E-06 50.5 6.2 77 129-210 121-216 (457)
497 cd01487 E1_ThiF_like E1_ThiF_l 93.6 0.6 1.3E-05 40.1 9.1 99 133-240 1-121 (174)
498 cd08235 iditol_2_DH_like L-idi 93.5 0.32 6.9E-06 45.1 7.9 101 126-240 161-265 (343)
499 cd01491 Ube1_repeat1 Ubiquitin 93.4 1.7 3.7E-05 40.6 12.6 109 130-250 18-147 (286)
500 PRK00141 murD UDP-N-acetylmura 93.4 0.27 5.8E-06 48.8 7.6 71 130-212 14-84 (473)
No 1
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=100.00 E-value=4.9e-77 Score=545.03 Aligned_cols=271 Identities=51% Similarity=0.801 Sum_probs=168.2
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHhhcCCcccccccCchhHHHHHHHHHHHHHHHhHhhhHHHHH
Q 042119 12 QIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFAT 91 (286)
Q Consensus 12 ~~~~~~~i~~i~~~~~~i~~l~~l~p~~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~~A~ 91 (286)
+.++|.+|++|+++|++|++|+||+|||+||+||++||++|.+++++|++++++++++++++|+++|++||+.||.|||+
T Consensus 2 ~~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~ 81 (276)
T PF03059_consen 2 NKEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAK 81 (276)
T ss_dssp ----------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH
Q 042119 92 FLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV 171 (286)
Q Consensus 92 ~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~ 171 (286)
.+++.++||++|+.||||+||++|+++|++++.......|+||+||||||+|+|+++||+++.+++.|+|||+||+|++.
T Consensus 82 ~l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 82 RLLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp HHHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred HHHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999877767789999999999999999999877789999999999999999
Q ss_pred HHHHHH-hcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecc
Q 042119 172 ARSIVA-SDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYP 250 (286)
Q Consensus 172 Ar~~~~-~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp 250 (286)
|+++++ ..| ++++|+|+++|+.+...++.+||+||+|++|||++++|.+++++++++|+||++|++|+++|+|+|+||
T Consensus 162 a~~lv~~~~~-L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp 240 (276)
T PF03059_consen 162 ARRLVASDLG-LSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYP 240 (276)
T ss_dssp HHHHHH---H-H-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-
T ss_pred HHHHHhhccc-ccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCC
Confidence 999999 567 789999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCcEEEEEecCcccceeeeEEEeecC
Q 042119 251 VVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQ 283 (286)
Q Consensus 251 ~v~~~~l~gf~~~~~~~P~~~vinsvi~~r~~~ 283 (286)
+++++++.||+++.++||+++|||||||+||+.
T Consensus 241 ~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 241 VVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp ---TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred CCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 999999999999999999999999999999964
No 2
>PLN03075 nicotianamine synthase; Provisional
Probab=100.00 E-value=9.4e-75 Score=534.62 Aligned_cols=274 Identities=58% Similarity=0.912 Sum_probs=262.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHhhcCCcccccccCchhHHHHHHHHHHHHHHHhHhhhH
Q 042119 8 SCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLEL 87 (286)
Q Consensus 8 ~~~~~~~~~~~i~~i~~~~~~i~~l~~l~p~~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~ 87 (286)
+++..+++|.+|++|+++|++|++|++|+||++||+||++||++|+++.++|++.+++++|++|++|+++|++||+.||.
T Consensus 1 ~~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~ 80 (296)
T PLN03075 1 SEEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEA 80 (296)
T ss_pred CccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH
Q 042119 88 EFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA 167 (286)
Q Consensus 88 ~~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ 167 (286)
|||+.+++.++||++|+.||||+||++|.+.|++.|......++++|+||||||+|+|+++++++++|+++|+|||+|++
T Consensus 81 ~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ 160 (296)
T PLN03075 81 HFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS 160 (296)
T ss_pred HHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 99999999999999999999999999999999999988877799999999999999999999987889999999999999
Q ss_pred HHHHHHHHHHh-cCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119 168 ANDVARSIVAS-DAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA 246 (286)
Q Consensus 168 ai~~Ar~~~~~-~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~ 246 (286)
+++.||+++++ .| +.++|+|+++|+.+....+++||+||.+++++|++++|.++++++++.|+|||++++|++||+|+
T Consensus 161 ai~~Ar~~~~~~~g-L~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~ 239 (296)
T PLN03075 161 ANDVARRLVSSDPD-LSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA 239 (296)
T ss_pred HHHHHHHHhhhccC-ccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHh
Confidence 99999999965 78 78999999999988655567899999999999999999999999999999999999999999999
Q ss_pred eecccCCcccccCcEEEEEecCcccceeeeEEEeec
Q 042119 247 FLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNS 282 (286)
Q Consensus 247 ~lyp~v~~~~l~gf~~~~~~~P~~~vinsvi~~r~~ 282 (286)
||||+|++++++||+++.++||+++|||||||+||+
T Consensus 240 ~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred hcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEee
Confidence 999999999999999999999999999999999996
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=7.9e-18 Score=132.80 Aligned_cols=107 Identities=23% Similarity=0.399 Sum_probs=88.0
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceeeh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFL 208 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~~ 208 (286)
|+.+|||||||+ |..++.+++ ..++++|+|+|+||++++.|++.+.+.+ ..++|+|+++|+ .... ....||+|+.
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 578999999996 677788887 4699999999999999999999997777 689999999999 3222 3357999997
Q ss_pred hh-hc-cC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AA-LV-GM-SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aa-lv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.. .. .+ +.+++.++++++.+.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 76 11 11 22678899999999999999999875
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=1e-15 Score=145.13 Aligned_cols=159 Identities=15% Similarity=0.277 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHhHhhhHHHHHHhcCCCCcccccccCcCccc------h-hhhhHHHHHHHHhcCC-----CCCCE
Q 042119 66 EVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGN------Y-VKLSKLEYTILSENGV-----VQPKK 133 (286)
Q Consensus 66 ~~~~l~~~l~~l~~~~e~~lE~~~A~~l~~~~~p~~~L~~fpy~~n------y-~~l~~~E~~~l~~~~~-----~~~~~ 133 (286)
...++.++++..+.+....+|..|.+.+. +.||+. + ....++....+...++ .++.+
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h-----------~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~ 121 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMH-----------HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKR 121 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcce-----------eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCe
Confidence 44567788899998888888888766553 233322 1 1222232334444455 67899
Q ss_pred EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhcc
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVG 213 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg 213 (286)
|||||||+ |..+..+++. .|++|+|||+|+.+++.|+++++..| +.++++|+++|+.+.+...+.||+|+.....
T Consensus 122 VLDiGCG~-G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~- 196 (340)
T PLN02244 122 IVDVGCGI-GGSSRYLARK--YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMESG- 196 (340)
T ss_pred EEEecCCC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCch-
Confidence 99999996 5667788873 48999999999999999999999888 6789999999998877766789999854322
Q ss_pred CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 214 MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 214 ~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+.+++.++++++.+.|||||.+++.+
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 234678899999999999999998854
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=6e-16 Score=139.67 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=94.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
+..+|.+|||||||+ |--++.+++. .+.++|+++|+|+.|++.|++.....| ... ++|++||++++|++.+.||+|
T Consensus 48 ~~~~g~~vLDva~GT-Gd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LPf~D~sFD~v 123 (238)
T COG2226 48 GIKPGDKVLDVACGT-GDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLPFPDNSFDAV 123 (238)
T ss_pred CCCCCCEEEEecCCc-cHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCCCCCCccCEE
Confidence 445899999999996 7888999984 558999999999999999999999988 454 999999999999999999999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.++..+- ...++.++|+++.|+|||||++++-+
T Consensus 124 t~~fglr-nv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 124 TISFGLR-NVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred Eeeehhh-cCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 8775431 23688899999999999999988854
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=7.8e-16 Score=138.84 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
...++.+|||+|||+ |..+..++++..++++|+++|+|++|++.|++.+...|. .+|+|+++|+.+++.+.+.||+|
T Consensus 44 ~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPFPDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEE
T ss_pred CCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcCCCCceeEE
Confidence 457889999999997 677788887556778999999999999999999999883 49999999999999887889999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+++..+ .+.+++.+.+++++|+|||||.+++-+
T Consensus 121 ~~~fgl-rn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 121 TCSFGL-RNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEES-G-GG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EHHhhH-HhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 866543 133578889999999999999988854
No 7
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.64 E-value=7.8e-16 Score=136.34 Aligned_cols=107 Identities=20% Similarity=0.410 Sum_probs=94.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE 202 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~ 202 (286)
..+++||+||+| .|+|+++||+...++++|+++|+|++..+.|++.+++.| ++++|+++.||+.+....+ +.
T Consensus 44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 578999999999 699999999854458999999999999999999999999 8999999999998865432 36
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
||+||+++-. .++...++.+.+.|+|||++++.+.
T Consensus 122 fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 122 FDFVFIDADK----RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred eeEEEEcccc----cchhhHHHHHhhhccCCeEEEEccc
Confidence 9999999864 7888999999999999999999984
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=2.9e-15 Score=125.42 Aligned_cols=110 Identities=22% Similarity=0.352 Sum_probs=90.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~ 207 (286)
+.+.+|||+|||+ |..+..++++..++++|+|+|+|+++++.|++.++..| +. +++|+++|+.+++..+ +.||+|+
T Consensus 2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEE
Confidence 4678999999996 66678888435789999999999999999999999999 44 9999999999855223 6899999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
..... .+..+...+++.+.+.|++||++++.+..
T Consensus 79 ~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVL-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 76543 23357778999999999999999998754
No 9
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.62 E-value=2.4e-15 Score=134.10 Aligned_cols=106 Identities=21% Similarity=0.414 Sum_probs=96.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccchhhc--CCCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQ--LGEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~--l~~fD 204 (286)
.++++||+||++ +|+|++|||.. .+ .+++|+||++|++.+.|++++++.| ++++|+.+. +|+.+.... .+.||
T Consensus 58 ~~~k~iLEiGT~-~GySal~mA~~-l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTA-IGYSALWMALA-LPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecc-cCHHHHHHHhh-CCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHHHHHHhccCCCcc
Confidence 689999999998 79999999994 55 8899999999999999999999999 899999999 599887775 35799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+||+++-. .++.++++.+.+.|+|||++++.+.
T Consensus 135 liFIDadK----~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 135 LVFIDADK----ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEEEeCCh----hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 99999864 6888999999999999999999984
No 10
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.62 E-value=3.7e-15 Score=134.45 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=93.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE 202 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~ 202 (286)
.++++||+|||| .|++++++|+...++++|+++|+|+++++.|++++++.| ++++|+++.+|+.+....+ +.
T Consensus 67 ~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 578999999999 599999999854457899999999999999999999999 7899999999998765432 47
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
||+||+++.. +++..+++.+.+.++|||++++.+.
T Consensus 145 fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 145 FDFAFVDADK----PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCEEEECCCH----HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9999998754 6788899999999999999999773
No 11
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=1.1e-14 Score=127.29 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=87.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
+++.+|||||||+ |..++.+|+ ..++++|+++|+++++++.|++.++..| +. +++|+++|+.+... .+.||+|+.
T Consensus 44 ~~g~~VLDiGcGt-G~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGA-GFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCC-CHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence 4589999999996 777888887 4689999999999999999999999999 54 59999999988655 457999997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.+. .+...+++.+.+.|+|||.+++-..
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 119 RAV-----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ccc-----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 653 3556899999999999999988753
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=1.2e-14 Score=127.43 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=86.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
...++.+|||+|||+ |..++.||+ .|.+|+++|+|+++++.|++.++..+ + .++++.++|+.+.+.+ +.||+|
T Consensus 27 ~~~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I 99 (197)
T PRK11207 27 KVVKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFI 99 (197)
T ss_pred ccCCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEE
Confidence 345678999999996 778899998 68999999999999999999999888 4 5699999998765443 469999
Q ss_pred ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+..... ..+.++...+++.+.+.|+|||.+++-
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 865333 235567889999999999999986543
No 13
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=1.3e-14 Score=131.42 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=97.9
Q ss_pred CcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 042119 106 FPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEG 184 (286)
Q Consensus 106 fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~ 184 (286)
-|.|++...++..=. +....++.+|||||||+ |..++.+++. ..++++|+++|+|++|++.|++.++..| ...
T Consensus 36 ~p~y~~~~~~~~~~~----~~~~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~ 109 (247)
T PRK15451 36 VPGYSNIISMIGMLA----ERFVQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APT 109 (247)
T ss_pred CCChHHHHHHHHHHH----HHhCCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCC
Confidence 377776666644322 12245778999999996 5556666653 2489999999999999999999999888 677
Q ss_pred CeEEEEccccchhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 185 RMKFLTRDIMEVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 185 ~i~f~~~D~~~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+++++++|+.+.+. ..||+|+..... ..+.+++..+++++.+.|+|||.+++.+
T Consensus 110 ~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 110 PVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999977553 469998865332 3455678899999999999999999875
No 14
>PLN02476 O-methyltransferase
Probab=99.58 E-value=1.3e-14 Score=133.91 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=95.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE 202 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~ 202 (286)
.++++||+||+| .|++++++|+...++++|+++|+++++.+.|++++++.| ++++|+++.||+.+....+ +.
T Consensus 117 ~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 678999999999 699999999854457899999999999999999999999 7899999999998876543 46
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
||+||+++-. .++.++++.+.+.|+|||++++.+.
T Consensus 195 FD~VFIDa~K----~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDADK----RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999999753 7889999999999999999999874
No 15
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.58 E-value=1.2e-14 Score=132.24 Aligned_cols=107 Identities=15% Similarity=0.256 Sum_probs=96.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-------C
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-------G 201 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-------~ 201 (286)
..+++||+||++ .|+|+++||+...++++|+++|++++..+.|++.+++.| +.++|++++||+.+....+ +
T Consensus 78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCC
Confidence 578999999998 799999999855568999999999999999999999999 7999999999998876543 4
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.||+||+++-. ..+...++.+.+.|+|||+|++.+.
T Consensus 156 ~fD~iFiDadK----~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 156 TFDFIFVDADK----DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cccEEEecCCH----HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 79999999864 7888999999999999999999874
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.56 E-value=3.6e-14 Score=123.28 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
++++|||||||+ |..++.+|+ ..++++|+++|+|+++++.+++.+++.| + ++++++++|+.++. ..+.||+|+..
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence 478999999996 677888886 4678999999999999999999999998 4 46999999998753 23579999876
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+ + .+...+++.+.+.|+|||++++...
T Consensus 117 ~-~----~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 117 A-L----ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred h-h----hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5 2 3445688999999999999998753
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=1.6e-14 Score=109.41 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=77.7
Q ss_pred EEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccC
Q 042119 135 AFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGM 214 (286)
Q Consensus 135 L~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~ 214 (286)
||||||+ |.++..++++ ++.+|+++|+++++++.+++..... ++++.++|+.+++.+.+.||+|+......+
T Consensus 1 LdiG~G~-G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGT-GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TT-SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceee
Confidence 7999995 8888888883 7999999999999999999986544 456999999999888789999997665533
Q ss_pred ChhHHHHHHHHHHhhccCCcEEEE
Q 042119 215 SKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 215 ~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
- ++..++++++.|.|||||++++
T Consensus 73 ~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 L-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-cCHHHHHHHHHHHcCcCeEEeC
Confidence 3 7888999999999999999975
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=5.9e-14 Score=127.47 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=88.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~ 207 (286)
.++.+|||||||+ |..+..+|+ .|.+|+++|+|+++++.|++.+...| +.++++|+++|+.++.. ..+.||+|+
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 5678999999996 677888888 58999999999999999999999998 67899999999987653 235799999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
......+ .+++..+++++.+.|||||.+++.
T Consensus 118 ~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEW-VADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEE
Confidence 7654422 245668999999999999999875
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=8.3e-14 Score=125.15 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=95.3
Q ss_pred cCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119 107 PYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHH-LTSTHFDNFDIDEAANDVARSIVASDAEFEGR 185 (286)
Q Consensus 107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~ 185 (286)
|+|.+....+.. +......++.+|||||||+ |..+..++++. .++++|+|+|+|+++++.|++.++..+ ...+
T Consensus 34 p~y~~~~~~~~~----l~~~~~~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~ 107 (239)
T TIGR00740 34 PGYSNIITAIGM----LAERFVTPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIP 107 (239)
T ss_pred CCHHHHHHHHHH----HHHHhCCCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCC
Confidence 555554444321 2222335778999999997 56667777632 378999999999999999999998877 5678
Q ss_pred eEEEEccccchhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 186 MKFLTRDIMEVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 186 i~f~~~D~~~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++|+++|+.+.+. ..+|+|+....+ ..+.+++.++++++.+.|+|||.+++.+
T Consensus 108 v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 108 VEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9999999977553 468987754333 3355678899999999999999999975
No 20
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=6.6e-14 Score=128.10 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=87.8
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCCCCCeEEEEccccchhhcCCCcc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS--DAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.+.++.+|||||||+ |..+..++++..+.++|+|+|+|++|++.|++.... .+ ..++++|+++|+.+++.+.+.||
T Consensus 70 ~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 70 GAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCCCCCCCEe
Confidence 456789999999997 556677877333567999999999999999987542 22 23689999999998877666899
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+....+. ..+++.++++++.++|||||.+++.+
T Consensus 148 ~V~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 148 AITMGYGLR-NVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEEecccc-cCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 998654332 23578899999999999999998865
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=6.3e-14 Score=128.34 Aligned_cols=112 Identities=24% Similarity=0.360 Sum_probs=90.4
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
++....+.++.+|||||||+ |..+..+|+. .+++|+++|+|+++++.|++.... .++++|+++|+.+.+.+.+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCC
Confidence 34455678889999999996 5566777763 588999999999999999997543 2589999999987665556
Q ss_pred Ccceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.||+|+.. ++.+++.+++.++++++++.|||||.+++.+
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 89999963 3445555688999999999999999999875
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=1.3e-13 Score=122.75 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=91.0
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
...+.++++|||||||+ |..+..+++...++++|+|+|+++++++.|++.+...+ + ++++++++|+.+.+.+.+.||
T Consensus 40 ~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred hcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCcc
Confidence 34557789999999996 66667788743467899999999999999999998887 4 689999999987665556899
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+....+. ..++..++++++.+.|+|||.+++.+
T Consensus 117 ~V~~~~~l~-~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 117 YVTIGFGLR-NVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEEecccc-cCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 998664432 23566789999999999999998865
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.54 E-value=1.4e-13 Score=109.78 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=85.5
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh-hcCCCcc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK-EQLGEYD 204 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~-~~l~~fD 204 (286)
..+.++++|+|+|||+ |..+..+++ ..++.+|+++|+++.+++.|++.++..+ + .+++++++|+.+.. .....||
T Consensus 15 ~~~~~~~~vldlG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGS-GSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred cCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCCCC
Confidence 3456678999999997 566677777 4677999999999999999999999888 3 57999999986532 2235799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+..... ....++++++.+.|+|||.+++..
T Consensus 91 ~v~~~~~~----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGSG----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCcc----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 99975432 345689999999999999998753
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=1.3e-13 Score=127.62 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=84.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++.+|||||||. |..++.+|+ .|.+|+++|+|+++++.+++.++..+ + ++++.++|+.+... .+.||+|+.
T Consensus 119 ~~~~~vLDlGcG~-G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQ-GRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence 3567999999995 788899998 68999999999999999999999888 4 69999999865433 347999986
Q ss_pred hhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.... ..+.+....+++++.+.|+|||++++-
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5332 335567889999999999999996653
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=1.2e-13 Score=126.25 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=90.3
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
.+.++++||+||||+ |..++.+++...+..+|+++|+++++++.|++..+..| + ++++|+.+|+.+++...+.||+|
T Consensus 74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEE
Confidence 346889999999997 77777777643456789999999999999999999988 4 58999999998776555579999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+......+ .+++.++++++.+.|||||++++.+
T Consensus 151 i~~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 151 ISNCVINL-SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEcCcccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 86544332 3577789999999999999999865
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.52 E-value=1.1e-13 Score=127.69 Aligned_cols=112 Identities=18% Similarity=0.328 Sum_probs=84.9
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
.+.+.++++|.+||||||| -|-.++.+|++ .|++|+||++|++..+.|++.++..| +.+++++..+|..+++.
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG------
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccCC---
Confidence 4556678999999999999 57778889984 49999999999999999999999999 89999999999877554
Q ss_pred Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.||.|+.--.+ ++..++...+++.+.+.|+|||++++..
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 89988743222 4455788899999999999999998853
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=1.2e-13 Score=120.93 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=83.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
...++.+|||||||. |..++.+|+ .|.+|+++|+|+++++.+++.++..| + ++++.++|+.+.+.+ +.||+|
T Consensus 27 ~~~~~~~vLDiGcG~-G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQ-GRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred ccCCCCcEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCCEE
Confidence 345678999999995 788899998 68999999999999999999998888 4 388888887543332 479999
Q ss_pred ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+..... ..+.++...+++.+.+.|+|||++++-
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 854332 335567789999999999999985543
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.52 E-value=1.1e-13 Score=130.53 Aligned_cols=107 Identities=12% Similarity=0.188 Sum_probs=88.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++.+|||||||+ |..+..+|+ .|++|+|||+++++++.|++..+..+ ...+++|+++|+.+++...+.||+|+.
T Consensus 130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence 4678999999996 666778887 78999999999999999999877666 457899999999887765568999986
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
...+. +..+...+++++.+.|||||.+++.+.
T Consensus 205 ~~vLe-Hv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 205 LEVIE-HVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hhHHH-hcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 65442 234677899999999999999998763
No 29
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.51 E-value=2.5e-13 Score=120.96 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=97.0
Q ss_pred HHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH
Q 042119 91 TFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND 170 (286)
Q Consensus 91 ~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~ 170 (286)
++-.+++.||..-+..|.+..+.. +....++.|||++||| .|..+++||+ .|.+|||+|+|+.|++
T Consensus 5 ~ry~~~~~~w~~~~p~~~l~~~~~----------~l~~~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~Ai~ 70 (213)
T TIGR03840 5 ERWQEGQIGFHQSEVNPLLVKHWP----------ALGLPAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIAVE 70 (213)
T ss_pred HHHhcCCCCCccCCCCHHHHHHHH----------hhCCCCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHHHH
Confidence 333445678876556665433322 1122466799999999 5899999998 7999999999999999
Q ss_pred HHHHHHHhcCC-------------CCCCeEEEEccccchhhc-CCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcE
Q 042119 171 VARSIVASDAE-------------FEGRMKFLTRDIMEVKEQ-LGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGI 235 (286)
Q Consensus 171 ~Ar~~~~~~g~-------------l~~~i~f~~~D~~~~~~~-l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~ 235 (286)
.+.+. .|. -..+|+|.++|+.++... .+.||.||-.. +++.+.+.+.++++.+.+.|||||+
T Consensus 71 ~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 71 QFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred HHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 86442 220 024799999999886654 34699998654 3466788899999999999999997
Q ss_pred EEEe
Q 042119 236 LLVR 239 (286)
Q Consensus 236 lv~r 239 (286)
+++-
T Consensus 148 ~ll~ 151 (213)
T TIGR03840 148 QLLI 151 (213)
T ss_pred EEEE
Confidence 5554
No 30
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=4.8e-13 Score=118.05 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=86.4
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
..+.++.+|||||||+ |+.+..+|+...++++|+++|+++++++.|++.+++.| +..+++++++|+.+.....+.||.
T Consensus 68 l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~~~~fD~ 145 (205)
T PRK13944 68 IEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEKHAPFDA 145 (205)
T ss_pred cCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCccCCCccE
Confidence 3457789999999996 66667777733346799999999999999999999999 667899999999765444468999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA 246 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~ 246 (286)
|++..... .+.+++.+.|+|||++++-...+..+
T Consensus 146 Ii~~~~~~-------~~~~~l~~~L~~gG~lvi~~~~~~~~ 179 (205)
T PRK13944 146 IIVTAAAS-------TIPSALVRQLKDGGVLVIPVEEGVGQ 179 (205)
T ss_pred EEEccCcc-------hhhHHHHHhcCcCcEEEEEEcCCCce
Confidence 99775432 23356889999999998855433334
No 31
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=7.3e-14 Score=125.26 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=90.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-++.+||||||| +|.-+..||+ .|+.|||+|+++++++.|+..+...|. .++|.++.+.++..+-+.||+|..
T Consensus 58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEE
Confidence 478999999999 7999999999 889999999999999999999998883 488999999887765568999986
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.-.+. +-++...++..+.+.+||||.+++++.
T Consensus 131 mEVlE-Hv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 131 MEVLE-HVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhHHH-ccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 65543 235666799999999999999999763
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=1.2e-13 Score=107.82 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=77.4
Q ss_pred EEEeccCCChhhHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh-h
Q 042119 134 VAFVGSGPMPLTSIIMAKHHL--TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA-A 210 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a-a 210 (286)
|||+|||+ |..+..+++..- +..+++++|+|+++++.|++.....+ . +++|+++|+.+++...+.||+|+.. .
T Consensus 1 ILDlgcG~-G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGT-GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TT-SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCC-cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 79999997 566666766321 34899999999999999999998877 3 8999999999988777789999983 3
Q ss_pred -hccCChhHHHHHHHHHHhhccCCc
Q 042119 211 -LVGMSKEEKLTILGHIRKYMKDGG 234 (286)
Q Consensus 211 -lvg~~~~~k~~vl~~l~~~l~pgg 234 (286)
+...+.++..++++++.++++|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 335677888999999999999998
No 33
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=5.5e-13 Score=116.83 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=93.9
Q ss_pred hhHHHHHHH--HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 115 LSKLEYTIL--SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 115 l~~~E~~~l--~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
+.+.|..++ .+..+.++.+|+|+|||+ |.-++.+|+...++.+|+++|+++++++.|++.++..| +.++++++++|
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d 100 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGE 100 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEec
Confidence 455555533 455678899999999998 55566676633467899999999999999999999998 56899999999
Q ss_pred ccchhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 193 IMEVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 193 ~~~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+..... ..||.||.... .....++++.+.+.|+|||++++..
T Consensus 101 ~~~~l~~~~~~~D~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 101 APEILFTINEKFDRIFIGGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred hhhhHhhcCCCCCEEEECCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 97755444 47999997432 2455679999999999999998743
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.48 E-value=9e-13 Score=116.71 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=87.6
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
...++.+||+||||+ |..+..+++. .+ ..+|+++|+++.+++.|++.+...+ +..+++|+.+|+.+.+...+.||+
T Consensus 48 ~~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 48 GVRPGDKVLDLACGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred CCCCCCeEEEeCCCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccE
Confidence 345678999999998 5566677763 44 5999999999999999999988766 567899999999876655567999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+....++ ...+...+++.+.+.|+|||.+++.+
T Consensus 125 I~~~~~l~-~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 125 VTIAFGLR-NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEecccc-cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 98654432 23466789999999999999998754
No 35
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=8.7e-13 Score=117.91 Aligned_cols=127 Identities=13% Similarity=0.180 Sum_probs=95.0
Q ss_pred CCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 042119 95 KIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS 174 (286)
Q Consensus 95 ~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~ 174 (286)
+++.+|..-+.+|++..|... ....++.|||++||| .|..+++||+ .|.+|+|||+|+.|++.+.+
T Consensus 12 ~~~~~~~~~~p~~~L~~~~~~----------~~~~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~ 77 (218)
T PRK13255 12 ENQIGFHQEEVNPLLQKYWPA----------LALPAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAVEQFFA 77 (218)
T ss_pred CCCCCCCCCCCCHHHHHHHHh----------hCCCCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHHHHHHH
Confidence 345567655667765544321 122456799999999 6899999998 89999999999999998743
Q ss_pred HHHhcCC-------------CCCCeEEEEccccchhhc-CCCcceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 175 IVASDAE-------------FEGRMKFLTRDIMEVKEQ-LGEYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 175 ~~~~~g~-------------l~~~i~f~~~D~~~~~~~-l~~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
+.|. .+.+|++.++|+.++... ...||.||-.+. +..+.+.+.++++.+.+.|+|||++++
T Consensus 78 ---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 78 ---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ---HcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2221 136899999999887543 357999996543 355788999999999999999986444
No 36
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.45 E-value=8.6e-13 Score=117.02 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=84.7
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
...+.++.+|||||||+ |..+..+|+...++++|+++|+++++++.|++.+++.| + ++++++++|+.+.......||
T Consensus 72 ~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 72 LLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred HhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcccCCCC
Confidence 34568899999999996 66667888743345689999999999999999999999 4 689999999976544445799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+|++.... ..+.+.+.+.|+|||++++--.
T Consensus 149 ~Ii~~~~~-------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 149 RIYVTAAG-------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred EEEEcCCc-------ccccHHHHHhcCcCcEEEEEEc
Confidence 99976532 2345668899999999888543
No 37
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=116.24 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=84.1
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
...+.++.+||+||||+ |+.+..+|+...++++|+++|+++++++.|++.++..| + .+++++++|+.+...+...||
T Consensus 71 ~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 71 LLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred HcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCcCCCcC
Confidence 34568899999999996 66677787743456899999999999999999999998 3 689999999876544446799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|++.+.+. ++.+.+.+.|||||++++--
T Consensus 148 ~I~~~~~~~-------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGP-------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcc-------cchHHHHHhhCCCcEEEEEE
Confidence 999765431 23456778899999988854
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.45 E-value=1.1e-12 Score=122.09 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=90.3
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
....++.+|||||||+ |.-++.+++ .+|+.+++++|. |++++.|++.+++.| +.+|++++.+|..+. ++.++|+
T Consensus 145 ~~~~~~~~vlDiG~G~-G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~--~~~~~D~ 218 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKE--SYPEADA 218 (306)
T ss_pred cCCCCCCEEEEeCCch-hHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCC--CCCCCCE
Confidence 3456779999999997 666777887 478999999998 799999999999999 789999999998653 3456899
Q ss_pred eehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++.... .++.+...++++++++.|+|||++++-+
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8876543 4555566789999999999999998875
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.44 E-value=2.1e-12 Score=112.07 Aligned_cols=119 Identities=22% Similarity=0.177 Sum_probs=100.6
Q ss_pred hhhhHHHHHHH--HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119 113 VKLSKLEYTIL--SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT 190 (286)
Q Consensus 113 ~~l~~~E~~~l--~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~ 190 (286)
.++++.|..++ .+..+.++++++|||||++.+| +-+|. ..|..+|++||.|+++++..+++++++|. ++++.+.
T Consensus 15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~ 90 (187)
T COG2242 15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWAL-AGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVE 90 (187)
T ss_pred CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEe
Confidence 45788888754 4445799999999999987666 44554 57999999999999999999999999994 8999999
Q ss_pred ccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 191 RDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 191 ~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
||+-+...++.+||.||+-.. ..-..+++.+..+|+|||+||+.-
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 999888777778999998754 355689999999999999999963
No 40
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=8.9e-13 Score=119.67 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=83.5
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
.+......++.+|||||||+ |..+..+++ ..|+++|+|+|+|+.+++.|++. +++|+++|+.++. ..+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~-~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGP-GNLTRYLAR-RWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCC
Confidence 34455567889999999997 555677777 36789999999999999999762 3789999997764 335
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.||+|+....+++ .+++.+++.++.+.|||||.+++.
T Consensus 89 ~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 89 DTDVVVSNAALQW-VPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CceEEEEehhhhh-CCCHHHHHHHHHHhCCCCcEEEEE
Confidence 8999997665433 246678999999999999999885
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=1.3e-12 Score=115.83 Aligned_cols=104 Identities=22% Similarity=0.385 Sum_probs=85.8
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
++||+||||. |..+..+++ .+++++|+|+|+|+++++.|++.+...| +.++++|+.+|..+.+.+ +.||+|+....
T Consensus 1 ~~vLDiGcG~-G~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGY-GSDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCCEeehHHH
Confidence 4899999997 556677777 4678999999999999999999999999 788999999998654332 47999986544
Q ss_pred ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.++ ..++..+++++.+.|+|||.+++.+
T Consensus 77 l~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHH-IKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHh-CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 322 2567899999999999999999875
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.43 E-value=7e-13 Score=116.83 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchh--hcCCCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVK--EQLGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~--~~l~~fD~ 205 (286)
.++.+|||||||+ |..+..+|+ ..++.+|+|+|+|+++++.|++.++..+ + .+++|+++|+ ..++ .+.+.||.
T Consensus 39 ~~~~~VLDiGcGt-G~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGK-GEFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCC-CHHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence 3678999999997 555667776 3688999999999999999999999888 4 6799999999 5554 23357999
Q ss_pred eehhhhccCCh--h-----HHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSK--E-----EKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~--~-----~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++.....+.. . ....+++++.+.|+|||.+++.+
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 98642211110 0 13579999999999999999875
No 43
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.42 E-value=2.7e-12 Score=112.59 Aligned_cols=106 Identities=18% Similarity=0.306 Sum_probs=83.0
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
...++.++||+||| -|..|++||+ .|..|+++|+|+.+++.+++++++.+ + .|+..+.|+.+...+ +.||+|
T Consensus 27 ~~~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 27 PLLKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp TTS-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEE
T ss_pred hhcCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhcccc-CCcCEE
Confidence 34578899999999 5899999999 89999999999999999999999988 3 499999998775543 579998
Q ss_pred ehhh-hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+... +...+.+...++++.+.+.++|||++++..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 7321 113356777889999999999999988754
No 44
>PRK04457 spermidine synthase; Provisional
Probab=99.42 E-value=8.3e-13 Score=121.08 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=101.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~ 207 (286)
.++++||+|||| .|..+..+++ ..|+++|+++|+||++++.|++.+...+ ..++++++++|+.+..... +.||+|+
T Consensus 65 ~~~~~vL~IG~G-~G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLG-GGSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCC-HhHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 567899999999 5777777877 4789999999999999999999977555 3579999999998765443 4799999
Q ss_pred hhhhcc--CChh-HHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEEecCcccceeeeEEEee
Q 042119 208 LAALVG--MSKE-EKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSAVHPNDDVINSVVLVRN 281 (286)
Q Consensus 208 ~aalvg--~~~~-~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~~~P~~~vinsvi~~r~ 281 (286)
+++.-+ ++.. ...++++.+.+.|+|||++++.-... .-.++.+ ...+ .-|.-...+-|..+-.|.++++.|
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~--~~~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR--DKRYDRY-LERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC--chhHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 886532 1111 12689999999999999999853211 1111110 0111 235422222244444588888876
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=2.7e-12 Score=111.19 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=84.8
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.....++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|++++++.+ + .+++++++|+.. .. .+.||
T Consensus 26 ~l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~-~~-~~~~D 99 (187)
T PRK08287 26 KLELHRAKHLIDVGAGT-GSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPI-EL-PGKAD 99 (187)
T ss_pred hcCCCCCCEEEEECCcC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchh-hc-CcCCC
Confidence 33456889999999996 677777777 3678999999999999999999999988 4 579999999742 11 24799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+..... ....++++.+.+.|+|||.+++..
T Consensus 100 ~v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 100 AIFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 99976433 234568999999999999998853
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=2.1e-12 Score=119.04 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=93.7
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
.+.+.++.+|++|||||||- |.+++.+|++ .|++|+|+++|++..+.|++.+++.| ++++++++..|-.++..
T Consensus 64 ~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~e--- 136 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGW-GGLAIYAAEE--YGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFEE--- 136 (283)
T ss_pred HHHhcCCCCCCEEEEeCCCh-hHHHHHHHHH--cCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccccccc---
Confidence 34566789999999999995 7778999984 59999999999999999999999999 88899999999866553
Q ss_pred Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.||-|.-.... .+..+....+++.+.+.|+|||++++.+
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 49987633222 2234678899999999999999999986
No 47
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.1e-12 Score=116.65 Aligned_cols=152 Identities=21% Similarity=0.330 Sum_probs=115.7
Q ss_pred HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119 124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY 203 (286)
Q Consensus 124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f 203 (286)
.+.++.+++||++.|.|.+- -+..||....+.++|+.+|+.++..+.|+++++.+| +.+++++..+|+.+...+. .|
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~-lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGA-LTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred HHcCCCCCCEEEEcccCchH-HHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccccc-cc
Confidence 35678999999999999754 456677656778999999999999999999999999 7888999999998866554 89
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec---------CcceeeecccCCcccc--cCcEEE-EEecCccc
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA---------KGARAFLYPVVVEHDL--LDFEVL-SAVHPNDD 271 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~---------~g~r~~lyp~v~~~~l--~gf~~~-~~~~P~~~ 271 (286)
|+||++- ++..++++++.+.|+|||.+++=.+ ..++..-|-..+..++ +.|++. ..++|...
T Consensus 165 Dav~LDm------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~ 238 (256)
T COG2519 165 DAVFLDL------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEATRPETR 238 (256)
T ss_pred CEEEEcC------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccccCcccc
Confidence 9999883 5778999999999999999998652 2333321111122222 567765 66788865
Q ss_pred -ceee--eEEEeecCC
Q 042119 272 -VINS--VVLVRNSQG 284 (286)
Q Consensus 272 -vins--vi~~r~~~~ 284 (286)
+-.| ++++||..+
T Consensus 239 ~v~HTgyivf~R~~~~ 254 (256)
T COG2519 239 MVGHTGYIVFARKLGG 254 (256)
T ss_pred cccceeEEEEEeeccC
Confidence 4445 778888543
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=1.8e-12 Score=127.63 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=88.4
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
+....+.++.+|||||||+ |..++.+|+. .+++|+|+|+|+++++.|++... + ...+++|+++|+.+.+.+.+.
T Consensus 259 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~--~-~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 259 VDKLDLKPGQKVLDVGCGI-GGGDFYMAEN--FDVHVVGIDLSVNMISFALERAI--G-RKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHhcCCCCCCEEEEEeccC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhh--c-CCCceEEEEcCcccCCCCCCC
Confidence 3344457788999999997 5566888873 48999999999999999998765 4 346899999999876554457
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
||+|+....+. +.+++.+++.++++.|+|||.+++.+
T Consensus 333 fD~I~s~~~l~-h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 333 FDVIYSRDTIL-HIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EEEEEECCccc-ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 99998654432 23577899999999999999999875
No 49
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=6.4e-12 Score=109.75 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=89.5
Q ss_pred hhHHHHHH--HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 115 LSKLEYTI--LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 115 l~~~E~~~--l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
+++.|... +....+.++.+|||+|||+ |..++.+|+ ..++++|+++|+|+++++.|++.+++.| + .+++++++|
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~-G~~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d 98 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGT-GTIPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGS 98 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECc
Confidence 55555553 2333456789999999997 455666776 3678999999999999999999999998 4 579999999
Q ss_pred ccchhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 193 IMEVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 193 ~~~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+....+ ..+|.+++... .+..++++.+.+.|+|||.+++-.
T Consensus 99 ~~~~~~~~~~~~d~v~~~~~-----~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 99 APECLAQLAPAPDRVCIEGG-----RPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred hHHHHhhCCCCCCEEEEECC-----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 86643333 35788776532 344679999999999999998875
No 50
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.39 E-value=5.3e-13 Score=120.85 Aligned_cols=102 Identities=21% Similarity=0.355 Sum_probs=84.4
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEccccchhhcCCCccee
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG----RMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~i~f~~~D~~~~~~~l~~fD~V 206 (286)
+++||||||| +|+-++-||+ .|++|+|||.++++++.|++.....+.++. +++|.+.|+.+.. +.||.|
T Consensus 90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 4889999999 6999999999 899999999999999999999666663444 4889999986543 359999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...-.+ .+-.++.++++.+.+++||||.+.+.+
T Consensus 163 vcsevl-eHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVL-EHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHH-HHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 855333 234688999999999999999999976
No 51
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=1.8e-12 Score=102.99 Aligned_cols=106 Identities=20% Similarity=0.314 Sum_probs=83.5
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcceeeh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDCIFL 208 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~V~~ 208 (286)
|.+|||+|||. |..++.+++. . ..+++++|+||.+++.|++.+...+ +.++++++++|..+... ....||+|+.
T Consensus 1 g~~vlD~~~G~-G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGS-GTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTT-CHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcch-HHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence 56999999995 7777777773 3 6999999999999999999999999 78899999999988773 3357999987
Q ss_pred hhhccC---C----hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGM---S----KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~---~----~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.---+. . ......+++++.+.|+|||.+++-.
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 642211 0 1134688999999999999998753
No 52
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=3.7e-12 Score=114.98 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=92.7
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCC------cEEEEEeCChHHHHHHHHHHHhcCCCCCC--eEEEEccccch
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS------THFDNFDIDEAANDVARSIVASDAEFEGR--MKFLTRDIMEV 196 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g------~~V~~iDid~~ai~~Ar~~~~~~g~l~~~--i~f~~~D~~~~ 196 (286)
+.++.++.++||++||+ |..|..+-+. .+. .+|+..||+|++++.+++...+.+ +.++ +.|+++|+.++
T Consensus 95 ~L~p~~~m~~lDvaGGT-GDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGT-GDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDL 171 (296)
T ss_pred ccCCCCCCeEEEecCCc-chhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccC
Confidence 44678889999999996 7888888773 444 899999999999999999998877 5555 99999999999
Q ss_pred hhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 197 KEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 197 ~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+++...||..-++.-+ -+ .+..+++++.+|+|||||++.+-.
T Consensus 172 pFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCCcceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998899998776655 22 355679999999999999988653
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=7.1e-12 Score=126.58 Aligned_cols=107 Identities=15% Similarity=0.246 Sum_probs=86.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD~V 206 (286)
.++.+|||||||+ |..+..+|+ ..++.+|+|+|+|+.|++.|++.....+ .+++++++|+.+++ .+.+.||+|
T Consensus 417 ~~g~rVLDIGCGT-G~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 417 IKGDTIVDVGAGG-GVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred cCCCEEEEeCCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEE
Confidence 4688999999997 566677776 4789999999999999999999876555 47899999998765 334579999
Q ss_pred ehhhhcc------------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVG------------MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg------------~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.....+ ++.++..++++++.+.|||||.+++.+
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 8654321 123567899999999999999999976
No 54
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=7.6e-12 Score=112.40 Aligned_cols=137 Identities=8% Similarity=0.043 Sum_probs=102.9
Q ss_pred HHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH
Q 042119 89 FATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA 168 (286)
Q Consensus 89 ~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a 168 (286)
|-++-.+++.+|+.-...|++..|. . +....++.|||+.||| -|..+++||+ .|.+|+|+|+|+.|
T Consensus 12 W~~rw~~~~~~f~~~~pnp~L~~~~-------~---~l~~~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~A 77 (226)
T PRK13256 12 WLDRWQNDDVGFCQESPNEFLVKHF-------S---KLNINDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEKA 77 (226)
T ss_pred HHHHHhcCCCCCccCCCCHHHHHHH-------H---hcCCCCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHHH
Confidence 3333444577888777778754442 1 1123457899999999 5999999998 89999999999999
Q ss_pred HHHHHHHH-------H----hcCCCCCCeEEEEccccchhh---cCCCcceeehh-hhccCChhHHHHHHHHHHhhccCC
Q 042119 169 NDVARSIV-------A----SDAEFEGRMKFLTRDIMEVKE---QLGEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDG 233 (286)
Q Consensus 169 i~~Ar~~~-------~----~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pg 233 (286)
++.+.+-. + +.- -+.+|++.++|..+++. ..+.||.||.. +++..+.+.+.+..+++.+.|+||
T Consensus 78 i~~~~~e~~~~~~~~~~~~~~~~-~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 78 VLSFFSQNTINYEVIHGNDYKLY-KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred HHHHHHHcCCCcceeccccccee-ccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 99986621 0 000 12589999999988753 23579999964 456778899999999999999999
Q ss_pred cEEEEee
Q 042119 234 GILLVRS 240 (286)
Q Consensus 234 g~lv~r~ 240 (286)
|.+++-+
T Consensus 157 g~llll~ 163 (226)
T PRK13256 157 TQILLLV 163 (226)
T ss_pred cEEEEEE
Confidence 9877754
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=1.8e-12 Score=114.60 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch
Q 042119 117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV 196 (286)
Q Consensus 117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~ 196 (286)
+.-.+++.+.....+.+|.|+|||| |-++..|++ ..|+++|+|||-|++|++.|++. + .+.+|..+|+.+.
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGp-GnsTelL~~-RwP~A~i~GiDsS~~Mla~Aa~r---l----p~~~f~~aDl~~w 87 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGP-GNSTELLAR-RWPDAVITGIDSSPAMLAKAAQR---L----PDATFEEADLRTW 87 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCC-CHHHHHHHH-hCCCCeEeeccCCHHHHHHHHHh---C----CCCceecccHhhc
Confidence 3345677777889999999999998 566677777 48999999999999999999775 3 3689999999876
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
..+ ..+|++|..+...|- ++-.++|.++...|+|||+|.+.
T Consensus 88 ~p~-~~~dllfaNAvlqWl-pdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 88 KPE-QPTDLLFANAVLQWL-PDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CCC-Cccchhhhhhhhhhc-cccHHHHHHHHHhhCCCceEEEE
Confidence 543 479999977655553 45557999999999999999994
No 56
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=5.3e-12 Score=114.37 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=84.0
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
+......++.+|||||||+ |..+..+++ ..++++|+|+|+|+++++.|++.. .+++|+.+|+.+... ...
T Consensus 24 l~~~~~~~~~~vLDiGcG~-G~~~~~la~-~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~~-~~~ 93 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGP-GNSTELLVE-RWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQP-PQA 93 (258)
T ss_pred HhhCCCcCCCEEEEEcccC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccCC-CCC
Confidence 3344557789999999997 555677777 368899999999999999999862 358999999876543 348
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
||+|+......+ ..++.++++++.+.|+|||.+++..
T Consensus 94 fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 94 LDLIFANASLQW-LPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccEEEEccChhh-CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999987655433 2466789999999999999998854
No 57
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.36 E-value=5.3e-12 Score=114.04 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++.+|||+|||++ ..+..+++ .+.+|+++|+|+++++.|++... ...|+++|+.+++...+.||+|+.
T Consensus 41 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 41 RKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred cCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 46789999999985 45566776 68999999999999999988621 357899999887665567999996
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...+.+. .+...++.++.+.|+|||.+++..
T Consensus 110 ~~~l~~~-~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWC-GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred Cchhhhc-CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 5444332 456689999999999999999875
No 58
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.36 E-value=1.1e-11 Score=108.57 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=83.3
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
..++.+||++|||++ ..+..+++. .+. .+++++|+++++++.+++... . ..+++++++|+.+.+...+.||+|
T Consensus 37 ~~~~~~vldiG~G~G-~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~-~---~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 37 VFKGQKVLDVACGTG-DLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE-L---PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred cCCCCeEEEeCCCCC-hhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc-c---CCCceEEecchhcCCCCCCcEEEE
Confidence 357899999999974 555666663 443 699999999999999999865 2 368999999998876554579999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+...... +..+...+++.+.+.|+|||.+++.+
T Consensus 111 ~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLR-NVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeC-CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8654332 33566789999999999999998864
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.35 E-value=6.5e-12 Score=109.84 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=85.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~ 205 (286)
..+.+|||||||+ |..+..+|+ ..|+++|+|+|+++++++.|++.+...| + .+++++++|+.+++.. .+.+|.
T Consensus 15 ~~~~~ilDiGcG~-G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGK-GRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCc-cHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence 3567999999996 666777887 4789999999999999999999999988 4 5899999999876532 236999
Q ss_pred eehhhhccCChhH-------HHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEE-------KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++..-..++... ..++++.+++.|||||.+.+.+
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 8865322222111 1469999999999999999876
No 60
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.34 E-value=2.6e-11 Score=107.52 Aligned_cols=104 Identities=24% Similarity=0.372 Sum_probs=84.3
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..++.+|||||||+ |..+..+++ .+.+|+|+|+|+++++.|++.+...+ ..++++|.++|+.+.+ +.||+|+
T Consensus 53 ~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEE
Confidence 35689999999996 666677777 57899999999999999999988777 5568999999987654 6899998
Q ss_pred hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
....+ .++.++...++.++.+.+++|+++.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65444 445566778999999999888777664
No 61
>PRK08317 hypothetical protein; Provisional
Probab=99.34 E-value=1.5e-11 Score=108.37 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=87.5
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.....++.+||++|||+ |..+..+++...++++++++|+++.+++.|++..... ..+++|.++|+.+.+...+.||
T Consensus 14 ~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCce
Confidence 34567889999999997 5666777773336789999999999999999983332 3689999999977665556899
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+...... +..+...+++++.+.|+|||.+++..
T Consensus 90 ~v~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 90 AVRSDRVLQ-HLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEEechhh-ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 998764432 23467789999999999999998865
No 62
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.34 E-value=4.6e-13 Score=103.85 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=62.1
Q ss_pred EEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhhhc
Q 042119 135 AFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALV 212 (286)
Q Consensus 135 L~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalv 212 (286)
||||||++-++...+++ +++.+++++|+|+.+++.|++.+...+. ...+....+..+..... +.||+|+....+
T Consensus 1 LdiGcG~G~~~~~l~~~--~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE--LPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH--C-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999986665555544 6999999999999999999999988773 44555555554443322 389999976554
Q ss_pred cCChhHHHHHHHHHHhhccCCcEE
Q 042119 213 GMSKEEKLTILGHIRKYMKDGGIL 236 (286)
Q Consensus 213 g~~~~~k~~vl~~l~~~l~pgg~l 236 (286)
++- +++..+++++.+.|+|||.|
T Consensus 77 ~~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh-hhHHHHHHHHHHHcCCCCCC
Confidence 433 78889999999999999986
No 63
>PRK04266 fibrillarin; Provisional
Probab=99.33 E-value=3.3e-11 Score=108.31 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=96.6
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hc-CC
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQ-LG 201 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~-l~ 201 (286)
...+.++.+|||+|||+ |..+..+|+. .++.+|+++|++++|++..++.+++. .++.++.+|+.+.. .+ .+
T Consensus 67 ~l~i~~g~~VlD~G~G~-G~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAAS-GTTVSHVSDI-VEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hCCCCCCCEEEEEccCC-CHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhccc
Confidence 35678999999999997 4556777773 44679999999999999888776643 46899999986521 11 24
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC-cc--e---eeecccCCcccc--cCcEEEEEecCcccc-
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK-GA--R---AFLYPVVVEHDL--LDFEVLSAVHPNDDV- 272 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~-g~--r---~~lyp~v~~~~l--~gf~~~~~~~P~~~v- 272 (286)
.||+||...- +..+...+++++.+.|||||.+++.-.+ .. + ...|... ...+ .||+...+....+-.
T Consensus 141 ~~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~-~~~l~~aGF~~i~~~~l~p~~~ 216 (226)
T PRK04266 141 KVDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEE-IRKLEEGGFEILEVVDLEPYHK 216 (226)
T ss_pred cCCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHH-HHHHHHcCCeEEEEEcCCCCcC
Confidence 6999984321 1223345789999999999999984211 00 0 0111100 1122 499998777654332
Q ss_pred eeeeEEEeec
Q 042119 273 INSVVLVRNS 282 (286)
Q Consensus 273 insvi~~r~~ 282 (286)
.+-.+++|++
T Consensus 217 ~h~~~v~~~~ 226 (226)
T PRK04266 217 DHAAVVARKK 226 (226)
T ss_pred CeEEEEEEcC
Confidence 3346666653
No 64
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.8e-11 Score=108.17 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.+|||||||++ ..+..+++ ..+..+|+++|+++++++.+++.. + ++++++++|+.+.+...+.||+|+.
T Consensus 33 ~~~~~vLDlG~G~G-~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~---~---~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCGTG-YLTRALLK-RFPQAEFIALDISAGMLAQAKTKL---S---ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCCcc-HHHHHHHH-hCCCCcEEEEeChHHHHHHHHHhc---C---CCCeEEecchhhCCCCCCceeEEEE
Confidence 45689999999975 45566776 467889999999999999998863 2 4789999999887655567999997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.....+ ..+..+++.++.+.|+|||.+++..
T Consensus 105 ~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQW-CDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 654433 2466789999999999999999875
No 65
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.32 E-value=1.2e-11 Score=105.91 Aligned_cols=105 Identities=22% Similarity=0.362 Sum_probs=82.1
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
++.+|||+|||. |.-++.+++ ..+..+|+++|+++.|++.|++.++..+ +.+ ++++.+|..+... ...||+|+..
T Consensus 31 ~~~~vLDlG~G~-G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGS-GVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTT-SHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE-
T ss_pred cCCeEEEecCCh-HHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEEc
Confidence 678999999997 566677777 5788889999999999999999999999 555 9999999866433 3589999865
Q ss_pred hhc--cC--ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 210 ALV--GM--SKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 210 alv--g~--~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
--. +. ......+++++..++|+|||.+.+-
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 322 21 1124578999999999999988543
No 66
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.32 E-value=4.3e-11 Score=111.66 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=85.5
Q ss_pred hHHHHHHHHhcC------CCCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE
Q 042119 116 SKLEYTILSENG------VVQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKF 188 (286)
Q Consensus 116 ~~~E~~~l~~~~------~~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f 188 (286)
.+.|.+.+..+. +.++.+|+++|||++-.|...+.+ ++ +.+|+++|+|++|++.|++.+.... -..+|.+
T Consensus 43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~--l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~ 119 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDA--LRQPARYVPIDISADALKESAAALAADY-PQLEVHG 119 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHh--hccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEE
Confidence 566655544432 356789999999986555544443 34 7999999999999999999876543 2356889
Q ss_pred EEccccchhhcCCCc----c-eeehhhhcc-CChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 189 LTRDIMEVKEQLGEY----D-CIFLAALVG-MSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 189 ~~~D~~~~~~~l~~f----D-~V~~aalvg-~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+++|..+.......+ + ++|..+.++ ++.++..++|+++++.|+|||.+++.
T Consensus 120 i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 120 ICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 999987632222223 2 344444443 46677889999999999999999874
No 67
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.31 E-value=2.9e-11 Score=109.81 Aligned_cols=111 Identities=25% Similarity=0.307 Sum_probs=82.4
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
....+.-...+.+. ..++++|||||||+ |..++.+++ ....+|+++|+|+.+++.|+++++..+ +.+++.+..+|
T Consensus 103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~ 177 (250)
T PRK00517 103 HPTTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGD 177 (250)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCC
Confidence 34444444444332 46789999999997 777787776 223359999999999999999999888 66666665444
Q ss_pred ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
. .||+|+.... .+....++.++.+.|+|||.+++..
T Consensus 178 ~--------~fD~Vvani~----~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 178 L--------KADVIVANIL----ANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred C--------CcCEEEEcCc----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 6999985432 2455678999999999999999864
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.30 E-value=4.4e-11 Score=110.97 Aligned_cols=103 Identities=24% Similarity=0.286 Sum_probs=82.8
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..++++|||||||+ |..++.+++ ....+|+++|+|+.+++.|++++...+ +..++.+..+|.... ..+.||+|+
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~~--~~~~fDlVv 230 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQP--IEGKADVIV 230 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccccc--cCCCceEEE
Confidence 35779999999997 677777777 344589999999999999999999988 778888888874332 224799998
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...+. ....+++.++.+.|+|||.+++..
T Consensus 231 an~~~----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 231 ANILA----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred EecCH----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 65432 455679999999999999999865
No 69
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=2.3e-11 Score=111.64 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=80.2
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCC---CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLT---STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~---g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
+.....+.+|||||||+ |..+..+++. .+ +.+|+|+|+|+++++.|++. . .+++|.++|+.+++...+
T Consensus 80 ~~l~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~~~~v~giD~s~~~l~~A~~~---~----~~~~~~~~d~~~lp~~~~ 150 (272)
T PRK11088 80 ERLDEKATALLDIGCGE-GYYTHALADA-LPEITTMQLFGLDISKVAIKYAAKR---Y----PQVTFCVASSHRLPFADQ 150 (272)
T ss_pred HhcCCCCCeEEEECCcC-CHHHHHHHHh-cccccCCeEEEECCCHHHHHHHHHh---C----CCCeEEEeecccCCCcCC
Confidence 33345668999999997 5555666653 33 35899999999999999874 2 358999999988877667
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec-----Ccceeeecc
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA-----KGARAFLYP 250 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-----~g~r~~lyp 250 (286)
.||+|+.. +. + ..++++.|.|||||.+++... ..++..+|.
T Consensus 151 sfD~I~~~-~~----~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~ 196 (272)
T PRK11088 151 SLDAIIRI-YA----P---CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYD 196 (272)
T ss_pred ceeEEEEe-cC----C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcc
Confidence 89999842 21 1 245789999999999998763 235556665
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.28 E-value=7.1e-11 Score=109.50 Aligned_cols=109 Identities=20% Similarity=0.266 Sum_probs=84.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++.+|||+|||+ |.-++.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.. ....||+|+.
T Consensus 120 ~~~~~vLDlG~Gs-G~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGS-GCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCch-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence 4568999999997 666778887 4688999999999999999999999999 6789999999986532 2236999985
Q ss_pred hh----------h------------ccC--ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AA----------L------------VGM--SKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aa----------l------------vg~--~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.- + .|. ..+...+++..+.++|+|||.+++..+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 31 0 000 012346789999999999999998754
No 71
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.28 E-value=3.8e-11 Score=106.01 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=80.8
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
..+.++.+||+||||+ |..+..+++ ...+|+++|+++++++.|++.+++.| + .++++.++|..+.....+.||+
T Consensus 74 l~~~~~~~VLeiG~Gs-G~~t~~la~---~~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 74 LELKPGDRVLEIGTGS-GYQAAVLAH---LVRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred cCCCCCCEEEEECCCc-cHHHHHHHH---HhCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCcCCCcCE
Confidence 3457889999999997 555667887 23589999999999999999999998 4 4699999998653333457999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
|++.+.. ..+.+.+.+.|+|||++++--.
T Consensus 148 I~~~~~~-------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAA-------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence 9987543 1345678899999999988654
No 72
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=9.4e-11 Score=103.87 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=81.5
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
+..++.+|||||||+ |..+..+++ .+.+|+++|+|+.+++.|++.....+ ..++++|.++|.. ...+.||+|
T Consensus 60 ~~~~~~~vLDvGcG~-G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~---~~~~~fD~v 131 (230)
T PRK07580 60 GDLTGLRILDAGCGV-GSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLE---SLLGRFDTV 131 (230)
T ss_pred CCCCCCEEEEEeCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCch---hccCCcCEE
Confidence 346778999999997 556677887 46789999999999999999998888 5678999999942 233679999
Q ss_pred ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+....+ .++.+....++..+.+.+++|+++.+.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~ 165 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFA 165 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEEC
Confidence 865443 445566678899999887666655543
No 73
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.27 E-value=2.5e-11 Score=111.40 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=85.4
Q ss_pred CCCCEEEEeccCCChh---hHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHH------hc------------C--
Q 042119 129 VQPKKVAFVGSGPMPL---TSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVA------SD------------A-- 180 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~---tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~------~~------------g-- 180 (286)
.++.+|+++|||++-. -|+.+++ ..+ +.+|+|+|+|++|++.|++.+- .. +
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e-~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAE-TLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHH-HhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 4568999999997421 2445555 232 5799999999999999998531 00 0
Q ss_pred -----CCCCCeEEEEccccchhhcCCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119 181 -----EFEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA 244 (286)
Q Consensus 181 -----~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~ 244 (286)
.+.++|+|.++|+.+.+...+.||+|+... ++..+.+.+.++++++++.|+|||.+++-....+
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 022579999999988665556899999643 3455778888999999999999999999765443
No 74
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=7.1e-11 Score=111.40 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=82.9
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
...++++.+||+||||+ |..++.+|+.....++|+++|+++++++.|++.+++.| . +++.++++|+.+...+.+.||
T Consensus 75 ~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred hcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCcc
Confidence 34567889999999996 67777788732223589999999999999999999999 4 689999999877655556799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++..+. .+...+.+.|+|||++++-.
T Consensus 152 ~Ii~~~g~~-------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGVD-------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCchH-------HhHHHHHHhcCCCCEEEEEe
Confidence 999875431 23345778999999988854
No 75
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=2.8e-11 Score=107.86 Aligned_cols=107 Identities=16% Similarity=0.309 Sum_probs=96.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE 202 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~ 202 (286)
-.++++++||.= .|+|++.+|.+...+++|+++|+|+++.+++.++++..| +.++|+|+++++.+....+ +.
T Consensus 72 ~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence 468999999997 599999999977789999999999999999999999999 8999999999998755432 46
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
||+||+++.. .++...++++.+.+|+||+|++.+.
T Consensus 150 fDfaFvDadK----~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 150 FDFAFVDADK----DNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred eeEEEEccch----HHHHHHHHHHHhhcccccEEEEecc
Confidence 9999999865 7888999999999999999999983
No 76
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=6.1e-11 Score=114.33 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=82.1
Q ss_pred HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119 124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY 203 (286)
Q Consensus 124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f 203 (286)
.+.++.++.+|||||||.+ ..++.+|++ .|++|+|+|+|+++++.|++.++ + + .+++..+|..++ .+.|
T Consensus 161 ~~l~l~~g~rVLDIGcG~G-~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~--~-l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWG-GLARYAAEH--YGVSVVGVTISAEQQKLAQERCA--G-L--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHhCCCCCCEEEEeCCCcc-HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhc--c-C--eEEEEECchhhc---CCCC
Confidence 4456688999999999975 455777773 58999999999999999999874 4 2 488999998654 2579
Q ss_pred ceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|.|+..... .....+...+++++.+.|||||.+++..
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 998743322 2233556789999999999999999864
No 77
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=5.3e-11 Score=112.21 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=83.4
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
...+++|||||||. |.-++.+++. ...+|+|+|+|+.++..++...+..+ ...+++|+.+|+.+++. .+.||+|+
T Consensus 120 ~l~g~~VLDIGCG~-G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 120 PLKGRTVLDVGCGN-GYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 45789999999996 7777888872 23469999999999987766555554 34689999999988776 56799999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
....+. +..+...+++++++.|+|||.+++.+
T Consensus 195 s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLY-HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 654432 23566789999999999999998864
No 78
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.26 E-value=2.9e-11 Score=107.49 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=83.0
Q ss_pred HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119 120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ 199 (286)
Q Consensus 120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~ 199 (286)
...+....++++.+||+||||+ |+.+..+|+...+...|++||++++.++.|++.++++|. .+|+++++|...-..+
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTGG
T ss_pred HHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhcccc
Confidence 3344444679999999999995 888888888444567899999999999999999999994 5899999998764444
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
...||.|++.+.+. + +=..+.+.|++||++++--.
T Consensus 139 ~apfD~I~v~~a~~---~----ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 139 EAPFDRIIVTAAVP---E----IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp G-SEEEEEESSBBS---S------HHHHHTEEEEEEEEEEES
T ss_pred CCCcCEEEEeeccc---h----HHHHHHHhcCCCcEEEEEEc
Confidence 46899999876652 2 22346777899999998543
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.26 E-value=5.8e-11 Score=104.01 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..-.+++++|||. |.-+..||. ..-+++++|+++.|++.||+.++.. .+|+|+++|+.+.. +.+.||+|++
T Consensus 42 ~ry~~alEvGCs~-G~lT~~LA~---rCd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~ 112 (201)
T PF05401_consen 42 RRYRRALEVGCSI-GVLTERLAP---RCDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVL 112 (201)
T ss_dssp SSEEEEEEE--TT-SHHHHHHGG---GEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred cccceeEecCCCc-cHHHHHHHH---hhCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEE
Confidence 4558999999996 555556777 3478999999999999999997643 47999999996643 3368999987
Q ss_pred hhhc-cC-ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALV-GM-SKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+... -+ +.++...+++.+.+.|+|||.+|+-+.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7543 22 346778899999999999999999653
No 80
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=3.2e-11 Score=114.41 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++.... .+++++++|+.+.+...+.||+|+.
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence 4678999999997 555667776 35778999999999999999987431 4689999999887665567999987
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...+.. ..++.++++++.+.|+|||.+++..
T Consensus 185 ~~~L~~-~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 AGSIEY-WPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred cChhhh-CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 544322 2466789999999999999998754
No 81
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.24 E-value=8.6e-11 Score=107.71 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=86.1
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
.+.++.+|||+||||++.|.. +|+....++.|+++|+++.+++.+++++++.| + .+++++++|+.+.....+.||.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~-la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQ-ISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHH-HHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEE
Confidence 457889999999999877755 45423345799999999999999999999999 4 57999999997765555579999
Q ss_pred ehhhh---cc-----------CCh-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAAL---VG-----------MSK-------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aal---vg-----------~~~-------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++++- .| +.. ....++|++..+.+||||+|++.+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 98641 11 011 112469999999999999999875
No 82
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.24 E-value=5e-11 Score=106.62 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=95.5
Q ss_pred cCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 042119 94 TKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVAR 173 (286)
Q Consensus 94 ~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar 173 (286)
.++..||+.-...|.+..|..- ....++.|||+.||| -|..+++||+ .|.+|+|+|+|+.|++.+.
T Consensus 11 ~~~~~~w~~~~~~p~L~~~~~~----------l~~~~~~rvLvPgCG-~g~D~~~La~---~G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 11 QEGQTPWDQGEPNPALVEYLDS----------LALKPGGRVLVPGCG-KGYDMLWLAE---QGHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp HTT--TT--TTSTHHHHHHHHH----------HTTSTSEEEEETTTT-TSCHHHHHHH---TTEEEEEEES-HHHHHHHH
T ss_pred hcCCCCCCCCCCCHHHHHHHHh----------cCCCCCCeEEEeCCC-ChHHHHHHHH---CCCeEEEEecCHHHHHHHH
Confidence 3356789887888876655332 134677899999999 5899999999 7999999999999999985
Q ss_pred HHHHh------cCC----CCCCeEEEEccccchhhcC-CCcceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 174 SIVAS------DAE----FEGRMKFLTRDIMEVKEQL-GEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 174 ~~~~~------~g~----l~~~i~f~~~D~~~~~~~l-~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.-.. .+. -..+|++.+||..++.... +.||+||-. +++.++++.+.+..+++.+.|+|||.+++-
T Consensus 77 ~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 77 EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred HHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 43221 010 1347899999998876654 479999965 455778899999999999999999994443
No 83
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.24 E-value=8.7e-11 Score=110.43 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=81.8
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.+..++++|||||||+ |+-++.++. .| ..|+|||+|+.++..++..-+..+ ...++.+..+|+.+++.. ..||
T Consensus 117 l~~~~g~~VLDvGCG~-G~~~~~~~~---~g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 117 LSPLKGRTILDVGCGS-GYHMWRMLG---HGAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred cCCCCCCEEEEeccCC-cHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCC-CCcC
Confidence 3567789999999996 666667766 34 379999999999987655434334 246899999998887653 4799
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+||....+. +..+...+|.++++.|+|||.+++.+
T Consensus 191 ~V~s~gvL~-H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLY-HRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhh-ccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999665432 23566789999999999999999864
No 84
>PRK00811 spermidine synthase; Provisional
Probab=99.23 E-value=1.1e-10 Score=108.05 Aligned_cols=111 Identities=21% Similarity=0.325 Sum_probs=83.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C--CCCeEEEEccccchhhcC-CCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F--EGRMKFLTRDIMEVKEQL-GEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l--~~~i~f~~~D~~~~~~~l-~~fD 204 (286)
..+++||+||||. |.++..+++ +....+|++||+|+++++.|++.+...+. . ..|++++.+|+.+..... +.||
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 5689999999995 666676766 33457999999999999999998865320 1 468999999998765432 4799
Q ss_pred eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEeec
Q 042119 205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+|+.++.-...... ..++++.+.+.|+|||++++...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99987532111111 25789999999999999998643
No 85
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.22 E-value=1.1e-10 Score=103.33 Aligned_cols=99 Identities=10% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++.+||+||||+ |..+..+++ ..++.+++|||+|+++++.|++.. .++++.++|+.+ +...+.||+|+.
T Consensus 42 ~~~~~VLDiGCG~-G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~ 111 (204)
T TIGR03587 42 PKIASILELGANI-GMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLT 111 (204)
T ss_pred CCCCcEEEEecCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEE
Confidence 5778999999996 677777777 357899999999999999998852 247888999877 555568999996
Q ss_pred hhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
...+ +++.+...++++++.+.+ ++.+++-
T Consensus 112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 112 KGVLIHINPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred CChhhhCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 5543 556667889999999987 3455553
No 86
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.3e-10 Score=108.82 Aligned_cols=108 Identities=20% Similarity=0.292 Sum_probs=84.1
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
+.+|||+|||+ |.-++.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+... .+.||+|+..-
T Consensus 134 ~~~VLDlG~Gs-G~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGS-GCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechh-hHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence 37999999996 666777887 4688999999999999999999999999 67789999999865332 24699998531
Q ss_pred ----------------------hccC--ChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 211 ----------------------LVGM--SKEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 211 ----------------------lvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
+.|. ..+...+++..+.+.|+|||.+++...+
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0000 0123467899999999999999996543
No 87
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-10 Score=102.40 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=93.6
Q ss_pred cchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 042119 110 GNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL 189 (286)
Q Consensus 110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~ 189 (286)
..|..--.+....+....++++++||+||||. |+.+..||+ ...+|+.||++++-.+.|+++++.+| + .+|.+.
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~---l~~~V~siEr~~~L~~~A~~~L~~lg-~-~nV~v~ 125 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLAR---LVGRVVSIERIEELAEQARRNLETLG-Y-ENVTVR 125 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHH---HhCeEEEEEEcHHHHHHHHHHHHHcC-C-CceEEE
Confidence 34444444444455555779999999999995 899999999 44599999999999999999999999 4 459999
Q ss_pred EccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeee
Q 042119 190 TRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFL 248 (286)
Q Consensus 190 ~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~l 248 (286)
++|...=-.....||.|++.+.+. +... .+.+.|+|||++++=-+.+..+.+
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaaa~---~vP~----~Ll~QL~~gGrlv~PvG~~~~q~l 177 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAAAP---EVPE----ALLDQLKPGGRLVIPVGSGPAQRL 177 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeeccC---CCCH----HHHHhcccCCEEEEEEccCCcEEE
Confidence 999965333445799999877652 1222 356677999999986654434433
No 88
>PLN02366 spermidine synthase
Probab=99.21 E-value=1.4e-10 Score=108.69 Aligned_cols=110 Identities=21% Similarity=0.327 Sum_probs=84.5
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcC--CCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQL--GEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l--~~fD 204 (286)
..+++||+||||. |.++..+++ +.+..+|+.+|+|++.++.|++.+... +.-..|++++++|+.+..... +.||
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 5689999999996 667778887 333479999999999999999987653 211369999999997765443 3699
Q ss_pred eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|++++.-...... ..++++.+.+.|+|||+++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99988653221111 3579999999999999998754
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.21 E-value=1.6e-10 Score=111.18 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=87.6
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcce
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDC 205 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~ 205 (286)
...+..+||||||. |.-++.+|+ ..|+..|+|+|+++.+++.|.+.+...| + .++.++.+|+..+.. +.+.+|.
T Consensus 120 ~~~~p~vLEIGcGs-G~~ll~lA~-~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 120 KNQEKILIEIGFGS-GRHLLYQAK-NNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCCCeEEEEcCcc-cHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCceeE
Confidence 34567999999996 666778887 4789999999999999999999999999 4 579999999976533 2357999
Q ss_pred eehhhhccCChhHH-----HHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEK-----LTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k-----~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++..-..|+...- ..+++.+++.|+|||.+.+++
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99764344433211 479999999999999999986
No 90
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.20 E-value=1.4e-10 Score=96.24 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..++++|||||||. |..+..+++ .|.+|+|+|+++.+++. . .+.+...+..+.....+.||+|+
T Consensus 20 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~~~g~D~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 20 LKPGKRVLDIGCGT-GSFLRALAK---RGFEVTGVDISPQMIEK--------R----NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTTSEEEEESSTT-SHHHHHHHH---TTSEEEEEESSHHHHHH--------T----TSEEEEEECHTHHCHSSSEEEEE
T ss_pred cCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEECCHHHHhh--------h----hhhhhhhhhhhhhccccchhhHh
Confidence 47889999999996 556667777 57799999999999988 1 34455454444444556899999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
....+.+ .++...+++++.+.|||||.+++....
T Consensus 84 ~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 84 CNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 7655432 247889999999999999999998743
No 91
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.20 E-value=1.9e-10 Score=98.90 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=78.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++++||++|||+ |.-++.+++ .+.+|+++|+|+++++.|+++++..+ . +++++++|+.+.. .+.||+|+.
T Consensus 18 ~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAGT-GLVAIRLKG---KGKCILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCCh-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccccc--CCcccEEEE
Confidence 4668999999997 555666776 34599999999999999999998877 3 6899999986643 347999986
Q ss_pred hhhc-cCC-------------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALV-GMS-------------------KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalv-g~~-------------------~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.... ..+ .....++++++.++|+|||.+++..
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 4211 000 1124578999999999999988865
No 92
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.20 E-value=2e-10 Score=110.38 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEccccchhhcCCCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--GRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
..+.+|||+|||+ |.-++.+++ ..|+++|+++|+|+.|++.|++.++..+ .+ .+++|..+|+.+.. ....||+|
T Consensus 227 ~~~~~VLDLGCGt-Gvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~-~~~~fDlI 302 (378)
T PRK15001 227 NLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGV-EPFRFNAV 302 (378)
T ss_pred ccCCeEEEEeccc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccC-CCCCEEEE
Confidence 3346999999997 566677777 4789999999999999999999998776 33 47999999985432 22479999
Q ss_pred ehhhh--cc--CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAAL--VG--MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aal--vg--~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+..-- .+ .+.....+++....++|+|||.+.+..
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 87421 12 233455689999999999999988864
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2e-10 Score=106.81 Aligned_cols=139 Identities=25% Similarity=0.284 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119 117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195 (286)
Q Consensus 117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~ 195 (286)
++=++++.+.. .++++|||+|||. |.-||..++ .|+. |+|+|+||-|++.|+++++..| +...++....+..+
T Consensus 150 ~lcL~~Le~~~-~~g~~vlDvGcGS-GILaIAa~k---LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~ 223 (300)
T COG2264 150 SLCLEALEKLL-KKGKTVLDVGCGS-GILAIAAAK---LGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLE 223 (300)
T ss_pred HHHHHHHHHhh-cCCCEEEEecCCh-hHHHHHHHH---cCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccccchh
Confidence 33344444443 6899999999995 888888887 5665 9999999999999999999998 55434444444443
Q ss_pred hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcc-cccCcEEEEEecCc
Q 042119 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH-DLLDFEVLSAVHPN 269 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~-~l~gf~~~~~~~P~ 269 (286)
.+.. +.||+|+...+. +.-..+...+.+.++|||.+++..-=. .- ...|-.. .-.||++..+.++.
T Consensus 224 ~~~~-~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGIl~--~q-~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 224 VPEN-GPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGILE--DQ-AESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred hccc-CcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEeehH--hH-HHHHHHHHHhCCCeEeEEEecC
Confidence 3332 479999855543 566789999999999999999986100 00 0000011 11578887777764
No 94
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.19 E-value=2.4e-10 Score=85.60 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=80.2
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceeehhhh
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFLAAL 211 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~~aal 211 (286)
+|+++|||++ ..+..+++ .++.+++++|+++++++.+++.....+ ..++++..+|..+... ..++||+|+....
T Consensus 1 ~ildig~G~G-~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTG-ALALALAS--GPGARVTGVDISPVALELARKAAAALL--ADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCcc-HHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc--ccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999975 45555665 478899999999999999997544333 4789999999987654 4467999997765
Q ss_pred ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.....+....+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4321467789999999999999999875
No 95
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2e-10 Score=112.37 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcce
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDC 205 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~ 205 (286)
.+.++.+|||+||||+|.|.. +|....++++|+++|+++.+++.+++++++.| + ++++++++|+.+++.. .+.||.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTA-IAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccCCE
Confidence 467889999999999877654 45533357899999999999999999999999 4 4699999999876522 246999
Q ss_pred eehhhh---ccC---Ch---------------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAAL---VGM---SK---------------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aal---vg~---~~---------------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++++- .|. ++ ....++|.+..+.|||||.+++.+
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998542 222 11 123578999999999999999975
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=2.9e-10 Score=101.38 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
+......++.+|||+|||+ |.-++.+++ ....+|+++|+|+.+++.|+++++..| + +++++++|..+.. ..+.
T Consensus 29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~--~~~~~v~~vD~s~~~l~~a~~n~~~~~-~--~~~~~~~d~~~~~-~~~~ 101 (223)
T PRK14967 29 LAAEGLGPGRRVLDLCTGS-GALAVAAAA--AGAGSVTAVDISRRAVRSARLNALLAG-V--DVDVRRGDWARAV-EFRP 101 (223)
T ss_pred HHhcccCCCCeEEEecCCH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhC-C--eeEEEECchhhhc-cCCC
Confidence 3344557788999999997 666777887 233499999999999999999999888 3 6899999986643 2357
Q ss_pred cceeehhhh-ccCC-------------------hhHHHHHHHHHHhhccCCcEEEEe
Q 042119 203 YDCIFLAAL-VGMS-------------------KEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 203 fD~V~~aal-vg~~-------------------~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
||+|+...- +... ...-..+++++.+.|+|||++++-
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999986521 1000 011345788999999999999873
No 97
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.3e-10 Score=111.90 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=85.5
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~ 202 (286)
.+.++.+|||+||||++.|. .+|+.....++|+++|+++.+++.+++++++.| + ++|+++++|+.+.+. ..+.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhccccccccccc
Confidence 45788999999999977764 455533345799999999999999999999999 4 469999999987652 2247
Q ss_pred cceeehhhh---ccC---Chh---------------HHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAAL---VGM---SKE---------------EKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aal---vg~---~~~---------------~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
||.|++++- .|. .++ ...+++++..+.|||||+|++.+
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999998641 111 111 13589999999999999999865
No 98
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.5e-10 Score=111.92 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=84.9
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC 205 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~ 205 (286)
.+.++.+|||+||||++.| +.+|+...++++|+++|+++++++.+++++++.| +. +++++++|+.+....+ +.||+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t-~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKT-THIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred CCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcccccchhcccCCE
Confidence 4567899999999997665 4566533357899999999999999999999999 54 5999999998764333 47999
Q ss_pred eehhhh---ccC-----------Chh-------HHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAAL---VGM-----------SKE-------EKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aal---vg~-----------~~~-------~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++++- .|. +.. ...+++++..+.|||||.+++.+
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 997642 111 000 12468999999999999999754
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.18 E-value=2.7e-10 Score=111.19 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=83.9
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYD 204 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD 204 (286)
.+.++.+|||+||||++.|.. +|+ ..++++|+++|+++++++.+++++++.| +..++.+..+|..+... ..+.||
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~-la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTH-ILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHH-HHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccccC
Confidence 567889999999999777654 555 2457899999999999999999999999 55445557788765433 235799
Q ss_pred eeehhhh---ccC---Chh---------------HHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAAL---VGM---SKE---------------EKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aal---vg~---~~~---------------~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.|++++- .|. .++ ...++|.+..+.|||||.+++.+
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9997642 121 111 13579999999999999999974
No 100
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.18 E-value=4.1e-10 Score=100.40 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=84.5
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCccee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDCI 206 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~V 206 (286)
..++.+||+||||+ |..+..+++ .+++|+++|+++++++.|++.+...+ .+++++.+|+.+.+.. .+.||+|
T Consensus 46 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 46 GLFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALESG---LKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcC---CceEEEecCHHHhhhhcCCCccEE
Confidence 45788999999997 556677777 57899999999999999999988777 3689999998776532 2579999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+....+.. ..+...+++.+.+.|+|||.+++..
T Consensus 119 i~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 119 TCMEMLEH-VPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EEhhHhhc-cCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 87655432 2456689999999999999998864
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.17 E-value=3.5e-10 Score=104.65 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=83.1
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh--
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA-- 209 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a-- 209 (286)
.+|||+|||+ |.-++.+++ ..++++|+++|+|+++++.|+++++..| +.++++|+++|..+... -..||+|+..
T Consensus 116 ~~vLDlG~Gs-G~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~~-~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGS-GCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPLA-GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccCc-CCCccEEEECCC
Confidence 7999999996 667778887 4678999999999999999999999999 66789999999865321 1269998753
Q ss_pred --------------------hhccC--ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 210 --------------------ALVGM--SKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 210 --------------------alvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
++.|. .......++++..++|+|||.+++-.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 01110 012456789999999999999998764
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=1.6e-10 Score=107.70 Aligned_cols=113 Identities=26% Similarity=0.358 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 114 KLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 114 ~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
.-+++=..++.+. ..++++|||||||+ |.-++.-++ .|+ +|+++|+||.|++.|+++++..| +++++.+. .
T Consensus 146 ~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k---lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~--~ 217 (295)
T PF06325_consen 146 PTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK---LGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS--L 217 (295)
T ss_dssp HHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH---TTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES--C
T ss_pred HHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH---cCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE--E
Confidence 3345545555554 47789999999996 888888777 455 79999999999999999999999 78887663 2
Q ss_pred ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+... ..||+|+...+. ..-..+...+.++|+|||.+++..
T Consensus 218 ~~~~~~--~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 218 SEDLVE--GKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp TSCTCC--S-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred eccccc--ccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 222222 679999844332 566678889999999999999965
No 103
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=4.6e-10 Score=110.13 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=84.8
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
.+.++++|||+||||++.| +.+|+....+++|+++|+++++++.+++.+++.| + ++|+++++|+.+... ...||.|
T Consensus 247 ~~~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~~-~~~fD~V 322 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFSP-EEQPDAI 322 (445)
T ss_pred CCCCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCccccccc-CCCCCEE
Confidence 4567899999999997665 4555533346799999999999999999999999 4 579999999987653 2479999
Q ss_pred ehhhh---ccC-----------Ch-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAAL---VGM-----------SK-------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aal---vg~-----------~~-------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++++- .|+ +. ....++|.++.+.++|||++++.+
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 97531 111 11 113468999999999999999975
No 104
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.16 E-value=4.9e-10 Score=100.44 Aligned_cols=108 Identities=25% Similarity=0.322 Sum_probs=82.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++.+...| + ++++++++|+.+. ...+.||+|+.
T Consensus 86 ~~~~~ilDig~G~-G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~-~~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGS-GAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEP-LPGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhcc-CcCCceeEEEE
Confidence 4567999999996 666777777 4678999999999999999999999988 4 4799999998763 23357999985
Q ss_pred hhh-c------cCChh------------------HHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AAL-V------GMSKE------------------EKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aal-v------g~~~~------------------~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.-- + .+..+ ....+++++.+.|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 210 0 01111 124688999999999999998653
No 105
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.16 E-value=4.8e-10 Score=105.82 Aligned_cols=110 Identities=15% Similarity=0.034 Sum_probs=86.3
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
...++++|+|+|||++++ ++..+. .|++|+|+|+|+.+++.|+++++..| +.+ +++.++|+.+++...+.||+|
T Consensus 179 ~~~~g~~vLDp~cGtG~~-lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGF-LIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCCcCEEEECCCCCCHH-HHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCcccCCCCEE
Confidence 457889999999998554 455544 68999999999999999999999999 554 999999998876654679999
Q ss_pred ehhhhc-------cC-ChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 207 FLAALV-------GM-SKEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 207 ~~aalv-------g~-~~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
+.+.-- +. ......++++++.+.|+|||.+++-..+
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 875211 11 1123578999999999999998887643
No 106
>PRK14968 putative methyltransferase; Provisional
Probab=99.16 E-value=5.3e-10 Score=95.67 Aligned_cols=106 Identities=21% Similarity=0.342 Sum_probs=80.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR-MKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~-i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
.++++||++|||. |..+..+++ .+.+|+++|+|+++++.+++.++..+ +.++ +.++++|..+...+ ..||+|+
T Consensus 22 ~~~~~vLd~G~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGS-GIVAIVAAK---NGKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL 95 (188)
T ss_pred cCCCEEEEEcccc-CHHHHHHHh---hcceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence 5778999999996 677888887 38999999999999999999999888 5444 99999998663322 2699997
Q ss_pred hhhhcc-------------------C-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVG-------------------M-SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg-------------------~-~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...-.. . .......+++++.+.|+|||.+++-.
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 542110 0 01224568999999999999877653
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=5.7e-10 Score=108.93 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=83.5
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYD 204 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD 204 (286)
.+.++.+|||+||||++.|. .+++ ..++++|+++|+++++++.+++.+++.| + +++++++|+.+... ..+.||
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTA-HILE-LAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCCCEEEEeCCCCChHHH-HHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCCCC
Confidence 46788999999999977665 4555 2456899999999999999999999999 4 37899999976532 124699
Q ss_pred eeehhhhc---cC-----------Ch-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALV---GM-----------SK-------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalv---g~-----------~~-------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.|++++-- |. .. ....+++++..+.|+|||.+++.+
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99965421 10 11 123479999999999999999865
No 108
>PRK01581 speE spermidine synthase; Validated
Probab=99.15 E-value=3.2e-10 Score=108.10 Aligned_cols=111 Identities=23% Similarity=0.325 Sum_probs=83.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----HhcCCCCCCeEEEEccccchhhcC-CC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-----ASDAEFEGRMKFLTRDIMEVKEQL-GE 202 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-----~~~g~l~~~i~f~~~D~~~~~~~l-~~ 202 (286)
..|++||+|||| .|.++..+.+ +.+..+|+++|+|+++++.|++.. .+.+.-..|++++.+|+.+..... +.
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 678899999999 5777777776 345689999999999999999731 122211479999999998865443 46
Q ss_pred cceeehhhhccC----ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 203 YDCIFLAALVGM----SKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 203 fD~V~~aalvg~----~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
||+|+++..-.. ..--..++++.+++.|+|||++++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999998853211 111135799999999999999998753
No 109
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.15 E-value=2.1e-10 Score=104.39 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=85.8
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cC
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QL 200 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l 200 (286)
+...++.+|++|++-|+|.+.+| ..||+...|.++|+.+|+.++..+.|++.++..| +.+++++.+.|+.+..+ ++
T Consensus 33 ~~~l~i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHTT--TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--STT-
T ss_pred HHHcCCCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccccc
Confidence 34557899999999999986665 5677667789999999999999999999999999 78899999999965333 22
Q ss_pred -CCcceeehhhhccCChhHHHHHHHHHHhhc-cCCcEEEEee
Q 042119 201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYM-KDGGILLVRS 240 (286)
Q Consensus 201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l-~pgg~lv~r~ 240 (286)
..||.||++- ++..+++.++.+.| +|||++++=+
T Consensus 111 ~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 111 ESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEEC
Confidence 4699999883 46668999999999 9999999854
No 110
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=4.4e-10 Score=110.66 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc--hhhcCCCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME--VKEQLGEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~--~~~~l~~fD~V 206 (286)
.++++|||||||+ |..+..+++ .+.+|+|+|+++++++.+++. .+ ..++++|+++|+.+ .+.+.+.||+|
T Consensus 36 ~~~~~vLDlGcG~-G~~~~~la~---~~~~v~giD~s~~~l~~a~~~---~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGI-GRFTGELAK---KAGQVIALDFIESVIKKNESI---NG-HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCc-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHH---hc-cCCceEEEEecccccccCCCCCCEEEE
Confidence 4678999999996 666777887 467999999999999988764 23 23689999999864 23333579999
Q ss_pred ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+..... .++.++..++++++.+.|+|||.+++++
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 976443 3344556789999999999999999986
No 111
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.12 E-value=7e-10 Score=98.01 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=83.5
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeeh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFL 208 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~ 208 (286)
.+.+||++|||+ |..+..+++ .+.+++++|+++.+++.+++.+...+. .+++|.++|+.+.+... +.||+|+.
T Consensus 45 ~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEEe
Confidence 578999999997 555667776 467899999999999999999887772 36999999998766543 57999987
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...... ..+...+++.+.+.|+|||.+++..
T Consensus 119 ~~~l~~-~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEH-VPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHh-CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 654432 2455689999999999999998865
No 112
>PRK05785 hypothetical protein; Provisional
Probab=99.12 E-value=2.7e-10 Score=102.24 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=72.8
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
++.+|||||||+ |..+..+++. . +.+|+|+|+|++|++.|++. . .++++|+.+++...+.||+|+..
T Consensus 51 ~~~~VLDlGcGt-G~~~~~l~~~-~-~~~v~gvD~S~~Ml~~a~~~----~------~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGK-GELSYHFKKV-F-KYYVVALDYAENMLKMNLVA----D------DKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCC-CHHHHHHHHh-c-CCEEEEECCCHHHHHHHHhc----c------ceEEechhhCCCCCCCEEEEEec
Confidence 478999999997 5566777773 2 78999999999999999863 1 35789998888777789999876
Q ss_pred hhccCChhHHHHHHHHHHhhccCCc
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGG 234 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg 234 (286)
..+. ..+++.+++++++|++||+.
T Consensus 118 ~~l~-~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 FALH-ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Chhh-ccCCHHHHHHHHHHHhcCce
Confidence 5442 34677889999999999954
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.11 E-value=6.1e-10 Score=111.03 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=82.9
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
++.+|||||||+ |..++.+|+ ..++++|+++|+|++|++.|++++...| +.++++++++|..+.. ..+.||+|+..
T Consensus 138 ~~~~VLDlG~Gs-G~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~-~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGS-GCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENI-EKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCch-hHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhC-cCCCccEEEEC
Confidence 457999999996 666777776 3689999999999999999999999988 7789999999985522 22469999852
Q ss_pred -----------------------hhccC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 210 -----------------------ALVGM--SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 210 -----------------------alvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+.|. ..+...++++++.++|+|||.+++-.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11111 11234568889999999999999854
No 114
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.10 E-value=1.6e-09 Score=101.92 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=81.7
Q ss_pred chhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---CCCCeE
Q 042119 111 NYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE---FEGRMK 187 (286)
Q Consensus 111 ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~---l~~~i~ 187 (286)
++...++.-...+...+..++.+|||||||+ |..++.+++ .|.+|+|+|+|++|++.|++.....+. ...+++
T Consensus 125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~ 200 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPK 200 (315)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccceE
Confidence 4444444333333332223578999999996 667788888 589999999999999999999876531 124789
Q ss_pred EEEccccchhhcCCCcceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 188 FLTRDIMEVKEQLGEYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 188 f~~~D~~~~~~~l~~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|.++|+.++ .+.||+|+.... .+++.+....+++.+.+ +.+|++++.
T Consensus 201 f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 201 FEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 999997543 257999885433 34444444567777775 466666554
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.09 E-value=1.5e-09 Score=100.78 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=112.3
Q ss_pred hHHHHHHhcCCCCccc-ccccCcCccc-hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEe
Q 042119 86 ELEFATFLTKIPQPLN-NLSLFPYYGN-YVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFD 163 (286)
Q Consensus 86 E~~~A~~l~~~~~p~~-~L~~fpy~~n-y~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iD 163 (286)
|..|.+++...+++-. +=..|.-|+- ..+|+..-+.-+....++++++|||+|||| |.++..+|+..-+..+|+++|
T Consensus 86 ~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD 164 (293)
T PTZ00146 86 ESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVE 164 (293)
T ss_pred cccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEE
Confidence 5666666655432210 0012333322 234444444545455678999999999998 667778887433457999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 164 IDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 164 id~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+++.+.+...+.+... .+|.++.+|+.... .....||+||.+... ..+...++.++.+.|||||.+++.-
T Consensus 165 ~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 165 FSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEE
Confidence 9988765555544322 46899999986421 123579999987532 2344456678999999999999842
Q ss_pred cCcceeeecccCC-----cccc--cCcEEEEEecCcc-cceeeeEEEeec
Q 042119 241 AKGARAFLYPVVV-----EHDL--LDFEVLSAVHPND-DVINSVVLVRNS 282 (286)
Q Consensus 241 ~~g~r~~lyp~v~-----~~~l--~gf~~~~~~~P~~-~vinsvi~~r~~ 282 (286)
-+.-...-.|+-+ .+.+ .||+.+.+++..+ +--.++|+++.+
T Consensus 238 ka~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 238 KANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred eccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 1110011111100 0112 4899887776443 334456666653
No 116
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.09 E-value=8.5e-10 Score=100.17 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=87.0
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Ccce
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EYDC 205 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~fD~ 205 (286)
+....+|||+|||. |.-++++|++ .+.++|++||+++++.+.|++.++..+ +++||+++++|+.+...... +||+
T Consensus 42 ~~~~~~IlDlGaG~-G~l~L~la~r-~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 42 VPKKGRILDLGAGN-GALGLLLAQR-TEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred cccCCeEEEecCCc-CHHHHHHhcc-CCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcccccccCE
Confidence 35589999999995 7788889984 566999999999999999999999988 89999999999998776553 5999
Q ss_pred eehhh-----hcc------------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAA-----LVG------------MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aa-----lvg------------~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+..- ... +..-+-+++++...+.|||||.+.+-.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 86431 111 000124568888999999999987753
No 117
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.09 E-value=1.4e-09 Score=103.48 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=81.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.+|||+|||+ |.-++.+++ ..++.+|+++|+|+.|++.|++.++..+ + ..+++.+|+.+. ..+.||+|+.
T Consensus 195 ~~~g~VLDlGCG~-G~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~--~~~~fDlIvs 267 (342)
T PRK09489 195 HTKGKVLDVGCGA-GVLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSD--IKGRFDMIIS 267 (342)
T ss_pred cCCCeEEEeccCc-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEcccccc--cCCCccEEEE
Confidence 4456899999997 556667776 3688899999999999999999999888 4 357888888542 2257999986
Q ss_pred hhhc--cC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALV--GM--SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalv--g~--~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.--. +. +.....+++.++.++|+|||.+.+..
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 4321 11 23556789999999999999987764
No 118
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=3.5e-10 Score=99.58 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE-EEEccccchhh-cCCCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK-FLTRDIMEVKE-QLGEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~-f~~~D~~~~~~-~l~~fD~V 206 (286)
...-.||+|||||++- .-+-. -.|+.+||++|.+|.|-+.|.+-++.... .++. |++|++.+++. +.++||.|
T Consensus 75 ~~K~~vLEvgcGtG~N--fkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGAN--FKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred cCccceEEecccCCCC--ccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeE
Confidence 3445789999998642 11111 13799999999999999999998887652 5676 99999998873 34589998
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+. .++-++.++..+.|.++.|.|+|||++++-.
T Consensus 150 V~-TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 150 VC-TLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EE-EEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 74 4555566888999999999999999999875
No 119
>PRK06202 hypothetical protein; Provisional
Probab=99.07 E-value=7.5e-10 Score=99.05 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKH---HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
.++.+|||||||++. .+..|++. ..++.+|+|+|+++++++.|++.... .++++.++|+.+++...+.||+
T Consensus 59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccE
Confidence 567899999999754 45566642 23567999999999999999987543 3467777776655554468999
Q ss_pred eehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+..... ..+.++..+++.++.+.++ | .+++.+
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~-~~~i~d 166 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR-R-LVLHND 166 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC-e-eEEEec
Confidence 9876433 3444446689999999987 4 444443
No 120
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.07 E-value=1.2e-09 Score=99.68 Aligned_cols=135 Identities=21% Similarity=0.192 Sum_probs=91.2
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cC-CCcceee
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QL-GEYDCIF 207 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l-~~fD~V~ 207 (286)
.+.+|+|+|||+ |.-++.+++ ..++.+|+++|+|++|++.|+++++..| ++|+++|+.+... .+ +.||+|+
T Consensus 86 ~~~~vLDlg~Gs-G~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGS-GAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEE
Confidence 356999999997 555666776 3678899999999999999999988766 3789999865332 12 4699998
Q ss_pred hhhh-c------cCChh------------------HHHHHHHHHHhhccCCcEEEEeecCcceeeecccC-CcccccCcE
Q 042119 208 LAAL-V------GMSKE------------------EKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV-VEHDLLDFE 261 (286)
Q Consensus 208 ~aal-v------g~~~~------------------~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v-~~~~l~gf~ 261 (286)
..-- + .++.+ -..++++...++|+|||.+++-.... + .+.+ ..-.-.||+
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--~--~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--Q--APLAVEAFARAGLI 234 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--h--HHHHHHHHHHCCCC
Confidence 5421 1 01111 13478888889999999999875322 1 1110 100114788
Q ss_pred EEEEecCcccceeeeE
Q 042119 262 VLSAVHPNDDVINSVV 277 (286)
Q Consensus 262 ~~~~~~P~~~vinsvi 277 (286)
.....||.- .-+|+
T Consensus 235 ~~~~~~~~~--~~~~~ 248 (251)
T TIGR03704 235 ARVASSEEL--YATVV 248 (251)
T ss_pred ceeeEcccc--cceee
Confidence 888888875 44444
No 121
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=94.49 Aligned_cols=108 Identities=24% Similarity=0.398 Sum_probs=83.7
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh-
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL- 208 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~- 208 (286)
...|||++|||. |.-...|++..+ ....+|+|.|+.|+++|+.++++.| +++.|+|.+.|+.+-.+..++||+|+-
T Consensus 67 ~A~~VlDLGtGN-G~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 67 QADRVLDLGTGN-GHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cccceeeccCCc-hHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeec
Confidence 334999999996 777788887433 3458999999999999999999999 788899999999875444568999963
Q ss_pred ---hh--hccCChhHH-HHHHHHHHhhccCCcEEEEee
Q 042119 209 ---AA--LVGMSKEEK-LTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 ---aa--lvg~~~~~k-~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+| +-++....| .-.+..+.+.|+|||++++.+
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 22 223333333 456788899999999999986
No 122
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.06 E-value=1.5e-09 Score=105.05 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcC----CCc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQL----GEY 203 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l----~~f 203 (286)
.++++||++|||+++++ +..+. ....+|+++|+|+.+++.|+++++..| +. ++++|+++|+.+....+ ..|
T Consensus 219 ~~g~rVLDlfsgtG~~~-l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFA-VSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 46799999999987764 44443 234499999999999999999999998 65 58999999998865432 369
Q ss_pred ceeehhhhc-cCCh-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALV-GMSK-------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalv-g~~~-------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+++--- .-.. ....+++....+.|+|||.+++-+
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 999987321 0011 234556667889999999999865
No 123
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=98.43 Aligned_cols=108 Identities=25% Similarity=0.362 Sum_probs=81.4
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..++.+|||+|||+ |..++.+++ ..+..+|+++|+|+.+++.|++.+. .+ ...+++|+++|+.+... .+.||+|+
T Consensus 106 ~~~~~~vLDiG~Gs-G~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~~~~-~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGS-GAIALALAK-ERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFEPLP-GGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcH-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccCcCC-CCceeEEE
Confidence 35678999999996 666778887 4678999999999999999999988 33 34789999999854221 24799997
Q ss_pred hhhh-c------cCC------------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAAL-V------GMS------------------KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aal-v------g~~------------------~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..-- + .+. .+....+++++.+.|+|||.+++..
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5210 0 000 1233678889999999999999854
No 124
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.05 E-value=2e-09 Score=99.00 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=82.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEEEccccchhhcC-CCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F-EGRMKFLTRDIMEVKEQL-GEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l-~~~i~f~~~D~~~~~~~l-~~fD~ 205 (286)
..|++||+||||.+ .++..+++ +.+..+|+++|+|+++++.|++.+...+. + ..+++++.+|+.+..... +.||+
T Consensus 71 ~~p~~VL~iG~G~G-~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDG-GVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCch-HHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 56779999999964 45555655 34467999999999999999998765420 1 358999999987654432 47999
Q ss_pred eehhhhccC-ChhH--HHHHHHHHHhhccCCcEEEEeec
Q 042119 206 IFLAALVGM-SKEE--KLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 206 V~~aalvg~-~~~~--k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
|+.+..-.. +... ..++++.+.+.|+|||++++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 998765211 1112 35789999999999999999753
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.9e-08 Score=93.29 Aligned_cols=104 Identities=27% Similarity=0.375 Sum_probs=81.3
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh---
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA--- 209 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a--- 209 (286)
+|+|||||+ |.-|+.+|+ ..+.++|+++|+|++|++.|++++...| + .++.++.+|..+-.. +.||+|+..
T Consensus 113 ~ilDlGTGS-G~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGS-GAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCCh-HHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence 899999996 777888888 5788999999999999999999999999 5 778888888744222 368887432
Q ss_pred -------------------hhccCC--hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 210 -------------------ALVGMS--KEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 210 -------------------alvg~~--~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
++++.. .+-..+++.++.+.|+|||.+++..+.
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 122111 234678899999999999999998763
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.02 E-value=1.5e-09 Score=94.21 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------hc
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------EQ 199 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------~~ 199 (286)
+.++.+||++|||+++++.....+ ..+.++|+++|+++.+ + . .+++++++|+.+.. ..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~-~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQ-VGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHH-hCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHHHHHHHHhC
Confidence 478899999999998877665544 3456799999999864 2 1 35889999986532 12
Q ss_pred CCCcceeehhhh---ccC-C------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAAL---VGM-S------KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aal---vg~-~------~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+.||+|+.... .|. . .+....++..+.+.|+|||++++-.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 346999996431 111 1 1223679999999999999999853
No 127
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.01 E-value=3.7e-09 Score=102.56 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=79.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~V~ 207 (286)
.++.+|||+|||+ |.-++.+++ ..++++|+++|+|++|++.|+++++..| .+++|+++|..+.... .+.||+|+
T Consensus 250 ~~~~rVLDLGcGS-G~IaiaLA~-~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 250 PENGRVWDLGTGS-GAVAVTVAL-ERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCCCEEEEEeChh-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchhccccccCCCccEEE
Confidence 4567999999997 556677776 3688999999999999999999999877 3899999998653221 24699998
Q ss_pred hhh----------------------hccC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAA----------------------LVGM--SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aa----------------------lvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..- +.|. ..+-..++++++.++|+|||.+++-.
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 632 1110 00124467788889999999988754
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.01 E-value=2e-09 Score=111.23 Aligned_cols=107 Identities=12% Similarity=0.206 Sum_probs=83.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcC-CCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQL-GEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l-~~fD~ 205 (286)
.++++||++|||+++ .++.+|+ .|+ +|+++|+|+.+++.|+++++..| +. ++++|+++|+.+....+ ..||+
T Consensus 537 ~~g~rVLDlf~gtG~-~sl~aa~---~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGT-ASVHAAL---GGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCH-HHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCE
Confidence 457999999999755 5677776 355 69999999999999999999999 65 68999999998765433 47999
Q ss_pred eehhhh--cc--------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAAL--VG--------MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aal--vg--------~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+++-- .. .......+++..+.++|+|||.+++-+
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 997631 10 012345678999999999999998865
No 129
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.01 E-value=3.5e-09 Score=93.94 Aligned_cols=134 Identities=14% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------hc
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------EQ 199 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------~~ 199 (286)
..++.+||||||||+..|. .+++...++.+|++||+++ + .+ . .+++++++|+.+.. ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~-~l~~~~~~~~~V~aVDi~~-~----------~~-~-~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQ-YAVTQIGDKGRVIACDILP-M----------DP-I-VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHH-HHHHHcCCCceEEEEeccc-c----------cC-C-CCcEEEecCCCChHHHHHHHHHhC
Confidence 4778899999999976654 4555334568999999998 1 22 1 35899999998743 23
Q ss_pred CCCcceeehhhhc---cCChhH-------HHHHHHHHHhhccCCcEEEEeecCc--ceeeecccCCcccc-cCcEEEEEe
Q 042119 200 LGEYDCIFLAALV---GMSKEE-------KLTILGHIRKYMKDGGILLVRSAKG--ARAFLYPVVVEHDL-LDFEVLSAV 266 (286)
Q Consensus 200 l~~fD~V~~aalv---g~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~~g--~r~~lyp~v~~~~l-~gf~~~~~~ 266 (286)
.+.||+|+.+... +.+..+ -..+++.+.+.|+|||.+++....+ ...++ ..+ ..|+...+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l------~~l~~~f~~v~~~ 188 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL------REIRSLFTKVKVR 188 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH------HHHHhCceEEEEE
Confidence 3579999964311 111001 1468999999999999999965332 11222 123 468888888
Q ss_pred cCccc---ceeeeEEEee
Q 042119 267 HPNDD---VINSVVLVRN 281 (286)
Q Consensus 267 ~P~~~---vinsvi~~r~ 281 (286)
.|... -...+++++.
T Consensus 189 Kp~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 189 KPDSSRARSREVYIVATG 206 (209)
T ss_pred CCccccccCceeEEEeec
Confidence 88653 2223555554
No 130
>PLN02823 spermine synthase
Probab=98.99 E-value=2.9e-09 Score=101.06 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=82.5
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEccccchhhcC-CCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA--EFEGRMKFLTRDIMEVKEQL-GEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g--~l~~~i~f~~~D~~~~~~~l-~~fD~ 205 (286)
..+++||.||+| .|.++..+.+ +.+..+|+.+|+|++.++.|++.+...+ .-..|++++.+|+.+..... +.||+
T Consensus 102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 467899999999 5777776766 3456789999999999999999875321 01379999999998876543 47999
Q ss_pred eehhhhccCC--hhH---HHHHHH-HHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMS--KEE---KLTILG-HIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~--~~~---k~~vl~-~l~~~l~pgg~lv~r~ 240 (286)
||++..-... ... -.++++ .+.+.|+|||++++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9998542110 010 246887 8999999999998864
No 131
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.98 E-value=2.1e-09 Score=97.77 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=82.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEccccchhhcCC--Ccc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--FEGRMKFLTRDIMEVKEQLG--EYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--l~~~i~f~~~D~~~~~~~l~--~fD 204 (286)
..+++||.||.|. |.++-.+.+ +.+-.+|+.+|+||+.++.|++.+..... -..|++++.+|+........ .||
T Consensus 75 ~~p~~VLiiGgG~-G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGD-GGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTT-SHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCC-hhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 4799999999995 666667766 45568999999999999999998765321 13799999999988766543 599
Q ss_pred eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++..-...... -.++++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99988753111112 2589999999999999999986
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=1.3e-08 Score=86.83 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=92.4
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.....++++|||||||++.+ +..+++ .+.+|+++|+|+.+++.+++.+.. .++++++++|+.+.......||
T Consensus 8 ~~~~~~~~~vLEiG~G~G~l-t~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGAL-TEELLE---RAARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred hcCCCCcCEEEEECCCccHH-HHHHHh---cCCeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCCC
Confidence 34556788999999997554 456666 368999999999999999998754 2589999999988765434599
Q ss_pred eeehhhhccCChhHHHHHHHHHHhh--ccCCcEEEEeecCcceeeeccc------CCc-----ccc-cCcEEE-EEecCc
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKY--MKDGGILLVRSAKGARAFLYPV------VVE-----HDL-LDFEVL-SAVHPN 269 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~--l~pgg~lv~r~~~g~r~~lyp~------v~~-----~~l-~gf~~~-~~~~P~ 269 (286)
.|+..-... .-.+++..+.+. ..++|++++...-.-|-.--|- ... .+. ..|++- ..++|.
T Consensus 80 ~vi~n~Py~----~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~ 155 (169)
T smart00650 80 KVVGNLPYN----ISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPP 155 (169)
T ss_pred EEEECCCcc----cHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCC
Confidence 988543221 112455555543 3478888886421111111110 000 011 122222 456799
Q ss_pred ccceeeeEEEeec
Q 042119 270 DDVINSVVLVRNS 282 (286)
Q Consensus 270 ~~vinsvi~~r~~ 282 (286)
++|--+|+..+++
T Consensus 156 PkV~s~~~~~~~~ 168 (169)
T smart00650 156 PKVDSAVVRLERR 168 (169)
T ss_pred CCceEEEEEEEEC
Confidence 9998888877654
No 133
>PRK03612 spermidine synthase; Provisional
Probab=98.95 E-value=3.7e-09 Score=105.75 Aligned_cols=109 Identities=18% Similarity=0.336 Sum_probs=80.5
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhcC--CC-CCCeEEEEccccchhhcC-C
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSI--VASDA--EF-EGRMKFLTRDIMEVKEQL-G 201 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~g--~l-~~~i~f~~~D~~~~~~~l-~ 201 (286)
+++++||+||||. |.++..+++ .++ .+|+++|+|+++++.|++. +.... .+ .+|++++++|+.+..... +
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~--~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLK--YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh--CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 5789999999995 666667776 255 8999999999999999993 32211 02 268999999998765433 4
Q ss_pred CcceeehhhhccCChh-H---HHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKE-E---KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~-~---k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.||+|+.+..-..... . ..++++.+.++|+|||++++..
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 7999998753211111 1 2468999999999999999865
No 134
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.94 E-value=9.9e-09 Score=90.64 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~ 207 (286)
..+.+|||+|||.+.++...+++ ...+|+++|+++++++.++++++..| + ++++++++|+.+..... ..||+||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHHhhcCCCceEEE
Confidence 45789999999976555445555 34799999999999999999999999 4 57999999997754322 3599999
Q ss_pred hhhhccCChhHHHHHHHHHHhh--ccCCcEEEEeec
Q 042119 208 LAALVGMSKEEKLTILGHIRKY--MKDGGILLVRSA 241 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~--l~pgg~lv~r~~ 241 (286)
++--- ...-..++++.+.+. ++|++++++...
T Consensus 127 ~DPPy--~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPF--RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCC--CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 87421 112244566666653 789998888754
No 135
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.91 E-value=7.7e-09 Score=95.88 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=86.5
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEccccchhhcCC-Ccce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA--EFEGRMKFLTRDIMEVKEQLG-EYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g--~l~~~i~f~~~D~~~~~~~l~-~fD~ 205 (286)
..+++||.||.|. |.|+-.+.+ +.+-.++|.+||||+.+++||+.+.... ....|++++.+|+.+...... .||+
T Consensus 75 ~~pk~VLiiGgGd-G~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGD-GGTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCc-cHHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 4457999999996 556666666 5778999999999999999999976543 123899999999998877665 5999
Q ss_pred eehhhhccCChhH-----HHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEE-----KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~-----k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++++.=+ ..+ -.++++.+++.|+++|+++..+
T Consensus 153 Ii~D~tdp--~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDP--VGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCC--CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99987522 011 2579999999999999999994
No 136
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.91 E-value=1.1e-08 Score=91.95 Aligned_cols=100 Identities=26% Similarity=0.361 Sum_probs=79.6
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
.....++|+|||+|. |.-++.+++ .+|+.+++.+|. |+.++.+++ . +||+|+.||.. .++..+|++
T Consensus 97 d~~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f---~~~P~~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGS-GHFAIALAR-AYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFF---DPLPVADVY 162 (241)
T ss_dssp TTTTSSEEEEET-TT-SHHHHHHHH-HSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TT---TCCSSESEE
T ss_pred cccCccEEEeccCcc-hHHHHHHHH-HCCCCcceeecc-Hhhhhcccc-----c---cccccccccHH---hhhccccce
Confidence 346778999999997 455566666 489999999999 899999998 2 79999999985 344459999
Q ss_pred ehhhhc-cCChhHHHHHHHHHHhhccCC--cEEEEee
Q 042119 207 FLAALV-GMSKEEKLTILGHIRKYMKDG--GILLVRS 240 (286)
Q Consensus 207 ~~aalv-g~~~~~k~~vl~~l~~~l~pg--g~lv~r~ 240 (286)
++...+ .++.++-.++|+++++.|+|| |+|++-+
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 987765 678888899999999999999 9998875
No 137
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.89 E-value=2.7e-08 Score=93.46 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=74.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~ 207 (286)
.++.+|||+|||. |.-++.+|+ .+.+|+|+|+++++++.|++.++..| + ++++|+++|+.+..... +.||+|+
T Consensus 172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 3578999999997 566788888 67899999999999999999999999 5 68999999998765432 4699999
Q ss_pred hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
++--- |+ ...+++.+.+ ++|++++.+.
T Consensus 246 ~dPPr~G~----~~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 246 VNPPRRGI----GKELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred ECCCCCCc----cHHHHHHHHH-cCCCeEEEEE
Confidence 87321 21 1234444443 5676655543
No 138
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.4e-08 Score=92.79 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=80.0
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
...+.+|||+|||. |.-++.+|+ ..|.+++|-+|+|..|++.||++++..+ ++.. .+..+|+.+-.. ++||+|+
T Consensus 156 ~~~~~~vlDlGCG~-Gvlg~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~~~~v~--~kfd~Ii 229 (300)
T COG2813 156 PDLGGKVLDLGCGY-GVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNLYEPVE--GKFDLII 229 (300)
T ss_pred ccCCCcEEEeCCCc-cHHHHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEeccccccc--ccccEEE
Confidence 34556999999996 555677887 4889999999999999999999999988 4443 677788755333 2799998
Q ss_pred hhhhc--cCCh--hHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALV--GMSK--EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalv--g~~~--~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..--+ |... .--++++..-.++|++||-|-+.-
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 54322 2211 223579999999999999876653
No 139
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.87 E-value=1.7e-08 Score=93.83 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=80.4
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
.-.+++|||||||. |+=+..|++ .|+ .|+|||.++--....+-+-+-.| ...++.+.---+.+++. .+.||+|
T Consensus 113 ~L~gk~VLDIGC~n-GY~~frM~~---~GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNN-GYYSFRMLG---RGAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCC-cHHHHHHhh---cCCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc-cCCcCEE
Confidence 46789999999996 677777877 455 69999999988877666656666 33344444334556665 6789999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|.... -.+..+....|.+++..|+|||.+++-+
T Consensus 187 F~MGV-LYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 187 FSMGV-LYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEeee-hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 97644 3455788899999999999999999876
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.87 E-value=2.2e-08 Score=98.27 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=76.2
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~ 202 (286)
...++.+|||+|||+ |.-++.+|+ .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.+.... .+.
T Consensus 294 ~~~~~~~VLDlgcGt-G~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 294 DPQPGDRVLDLFCGL-GNFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred cCCCCCEEEEEeccC-CHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhhhhhcCC
Confidence 346778999999997 555677887 45899999999999999999999988 4 5799999999764321 246
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
||+|+++--- ....++++.+.+ ++|++++.+.
T Consensus 368 fD~Vi~dPPr----~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 368 FDKVLLDPPR----AGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CCEEEECcCC----cChHHHHHHHHh-cCCCeEEEEE
Confidence 9999976321 112245666665 5888776665
No 141
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=6.9e-09 Score=88.17 Aligned_cols=79 Identities=11% Similarity=0.182 Sum_probs=63.4
Q ss_pred EEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 160 DNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 160 ~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
+|+|+|++|++.|++..+.. + ...+++|+++|+.+++.+.+.||+|+....+. ..+++.+++++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCCCCCCeeEEEecchhh-cCCCHHHHHHHHHHHcCcCeEEE
Confidence 58999999999998776532 2 23589999999999887767899998654332 23678899999999999999998
Q ss_pred Eee
Q 042119 238 VRS 240 (286)
Q Consensus 238 ~r~ 240 (286)
+.+
T Consensus 79 i~d 81 (160)
T PLN02232 79 ILD 81 (160)
T ss_pred EEE
Confidence 764
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.84 E-value=3.3e-08 Score=96.46 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=77.2
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~ 202 (286)
...++.+|||+|||+ |..++.+|+ ...+|+++|+|+++++.|+++++..| + ++++|+++|+.+.... -..
T Consensus 289 ~~~~~~~vLDl~cG~-G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 289 ELQGEELVVDAYCGV-GTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred ccCCCCEEEEcCCCc-CHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHhcCCC
Confidence 346678999999996 666778888 45799999999999999999999988 4 6899999999764332 135
Q ss_pred cceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 203 YDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 203 fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
||+|+++-- .|+ ..++++.+.+ ++|++++.+.
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 999997642 122 2456776664 7888766553
No 143
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.79 E-value=8.2e-08 Score=92.37 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=76.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~ 207 (286)
.++.+|||+|||. |.-++.+|. .+.+|++||+|+.|++.|+++++..| + ++++|+++|+.+..... ..||+|+
T Consensus 232 ~~~~~vLDL~cG~-G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 232 IPVTQMWDLFCGV-GGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred cCCCEEEEccCCc-cHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 4568999999996 555677776 67899999999999999999999999 4 58999999997755433 4699999
Q ss_pred hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
++--- |+ ..++++.+.+ ++|++++.+.
T Consensus 306 ~DPPr~G~----~~~~l~~l~~-~~p~~ivyvs 333 (374)
T TIGR02085 306 VNPPRRGI----GKELCDYLSQ-MAPKFILYSS 333 (374)
T ss_pred ECCCCCCC----cHHHHHHHHh-cCCCeEEEEE
Confidence 87321 22 2356666654 6888776664
No 144
>PLN02672 methionine S-methyltransferase
Probab=98.78 E-value=4.1e-08 Score=104.77 Aligned_cols=109 Identities=24% Similarity=0.232 Sum_probs=81.1
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------------CCCCeEEEEccccch
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--------------FEGRMKFLTRDIMEV 196 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--------------l~~~i~f~~~D~~~~ 196 (286)
+.+|+|+|||. |.-++.+|+ ..+.++|+++|+|++|++.|+++++..+. +.++++|+++|..+.
T Consensus 119 ~~~VLDlG~GS-G~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGN-GWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecch-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 56999999996 777888887 46778999999999999999999987541 235899999999765
Q ss_pred hhcCC-Ccceeehhh-hc------cCCh------------------------------hHHHHHHHHHHhhccCCcEEEE
Q 042119 197 KEQLG-EYDCIFLAA-LV------GMSK------------------------------EEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 197 ~~~l~-~fD~V~~aa-lv------g~~~------------------------------~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
..+.+ .||+|+-.- .| .|.+ .-..+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 43322 599875221 00 1111 1136788888999999999998
Q ss_pred eec
Q 042119 239 RSA 241 (286)
Q Consensus 239 r~~ 241 (286)
--+
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 754
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=9.4e-08 Score=83.28 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=59.2
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
..+.-.++.|+|+|||+ |.-++-.+- +.-.+|+|+|+||++++.+++++.+++ .++.|.++|+.++. ..||
T Consensus 40 ~~g~l~g~~V~DlG~GT-G~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~d 110 (198)
T COG2263 40 LRGDLEGKTVLDLGAGT-GILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFD 110 (198)
T ss_pred HcCCcCCCEEEEcCCCc-CHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---Cccc
Confidence 34567889999999997 555554443 334789999999999999999999854 68999999997644 4677
Q ss_pred eeehh
Q 042119 205 CIFLA 209 (286)
Q Consensus 205 ~V~~a 209 (286)
.|++.
T Consensus 111 tvimN 115 (198)
T COG2263 111 TVIMN 115 (198)
T ss_pred eEEEC
Confidence 77654
No 146
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.72 E-value=7.6e-09 Score=81.31 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=49.3
Q ss_pred EEeccCCChhhHHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhh
Q 042119 135 AFVGSGPMPLTSIIMAKHHLTST--HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAA 210 (286)
Q Consensus 135 L~IG~G~lp~tai~lA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aa 210 (286)
++||+. .|.|++++++...++. +++++|..+. .+.+++.+++.+ +.++++++.+|..+....+ ..||++|+++
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 589987 6889999988433443 7999999997 556677777778 7789999999998765544 4799999997
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-. ..+.-..-++.+.++|+|||++++.+
T Consensus 78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DH--SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 43 34566778999999999999999875
No 147
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=3.8e-08 Score=88.60 Aligned_cols=118 Identities=21% Similarity=0.286 Sum_probs=82.5
Q ss_pred hHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc
Q 042119 116 SKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI 193 (286)
Q Consensus 116 ~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~ 193 (286)
...|+..|....-+++.+||+||||. |-|..-+-+ ..++ ..|.++|-||.|+++-++...... +++.-.+-|+
T Consensus 57 L~~Efpel~~~~~~~~~~ilEvGCGv-GNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dl 131 (264)
T KOG2361|consen 57 LLREFPELLPVDEKSAETILEVGCGV-GNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDL 131 (264)
T ss_pred HHHhhHHhhCccccChhhheeeccCC-Ccccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceec
Confidence 44566666555555556999999995 777776666 3444 899999999999999998755433 5665555665
Q ss_pred cchh--h--cCCCccee---ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 194 MEVK--E--QLGEYDCI---FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 194 ~~~~--~--~l~~fD~V---~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..-. . ..+++|.+ |+-+.| +++.-..+++++.+++||||.|++|+
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 4311 1 22468865 332333 34556789999999999999999985
No 148
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.72 E-value=1.6e-07 Score=92.83 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=86.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC 205 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~ 205 (286)
.+.++.+|||+++||+|=|+...+. ....+.|+++|+++.+++..+++++++|. .++.+.+.|+..+...+ ..||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~-l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAAL-MNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHH-cCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCe
Confidence 5578999999999998887655443 33457999999999999999999999994 67899999987654333 36999
Q ss_pred eehhhh---ccC---ChhH---------------HHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAAL---VGM---SKEE---------------KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aal---vg~---~~~~---------------k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++++- -|| +++. -.++|.+..+.|||||+||+.+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 998762 233 1111 1579999999999999999964
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.72 E-value=6.1e-08 Score=85.28 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=79.9
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcceeehh
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYDCIFLA 209 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V~~a 209 (286)
-+++|||| .|--.+.+|+ ..|+..++|||+....++.|.+.+.+.|+ .++.++++|+..+.. +.+.+|-|++.
T Consensus 20 l~lEIG~G-~G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCG-KGEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-T-TSHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCC-CCHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 89999999 5777788888 58999999999999999999999999995 799999999988543 22468888765
Q ss_pred hhccCChhH-------HHHHHHHHHhhccCCcEEEEee
Q 042119 210 ALVGMSKEE-------KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 210 alvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.--.|++.. -.++++.+++.|+|||.|-+++
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 422332211 2468999999999999999987
No 150
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=1.6e-07 Score=82.09 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=78.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---C-Cc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---G-EY 203 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~-~f 203 (286)
..+.+|||++||++.++ +.+++ .|+ +|++||+|+.+++.++++++..+ +.++++++++|+.+....+ . .|
T Consensus 48 ~~g~~vLDLfaGsG~lg-lea~s---rga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLG-EEALS---RGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHH-HHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCc
Confidence 35789999999976555 44444 344 89999999999999999999999 6778999999996654322 2 38
Q ss_pred ceeehhhhccCChhHHHHHHHHHHh--hccCCcEEEEeecC
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRK--YMKDGGILLVRSAK 242 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~~ 242 (286)
|+||++---+. ....++++.+.. .+++||++++....
T Consensus 123 dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred eEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 99988743321 233455665544 68999999998654
No 151
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.71 E-value=8.8e-08 Score=83.66 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=82.4
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
.+++||||| .|+..+.+|= .+|..+|+-+|.....++.-+..++.+| + ++++++++.+.+ ...-..||+|+.-|+
T Consensus 50 ~~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 50 KKVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp SEEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred ceEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEeehh
Confidence 389999999 5999999998 6899999999999999999999999999 4 589999999987 333357999997665
Q ss_pred ccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
. +-..+++-..+.+++||.+++--+
T Consensus 125 ~-----~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 A-----PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp S-----SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred c-----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3 445788999999999998887643
No 152
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.70 E-value=4.1e-08 Score=84.07 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=57.6
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--C-cceeeh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--E-YDCIFL 208 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~-fD~V~~ 208 (286)
+.|+|+-|| .|-.++.+|+ ...+|++||+||..++.|+.+++..| ++++|+|+++|..++...+. . ||+||+
T Consensus 1 ~~vlD~fcG-~GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-T-TSHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccC-cCHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 368999999 5778899999 57899999999999999999999999 78999999999998766543 2 899997
Q ss_pred hh
Q 042119 209 AA 210 (286)
Q Consensus 209 aa 210 (286)
+-
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 65
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.68 E-value=1.2e-07 Score=82.72 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hh-hcCCCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VK-EQLGEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~-~~l~~fD~V 206 (286)
+++++|||||||++. .+..+++. .+..++|+|+++++++.|++ . +++++++|+.+ ++ ...+.||+|
T Consensus 12 ~~~~~iLDiGcG~G~-~~~~l~~~--~~~~~~giD~s~~~i~~a~~----~-----~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGE-LLALLRDE--KQVRGYGIEIDQDGVLACVA----R-----GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCH-HHHHHHhc--cCCcEEEEeCCHHHHHHHHH----c-----CCeEEEEEhhhcccccCCCCcCEE
Confidence 567899999999754 45667652 57889999999999998864 2 36889999865 22 233579999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccC
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKD 232 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~p 232 (286)
+....+. +..+..++++++.+.+++
T Consensus 80 i~~~~l~-~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQ-ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhH-cCcCHHHHHHHHHHhCCe
Confidence 9765442 235677889998877654
No 154
>PRK00536 speE spermidine synthase; Provisional
Probab=98.68 E-value=1.8e-07 Score=85.86 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=75.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhc-CCCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQ-LGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~-l~~fD~ 205 (286)
..|+|||.||+|- |.++.-+.|+ + .+|+-+|||++.++.|++.+-.. +.-..|++++.. . ... -+.||+
T Consensus 71 ~~pk~VLIiGGGD-Gg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~~~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFD-LELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---LDLDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCc-hHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---hhccCCcCCE
Confidence 6789999999996 6677888872 4 49999999999999999953321 212468888862 2 222 257999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
|+++++- + .++++.+.+.|+|||++++.+.
T Consensus 143 IIvDs~~-----~-~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 143 IICLQEP-----D-IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEEcCCC-----C-hHHHHHHHHhcCCCcEEEECCC
Confidence 9999763 2 3688999999999999999864
No 155
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.64 E-value=1.3e-07 Score=89.34 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=77.7
Q ss_pred HhhhHHHHHHhcCCCCcccccccC-cCccchhhhhHHHHHHHH--hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEE
Q 042119 83 GLLELEFATFLTKIPQPLNNLSLF-PYYGNYVKLSKLEYTILS--ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHF 159 (286)
Q Consensus 83 ~~lE~~~A~~l~~~~~p~~~L~~f-py~~ny~~l~~~E~~~l~--~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V 159 (286)
++|..+|.-..- +.|-..|-+- |---||..-+...+.... ......+.++||||||++++..++.++ .++++|
T Consensus 66 alL~~~ygl~~w--dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~--~~~~~~ 141 (321)
T PRK11727 66 ALLAHFYGVAHW--DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH--EYGWRF 141 (321)
T ss_pred HHHHHhcCCCcc--cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh--CCCCEE
Confidence 344445443322 3444444432 544566654433222110 011135689999999987676665555 579999
Q ss_pred EEEeCChHHHHHHHHHHHhc-CCCCCCeEEEE-ccccchhhc----CCCcceeehh
Q 042119 160 DNFDIDEAANDVARSIVASD-AEFEGRMKFLT-RDIMEVKEQ----LGEYDCIFLA 209 (286)
Q Consensus 160 ~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~-~D~~~~~~~----l~~fD~V~~a 209 (286)
+|+|+|+.+++.|+++++.. + +.++|++.. .|..++... .+.||+|+..
T Consensus 142 ~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 142 VGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEEEEeC
Confidence 99999999999999999998 7 788999964 444443332 2469999743
No 156
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.63 E-value=4e-07 Score=80.56 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119 118 LEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK 197 (286)
Q Consensus 118 ~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~ 197 (286)
...+.|.++....+.+||+||||+ |.=+..+|+ ++|..+..--|.++....--+..++..| +..--.-+.-|+.+-.
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGt-GqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGT-GQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPP 89 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCc-cHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCC
Confidence 344555555544555799999996 889999999 6999999999999999877777777777 4333334455665543
Q ss_pred hcCC--------Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 198 EQLG--------EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 198 ~~l~--------~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.++. .||.||.+.++ -|+-+.-..+++...+.|+|||.|++-.
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 4333 79999988765 4566777889999999999999999843
No 157
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.60 E-value=3.1e-07 Score=81.27 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch
Q 042119 117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV 196 (286)
Q Consensus 117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~ 196 (286)
..|..-+.+. ..++..|+|.-||-+ .-++.+|+ +..+..|+++|++|.+++..++.++..+ +.++|..+.+|+.++
T Consensus 89 ~~Er~Ri~~~-v~~~e~VlD~faGIG-~f~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 89 STERRRIANL-VKPGEVVLDMFAGIG-PFSLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREF 164 (200)
T ss_dssp HHHHHHHHTC---TT-EEEETT-TTT-TTHHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG-
T ss_pred HHHHHHHHhc-CCcceEEEEccCCcc-HHHHHHhh-hcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHh
Confidence 3455555443 588999999999954 45577787 4678899999999999999999999999 789999999999988
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
.. ...||.|++.-. +.-.+++....+.+++||++-
T Consensus 165 ~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 165 LP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred cC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 76 457999887532 122368999999999999874
No 158
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.59 E-value=3.7e-07 Score=88.22 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=86.8
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----CCcc
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL----GEYD 204 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l----~~fD 204 (286)
.|++||++=|=++|+| +..|. -|| +||+||+|..++++|+++++-.|.-.+++.|+++|+.+..... ..||
T Consensus 217 ~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 4999999999876655 55554 788 9999999999999999999999943578999999998876543 2699
Q ss_pred eeehhh--hc-c--CC---hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 205 CIFLAA--LV-G--MS---KEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 205 ~V~~aa--lv-g--~~---~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
+|+++- +. + +. ..+..+++....+.|+|||++++-+-+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999873 22 1 11 245678899999999999999998743
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.57 E-value=4.2e-07 Score=81.87 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=88.4
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCcceeeh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEYDCIFL 208 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~fD~V~~ 208 (286)
.-+++|||| .|-..+.+|+ ..|...++|||+....+..|.+.+.+.|+ ++++++++|+.++...+ ++.|-|++
T Consensus 50 pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELGL--KNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 589999999 6888889998 58999999999999999999999999993 49999999999887644 36788877
Q ss_pred hhhccCChhH-------HHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALVGMSKEE-------KLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
..--.|++.. ...+++.+++.|+|||.|-+.+-
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 6443554432 24689999999999999999873
No 160
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.56 E-value=4.7e-07 Score=84.51 Aligned_cols=78 Identities=12% Similarity=0.218 Sum_probs=62.6
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
...+.++.+|++||||++.+|. .+++ .+.+|+++|+|+.+++.+++.+...| ..++++++++|+.+. ++..||
T Consensus 31 ~~~~~~~~~VLEIG~G~G~LT~-~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~--~~~~~d 103 (294)
T PTZ00338 31 KAAIKPTDTVLEIGPGTGNLTE-KLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKT--EFPYFD 103 (294)
T ss_pred hcCCCCcCEEEEecCchHHHHH-HHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhh--cccccC
Confidence 3456788999999999866664 4555 46789999999999999999998877 457899999999764 345799
Q ss_pred eeehh
Q 042119 205 CIFLA 209 (286)
Q Consensus 205 ~V~~a 209 (286)
.|+..
T Consensus 104 ~VvaN 108 (294)
T PTZ00338 104 VCVAN 108 (294)
T ss_pred EEEec
Confidence 87743
No 161
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=90.30 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhH
Q 042119 67 VQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTS 146 (286)
Q Consensus 67 ~~~l~~~l~~l~~~~e~~lE~~~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~ta 146 (286)
...+.+.+-++++..+...|..|...++.++-| ..-.+....++.|--...+.+..++.+++++||| +|-.+
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~-------e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~ 125 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIP-------EGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS 125 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCcc-------chhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence 335567788888888999999999999876553 2323444444444444445566888899999999 67777
Q ss_pred HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHH
Q 042119 147 IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHI 226 (286)
Q Consensus 147 i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l 226 (286)
..++. +.+++++|+|.++..+..+.......+ +.++-.|+.+|..+.+++...||.|.+.-. +.+.+....+++++
T Consensus 126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~-~~~~~~~~~~y~Ei 201 (364)
T KOG1269|consen 126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEV-VCHAPDLEKVYAEI 201 (364)
T ss_pred HHHHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEee-cccCCcHHHHHHHH
Confidence 88887 688999999999999999999999888 788889999999998888889999974322 33457888899999
Q ss_pred HhhccCCcEEEEee
Q 042119 227 RKYMKDGGILLVRS 240 (286)
Q Consensus 227 ~~~l~pgg~lv~r~ 240 (286)
.++++|||+.++-.
T Consensus 202 ~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 202 YRVLKPGGLFIVKE 215 (364)
T ss_pred hcccCCCceEEeHH
Confidence 99999999999853
No 162
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.53 E-value=5.8e-07 Score=88.50 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=85.4
Q ss_pred cCccchhhhhHHHHHHHHhcCCC----CCCEEEEeccCCChhhHHHHHh--hcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119 107 PYYGNYVKLSKLEYTILSENGVV----QPKKVAFVGSGPMPLTSIIMAK--HHLTSTHFDNFDIDEAANDVARSIVASDA 180 (286)
Q Consensus 107 py~~ny~~l~~~E~~~l~~~~~~----~~~~VL~IG~G~lp~tai~lA~--~~~~g~~V~~iDid~~ai~~Ar~~~~~~g 180 (286)
-.|+.|++-+.. .+..+.... .+..|++||||.+|++...+.. +.....+|.+|+.++.|+...++++++.|
T Consensus 161 vKY~~Ye~AI~~--al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~ 238 (448)
T PF05185_consen 161 VKYDQYERAIEE--ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG 238 (448)
T ss_dssp HHHHHHHHHHHH--HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC
Confidence 345667666533 211122211 2578999999999997554432 12235799999999999999999888899
Q ss_pred CCCCCeEEEEccccchhhcCCCcceeehhhhccC--ChhHHHHHHHHHHhhccCCcEEEE
Q 042119 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGM--SKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 181 ~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~--~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
++++|+++.+|+.++..+. ..|+|+-. +.|. +-|--.++|....|.|||||+++=
T Consensus 239 -w~~~V~vi~~d~r~v~lpe-kvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 239 -WGDKVTVIHGDMREVELPE-KVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp -TTTTEEEEES-TTTSCHSS--EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred -CCCeEEEEeCcccCCCCCC-ceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 8999999999998876653 79998632 2221 223444689999999999998764
No 163
>PRK04148 hypothetical protein; Provisional
Probab=98.53 E-value=1.5e-06 Score=72.06 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=69.3
Q ss_pred CCCCEEEEeccCCChh-hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCccee
Q 042119 129 VQPKKVAFVGSGPMPL-TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~-tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V 206 (286)
..+++|++|||| .|. .|..|++ .|..|+++|++|++++.|++. + ++++++|+.+-...+ .++|+|
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCHHHHhcCCEE
Confidence 456899999999 554 7778887 799999999999999988775 3 589999997755554 579999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.... +++-..-+.++++.+ |+-++++.
T Consensus 82 ysirp----p~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 82 YSIRP----PRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred EEeCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 95432 245555666666654 46666664
No 164
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.52 E-value=5.3e-07 Score=85.52 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------CCCCeEEEEccccchh--h-
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--------FEGRMKFLTRDIMEVK--E- 198 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--------l~~~i~f~~~D~~~~~--~- 198 (286)
++.+|||+|||-+|-.-=|... .-..++|+||++++++.|++..+.... ..-...|+++|..... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 7899999999976655444433 558899999999999999999833210 1124578888875321 1
Q ss_pred -cC--CCcceeeh-hhhc-cCChhHHHH-HHHHHHhhccCCcEEEEeecC
Q 042119 199 -QL--GEYDCIFL-AALV-GMSKEEKLT-ILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 199 -~l--~~fD~V~~-aalv-g~~~~~k~~-vl~~l~~~l~pgg~lv~r~~~ 242 (286)
.. ..||+|=. .++. ....+.+.+ +|..+.+.|+|||+++....+
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 11 37999832 2232 333355555 999999999999999987643
No 165
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.50 E-value=9.5e-07 Score=77.35 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=68.8
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcce
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDC 205 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~ 205 (286)
+.+++||||+|||-+-+- ..|.+ ..+++..|+|+|++.+..|.+. | ++.+++|+.+-.. +.+.||.
T Consensus 11 I~pgsrVLDLGCGdG~LL-~~L~~--~k~v~g~GvEid~~~v~~cv~r----G-----v~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELL-AYLKD--EKQVDGYGVEIDPDNVAACVAR----G-----VSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHH-HHHHH--hcCCeEEEEecCHHHHHHHHHc----C-----CCEEECCHHHhHhhCCCCCccE
Confidence 478999999999975444 33433 3799999999999998777653 4 6789999876443 3357999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
|+++-.+.. .....++|+++.|+ |...++.
T Consensus 79 VIlsqtLQ~-~~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQA-VRRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHh-HhHHHHHHHHHHHh---cCeEEEE
Confidence 998866522 13455789998766 4444443
No 166
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.50 E-value=5.1e-07 Score=86.56 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=69.6
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----------
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---------- 200 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---------- 200 (286)
+.+|||++||.+.+ ++.+|+ ...+|++||+|++|++.|+++++..| + ++++|+++|+.+....+
T Consensus 207 ~~~vLDl~~G~G~~-sl~la~---~~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNF-TLALAR---NFRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHH-HHHHHh---hCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence 36899999997545 568887 34689999999999999999999999 4 58999999998754322
Q ss_pred -----C-Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 201 -----G-EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 201 -----~-~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+ .||+||++--= |+ ..++++.+.+ |++++.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYIS 319 (362)
T ss_pred cccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEE
Confidence 1 48999988321 21 2345555544 55554443
No 167
>PHA03411 putative methyltransferase; Provisional
Probab=98.49 E-value=6.6e-07 Score=82.63 Aligned_cols=101 Identities=10% Similarity=0.164 Sum_probs=70.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.+|||+|||.+.++ +.+++ ..++.+|+++|+|+++++.|++. . .+++++++|+.+...+ ..||+|+.
T Consensus 63 ~~~grVLDLGcGsGils-l~la~-r~~~~~V~gVDisp~al~~Ar~n---~----~~v~~v~~D~~e~~~~-~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLS-FCMLH-RCKPEKIVCVELNPEFARIGKRL---L----PEAEWITSDVFEFESN-EKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCCCCHHH-HHHHH-hCCCCEEEEEECCHHHHHHHHHh---C----cCCEEEECchhhhccc-CCCcEEEE
Confidence 34679999999975554 44554 24578999999999999999985 2 3689999999875532 47999986
Q ss_pred hh-hccCChhHH------------------HHHHHHHHhhccCCcEEEEe
Q 042119 209 AA-LVGMSKEEK------------------LTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aa-lvg~~~~~k------------------~~vl~~l~~~l~pgg~lv~r 239 (286)
.- +......+. .+.+..+...|+|+|.+.+.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 43 211111111 24566777888888876554
No 168
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=7.1e-07 Score=79.70 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=83.0
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
+++++|||||+ |+..+.+|= ..|+.+||-+|.....++.=+++.+.+|+ ++++++++.+.++......||+|..-|
T Consensus 68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHhhcccccccCcEEEeeh
Confidence 68999999995 999999985 57999999999999999999999999995 789999999988765432299998666
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
+- +-..+.+-....+++||.++.
T Consensus 144 va-----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 144 VA-----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cc-----chHHHHHHHHHhcccCCcchh
Confidence 53 444677888899999887653
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.45 E-value=1.2e-06 Score=84.59 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
+.+|||++||. |.-++.+|+. ....+|+++|+++++++.++++++..| + +++++.++|+.++......||+|+++-
T Consensus 58 ~~~vLDl~aGs-G~~~l~~a~~-~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSAS-GIRGIRYALE-TGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcc-cHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 46999999996 5555667662 334589999999999999999999988 4 467899999977554234699999886
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
. |. ...+++...+.+++||++.+..
T Consensus 134 ~-Gs----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GS----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence 4 42 2458888677789999998864
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.45 E-value=1.1e-06 Score=80.22 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
....++++|+|||||++.+ +..+++ .+.+|+++|+|+.+++.+++.+... ++++++++|+.+++ +..||.
T Consensus 25 ~~~~~~~~VLEIG~G~G~l-t~~L~~---~~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~~~~--~~~~d~ 94 (258)
T PRK14896 25 AEDTDGDPVLEIGPGKGAL-TDELAK---RAKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDALKVD--LPEFNK 94 (258)
T ss_pred cCCCCcCeEEEEeCccCHH-HHHHHH---hCCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccccCC--chhceE
Confidence 3557789999999997554 466776 3579999999999999999887542 57999999997754 356888
Q ss_pred eeh
Q 042119 206 IFL 208 (286)
Q Consensus 206 V~~ 208 (286)
|+.
T Consensus 95 Vv~ 97 (258)
T PRK14896 95 VVS 97 (258)
T ss_pred EEE
Confidence 764
No 171
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.44 E-value=7.3e-07 Score=82.98 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=82.9
Q ss_pred CCCEEEEeccCCC--hhhHHHHHhhcCC----CcEEEEEeCChHHHHHHHHHH------------------Hhc-----C
Q 042119 130 QPKKVAFVGSGPM--PLTSIIMAKHHLT----STHFDNFDIDEAANDVARSIV------------------ASD-----A 180 (286)
Q Consensus 130 ~~~~VL~IG~G~l--p~tai~lA~~~~~----g~~V~~iDid~~ai~~Ar~~~------------------~~~-----g 180 (286)
.+-||.-.||+++ |+|..++.....+ +.+|+|.|||+.+++.|++-+ .+. |
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3479999999864 4444443332221 478999999999999999752 110 1
Q ss_pred ------CCCCCeEEEEccccchhhc-CCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119 181 ------EFEGRMKFLTRDIMEVKEQ-LGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 181 ------~l~~~i~f~~~D~~~~~~~-l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
.+.++|+|...|+.+.+.+ .+.||+|+.-. ++..+.+.+.++++.+++.|+|||.|++-....
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 0347889999999764332 46899999643 446688899999999999999999998865443
No 172
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.44 E-value=1e-06 Score=84.27 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=69.6
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc------C---C
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ------L---G 201 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~------l---~ 201 (286)
+.+|||+|||. |.-++.+|+. ..+|+++|++++|++.|+++++..| + ++++|+++|+.+.... + +
T Consensus 198 ~~~vlDl~~G~-G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGN-GNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccc-cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 35799999996 5556788882 3599999999999999999999998 4 5799999999875542 1 1
Q ss_pred -------Ccceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 202 -------EYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 202 -------~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.||+||++-- .|+ ..++++.+.+ |++++.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEE
Confidence 3899998732 122 2245555544 65555553
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.43 E-value=1.7e-06 Score=74.61 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=71.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEEEccccchh----hcCCCc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA-EFEGRMKFLTRDIMEVK----EQLGEY 203 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g-~l~~~i~f~~~D~~~~~----~~l~~f 203 (286)
..+++||++||| .|+.++.+|+ ...+.+|+.-|.++ .++..+.+++..+ ....++++..-|-.+.. .+...|
T Consensus 44 ~~~~~VLELGaG-~Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAG-TGLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-T-TSHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCc-cchhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 678999999999 5999999998 34688999999999 9999999998754 12467888777653311 122479
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+.+=.+ ...+.-..++..+.+.++|++.+++-.
T Consensus 121 D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999865443 345677789999999999999876654
No 174
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=79.42 Aligned_cols=109 Identities=19% Similarity=0.316 Sum_probs=74.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC------------------------
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG------------------------ 184 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~------------------------ 184 (286)
-.+..+|||||-. |.-++.+|+ .+..-.|.|+|||+..++.||+.++..-....
T Consensus 57 f~~~~~LDIGCNs-G~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNS-GFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCc-chhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4678999999985 777889999 46556799999999999999998765321111
Q ss_pred ---------CeEEEEcccc----chh-hcCCCcceeehhhh---c--cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 185 ---------RMKFLTRDIM----EVK-EQLGEYDCIFLAAL---V--GMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 185 ---------~i~f~~~D~~----~~~-~~l~~fD~V~~aal---v--g~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
++.|...+.. ++. .....||+|+.-+. | -|..+--.+++.++.+++.|||+||+-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1112111110 011 12247999975442 2 234456678999999999999999994
No 175
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.42 E-value=6.2e-06 Score=76.41 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=91.7
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119 113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLT 190 (286)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~ 190 (286)
..+++..+..|... ..+-||++|-||++-+-.=.+++ .+. .+|.-.|.||..++.++++++..| +++-++|++
T Consensus 120 ~~~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~ 194 (311)
T PF12147_consen 120 EELIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQ 194 (311)
T ss_pred HHHHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEe
Confidence 34444444444322 47789999999987665555555 454 799999999999999999999999 787779999
Q ss_pred ccccchhh--cCC-CcceeehhhhccC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 191 RDIMEVKE--QLG-EYDCIFLAALVGM--SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 191 ~D~~~~~~--~l~-~fD~V~~aalvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+.+... .+. ..|+++++.+.+. +-+.-.+.+..+.+.+.|||.+|+..
T Consensus 195 ~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 195 GDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred cCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99977422 222 4799998877633 21223457899999999999999976
No 176
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.40 E-value=2e-06 Score=75.91 Aligned_cols=117 Identities=17% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeccCCC--hhhHHHHHhhc---CC--CcEEEEEeCChHHHHHHHHHH--------------H-hc----C
Q 042119 127 GVVQPKKVAFVGSGPM--PLTSIIMAKHH---LT--STHFDNFDIDEAANDVARSIV--------------A-SD----A 180 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~l--p~tai~lA~~~---~~--g~~V~~iDid~~ai~~Ar~~~--------------~-~~----g 180 (286)
....+-||.-.||+++ |+|..++.... .. ..+|+|.|+|+.+++.|++-+ + -. |
T Consensus 28 ~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 28 RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDG 107 (196)
T ss_dssp CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence 3356789999999974 34444444321 12 479999999999999998521 0 01 1
Q ss_pred C-------CCCCeEEEEccccchhhcCCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119 181 E-------FEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 181 ~-------l~~~i~f~~~D~~~~~~~l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
. +.++|+|...|+.+.....+.||+||.-. ++-++.+.+.++++.+++.|+|||.|++-.+..
T Consensus 108 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 108 GGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp CCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred CceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 0 24689999999988334456899999654 447788999999999999999999999976543
No 177
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.39 E-value=1.5e-06 Score=75.86 Aligned_cols=109 Identities=13% Similarity=0.217 Sum_probs=80.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD 204 (286)
-.+.++||+=||++.++...+.+ .-.+|+.||.|+.+++..+++++.++ ..++++.+++|+...... -..||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhhcccCCCce
Confidence 46899999988877777666665 45699999999999999999999999 678899999998765432 24799
Q ss_pred eeehhhhccCChhH-HHHHHHHHH--hhccCCcEEEEeecCc
Q 042119 205 CIFLAALVGMSKEE-KLTILGHIR--KYMKDGGILLVRSAKG 243 (286)
Q Consensus 205 ~V~~aalvg~~~~~-k~~vl~~l~--~~l~pgg~lv~r~~~g 243 (286)
+||++---. ... ..++++.+. ..|+++|++++.....
T Consensus 117 iIflDPPY~--~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYA--KGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STT--SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcc--cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 999985221 233 367888887 7899999999987543
No 178
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.4e-06 Score=74.72 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=82.6
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcC--------CCCCCeEEEEccccchhh
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDA--------EFEGRMKFLTRDIMEVKE 198 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g--------~l~~~i~f~~~D~~~~~~ 198 (286)
..++-+.|+||||++-+| -++|+- ..+|..++|||.-|+-++.+++.+++.- .-..+..|++||....-.
T Consensus 80 L~pG~s~LdvGsGSGYLt-~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLT-ACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHH-HHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 589999999999975555 456642 2356666999999999999999987643 113578999999987766
Q ss_pred cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee-cCcceeee
Q 042119 199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS-AKGARAFL 248 (286)
Q Consensus 199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~-~~g~r~~l 248 (286)
+-..||.|++-|-+. ++-+++...|+|||.+++-- ..+..+.+
T Consensus 159 e~a~YDaIhvGAaa~-------~~pq~l~dqL~~gGrllip~~~~~~~q~~ 202 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAAS-------ELPQELLDQLKPGGRLLIPVGQDGGTQYL 202 (237)
T ss_pred ccCCcceEEEccCcc-------ccHHHHHHhhccCCeEEEeecccCceeEE
Confidence 667899999876441 34556777788988877754 44555543
No 179
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.36 E-value=1.7e-06 Score=79.61 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=51.1
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE 198 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~ 198 (286)
.....++.+|||||||++.+| ..+++ .+.+|+++|+|+++++.+++.+.. ++++++++|+.++..
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt-~~L~~---~~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALT-EPLLE---RAAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDL 101 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHH-HHHHH---hCCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCH
Confidence 345678899999999985555 56666 245999999999999999986532 579999999987643
No 180
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.35 E-value=5.4e-06 Score=73.63 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=75.9
Q ss_pred EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhcc
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVG 213 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg 213 (286)
|+||||-. |+-++.|.++ ..-.++++.|+++.-++.|++.+++.| +.++|++..+|..+...+-...|.|++|.
T Consensus 1 vaDIGtDH-gyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAG--- 74 (205)
T PF04816_consen 1 VADIGTDH-GYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAG--- 74 (205)
T ss_dssp EEEET-ST-THHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEE---
T ss_pred Cceeccch-hHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEec---
Confidence 78999996 7777888872 445689999999999999999999999 89999999999977554433489998873
Q ss_pred CChhHHHHHHHHHHhhccCCcEEEEee---cCcceeeecc
Q 042119 214 MSKEEKLTILGHIRKYMKDGGILLVRS---AKGARAFLYP 250 (286)
Q Consensus 214 ~~~~~k~~vl~~l~~~l~pgg~lv~r~---~~g~r~~lyp 250 (286)
|--.--.++|+.....++....+|+-- ..-+|.+|+-
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~ 114 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE 114 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence 333556678888877776655666653 2335555543
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.35 E-value=5.5e-06 Score=75.31 Aligned_cols=73 Identities=19% Similarity=0.334 Sum_probs=55.1
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
.+......++++|||||||++.+| ..+++ .+.+|+++|+|+++++.+++.+.. ..+++++++|+.+.+.+
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt-~~L~~---~~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALT-EPLLK---RAKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHH-HHHHH---hCCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--
Confidence 333445678899999999986665 45555 335799999999999999987643 25899999999776543
Q ss_pred Ccc
Q 042119 202 EYD 204 (286)
Q Consensus 202 ~fD 204 (286)
.||
T Consensus 91 ~~d 93 (253)
T TIGR00755 91 DFP 93 (253)
T ss_pred HcC
Confidence 466
No 182
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.34 E-value=3.7e-06 Score=75.13 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=71.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l~~fD~V~ 207 (286)
..+.-|||||||+ |+++-.+.. +|...+|+||||.|++.|.+. .-.| .++.+|. .-+++..+.||-|+
T Consensus 49 ~~~~~iLDIGCGs-GLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~-e~eg------dlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 49 PKSGLILDIGCGS-GLSGSVLSD---SGHQWIGVDISPSMLEQAVER-ELEG------DLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCCcEEEEeccCC-Ccchheecc---CCceEEeecCCHHHHHHHHHh-hhhc------CeeeeecCCCCCCCCCccceEE
Confidence 3578999999995 899998887 899999999999999999962 1124 2444443 23555556799775
Q ss_pred hhhhccC----------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGM----------SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~----------~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.-+.|-| +...-..++..+...|++|++-++..
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 3222211 22223567888999999999988864
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.34 E-value=3.5e-06 Score=78.38 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhc---CCCc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQ---LGEY 203 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~---l~~f 203 (286)
..+++||++=|=++|+|... |+ .|+ +|++||.|..++++|+++++..| +. ++++|+++|+.+.... -+.|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~A-a~---gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAA-AA---GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHH-HH---TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHH-HH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCC
Confidence 46899999999877777543 33 566 79999999999999999999888 54 7899999999875432 2479
Q ss_pred ceeehhh--hc-cC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAA--LV-GM--SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aa--lv-g~--~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+++- +. +- -..++.+++..+.+.++|||.|+.-+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9999873 22 11 12456789999999999999988765
No 184
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.33 E-value=2.8e-07 Score=82.61 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=96.7
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE 202 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~ 202 (286)
+....+=+++|++|||+ |++...+-. .-.+.+|||||..|++.|.+. |+. + +..++|+..+..+. ..
T Consensus 120 ~~~~g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK----g~Y-D--~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 120 KADLGPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHEK----GLY-D--TLYVAEAVLFLEDLTQER 188 (287)
T ss_pred hccCCccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHhc----cch-H--HHHHHHHHHHhhhccCCc
Confidence 34445568999999995 888887765 557899999999999999874 211 1 34456665555423 46
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec----CcceeeecccC---Ccc-------cccCcEEEEEecC
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA----KGARAFLYPVV---VEH-------DLLDFEVLSAVHP 268 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~----~g~r~~lyp~v---~~~-------~l~gf~~~~~~~P 268 (286)
||+|. ++-|-+....-..++..+...|+|||.+..... +| +-.+-|.. +.+ +-.||+++...+-
T Consensus 189 ~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 189 FDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred ccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-CeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 99986 344444456778899999999999999999862 32 12333321 111 1269998754431
Q ss_pred ------cccceeeeEEEeec
Q 042119 269 ------NDDVINSVVLVRNS 282 (286)
Q Consensus 269 ------~~~vinsvi~~r~~ 282 (286)
..+|---.+++||+
T Consensus 267 tiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 267 TIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred cchhhcCCCCCCceEEEecC
Confidence 22344457888885
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.33 E-value=5.2e-06 Score=71.96 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=76.6
Q ss_pred HHhcCCCCCCEEEEeccCCChh--hHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119 123 LSENGVVQPKKVAFVGSGPMPL--TSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~--tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~ 195 (286)
+..++..++..|+|--||.+.+ -+..++....+ ..++.|+|+|+++++.|+++++..| +...|.|..+|+.+
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE 99 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh
Confidence 3344567889999987775332 23333321110 1238999999999999999999999 78899999999999
Q ss_pred hhhcCCCcceeehhhhccCC-------hhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119 196 VKEQLGEYDCIFLAALVGMS-------KEEKLTILGHIRKYMKDGGILLVRSAKGA 244 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~~g~ 244 (286)
++...+.+|+|+.+---|.- ..-+.++++++.+++++..++++.....+
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~ 155 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL 155 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 88544579999876432221 12245678888999999666666654443
No 186
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.32 E-value=2.1e-06 Score=78.00 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHhhcCCcccccccCchhHHHHHHHHHHHHHHHhHhhhH--HHHHHhcCCCCcccccccCcCccchhhh
Q 042119 38 SKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLEL--EFATFLTKIPQPLNNLSLFPYYGNYVKL 115 (286)
Q Consensus 38 ~~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~--~~A~~l~~~~~p~~~L~~fpy~~ny~~l 115 (286)
-+.+++...+|-..|---.+ ..+..+++..++++ +.+.+--|. .|.+.+++...+. -.+++++..+
T Consensus 28 k~a~k~~k~~LH~i~gay~~-----~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~HaST-----~ERl~~Ld~f 95 (251)
T PF07091_consen 28 KEAVKATKRRLHQIFGAYLE-----GRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHAST-----RERLPNLDEF 95 (251)
T ss_dssp HHHHHHHHHHHHCCTCCCSS-----S---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSHHH-----HCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhccch-----hhhhhhHHHH
Confidence 34578888888777754321 12334455556655 222222222 3334454443332 2556677777
Q ss_pred hHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119 116 SKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195 (286)
Q Consensus 116 ~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~ 195 (286)
....++ ...++.+|+|||||.-|++..++.. .+++.++|+|||..+++..++.+..+| -+.++...|...
T Consensus 96 Y~~if~-----~~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~---~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 96 YDEIFG-----RIPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLG---VPHDARVRDLLS 165 (251)
T ss_dssp HHHHCC-----CS---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTT
T ss_pred HHHHHh-----cCCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhC---CCcceeEeeeec
Confidence 776654 3366999999999999999999986 589999999999999999999999988 367888888854
Q ss_pred hhhcCCCcceeehhhh
Q 042119 196 VKEQLGEYDCIFLAAL 211 (286)
Q Consensus 196 ~~~~l~~fD~V~~aal 211 (286)
-+.. ...|+.++-=+
T Consensus 166 ~~~~-~~~DlaLllK~ 180 (251)
T PF07091_consen 166 DPPK-EPADLALLLKT 180 (251)
T ss_dssp SHTT-SEESEEEEET-
T ss_pred cCCC-CCcchhhHHHH
Confidence 3221 24788765443
No 187
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.31 E-value=6.7e-07 Score=80.37 Aligned_cols=136 Identities=24% Similarity=0.259 Sum_probs=94.4
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Cc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~f 203 (286)
.++.+.+|||.-.| +|+||+.-++ .|+ +|..|+.||..+++|.-+==+.++.+..|+++.||+.++..++. +|
T Consensus 131 ~~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 131 KVKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred ccccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 45679999999888 8999999888 788 99999999999998876532333234578999999999877664 69
Q ss_pred ceeehhh----hccCChhH-HHHHHHHHHhhccCCcEEEEeecC-ccee-eecccCCcc-cc--cCcEEEEEecCc
Q 042119 204 DCIFLAA----LVGMSKEE-KLTILGHIRKYMKDGGILLVRSAK-GARA-FLYPVVVEH-DL--LDFEVLSAVHPN 269 (286)
Q Consensus 204 D~V~~aa----lvg~~~~~-k~~vl~~l~~~l~pgg~lv~r~~~-g~r~-~lyp~v~~~-~l--~gf~~~~~~~P~ 269 (286)
|+|+-+- +.| +- -.++..+++|.|+|||.+.=-.++ |-|- -+.++-... .| .||+++....-.
T Consensus 207 DaIiHDPPRfS~Ag---eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 207 DAIIHDPPRFSLAG---ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred ceEeeCCCccchhh---hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhc
Confidence 9987542 112 22 257899999999999987654332 2111 111111111 12 499987666544
No 188
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.29 E-value=3.4e-06 Score=76.06 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=58.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEcccc-----chhhcCCC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLTRDIM-----EVKEQLGE 202 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~~D~~-----~~~~~l~~ 202 (286)
..+++||||||||+++| .++++ ....+|+++|+++.++.. ++ +.. .++ .+...|+. ++..++..
T Consensus 74 ~~~~~vlDiG~gtG~~t-~~l~~--~ga~~v~avD~~~~~l~~--~l-~~~----~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFT-DCALQ--KGAKEVYGVDVGYNQLAE--KL-RQD----ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHH-HHHHH--cCCCEEEEEeCCHHHHHH--HH-hcC----CCeeEeecCCcccCCHhHcCCCcee
Confidence 57789999999997776 45666 134689999999988766 21 111 122 23333333 23334446
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
||++|.+.. .++..+.+.|+| |.+++
T Consensus 144 ~DvsfiS~~---------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 144 FDVSFISLI---------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeEEEeehH---------hHHHHHHHHhCc-CeEEE
Confidence 888886532 268899999999 65544
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.29 E-value=2.5e-06 Score=79.70 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----CC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL----GE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l----~~ 202 (286)
.+.++..++|.+||.+|.|...+.. ..++++|+|+|+||+|++.|++.+.. . ++++++++|..++...+ ..
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~-~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~~~ 90 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILER-LGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGLGK 90 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHh-CCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCCCc
Confidence 4577889999999987777655543 23468999999999999999998765 3 68999999998765433 26
Q ss_pred cceeehhhhc
Q 042119 203 YDCIFLAALV 212 (286)
Q Consensus 203 fD~V~~aalv 212 (286)
+|.|+++-.+
T Consensus 91 vDgIl~DLGv 100 (296)
T PRK00050 91 VDGILLDLGV 100 (296)
T ss_pred cCEEEECCCc
Confidence 9999887655
No 190
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.27 E-value=4e-06 Score=83.68 Aligned_cols=102 Identities=26% Similarity=0.298 Sum_probs=73.7
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-----------ch
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-----------EV 196 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-----------~~ 196 (286)
..+|.+|+.+|+|+.|+.++..|+. .|++|+++|.+++..+.+++ +|. +|.+-|.. +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aes----lGA-----~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVES----MGA-----EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-----eEEEeccccccccccchhhhc
Confidence 4689999999999999999999994 78999999999999988887 351 22211110 01
Q ss_pred ------------hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 197 ------------KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 197 ------------~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
....+++|+|+.++.+...+.+ .-+.++..+.|||||+++.-..
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP-~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP-KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCc-chHHHHHHHhcCCCCEEEEEcc
Confidence 1112469999998876221122 2345999999999999988754
No 191
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.6e-05 Score=76.22 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=85.4
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Cc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~f 203 (286)
.+.++.+|||.-++|+|=|+...+.-...|..|+++|+|+..+..-+++++++| + .++...+.|....+.... .|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~-~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-V-RNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CceEEEecccccccccccccCcC
Confidence 468999999999999998876554411235778999999999999999999999 4 458888888865544332 39
Q ss_pred ceeehhhh---ccC---Ch---------------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAAL---VGM---SK---------------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aal---vg~---~~---------------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|.|++++- .|+ ++ .--.++|++..+.+||||+|++.+
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99998761 121 11 113479999999999999999975
No 192
>PHA03412 putative methyltransferase; Provisional
Probab=98.24 E-value=7.6e-06 Score=74.11 Aligned_cols=99 Identities=10% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCCEEEEeccCCChhhHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHH--LTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
.+.+|||+|||+ |.-++.++++. .+..+|+++|+|+.|++.|++++ .++.++++|+.+... .+.||+|+
T Consensus 49 ~~grVLDlG~GS-G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGI-GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChH-HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEE
Confidence 367999999996 55566666521 14679999999999999999863 247899999976443 24799996
Q ss_pred hhhh-c--cC--------ChhHHHHHHHHHHhhccCCcEEEE
Q 042119 208 LAAL-V--GM--------SKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 208 ~aal-v--g~--------~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
..-- . .. ....-.++++...+.++||+. |+
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 4310 0 00 012234588888887776665 44
No 193
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.2e-06 Score=73.49 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
++.-.+++++++|||. |+-++..+- +..-.|.|+||||+|++.+++++..+- -++++.++|+.+.....+-||.
T Consensus 44 ygdiEgkkl~DLgcgc-GmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfE---vqidlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGC-GMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFE---VQIDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred hccccCcchhhhcCch-hhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhh---hhhheeeeeccchhccCCeEee
Confidence 3446789999999994 665544442 456679999999999999999999876 3679999999887666567998
Q ss_pred eehhh
Q 042119 206 IFLAA 210 (286)
Q Consensus 206 V~~aa 210 (286)
++..-
T Consensus 118 aviNp 122 (185)
T KOG3420|consen 118 AVINP 122 (185)
T ss_pred EEecC
Confidence 76553
No 194
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=7.5e-06 Score=75.24 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=82.2
Q ss_pred cchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 042119 110 GNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL 189 (286)
Q Consensus 110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~ 189 (286)
+.|+..+..+.+ +..-..+..+|++|||.+.++.- +++ .++.++|++||.|+.|+.+|.+++.+++ +.+++..+
T Consensus 131 EE~V~~Vid~~~---~~~~~~~~~ildlgtGSGaIsls-ll~-~L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALN---NSEHSKHTHILDLGTGSGAISLS-LLH-GLPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHh---hhhhcccceEEEecCCccHHHHH-HHh-cCCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEE
Confidence 344444444444 33335667999999998666544 444 3789999999999999999999999999 78999888
Q ss_pred ----Eccccchhh-cCCCcceeehh-----------------------hhccCC--hhHHHHHHHHHHhhccCCcEEEEe
Q 042119 190 ----TRDIMEVKE-QLGEYDCIFLA-----------------------ALVGMS--KEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 190 ----~~D~~~~~~-~l~~fD~V~~a-----------------------alvg~~--~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
++|..+-.. .++.+|+++.. |+.|.. ......++.-.-|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 555543221 22456665311 122110 122345666677888999888776
Q ss_pred e
Q 042119 240 S 240 (286)
Q Consensus 240 ~ 240 (286)
.
T Consensus 285 ~ 285 (328)
T KOG2904|consen 285 L 285 (328)
T ss_pred e
Confidence 4
No 195
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.20 E-value=7.1e-06 Score=72.84 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHH-------hcCCCCCCeEEEEccc
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVA-------SDAEFEGRMKFLTRDI 193 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~-------~~g~l~~~i~f~~~D~ 193 (286)
.+...++++++..+||||| .|-..+..|- ..+++ +.||++.+...+.|++..+ ..|.-..++++..||.
T Consensus 34 il~~~~l~~~dvF~DlGSG-~G~~v~~aal--~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSG-VGNVVFQAAL--QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHTT--TT-EEEEES-T-TSHHHHHHHH--HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHhCCCCCCEEEECCCC-CCHHHHHHHH--HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3445567889999999999 5766565554 46776 9999999999999886543 3442235789999998
Q ss_pred cchh---hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 194 MEVK---EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 194 ~~~~---~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.+.. ..+.+.|+||+..+. .+. +...-|..+...||+|.++|.-
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~-F~~-~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC-FDP-DLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT-T-H-HHHHHHHHHHTTS-TT-EEEES
T ss_pred cccHhHhhhhcCCCEEEEeccc-cCH-HHHHHHHHHHhcCCCCCEEEEC
Confidence 6533 124678999988764 333 3444557788899999998863
No 196
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.3e-05 Score=73.49 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Ccc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EYD 204 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~fD 204 (286)
.+.+|++|++-|+|.+++| -.+|+...|-+++..+|......+.|++-++..| +++++++.+-|+....+..+ .+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlS-haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLS-HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHH-HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccccccccc
Confidence 4689999999999987765 5677767789999999999999999999999999 89999999999977666553 599
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
.||++- +.....+-+..+.+|.+|.-++
T Consensus 180 aVFLDl------PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 180 AVFLDL------PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred eEEEcC------CChhhhhhhhHHHhhhcCceEE
Confidence 999884 3556788899999998885444
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.18 E-value=2.4e-05 Score=68.35 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Ccce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~fD~ 205 (286)
-.+.++||+=+|.+.+....+.+ ...+++.||.|..+....+++++.+| +..+.+++..|+...+..+. .||+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHHHhcCCCCcccE
Confidence 46889999866665666666666 56789999999999999999999999 78899999999986544442 3999
Q ss_pred eehhhhccCChhHHHHHHHH--HHhhccCCcEEEEeecC
Q 042119 206 IFLAALVGMSKEEKLTILGH--IRKYMKDGGILLVRSAK 242 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~--l~~~l~pgg~lv~r~~~ 242 (286)
||++---....-++...+.. -...|+|||.+++....
T Consensus 118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99885322222333444444 34569999999998754
No 198
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.18 E-value=2.6e-05 Score=73.98 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=84.6
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCCCcce
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLGEYDC 205 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~~fD~ 205 (286)
.+++|..|||==||++|+ .+.. .+.|++++|.|+|..|++-|+.+++..|. ....+..+ |+.+++..-..||.
T Consensus 194 ~v~~G~~vlDPFcGTGgi---LiEa-gl~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 194 RVKRGELVLDPFCGTGGI---LIEA-GLMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred ccccCCEeecCcCCccHH---HHhh-hhcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccce
Confidence 357889999999998654 3333 36899999999999999999999999993 45666666 99998854345999
Q ss_pred eehhhhc-------cCC-hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 206 IFLAALV-------GMS-KEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 206 V~~aalv-------g~~-~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
|..+--- +.. .+-..++|+...++|++||.+++-..
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9776421 111 24578999999999999999988765
No 199
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.14 E-value=5.4e-06 Score=74.82 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=69.5
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
+-++|||||+ |.+++.+|. ++ -+|+++|++++|++.|++...--- .....++...+..++....++.|+|..+-.
T Consensus 35 ~~a~DvG~G~-Gqa~~~iae-~~--k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGN-GQAARGIAE-HY--KEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCC-CcchHHHHH-hh--hhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeehhhhh
Confidence 4899999998 599999998 33 679999999999998888532111 112233333333333333457999987755
Q ss_pred ccCChhHHHHHHHHHHhhccCCc-EEEE
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGG-ILLV 238 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg-~lv~ 238 (286)
++| =+-.+++..+.|+||+.| ++.+
T Consensus 110 ~HW--Fdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHW--FDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHh--hchHHHHHHHHHHcCCCCCEEEE
Confidence 555 355579999999999877 5555
No 200
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.12 E-value=1.2e-05 Score=75.98 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.++.|||||||+ |.-++.-|++ ...+|+++|.|.-+ +.|++++...| +++.|+++.|.+.++.-+....|+++-
T Consensus 59 f~dK~VlDVGcGt-GILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 59 FKDKTVLDVGCGT-GILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred cCCCEEEEcCCCc-cHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceEEEecCccceeEEee
Confidence 4689999999995 7778888883 35789999999555 99999999999 899999999999987555668998842
Q ss_pred ---hhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 209 ---AALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 209 ---aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
....- ....-..+|-.=-+.|+|||.+.
T Consensus 134 EWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 22110 00122234444446889999874
No 201
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.12 E-value=2.8e-05 Score=71.78 Aligned_cols=114 Identities=19% Similarity=0.334 Sum_probs=84.1
Q ss_pred CCCEEEEeccCCC--hhhHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHh-----cC--------------C--
Q 042119 130 QPKKVAFVGSGPM--PLTSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVAS-----DA--------------E-- 181 (286)
Q Consensus 130 ~~~~VL~IG~G~l--p~tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~-----~g--------------~-- 181 (286)
.+-||.-.||+++ |+|..++...+++ ..+|++.|||..+++.|++-+=. .| .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999875 5665444443443 68999999999999999753211 11 0
Q ss_pred ------CCCCeEEEEccccchhhcCCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119 182 ------FEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 182 ------l~~~i~f~~~D~~~~~~~l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
+.+.|.|...|..+-....+.||+||.-. ++-++.+.|.+++..++..|+|||.|++-....
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 12467888888766443445799999754 447899999999999999999999999976443
No 202
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.11 E-value=1e-05 Score=77.35 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-----------
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----------- 199 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----------- 199 (286)
+.+|+|+=|| .|.-++.+|+ ...+|+|||++++|++.|+++++..|. ++++|+++++.++...
T Consensus 197 ~~~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 197 KGDVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TTEEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CCcEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccchhHHHHhhHHHHhhh
Confidence 3489999999 5777889998 678999999999999999999999994 7899999988665321
Q ss_pred ---C--CCcceeehhh
Q 042119 200 ---L--GEYDCIFLAA 210 (286)
Q Consensus 200 ---l--~~fD~V~~aa 210 (286)
+ ..+|+|+++-
T Consensus 271 ~~~~~~~~~d~vilDP 286 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDP 286 (352)
T ss_dssp GS-GGCTTESEEEE--
T ss_pred hhhhhhcCCCEEEEcC
Confidence 1 1478888873
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.10 E-value=2.3e-05 Score=75.57 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeeh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFL 208 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~ 208 (286)
+-+|||..||. |.=++..+++ .+| .+|+++|++|++++.++++++..+ + .++++.++|+..+.... ..||+|++
T Consensus 45 ~~~vLD~faGs-G~rgir~a~e-~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSAS-GIRAIRYAHE-IEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCch-hHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 35899999996 5555666662 234 589999999999999999999888 3 47899999998876543 36999999
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+-. | ....+++.+.+.+++||.|.+..
T Consensus 121 DPf-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPF-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCC-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 874 4 22368899999999999999874
No 204
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.10 E-value=1.9e-05 Score=74.03 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=75.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEccccchh------h
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG----RMKFLTRDIMEVK------E 198 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~i~f~~~D~~~~~------~ 198 (286)
++++.++++|||-+|- ++-.-++ .-.+++|+||.+..++.|++..+......+ ...|++||-.... .
T Consensus 116 ~~~~~~~~LgCGKGGD-LlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGD-LLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccccceeccCCccc-HhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 6789999999997664 4544442 346799999999999999998876532223 4789999975321 1
Q ss_pred cCCCcceeehh-hhc-cC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLA-ALV-GM-SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~a-alv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+...||+|=.- ++. .+ +.+.-..+|.++.+.|+|||++|-.-
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 12249998321 111 12 33444567899999999999999853
No 205
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.6e-05 Score=78.01 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=79.8
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Cc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~f 203 (286)
...++++|+|.=|| .|.-++.+|+ ...+|+|+|+++++++.|+++++..|. ++++|+.+|+.++...+. .|
T Consensus 290 ~~~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i--~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 290 ELAGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGI--DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hhcCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCC--CcEEEEeCCHHHHhhhccccCCC
Confidence 44677999999999 6777899997 789999999999999999999999994 459999999999887763 68
Q ss_pred ceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 204 DCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 204 D~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|.|+++--= |++ .++++.+.+. +|..++-+
T Consensus 364 d~VvvDPPR~G~~----~~~lk~l~~~-~p~~IvYV 394 (432)
T COG2265 364 DVVVVDPPRAGAD----REVLKQLAKL-KPKRIVYV 394 (432)
T ss_pred CEEEECCCCCCCC----HHHHHHHHhc-CCCcEEEE
Confidence 999998432 432 2466667655 55544433
No 206
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.09 E-value=3.9e-05 Score=70.93 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
-.|++|||+|||| | |+++-+....+ -.+++++|.|+.+++.|+.+++.... .....+. .+......+....|+|+
T Consensus 32 f~P~~vLD~GsGp-G-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGP-G-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-NRNAEWR-RVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCCceEEEecCCh-H-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-cccchhh-hhhhcccccCCCCcEEE
Confidence 5789999999997 3 55655553333 45799999999999999999886552 2222121 11111112333459998
Q ss_pred hhhhc-cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
.+... .++.+.+.++++.+.+.+++ .||+
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence 77654 44447888999999988776 4444
No 207
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=2.3e-05 Score=74.56 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=84.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..|.+|+|.=+|-+|+ |+.+|+ .|.. |+++|++|+|++..+++++..+ ++++|..++||+.++...+..||.|+
T Consensus 187 ~~GE~V~DmFAGVGpf-si~~Ak---~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPF-SIPIAK---KGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccc-hhhhhh---cCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHHhhhccccCCEEE
Confidence 5699999998885555 477887 4444 9999999999999999999999 78889999999999988878899999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+-... .-.+++....+.+++||++-+..
T Consensus 262 m~~p~-----~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 262 MGLPK-----SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eCCCC-----cchhhHHHHHHHhhcCcEEEEEe
Confidence 76432 22358888888999999998865
No 208
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=98.07 E-value=1.7e-05 Score=75.58 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC---CCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL---GEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l---~~fD 204 (286)
.++.+|+.+|+||+|+.++.+|+ .+..++|+.+|++++.+++|++.... +.+..... +.......+ .+||
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCC
Confidence 44459999999999999999998 46668999999999999999996322 22222222 221111112 2599
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
+||.++-. ...++...+.++|||.+++-...+
T Consensus 241 ~vie~~G~-------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 241 VVIEAVGS-------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EEEECCCC-------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 99987642 237888899999999999987544
No 209
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.06 E-value=1.2e-05 Score=80.32 Aligned_cols=99 Identities=27% Similarity=0.335 Sum_probs=73.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-------------
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME------------- 195 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~------------- 195 (286)
.++.+|+.+|+|+.|+.++.+|+. .|+.|+.+|.+++..+.+++ +|. +++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~----lGa-----~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-----eEEeccccccccccccceeecC
Confidence 578999999999999999999984 78999999999998777776 351 222222100
Q ss_pred ----------hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 196 ----------VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 196 ----------~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.....++|+||.++++...+.++ =+.+++.+.||||++++--
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~-Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK-LITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe-eehHHHHhhCCCCCEEEEe
Confidence 222346799999998884333333 3788899999999998754
No 210
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.03 E-value=3.4e-05 Score=77.17 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V 206 (286)
....-+++||||- |-..+.+|+ ..|...++|||+....+..|.+.+.+.|+ .++.++++|+..+...+ +++|-|
T Consensus 346 ~~~p~~lEIG~G~-G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGM-GEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCc-hHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEE
Confidence 4567899999995 666778888 58999999999999999999999888884 68999999876544433 358988
Q ss_pred ehhhhccCChhH-------HHHHHHHHHhhccCCcEEEEeec
Q 042119 207 FLAALVGMSKEE-------KLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 207 ~~aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
|+..--.|++.. ...+++.+++.|+|||.+-+++-
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 876433553321 23688899999999999999874
No 211
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.02 E-value=1.6e-05 Score=74.38 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.+|..||.|-.|+-+..+|- ..|+.|+-+|+|.+.++.-... .+ .|++..-....++.....+.|+|+-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~---f~---~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDL---FG---GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHh---hC---ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 56789999999999999999997 6899999999999998777666 34 5788888888888888889999999
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+++..+.+|. +.+++.+.||||++++-..
T Consensus 238 aVLIpgakaPkL-vt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 238 AVLIPGAKAPKL-VTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEecCCCCcee-hhHHHHHhcCCCcEEEEEE
Confidence 999966666774 8999999999999988654
No 212
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=98.02 E-value=2.8e-05 Score=73.05 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=72.2
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL 200 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l 200 (286)
++.+....++++|+.+|+|++|+.++.+|+. .|+ +|+++|.+++..+.+++ +|. ..-+.....|..+.....
T Consensus 161 al~~~~~~~g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~~ 233 (343)
T PRK09880 161 AAHQAGDLQGKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLARE----MGA-DKLVNPQNDDLDHYKAEK 233 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHH----cCC-cEEecCCcccHHHHhccC
Confidence 3444455678999999999999999999994 677 69999999999888876 452 111222222222222222
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.||+||.+. |. . ..++...+.|++||++++-.
T Consensus 234 g~~D~vid~~--G~---~--~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 234 GYFDVSFEVS--GH---P--SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCCEEEECC--CC---H--HHHHHHHHHhhcCCEEEEEc
Confidence 3599999653 31 1 35677888999999998865
No 213
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=76.37 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=75.9
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
.|.+...+++++|+.+|.|.+|..++.+|++ .|++|+++|++++-.+.|+++ | .. .++.+.-.+......
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~l----G---Ad-~~i~~~~~~~~~~~~ 227 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKL----G---AD-HVINSSDSDALEAVK 227 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHh----C---Cc-EEEEcCCchhhHHhH
Confidence 4555567899999999999999999999994 679999999999999999885 4 11 222221112222222
Q ss_pred -CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119 202 -EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 202 -~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
.||+|+..+ . ..-++...+.|++||++++-...+
T Consensus 228 ~~~d~ii~tv-------~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 228 EIADAIIDTV-------G-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hhCcEEEECC-------C-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 399988543 2 346777888999999999987553
No 214
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.00 E-value=6.7e-05 Score=69.68 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=86.2
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCC-Ccc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLG-EYD 204 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~-~fD 204 (286)
.+.++.+|||..+||+|=|+ .+|......+.|++.|+++..+..-++.++++|. ..+...+.|+..... ... .||
T Consensus 82 ~~~~~~~VLD~CAapGgKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTT-HLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHH-HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccCCCCcee-eeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccc
Confidence 56889999999999998886 4555334468999999999999999999999995 678888899887632 223 599
Q ss_pred eeehhhh------ccCChh---------------HHHHHHHHHHhhc----cCCcEEEEee
Q 042119 205 CIFLAAL------VGMSKE---------------EKLTILGHIRKYM----KDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aal------vg~~~~---------------~k~~vl~~l~~~l----~pgg~lv~r~ 240 (286)
.|++++- +.-+++ -..++|++..+.+ ||||++++.+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 9998762 111111 1457899999999 9999999975
No 215
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=1.6e-05 Score=74.64 Aligned_cols=117 Identities=20% Similarity=0.283 Sum_probs=80.6
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-----cccch
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-----DIMEV 196 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-----D~~~~ 196 (286)
+.++.+.+.+++||.+|+||+|+-++..|+ ++--.+|+.+|.++.+++.|++ +|. +-+..... +..+.
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~----~Ga--~~~~~~~~~~~~~~~~~~ 233 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKK----FGA--TVTDPSSHKSSPQELAEL 233 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHH----hCC--eEEeeccccccHHHHHHH
Confidence 445566799999999999999999999999 5666789999999999999999 451 22222211 11111
Q ss_pred hh-cC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCC
Q 042119 197 KE-QL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVV 253 (286)
Q Consensus 197 ~~-~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~ 253 (286)
.. .+ ..||++|-++... ..++.....+++||++++.. +|-...-+|..+
T Consensus 234 v~~~~g~~~~d~~~dCsG~~-------~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~ 285 (354)
T KOG0024|consen 234 VEKALGKKQPDVTFDCSGAE-------VTIRAAIKATRSGGTVVLVG-MGAEEIQFPIID 285 (354)
T ss_pred HHhhccccCCCeEEEccCch-------HHHHHHHHHhccCCEEEEec-cCCCccccChhh
Confidence 11 22 2499999887652 24555677889999966654 444455566554
No 216
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.99 E-value=5.6e-05 Score=69.32 Aligned_cols=152 Identities=17% Similarity=0.251 Sum_probs=87.5
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC------------------------
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF------------------------ 182 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l------------------------ 182 (286)
+..++.+++||||||.-+.++..++ .=-+|+.-|..+...+.-++.+++.|..
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 3456889999999998777665554 2356999999999888766666554310
Q ss_pred --CCCe-EEEEccccchhh--c---CC-Ccceeehhhh---ccCChhHHHHHHHHHHhhccCCcEEEEeec-------Cc
Q 042119 183 --EGRM-KFLTRDIMEVKE--Q---LG-EYDCIFLAAL---VGMSKEEKLTILGHIRKYMKDGGILLVRSA-------KG 243 (286)
Q Consensus 183 --~~~i-~f~~~D~~~~~~--~---l~-~fD~V~~aal---vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-------~g 243 (286)
...| .++..|+..... + +. .||+|+.... +.-+.+...+.+.++.+.|||||.|++-.. -|
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG 209 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG 209 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence 1123 266677765221 1 22 3999864322 245778999999999999999999999763 23
Q ss_pred ceeeecccCCccc----c--cCcEEEEEecCccc-ceee--eEEEee
Q 042119 244 ARAFLYPVVVEHD----L--LDFEVLSAVHPNDD-VINS--VVLVRN 281 (286)
Q Consensus 244 ~r~~lyp~v~~~~----l--~gf~~~~~~~P~~~-vins--vi~~r~ 281 (286)
-+.|.--.++.+. + .||++....++..- -+.+ +++|||
T Consensus 210 ~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 210 GHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp TEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred CEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 3332222223221 2 59988766652221 1223 566676
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.94 E-value=0.00014 Score=69.48 Aligned_cols=111 Identities=12% Similarity=0.217 Sum_probs=84.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHH--HHHHhcCC---CCCCeEEEEccccchhhcCC-
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVAR--SIVASDAE---FEGRMKFLTRDIMEVKEQLG- 201 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar--~~~~~~g~---l~~~i~f~~~D~~~~~~~l~- 201 (286)
+..++||.+|+| =|+.+-.+-| +| -.+||-+|.||++++.|+ ...++.+. -..|++.+..|+.+....-+
T Consensus 288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 456899999999 5999998888 67 579999999999999999 55555431 24699999999988766443
Q ss_pred CcceeehhhhccCC----hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 202 EYDCIFLAALVGMS----KEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 202 ~fD~V~~aalvg~~----~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
.||+|+++--=.-+ .=--.++..-+.++++++|.+++..++
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 69999987321100 001356788899999999999997643
No 218
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.94 E-value=8e-05 Score=64.04 Aligned_cols=109 Identities=12% Similarity=0.172 Sum_probs=86.1
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---- 200 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---- 200 (286)
...+.++..||++|-|++.+|-..|++ ..+...++.|+.|++-+..-.+. . +.++++.||+.++...+
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~-gv~~~~L~~iE~~~dF~~~L~~~---~----p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSR-GVRPESLTAIEYSPDFVCHLNQL---Y----PGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhc-CCCccceEEEEeCHHHHHHHHHh---C----CCccccccchhhHHHHHhhcC
Confidence 456788999999999999999998987 57788999999999988766664 2 34679999998766323
Q ss_pred -CCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 201 -GEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 201 -~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
..||.|+.+--+ ..+.....++++.+..++.+||.++-=+.
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 249999855322 44667788999999999999999886553
No 219
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.93 E-value=8e-06 Score=72.90 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=77.4
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC----Ccce
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG----EYDC 205 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~----~fD~ 205 (286)
....|++.=||. |-.++.+|. .+..|++||+||.-++.|+.+++.-| ..+||+|++||..++-..++ .+|+
T Consensus 94 ~~~~iidaf~g~-gGntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGV-GGNTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcC-CchHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence 567888888884 445567776 78999999999999999999999999 78899999999988655442 2668
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
||..---|.+---+.. +-.+..++.|.|.-+.|.
T Consensus 169 vf~sppwggp~y~~~~-~~DL~~~~~p~~~~~fk~ 202 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRAD-VYDLETHLKPMGTKIFKS 202 (263)
T ss_pred eecCCCCCCcchhhhh-hhhhhhhcchhHHHHHHh
Confidence 8876543333222322 335677777777666665
No 220
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.89 E-value=3e-05 Score=74.47 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=62.6
Q ss_pred EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccC----C---hhHHHHHHHHHHhhc
Q 042119 158 HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGM----S---KEEKLTILGHIRKYM 230 (286)
Q Consensus 158 ~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~----~---~~~k~~vl~~l~~~l 230 (286)
.+.|+|+|+.+++.|+.+++++| +++.|+|.++|+.++..+...+|+|+..---|. . ..-+..+.+.+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999 899999999999998877678999986532111 1 113444555666777
Q ss_pred cCCcEEEEee
Q 042119 231 KDGGILLVRS 240 (286)
Q Consensus 231 ~pgg~lv~r~ 240 (286)
+--++.|+.+
T Consensus 335 ~~ws~~v~tt 344 (381)
T COG0116 335 AGWSRYVFTT 344 (381)
T ss_pred cCCceEEEEc
Confidence 7667777765
No 221
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.89 E-value=4.3e-05 Score=65.64 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=73.3
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh------hcC---
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK------EQL--- 200 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~------~~l--- 200 (286)
.+.+|+|+||+|+|.|...+.+ ..+.++|+|+|+.+. .. -..+.++++|..+.. ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~-----------~~--~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM-----------DP--LQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc-----------cc--ccceeeeecccchhhHHHhhhhhcccc
Confidence 5599999999999999877655 235799999999987 22 145777777776421 111
Q ss_pred -CCcceeehhhh--c-cC-------ChhHHHHHHHHHHhhccCCcEEEEeecCcce--eeecccCCcccc-cCcEEEEEe
Q 042119 201 -GEYDCIFLAAL--V-GM-------SKEEKLTILGHIRKYMKDGGILLVRSAKGAR--AFLYPVVVEHDL-LDFEVLSAV 266 (286)
Q Consensus 201 -~~fD~V~~aal--v-g~-------~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r--~~lyp~v~~~~l-~gf~~~~~~ 266 (286)
+.||+|+.+.. + |. ..+--...+.-..+.|+|||.+++.-.++.. .+++ .+ ..|+.+.++
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~------~l~~~F~~v~~~ 162 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIY------LLKRCFSKVKIV 162 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHH------HHHHHHHHEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHH------HHHhCCeEEEEE
Confidence 36999987761 1 11 0122334455556778999999987644311 1111 11 367777777
Q ss_pred cCcc
Q 042119 267 HPND 270 (286)
Q Consensus 267 ~P~~ 270 (286)
.|..
T Consensus 163 Kp~~ 166 (181)
T PF01728_consen 163 KPPS 166 (181)
T ss_dssp E-TT
T ss_pred ECcC
Confidence 7654
No 222
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.86 E-value=6e-05 Score=69.33 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=66.2
Q ss_pred CCEEEEeccCCChhhH--HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119 131 PKKVAFVGSGPMPLTS--IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE 202 (286)
Q Consensus 131 ~~~VL~IG~G~lp~ta--i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~ 202 (286)
=+..|||||| +|..- =-+|++..|+++|+-+|.||-.++.||.++..... .+..++.+|+.+...-+ +-
T Consensus 69 IrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 69 IRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp --EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred cceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3789999999 88543 23455567999999999999999999999775441 35899999998743211 11
Q ss_pred cc------eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YD------CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD------~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+| +.+++.+... +.++...++..++..|.||..|++..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 33 3344433322 44677899999999999999999974
No 223
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.86 E-value=0.00012 Score=69.17 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=78.7
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.+..-.++-|+|||||. |.-+..-|++ ...+|.+++-| +|.+.||++++... +.+||+.+.|-+.++..+ ++.|
T Consensus 172 N~sDF~~kiVlDVGaGS-GILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~-~~~rItVI~GKiEdieLP-Ek~D 245 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGS-GILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNN-LADRITVIPGKIEDIELP-EKVD 245 (517)
T ss_pred cccccCCcEEEEecCCc-cHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCC-ccceEEEccCccccccCc-hhcc
Confidence 33345788999999996 7777766662 44689999998 88999999999887 899999999999876543 4789
Q ss_pred eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEE
Q 042119 205 CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 205 ~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
+++-.-+=-| --|.-.+-.-+.++.|+|.|...
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9874422111 11333445556789999999753
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.84 E-value=0.00026 Score=54.32 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=68.1
Q ss_pred EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc--hhhcC-CCcceeehhh
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME--VKEQL-GEYDCIFLAA 210 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~--~~~~l-~~fD~V~~aa 210 (286)
++++|||++ ... .+++....+..++++|+++.+++.++......+ . ..+.+..+|... .+... ..||++....
T Consensus 52 ~ld~~~g~g-~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTG-RLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-L-GLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcC-HHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-C-CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999964 433 444411122589999999999999666554422 1 117888888765 33332 2699983332
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
...+. . ....+.++.+.++|+|.+++...
T Consensus 128 ~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLL-P-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcC-C-HHHHHHHHHHhcCCCcEEEEEec
Confidence 22211 1 67899999999999999988763
No 225
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.80 E-value=0.00011 Score=67.69 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL 200 (286)
Q Consensus 121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l 200 (286)
+.+.++..++++.||+||-||+-+|--+|- .|.+|+++++||.+++.-.+.++-.. .+.+.+.+.||... .++
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d~ 121 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TDL 121 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CCC
Confidence 345577889999999999999877766654 58999999999999999999988877 67899999999954 455
Q ss_pred CCcceeeh
Q 042119 201 GEYDCIFL 208 (286)
Q Consensus 201 ~~fD~V~~ 208 (286)
..||.++-
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 67888764
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.78 E-value=0.00015 Score=75.41 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=59.1
Q ss_pred cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhhhccC---ChhHHHHHHHHHHhhc-
Q 042119 157 THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGM---SKEEKLTILGHIRKYM- 230 (286)
Q Consensus 157 ~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~---~~~~k~~vl~~l~~~l- 230 (286)
.+++|+|+|+++++.|++++...| +.++|+|.++|+.++.... +.||+|+..---|. ..++-.++...+.+.+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 379999999999999999999999 7889999999998875443 35999876532111 1122233444444444
Q ss_pred --cCCcEEEEeec
Q 042119 231 --KDGGILLVRSA 241 (286)
Q Consensus 231 --~pgg~lv~r~~ 241 (286)
.+|+.+.+-++
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 48887766543
No 227
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.77 E-value=9.9e-05 Score=65.94 Aligned_cols=106 Identities=16% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
...+.||.|+|-+-.|--+|.+ .=-+|..+|..+.-++.|++.+...+ ....++.+.-..++..+.+.||+||+-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~---~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP---VFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC---C-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHH---hcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 4579999999955555455555 23689999999999999998755422 234588888887776655689999975
Q ss_pred hhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 210 ALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 210 alv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
=.+ ..+.++-.++|.+....|+|||+|++.+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 333 4577889999999999999999999986
No 228
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.0002 Score=65.78 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=86.2
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEY 203 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~f 203 (286)
.+.+.+++.|++||+|.+.+|..++ + .+.+|++|++|+..++.-++... ..++++.+.+|+..+..+- ..+
T Consensus 25 ~a~~~~~d~VlEIGpG~GaLT~~Ll-~---~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 25 AANISPGDNVLEIGPGLGALTEPLL-E---RAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred hcCCCCCCeEEEECCCCCHHHHHHH-h---hcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCC
Confidence 4466778999999999888886654 4 57889999999999998888755 2368999999997654431 156
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccC--CcEEEEee-------c-CcceeeecccCCc---ccc-cCcEEE-EEecC
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKD--GGILLVRS-------A-KGARAFLYPVVVE---HDL-LDFEVL-SAVHP 268 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~p--gg~lv~r~-------~-~g~r~~lyp~v~~---~~l-~gf~~~-~~~~P 268 (286)
+.|+. .+ ...... .++.++...=.+ +.++++.- + .|.+.+-.-.+-. .+. .-|.+= ..++|
T Consensus 97 ~~vVa-Nl-PY~Iss--pii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~v~~~~~Vpp~~F~P 172 (259)
T COG0030 97 YKVVA-NL-PYNISS--PILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYADVEIVFDVPPSAFYP 172 (259)
T ss_pred CEEEE-cC-CCcccH--HHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEEEEEEEEEChhhCCC
Confidence 77662 22 111122 244444443222 44555532 1 1211111110000 011 112222 45688
Q ss_pred cccceeeeEEEeec
Q 042119 269 NDDVINSVVLVRNS 282 (286)
Q Consensus 269 ~~~vinsvi~~r~~ 282 (286)
-++|--+||..+++
T Consensus 173 ~PkVdSavv~L~~~ 186 (259)
T COG0030 173 PPKVDSAVVRLVPK 186 (259)
T ss_pred CCCccEEEEEEEeC
Confidence 89999888887763
No 229
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.73 E-value=0.00069 Score=64.09 Aligned_cols=166 Identities=14% Similarity=0.194 Sum_probs=107.3
Q ss_pred hhHHHHHHHHhcC------CCCCCEEEEeccCCChhhHHHHHhh--cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 042119 115 LSKLEYTILSENG------VVQPKKVAFVGSGPMPLTSIIMAKH--HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM 186 (286)
Q Consensus 115 l~~~E~~~l~~~~------~~~~~~VL~IG~G~lp~tai~lA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i 186 (286)
..+.|..+|.++. +.++..++++|||.+-=|.++|..- .....+.+.+|+|.++++.+.+.+.... + ..+
T Consensus 55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~-p~l 132 (319)
T TIGR03439 55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-F-SHV 132 (319)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-C-CCe
Confidence 4566666665543 3567799999999866666666542 1235789999999999999999887222 1 234
Q ss_pred EE--EEccccchhhc-----C-CCcceeeh-hhhccC-ChhHHHHHHHHHHh-hccCCcEEEEee---------------
Q 042119 187 KF--LTRDIMEVKEQ-----L-GEYDCIFL-AALVGM-SKEEKLTILGHIRK-YMKDGGILLVRS--------------- 240 (286)
Q Consensus 187 ~f--~~~D~~~~~~~-----l-~~fD~V~~-aalvg~-~~~~k~~vl~~l~~-~l~pgg~lv~r~--------------- 240 (286)
++ ++||-.+...- . ....++++ -+.+|. +.++...+|..+++ .|+||+.+++--
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d 212 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND 212 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence 44 88887653221 1 23566654 456654 67788899999999 999999988831
Q ss_pred cCcc-eeeec-------ccCCc--ccccCcEEEEEecCcccceeeeEEEeec
Q 042119 241 AKGA-RAFLY-------PVVVE--HDLLDFEVLSAVHPNDDVINSVVLVRNS 282 (286)
Q Consensus 241 ~~g~-r~~ly-------p~v~~--~~l~gf~~~~~~~P~~~vinsvi~~r~~ 282 (286)
..|. ++|+- ....- -++..|+-...+.|...-|...+++++.
T Consensus 213 ~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~ 264 (319)
T TIGR03439 213 PGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKD 264 (319)
T ss_pred CcchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCc
Confidence 1222 11210 00010 1234688888888887777777777653
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.72 E-value=0.00011 Score=64.42 Aligned_cols=140 Identities=15% Similarity=0.256 Sum_probs=95.2
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh-
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA- 209 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a- 209 (286)
...+.|+|.|.++++ ..-|+ ..-+|.+|+.||...++|.+++.-.|+ .+++.+++|+.+..+ ...|+|+..
T Consensus 33 ~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHH
Confidence 478999999986665 44444 467899999999999999999987785 799999999976444 568988643
Q ss_pred ---hhccCChhHHHHHHHHHHhhccCCcEEEEee----cC----cceeeecccCCc-ccccC---cEEEEEecCccccee
Q 042119 210 ---ALVGMSKEEKLTILGHIRKYMKDGGILLVRS----AK----GARAFLYPVVVE-HDLLD---FEVLSAVHPNDDVIN 274 (286)
Q Consensus 210 ---alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~----~~----g~r~~lyp~v~~-~~l~g---f~~~~~~~P~~~vin 274 (286)
+++ .+....++..+.+.|+-++.++=.. ++ .++...|..--+ ++... ++++.-..|.++|.|
T Consensus 105 lDTaLi---~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~ 181 (252)
T COG4076 105 LDTALI---EEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYN 181 (252)
T ss_pred hhHHhh---cccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhc
Confidence 233 2556679999999999999987532 22 233444443212 23222 444443446777877
Q ss_pred eeEEEee
Q 042119 275 SVVLVRN 281 (286)
Q Consensus 275 svi~~r~ 281 (286)
--.=.++
T Consensus 182 ~~lele~ 188 (252)
T COG4076 182 KKLELET 188 (252)
T ss_pred ceeEEec
Confidence 4443333
No 231
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.71 E-value=0.0002 Score=59.86 Aligned_cols=85 Identities=24% Similarity=0.339 Sum_probs=63.0
Q ss_pred EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Ccceeehhh--hccCC------hhHHHHHHHHHH
Q 042119 158 HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EYDCIFLAA--LVGMS------KEEKLTILGHIR 227 (286)
Q Consensus 158 ~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~fD~V~~aa--lvg~~------~~~k~~vl~~l~ 227 (286)
+|.++||-++|++.+++++++.| +.++++++.....++...+. .+|+|++.- +-|.| .+.-...++...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 58999999999999999999999 78899999999988777554 489887653 11322 244667899999
Q ss_pred hhccCCcEEEEeecCc
Q 042119 228 KYMKDGGILLVRSAKG 243 (286)
Q Consensus 228 ~~l~pgg~lv~r~~~g 243 (286)
+.|+|||++++.-+.|
T Consensus 80 ~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHEEEEEEEEEEE--S
T ss_pred HhhccCCEEEEEEeCC
Confidence 9999999998876443
No 232
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.69 E-value=0.00021 Score=69.86 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=73.0
Q ss_pred cchhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE
Q 042119 110 GNYVKLSKLEYTILSENG--VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK 187 (286)
Q Consensus 110 ~ny~~l~~~E~~~l~~~~--~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~ 187 (286)
+|-..+.+--+..+.+.. ..++++|+.+|+|++|......++ ..|++|+.+|+||...+.|++ .| . ..+
T Consensus 179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G-~-~~~- 249 (413)
T cd00401 179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EG-Y-EVM- 249 (413)
T ss_pred cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cC-C-EEc-
Confidence 433333333344444432 258999999999999999998888 478999999999998877765 56 2 111
Q ss_pred EEEccccchhhcCCCcceeehhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119 188 FLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS 240 (286)
Q Consensus 188 f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~ 240 (286)
+.. ....++|+|+.+.. .+ .++. ...+.|++||+++.-.
T Consensus 250 ----~~~---e~v~~aDVVI~atG------~~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 250 ----TME---EAVKEGDIFVTTTG------NK-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ----cHH---HHHcCCCEEEECCC------CH-HHHHHHHHhcCCCCcEEEEeC
Confidence 111 22357899987642 22 2444 4588999999998765
No 233
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00068 Score=59.13 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=75.1
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.++-+++||||. |.-+-.|++...+++...+.||+|+|.+..++-++..+ -++..+++|..+-... ++.|++++.
T Consensus 43 ~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~-~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRN-ESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhcc-CCccEEEEC
Confidence 488999999996 56666677767788999999999999999999988877 3688899998765544 567776433
Q ss_pred h-hc-----------------cCC--hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 210 A-LV-----------------GMS--KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 210 a-lv-----------------g~~--~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
- .| |.. .+--.+++.++-..|.|.|++.+-.
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 1 11 110 0112345556667778888776643
No 234
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00085 Score=60.04 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=79.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
+.+.+++||||-. ++-.+.+-+ ..+-..+++.|+++..++.|.+.+.+.+ +.++++...+|.......-+++|.|.+
T Consensus 15 ~~~~~iaDIGsDH-AYLp~~Lv~-~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDH-AYLPIYLVK-NNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCch-hHhHHHHHh-cCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence 5667799999987 455555555 3577899999999999999999999999 899999999999765554457999988
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|.+ | -.--.++|++-...++.=-.+++
T Consensus 92 AGM-G--G~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 92 AGM-G--GTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred eCC-c--HHHHHHHHHHhhhhhcCcceEEE
Confidence 743 2 23446788888887763334444
No 235
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.65 E-value=0.00022 Score=61.85 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=68.2
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccccchh
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDIMEVK 197 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~~~~~ 197 (286)
+|..||+|.+|-.-..+.. ..|.+|+-+|.|+++++.+++.+++ .|.+ ..++++. .|..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a--~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~--- 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA--RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLE--- 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH--HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGG---
T ss_pred CEEEEcCCHHHHHHHHHHH--hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHH---
Confidence 6899999998865443333 2699999999999999999988765 1211 2456643 3432
Q ss_pred hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 198 ~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+..+.|+|+.+. ..+.+-|.+++.++.+.++|+.+|...+
T Consensus 75 -~~~~adlViEai--~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 75 -EAVDADLVIEAI--PEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp -GGCTESEEEE-S---SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred -HHhhhheehhhc--cccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 223789999764 2366899999999999999999988865
No 236
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.64 E-value=0.0002 Score=58.58 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=50.5
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~ 195 (286)
.++||||| .|..++++++ ..++++|++||.+|++.+.+++.++..| + .+++++...+.+
T Consensus 1 ~vlDiGa~-~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGAN-IGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCC-ccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence 37999999 5788888888 4777899999999999999999999888 4 469999888754
No 237
>PRK10742 putative methyltransferase; Provisional
Probab=97.64 E-value=0.0003 Score=64.17 Aligned_cols=81 Identities=9% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCCCCC--EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc------CC-CCCCeEEEEccccchh
Q 042119 127 GVVQPK--KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD------AE-FEGRMKFLTRDIMEVK 197 (286)
Q Consensus 127 ~~~~~~--~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~------g~-l~~~i~f~~~D~~~~~ 197 (286)
+++++. +|||.=+| +|-.++.+|. .|++|+.+|.+|....+-++.++++ +. +..+|+++++|+.+..
T Consensus 83 glk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 83 GIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred CCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 557777 99999999 6888999998 6999999999999999999998875 31 2368999999998887
Q ss_pred hcCC-Ccceeehhhh
Q 042119 198 EQLG-EYDCIFLAAL 211 (286)
Q Consensus 198 ~~l~-~fD~V~~aal 211 (286)
.... .||+||++-.
T Consensus 159 ~~~~~~fDVVYlDPM 173 (250)
T PRK10742 159 TDITPRPQVVYLDPM 173 (250)
T ss_pred hhCCCCCcEEEECCC
Confidence 6543 6999998753
No 238
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.62 E-value=0.00038 Score=65.86 Aligned_cols=101 Identities=21% Similarity=0.211 Sum_probs=70.1
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCC----CCCCeEEEEccccchhhc
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAE----FEGRMKFLTRDIMEVKEQ 199 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~----l~~~i~f~~~D~~~~~~~ 199 (286)
-++|.+||+|.+|..-..... ..|.+|+.+|+++++.+.+++.++ +.|. ...++++.. | +...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~---l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARAL--AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T---IEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C---HHHH
Confidence 478999999998866433322 379999999999999888776543 1220 113445432 2 2234
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
..+.|+|+.+. ..+.+-|..+++++.+.++|+.+|...
T Consensus 81 v~~aDlViEav--pE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 81 VADADFIQESA--PEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred hcCCCEEEECC--cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 46789999764 345678999999999999999855443
No 239
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=97.58 E-value=0.0012 Score=58.98 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=78.6
Q ss_pred CCCCEEEEeccCCCh-hhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcCCCcce
Q 042119 129 VQPKKVAFVGSGPMP-LTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQLGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp-~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l~~fD~ 205 (286)
...+.++++.|+..+ -|++-||-+ ..+|+++++|-.+++.....++.+...| +.+.++|+.||. .++...+.+.|+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~iDF 118 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGIDF 118 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCCCE
Confidence 455788999765333 245555543 5799999999999999999999998888 778889999985 457778889999
Q ss_pred eehhhhccCChhHHH-HHHHHHHhhccCCcEEEEeec
Q 042119 206 IFLAALVGMSKEEKL-TILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 206 V~~aalvg~~~~~k~-~vl~~l~~~l~pgg~lv~r~~ 241 (286)
++++.-. ++.. ++|+. .+.=+.|++++..++
T Consensus 119 ~vVDc~~----~d~~~~vl~~-~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 119 VVVDCKR----EDFAARVLRA-AKLSPRGAVVVCYNA 150 (218)
T ss_pred EEEeCCc----hhHHHHHHHH-hccCCCceEEEEecc
Confidence 9988653 5655 66665 333345666666664
No 240
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.56 E-value=0.00039 Score=65.49 Aligned_cols=97 Identities=15% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
...++++||.+|+|++|+.++.+|++...+++|+++|.+++..+.|++ ++. . +.. + +.... .++|+|
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~---~~~-~--~~~~~-~g~d~v 226 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T---YLI-D--DIPED-LAVDHA 226 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e---eeh-h--hhhhc-cCCcEE
Confidence 356789999999999999998888732446789999999999888875 341 1 111 1 11222 259999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|-+. |.. .....++...+.|++||++++-.
T Consensus 227 iD~~--G~~--~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 FECV--GGR--GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EECC--CCC--ccHHHHHHHHHhCcCCcEEEEEe
Confidence 9654 311 12246778889999999998764
No 241
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.53 E-value=0.00026 Score=66.25 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=63.5
Q ss_pred hhhHHHHHHhcCCCCcccccccC-cCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEE
Q 042119 84 LLELEFATFLTKIPQPLNNLSLF-PYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNF 162 (286)
Q Consensus 84 ~lE~~~A~~l~~~~~p~~~L~~f-py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~i 162 (286)
+|-.+|.-..- +-|-+.|-+- |---||..-+..-+... .......-++||||+|+-..=.++-++ ..|++++|.
T Consensus 58 LLk~dfgl~~w--diP~~~LcP~iP~R~nYi~~i~DlL~~~-~~~~~~~v~glDIGTGAscIYpLLg~~--~~~W~fvaT 132 (299)
T PF05971_consen 58 LLKHDFGLDVW--DIPEGRLCPPIPNRLNYIHWIADLLASS-NPGIPEKVRGLDIGTGASCIYPLLGAK--LYGWSFVAT 132 (299)
T ss_dssp HHHHHH----------TTS----HHHHHHHHHHHHHHHT---TCGCS---EEEEES-TTTTHHHHHHHH--HH--EEEEE
T ss_pred HHHHhcCCccc--cCCCCCcCCCCchhHHHHHHHHHHhhcc-ccccccceEeecCCccHHHHHHHHhhh--hcCCeEEEe
Confidence 44444443331 4454444432 43347776665432211 011223579999999997776777776 369999999
Q ss_pred eCChHHHHHHHHHHHhc-CCCCCCeEEEEcccc-chhhcC----CCcceeeh
Q 042119 163 DIDEAANDVARSIVASD-AEFEGRMKFLTRDIM-EVKEQL----GEYDCIFL 208 (286)
Q Consensus 163 Did~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~-~~~~~l----~~fD~V~~ 208 (286)
|||+.+++.|++++++. + |+++|+++...-. .+...+ +.||+.+.
T Consensus 133 dID~~sl~~A~~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 133 DIDPKSLESARENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp ES-HHHHHHHHHHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred cCCHHHHHHHHHHHHhccc-cccceEEEEcCCccccchhhhcccceeeEEec
Confidence 99999999999999999 7 8999999866432 222211 35888753
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.52 E-value=0.00021 Score=63.61 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=54.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.+...|+|.|||-. .||+....+.+|+.+|.-+. . ++ ...+|..++|-+.+..|+|++
T Consensus 71 ~~~~viaD~GCGdA-----~la~~~~~~~~V~SfDLva~------------n---~~--Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 71 PKSLVIADFGCGDA-----KLAKAVPNKHKVHSFDLVAP------------N---PR--VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp -TTS-EEEES-TT------HHHHH--S---EEEEESS-S------------S---TT--EEES-TTS-S--TT-EEEEEE
T ss_pred CCCEEEEECCCchH-----HHHHhcccCceEEEeeccCC------------C---CC--EEEecCccCcCCCCceeEEEE
Confidence 44579999999963 24443234578999998631 1 33 566999998888788998876
Q ss_pred h-hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 A-ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+ ++.| .+...++.+..|.|||||.|.+.+.
T Consensus 129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 129 CLSLMG---TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp ES---S---S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EhhhhC---CCcHHHHHHHHheeccCcEEEEEEe
Confidence 5 4556 5788999999999999999999874
No 243
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.50 E-value=0.00042 Score=65.38 Aligned_cols=97 Identities=14% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC---ChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI---DEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi---d~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
..++.+|+.+|+|++|+.++.+|++ .|++|++++. +++..+.+++ +|. +.+.....|..+ ......||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~----~Ga--~~v~~~~~~~~~-~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEE----LGA--TYVNSSKTPVAE-VKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHH----cCC--EEecCCccchhh-hhhcCCCC
Confidence 4578999999999999999999994 6889999997 6777666654 562 212221112111 11224699
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+||.+..- + ..+....+.|++||.+++-.
T Consensus 241 ~vid~~g~-----~--~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATGV-----P--PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcCC-----H--HHHHHHHHHccCCcEEEEEe
Confidence 99976431 2 26778889999999998754
No 244
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.49 E-value=0.00088 Score=61.66 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=67.9
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-------HhcCCCC--------CCeEEEEccccch
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-------ASDAEFE--------GRMKFLTRDIMEV 196 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-------~~~g~l~--------~~i~f~~~D~~~~ 196 (286)
++|.+||+|.+|.+...... ..|.+|+.+|++++.++.+++.+ .+.|.+. .++++ +.|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~--- 77 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL--- 77 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH---
Confidence 47999999998877555444 36889999999999998776433 2233111 13443 2332
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
...++.|+|+.+.- -+.+-|.+++.++.+.++|+.+|+.
T Consensus 78 -~~~~~aDlVi~av~--e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 78 -DDLKDADLVIEAAT--ENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred -HHhccCCeeeeccc--ccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 23467999998753 2346788999999999999987744
No 245
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.46 E-value=0.00072 Score=63.46 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
+.+...+++++||..|+|++|..++.+|+. .|++|+++|.+++..+.|++ +| ...-++ ..+ ...+.
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~G-a~~vi~-----~~~--~~~~~ 223 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LG-AASAGG-----AYD--TPPEP 223 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hC-Cceecc-----ccc--cCccc
Confidence 334456889999999999999999999994 78999999999998776665 56 221111 111 11135
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++.+..++ ..+....+.+++||++++-.
T Consensus 224 ~d~~i~~~~~~-------~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 224 LDAAILFAPAG-------GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ceEEEECCCcH-------HHHHHHHHhhCCCcEEEEEe
Confidence 89877654431 36778889999999998865
No 246
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.44 E-value=0.0012 Score=61.21 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=70.3
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEccccch
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE--------GRMKFLTRDIMEV 196 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~--------~~i~f~~~D~~~~ 196 (286)
++|.+||+|.+|..-..... ..|.+|+.+|+++++++.+++.+++ .|.+. .++++ +.|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~--- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA--RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL--- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH---
Confidence 58999999998866433322 3799999999999999987766432 22110 23333 2332
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhc-cCCcEEEEee
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYM-KDGGILLVRS 240 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l-~pgg~lv~r~ 240 (286)
..+.+.|+|+.+. .-+.+-|..++..+.+.+ +||.+++..+
T Consensus 80 -~~~~~~d~ViEav--~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 80 -GDFADRQLVIEAV--VEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred -HHhCCCCEEEEec--ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2356899999764 346688999999999998 7888887754
No 247
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.43 E-value=0.00032 Score=67.55 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=68.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-++.+|+.||+|+.|..++..++. .|++|+.+|.+++..+.+.+. .| ..+.....+..++...+.++|+|+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~~---~g---~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDAE---FG---GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHh---cC---ceeEeccCCHHHHHHHHccCCEEEE
Confidence 367889999999999999999984 688999999999876554332 33 2232222333334444568999997
Q ss_pred hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+..+ +.. .+. -+-++..+.|+||++++--.
T Consensus 237 a~~~~g~~-~p~-lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAK-APK-LVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCC-CCc-CcCHHHHhcCCCCCEEEEEe
Confidence 7644 221 121 13466777899999887644
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.43 E-value=0.0036 Score=56.80 Aligned_cols=109 Identities=22% Similarity=0.319 Sum_probs=68.0
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch-hhcC-
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV-KEQL- 200 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~-~~~l- 200 (286)
+.+.+.-.+++||+||-+ =++|+.+|- ..+..+|+.+|||+..++.-++.+++.|. +|+.+..|+.+- |.++
T Consensus 37 ~~~~gdL~gk~il~lGDD--DLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~ 110 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDD--DLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELR 110 (243)
T ss_dssp HHHTT-STT-EEEEES-T--T-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTS
T ss_pred HHhcCcccCCEEEEEcCC--cHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHh
Confidence 334455678999999997 568888886 46779999999999999999999999994 499999999763 3344
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCc-EEEEe
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGG-ILLVR 239 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg-~lv~r 239 (286)
+.||++|.+-- .+.+--.-++.+-...||.-| ...+.
T Consensus 111 ~~fD~f~TDPP--yT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 111 GKFDVFFTDPP--YTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp S-BSEEEE-----SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred cCCCEEEeCCC--CCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 57999998742 223444457777777777666 44443
No 249
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.42 E-value=0.00034 Score=61.01 Aligned_cols=101 Identities=20% Similarity=0.346 Sum_probs=62.3
Q ss_pred CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHH------------HHHHhcCCCCCCeEEEEccccchhh
Q 042119 132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVAR------------SIVASDAEFEGRMKFLTRDIMEVKE 198 (286)
Q Consensus 132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar------------~~~~~~g~l~~~i~f~~~D~~~~~~ 198 (286)
++|..||.|-.|++ |..||+ .|.+|+|+|+|++.++.-+ +++++.. -..+.++. .|.. .
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~---~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIE---E 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHH---H
T ss_pred CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhh---h
Confidence 58999999999965 556666 8999999999999887765 2333221 12455553 3332 2
Q ss_pred cCCCcceeehhhhccC------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLAALVGM------SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalvg~------~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.....|++|++.--.. +...-..+++.+.+.+++|.++++++
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 2346799988753211 12334678999999999999999998
No 250
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.42 E-value=0.00072 Score=61.79 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=69.2
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhh--
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKE-- 198 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~-- 198 (286)
+.+....++++||.+|+|++|+.++.+|+. .|++ |+++|.+++..+.|++ +| ...-+.. .+. ..+..
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~--~~~~~~~~~~~ 183 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALS----FG-ATALAEP--EVLAERQGGLQ 183 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CcEecCc--hhhHHHHHHHh
Confidence 334455688999999999999999999994 6876 9999999998887766 45 2111111 111 11111
Q ss_pred cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.-..+|+|+.+.-. + ..++...+.++|||+++.-.
T Consensus 184 ~~~g~d~vid~~G~-----~--~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 184 NGRGVDVALEFSGA-----T--AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCCCEEEECCCC-----h--HHHHHHHHHhcCCCEEEEec
Confidence 11369999865321 1 36677888999999998765
No 251
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.40 E-value=0.00083 Score=62.17 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=66.6
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc----------CCC--------CCCeEEEEccc
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD----------AEF--------EGRMKFLTRDI 193 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~----------g~l--------~~~i~f~~~D~ 193 (286)
++|..||+|.+|.+...... ..|.+|+.+|++++.++.+++.+++. |.. ..++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 58999999999876444433 36889999999999999887654431 210 0123332 222
Q ss_pred cchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 194 ~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
..+.+.|+|+.+.. -+.+.|..+++++.+.++|+.+++.
T Consensus 81 ----~~~~~aDlVieav~--e~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 81 ----ESLSDADFIVEAVP--EKLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred ----HHhCCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 23457899998753 2335589999999999998887653
No 252
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.38 E-value=0.0022 Score=60.87 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHhcCCCCcccccc---cCcCccchh---hhhHH---HHHHHHh--c-----CCCCC
Q 042119 68 QKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLS---LFPYYGNYV---KLSKL---EYTILSE--N-----GVVQP 131 (286)
Q Consensus 68 ~~l~~~l~~l~~~~e~~lE~~~A~~l~~~~~p~~~L~---~fpy~~ny~---~l~~~---E~~~l~~--~-----~~~~~ 131 (286)
.++.+.+-...++....-..+|.+.+..+.+++..-. .|.|..-.. ..+.. ....+.. . +.+.-
T Consensus 99 ~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v 178 (342)
T KOG3178|consen 99 GSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV 178 (342)
T ss_pred CchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence 3555666677777777888899999988766654433 366664433 22221 1111111 0 11234
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
...+|+|+|. |-++-.+.. .+|. |.+++.|..-+-.++.... .| |+.+-||-.. . ...-|+||+.-.
T Consensus 179 ~~avDvGgGi-G~v~k~ll~-~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq--~-~P~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGI-GRVLKNLLS-KYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQ--D-TPKGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcH-hHHHHHHHH-hCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccc--c-CCCcCeEEEEee
Confidence 8999999995 555555544 4665 7777777777777777654 44 7888888743 2 446789987644
Q ss_pred c-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 212 V-GMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 212 v-g~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+ .|+.++-.++|+++++-++|||.|++.+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3 7788999999999999999999999865
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.36 E-value=0.00098 Score=62.64 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=63.4
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-----C
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-----G 201 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-----~ 201 (286)
.+.++..++|-=+|.+|-|...+.+ +++++|+|+|+||+|++.|++.++..+ .|+++++++-.++...+ .
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~--l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQ--LGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhcCCC
Confidence 4567889999999977777665543 456999999999999999999887654 69999999988765432 4
Q ss_pred Ccceeehhhhc
Q 042119 202 EYDCIFLAALV 212 (286)
Q Consensus 202 ~fD~V~~aalv 212 (286)
.+|.|+++-.|
T Consensus 92 ~vDgIl~DLGv 102 (305)
T TIGR00006 92 KIDGILVDLGV 102 (305)
T ss_pred cccEEEEeccC
Confidence 58988877544
No 254
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.35 E-value=0.0017 Score=53.80 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEccccchhhcCCCc
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKH---HLTSTHFDNFDIDEAANDVARSIVASDAE-FEGRMKFLTRDIMEVKEQLGEY 203 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l~~~i~f~~~D~~~~~~~l~~f 203 (286)
..++.+|+|+||| -|+.+..+|.. ..++.+|++||.++..++.|++..++.+. +..++++..++..+... ....
T Consensus 23 ~~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 23 SKRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred cCCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCC
Confidence 3678999999999 68888888861 03899999999999999999999998772 23678888887654322 2344
Q ss_pred ceee
Q 042119 204 DCIF 207 (286)
Q Consensus 204 D~V~ 207 (286)
++++
T Consensus 101 ~~~v 104 (141)
T PF13679_consen 101 DILV 104 (141)
T ss_pred eEEE
Confidence 5544
No 255
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.35 E-value=0.00083 Score=63.97 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=64.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++++++||||+|+|.|-. +.+ .|++|++||..+ .+..+ .. ..+|++..+|........+.+|+|+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~-L~~---rG~~V~AVD~g~----l~~~L-~~----~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQ-LVR---RGMFVTAVDNGP----MAQSL-MD----TGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHH-HHH---cCCEEEEEechh----cCHhh-hC----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence 6899999999999999854 445 578999999664 22332 22 25899999998765443457999997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCC
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDG 233 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pg 233 (286)
+.. +...++.+-+.+-+..|
T Consensus 277 Dmv-----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV-----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc-----cCHHHHHHHHHHHHhcC
Confidence 743 35557888888888766
No 256
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.34 E-value=0.00039 Score=61.72 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=60.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhh--cC-CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-----cC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKH--HL-TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-----QL 200 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~--~~-~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-----~l 200 (286)
.+|+.|+++|.- -|-|++++|+- .+ ..++|+|||||....+. +..+..+ +.++|+|+.||..+... .+
T Consensus 31 ~kPd~IIE~Gi~-~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIA-HGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--T-TSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecC-CCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence 478999999996 57799988863 22 77999999997544322 2233355 67899999999875321 12
Q ss_pred ---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 ---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
....+|+.++... .+.=.+.|+...+.++||+.+|+-+
T Consensus 107 ~~~~~~vlVilDs~H~--~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHT--HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred hccCCceEEEECCCcc--HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 2345788877532 2455578888999999999999965
No 257
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.33 E-value=0.0018 Score=59.83 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC---C------------------------
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA---E------------------------ 181 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g---~------------------------ 181 (286)
..+.+||.=||| +|.-+.-+|+ .|..+.|.|.|--|+=.++-++..-. .
T Consensus 55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 456799999999 7888999998 69999999999999877776655300 0
Q ss_pred -----------CCCCeEEEEccccchhhcC---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 182 -----------FEGRMKFLTRDIMEVKEQL---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 182 -----------l~~~i~f~~~D~~~~~~~l---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-..++....||-.++-.+. +.||+|..+.++- ++++-.+.++.|.+.|||||+.|=-.
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEecC
Confidence 1245677777776655444 4799998876662 34678899999999999999776544
No 258
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=97.32 E-value=0.00074 Score=62.97 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=70.0
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--c
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--Q 199 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~ 199 (286)
+.+..+.++++||.+|+|++|..++.+|++ .|++ |+++|.+++..+.+++ +| ...-+.....+...+.. .
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKA----LG-ADFVINSGQDDVQEIRELTS 228 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEcCCcchHHHHHHHhC
Confidence 344566789999999999999999999994 7888 9999999998877765 45 21112221112111111 1
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-..||+||.+..- . ..+....+.|+++|.+++-.
T Consensus 229 ~~~~d~vid~~g~------~-~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSGN------T-AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCCC------H-HHHHHHHHHhhcCCEEEEEc
Confidence 1369999965421 1 24566778899999998754
No 259
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00068 Score=59.73 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=76.4
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
...++|||+.|+|+ |+-+|.-|+. -...|+..|++|...+..+-+++..| -.|.|...|... +...||+++
T Consensus 77 tVrgkrVLd~gags-gLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 77 TVRGKRVLDLGAGS-GLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred ccccceeeeccccc-ChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC---CCcceeEEE
Confidence 36789999999996 8999988872 44679999999999999999999888 379999999844 335799988
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
..-++ .+...-.+++.-..+....|..+++-+.
T Consensus 148 agDlf-y~~~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 148 AGDLF-YNHTEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred eecee-cCchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 65444 2223334567755555556666665554
No 260
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.30 E-value=0.0019 Score=59.75 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=67.5
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEccccch
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE--------GRMKFLTRDIMEV 196 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~--------~~i~f~~~D~~~~ 196 (286)
++|.+||+|.+|.+...... ..|.+|+.+|++++.++.+.+.+... |.+. .++++. .|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA--LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL--- 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence 68999999998876544333 36889999999999998876543321 3111 234432 232
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
..+.+.|+|+.+.. .+.+.|..+++.+.+.++|+.+++.
T Consensus 79 -~~~~~aD~Vieavp--e~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 79 -EDLADCDLVIEAAT--EDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred -HHhcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 23467899998742 2345688999999999999987763
No 261
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.30 E-value=0.00078 Score=67.57 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcC-------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch-----h
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHL-------TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV-----K 197 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~-------~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~-----~ 197 (286)
.+.+|+|.|||.+++....+.+ .. ....++|+|+|+.++..|+.++...+. ..+++.++|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~-~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKK-NEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHH-HHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence 4579999999987766544433 11 126799999999999999999887762 2456666664321 1
Q ss_pred hcCCCcceeeh
Q 042119 198 EQLGEYDCIFL 208 (286)
Q Consensus 198 ~~l~~fD~V~~ 208 (286)
...+.||+|+.
T Consensus 108 ~~~~~fD~IIg 118 (524)
T TIGR02987 108 SYLDLFDIVIT 118 (524)
T ss_pred cccCcccEEEe
Confidence 12247999864
No 262
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=97.27 E-value=0.00089 Score=63.68 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=69.4
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--C
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--G 201 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~ 201 (286)
...+.++++||..|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+.....|..+....+ +
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LG-ATATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cC-CceEeCCCchhHHHHHHHHhCC
Confidence 3456788999999999999999999994 688 69999999999888765 46 2211222112211111111 2
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+|+||.+. |. . ..++...+.+++||.++.-.
T Consensus 259 g~d~vid~~--G~---~--~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFEMA--GS---V--PALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCEEEECC--CC---h--HHHHHHHHHHhcCCEEEEEc
Confidence 699998653 21 1 35667788899999988764
No 263
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.25 E-value=0.0012 Score=62.23 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=68.0
Q ss_pred HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccchhhcC
Q 042119 124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIMEVKEQL 200 (286)
Q Consensus 124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~~~~~l 200 (286)
.+..+.++.+|+..|+|++|..++.+|+. .|++|+++|.+++..+.+++ +| ...-+..... |..+....+
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~ 232 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG----FG-ADLTLNPKDKSAREVKKLIKAF 232 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----hC-CceEecCccccHHHHHHHHHhh
Confidence 34456789999999999999999999994 68899999999999887765 45 2211222111 111111111
Q ss_pred ---CCcc----eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 ---GEYD----CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ---~~fD----~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.++| +||.+. |. . ..++...+.+++||++++-.
T Consensus 233 t~~~g~d~~~d~v~d~~--g~---~--~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 233 AKARGLRSTGWKIFECS--GS---K--PGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cccCCCCCCcCEEEECC--CC---h--HHHHHHHHHHhcCCeEEEEC
Confidence 2455 676543 21 1 35566778899999998764
No 264
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.24 E-value=0.0024 Score=59.00 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=68.3
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC---------CCeEEEEccccc
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE---------GRMKFLTRDIME 195 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~---------~~i~f~~~D~~~ 195 (286)
++|..||+|.+|.+...... ..|.+|+.+|++++.++.+++.+++. +.+. .++++ +.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~-- 78 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDL-- 78 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCH--
Confidence 58999999998866544333 36889999999999999988764321 0010 23443 2333
Q ss_pred hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.....+.|+|+.+.. .+.+-|..+++++.+.++++.+|+..
T Consensus 79 -~~a~~~aDlVieavp--e~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 79 -AEAVKDADLVIEAVP--EDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred -HHHhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 223457899998743 23456899999999999888876543
No 265
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.23 E-value=0.00019 Score=61.33 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=66.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-------------------
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL------------------- 189 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~------------------- 189 (286)
.+|.+|+++|.|..|..|..+++. .|++|+.+|..++..+..+.. + ...+...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~~~~~~~~~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDERPERLRQLESL----G--AYFIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESSHHHHHHHHHT----T--TEESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCCHHHHHhhhcc----c--CceEEEcccccccccccchhhhhHHH
Confidence 578999999999999999999995 799999999999887765543 2 1223331
Q ss_pred EccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 190 TRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 190 ~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...-..+...+..+|+|+.+.+......++ =+-++..+.|+||.+++--+
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~-lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGKRAPR-LVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTSS----SBEHHHHHTSSTTEEEEETT
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCCCCCE-EEEhHHhhccCCCceEEEEE
Confidence 111111222335689999877763233333 46778888999888887665
No 266
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0031 Score=56.48 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V 206 (286)
+++.|||.||=| +|+..-.+.. .+-.+=+.|+..|+..++-|+..=.. .++|-...|--.++...+ +.||=|
T Consensus 100 tkggrvLnVGFG-MgIidT~iQe--~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFG-MGIIDTFIQE--APPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccc-hHHHHHHHhh--cCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCccee
Confidence 788999999999 7887777765 34455567899999988777652222 256777777666665544 469999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc-eeeecccCC
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA-RAFLYPVVV 253 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~-r~~lyp~v~ 253 (286)
+.+..-. .-++-..+.+++.+.|||+|++..=+.-|. +.+.|.+.+
T Consensus 174 ~yDTy~e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~vy~ 220 (271)
T KOG1709|consen 174 YYDTYSE-LYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDVYK 220 (271)
T ss_pred Eeechhh-HHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhhhh
Confidence 9887632 336778899999999999999988765333 335555433
No 267
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0067 Score=53.87 Aligned_cols=137 Identities=19% Similarity=0.176 Sum_probs=90.3
Q ss_pred hcC-CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh------
Q 042119 125 ENG-VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK------ 197 (286)
Q Consensus 125 ~~~-~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~------ 197 (286)
++. .+++++|+|+|+-|+|-|- ..++...++..|++||+.|-. .-..+.|+.+|.++-.
T Consensus 39 k~~i~~~~~~ViDLGAAPGgWsQ-va~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 39 KFKLFKPGMVVVDLGAAPGGWSQ-VAAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred hcCeecCCCEEEEcCCCCCcHHH-HHHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHH
Confidence 444 3788999999999998874 445545566779999999742 2245899999987532
Q ss_pred hcCC--Ccceeehhhh--c-cCC-------hhHHHHHHHHHHhhccCCcEEEEeecCccee--eecccCCcccc-cCcEE
Q 042119 198 EQLG--EYDCIFLAAL--V-GMS-------KEEKLTILGHIRKYMKDGGILLVRSAKGARA--FLYPVVVEHDL-LDFEV 262 (286)
Q Consensus 198 ~~l~--~fD~V~~aal--v-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~--~lyp~v~~~~l-~gf~~ 262 (286)
..++ .+|+|+.+.. + |.. ..-...+++-...+++|||.+++....|--. +++ .+ ..|+.
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~------~~~~~F~~ 178 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK------ALRRLFRK 178 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH------HHHHhhce
Confidence 2333 3699984321 1 221 1224455666777999999999987655211 111 12 47999
Q ss_pred EEEecCcccceee---eEEEee
Q 042119 263 LSAVHPNDDVINS---VVLVRN 281 (286)
Q Consensus 263 ~~~~~P~~~vins---vi~~r~ 281 (286)
+....|....-|| +++++.
T Consensus 179 v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 179 VKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred eEEecCccccCCCceEEEEEec
Confidence 9999998887776 555554
No 268
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.12 E-value=0.0022 Score=59.27 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=67.4
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEccccch
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE--------GRMKFLTRDIMEV 196 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~--------~~i~f~~~D~~~~ 196 (286)
++|.+||+|.+|.+...... ..|.+|+.+|++++.++.+++.+.. .|.+. .++++. .|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 75 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA--VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDL--- 75 (288)
T ss_pred cEEEEECccHHHHHHHHHHH--hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcH---
Confidence 58999999998876443322 2688999999999999998764322 11000 123322 232
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.....+.|+|+.+.. -+.+-|..++.++.+.++|+.+++..
T Consensus 76 ~~~~~~aD~Vi~avp--e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 76 KAAVADADLVIEAVP--EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred HHhhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 233467899997743 34456888999999999998877554
No 269
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=97.11 E-value=0.0018 Score=61.25 Aligned_cols=100 Identities=19% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-C--CC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-L--GE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l--~~ 202 (286)
...++++||..|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+.....|..+.... . .+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FG-ATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcCCCcCHHHHHHHHhCCCC
Confidence 45788999999999999999999994 688 49999999998888765 56 211122222222111111 1 25
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-+. |. + ..++...+.+++||++++-.
T Consensus 246 ~d~vid~~--g~---~--~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAV--GR---P--ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECC--CC---H--HHHHHHHHHhccCCEEEEEC
Confidence 99998543 31 1 35666778899999998764
No 270
>PLN02740 Alcohol dehydrogenase-like
Probab=97.10 E-value=0.0019 Score=61.81 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=68.0
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhcC--
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQL-- 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~l-- 200 (286)
....++++||.+|+|++|+.++.+|+. .|+ +|+++|.+++..+.+++ +| ...-++... .|..+....+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKE----MG-ITDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHH----cC-CcEEEecccccchHHHHHHHHhC
Confidence 456889999999999999999999994 677 69999999999888866 56 222122211 0111111111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~ 240 (286)
+++|+|+.+.-. . ..+....+.+++| |++++-.
T Consensus 267 ~g~dvvid~~G~-----~--~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN-----V--EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC-----h--HHHHHHHHhhhcCCCEEEEEc
Confidence 269999865431 1 3566666788886 8887755
No 271
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.09 E-value=0.0034 Score=58.44 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=75.9
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHh-----hcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE
Q 042119 113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAK-----HHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK 187 (286)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~-----~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~ 187 (286)
..+++.=..++ .+.++.+|+|-.||.+++-.-.+.. ......++.|+|+++.++.+|+-.+.-.|.-.....
T Consensus 32 ~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred HHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 44555444433 5567789999999987765444331 013689999999999999999987654452112356
Q ss_pred EEEccccchhhc--CCCcceeehhhhccCC--------------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 188 FLTRDIMEVKEQ--LGEYDCIFLAALVGMS--------------------KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 188 f~~~D~~~~~~~--l~~fD~V~~aalvg~~--------------------~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+..+|....+.. ...||+|+..--.+.. ...-..++.++.+.|++||++++--
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 889998654433 2479998643211111 0111358899999999999866543
No 272
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0031 Score=62.23 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=85.6
Q ss_pred cccCcCccchhhhhHHHHHHHHhcCCCCCC-EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC
Q 042119 103 LSLFPYYGNYVKLSKLEYTILSENGVVQPK-KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE 181 (286)
Q Consensus 103 L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~-~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~ 181 (286)
...|-+|..|..+...-...+ .+-. +++.+|||.-.++ .-...-.--.||++|+|+-+++.....-.+.
T Consensus 25 ~~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGNS~l~---e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-- 94 (482)
T KOG2352|consen 25 SDPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGNSELS---EHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-- 94 (482)
T ss_pred CChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCCCHHH---HHHHhcCCCCceeccccHHHHHHHHhccccC--
Confidence 345666666666654433322 3445 9999999964443 3321112356999999999999887765432
Q ss_pred CCCCeEEEEccccchhhcCCCcceeeh----hhhc-c----CChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 182 FEGRMKFLTRDIMEVKEQLGEYDCIFL----AALV-G----MSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 182 l~~~i~f~~~D~~~~~~~l~~fD~V~~----aalv-g----~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
..-+++.+.|.....++..+||+|+. +++. + ++...+...+.+++++++|||+.+.-
T Consensus 95 -~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 95 -RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred -CcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 25789999999988888888999863 3332 1 11234667899999999999986554
No 273
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.02 E-value=0.0041 Score=57.61 Aligned_cols=98 Identities=24% Similarity=0.315 Sum_probs=66.8
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEccccch
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAEFE--------GRMKFLTRDIMEV 196 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~l~--------~~i~f~~~D~~~~ 196 (286)
++|.+||+|.+|..-..... ..|.+|+.+|.+++.++.+++.++ +.|.+. .++++. .|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--- 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA--AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL--- 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH---
Confidence 68999999988865443322 368999999999999987766433 222111 122222 222
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
....+.|+|+.+.. .+.+.|..++.++.+.++|+.+|+.
T Consensus 79 -~~~~~aD~Vieav~--e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 79 -EELRDADFIIEAIV--ESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred -HHhCCCCEEEEcCc--cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 23467899998743 3457899999999999999887763
No 274
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=97.01 E-value=0.0018 Score=60.18 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=62.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
.++++|+.+|+|++|+.++.+|+. .|++ |..+|.+++.++.|.+. + . + |..+. .-.+||+||
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~--~G~~~v~~~~~~~~rl~~a~~~----~-~---i-----~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKA--AGGSPPAVWETNPRRRDGATGY----E-V---L-----DPEKD--PRRDYRAIY 205 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHhhhhc----c-c---c-----Chhhc--cCCCCCEEE
Confidence 457899999999999999999994 5776 67789998887666542 2 1 1 11110 113699999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+.-. + ..++...+.|++||++++-.
T Consensus 206 d~~G~-----~--~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD-----P--SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC-----H--HHHHHHHHhhhcCcEEEEEe
Confidence 66431 2 35677888999999999764
No 275
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.98 E-value=0.0039 Score=61.18 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=72.9
Q ss_pred ccchhhhhHHHHHHHHhc-CC-CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 042119 109 YGNYVKLSKLEYTILSEN-GV-VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM 186 (286)
Q Consensus 109 ~~ny~~l~~~E~~~l~~~-~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i 186 (286)
|+|-....+--+..+.+. .. ..+++|+.+|+|++|......++ ..|++|+.+|+|+.....|.. .| .
T Consensus 188 ~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr--~~Ga~ViV~d~dp~ra~~A~~----~G-~---- 256 (425)
T PRK05476 188 FDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLR--GLGARVIVTEVDPICALQAAM----DG-F---- 256 (425)
T ss_pred ccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCchhhHHHHh----cC-C----
Confidence 344444445455555555 33 47899999999999998888887 378999999999976544322 35 1
Q ss_pred EEEEccccchhhcCCCcceeehhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119 187 KFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS 240 (286)
Q Consensus 187 ~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~ 240 (286)
++ .+..+ .+..+|+|+.+. | .+ .++. ...+.||+|++++.-.
T Consensus 257 ~v--~~l~e---al~~aDVVI~aT--G----~~-~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 257 RV--MTMEE---AAELGDIFVTAT--G----NK-DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred Ee--cCHHH---HHhCCCEEEECC--C----CH-HHHHHHHHhcCCCCCEEEEcC
Confidence 11 23222 235789998653 2 33 3554 6788999999888764
No 276
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.98 E-value=0.0037 Score=58.58 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=67.2
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE 202 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~ 202 (286)
....++++||..|+|++|..++.+|+. .|++ |+++|.+++..+.+++ +| ...-+.....+..++.... ..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKS----LG-AMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CceEecCcccCHHHHHHHhcCCC
Confidence 345788999999999999999999994 6886 7999999998887654 45 2111121111211111111 25
Q ss_pred cc-eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YD-CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD-~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+| +||.+. | . ...+....+.|++||.+++-.
T Consensus 229 ~d~~v~d~~--G----~-~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETA--G----V-PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 78 666443 2 1 136777889999999998865
No 277
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.97 E-value=0.0049 Score=64.53 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEccccc
Q 042119 132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE--------GRMKFLTRDIME 195 (286)
Q Consensus 132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~--------~~i~f~~~D~~~ 195 (286)
++|..||+|.+|-. +.++|. .|.+|+-+|+++++++.+.+.+++. |.+. .++++. .|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 409 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-- 409 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH--
Confidence 68999999999876 334444 7999999999999999987766532 2111 345443 222
Q ss_pred hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+.+.|+|+.+.. .+.+-|.+++.++-++++|+++|...+
T Consensus 410 --~~~~~aDlViEAv~--E~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 410 --SGFKNADMVIEAVF--EDLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred --HHhccCCeehhhcc--ccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 24568999997743 356889999999999999999888754
No 278
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.95 E-value=0.0046 Score=56.77 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=64.4
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
...++||||+|-++.| ..||. ++ .+|++-|.|+.| |..+++-| .+.+ |..+.......||+|-.-
T Consensus 94 ~~~~lLDlGAGdG~VT-~~l~~-~f--~~v~aTE~S~~M----r~rL~~kg-----~~vl--~~~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVT-ERLAP-LF--KEVYATEASPPM----RWRLSKKG-----FTVL--DIDDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHH-HHHHh-hc--ceEEeecCCHHH----HHHHHhCC-----CeEE--ehhhhhccCCceEEEeeh
Confidence 5679999999976665 55676 34 559999999999 34455556 2333 333333322479998755
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.+.--. .....+|++|++.++|+|++++.
T Consensus 159 NvLDRc-~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 159 NVLDRC-DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhcc-CCHHHHHHHHHHHhCCCCEEEEE
Confidence 444111 35568999999999999999885
No 279
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.94 E-value=0.0056 Score=57.03 Aligned_cols=98 Identities=16% Similarity=0.228 Sum_probs=63.7
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-cCCC---------CCCeEEEEccccchhhcCC
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-DAEF---------EGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~g~l---------~~~i~f~~~D~~~~~~~l~ 201 (286)
++|.+||+|.+|.+...... ..|.+|+.+|.+++.++.+++.+.+ .|.+ ..++++ +.|. ....+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~~~ 78 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGL---AAAVS 78 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCH---HHHhc
Confidence 68999999998876444333 3688999999999999988875322 1200 012332 2232 22345
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
+.|+|+++.-- +.+.|..++..+.+.++++.+++
T Consensus 79 ~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 79 GADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred cCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEE
Confidence 78999987431 22357889999988877766554
No 280
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=96.91 E-value=0.0059 Score=56.88 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=69.9
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.....++++|+..|+|++|..++.+|++ .|++|+.++.+++..+.+++ +| ...-+.....|..+....++.+|
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAK--MGFRTVAISRGSDKADLARK----LG-AHHYIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----cC-CcEEecCCCccHHHHHHhcCCCC
Confidence 3455788999999999999999999994 78999999999888777754 45 21112222222222122235689
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+.+. | . ...+....+.++++|.++.-.
T Consensus 231 ~vi~~~--g----~-~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 231 LILATA--P----N-AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEEECC--C----c-hHHHHHHHHHcccCCEEEEEe
Confidence 988432 1 1 136778889999999998754
No 281
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.91 E-value=0.0049 Score=60.18 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=66.3
Q ss_pred HHHHHhc-C-CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119 120 YTILSEN-G-VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK 197 (286)
Q Consensus 120 ~~~l~~~-~-~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~ 197 (286)
+..+.+. + ...+++|+.+|+|+.|......++ ..|++|+++|.||.....|+ ..| . .+ .+..+
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~----~~G-~----~v--~~lee-- 246 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAA----MDG-F----RV--MTMEE-- 246 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHH----hcC-C----Ee--CCHHH--
Confidence 3444443 2 367899999999999999999888 47999999999997544333 245 1 11 22222
Q ss_pred hcCCCcceeehhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119 198 EQLGEYDCIFLAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS 240 (286)
Q Consensus 198 ~~l~~fD~V~~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~ 240 (286)
.+...|+|+.+. | .+ .++. +....||+|++++.-.
T Consensus 247 -al~~aDVVItaT--G----~~-~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 247 -AAKIGDIFITAT--G----NK-DVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred -HHhcCCEEEECC--C----CH-HHHHHHHHhcCCCCcEEEEEC
Confidence 235689988642 2 33 3454 4778999999888764
No 282
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.88 E-value=0.0042 Score=56.81 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=67.2
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE 202 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~ 202 (286)
...+.++..|++||.|++-+|..+ ++ .+.+++++|+|+...+.-++... ...+++++.+|+.++.... ..
T Consensus 25 ~~~~~~~~~VlEiGpG~G~lT~~L-~~---~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 25 ALDLSEGDTVLEIGPGPGALTREL-LK---RGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHTCGTTSEEEEESSTTSCCHHHH-HH---HSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCSS
T ss_pred hcCCCCCCEEEEeCCCCccchhhH-hc---ccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhcC
Confidence 446678999999999987777655 44 34999999999999888887644 2368999999997654432 11
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCC---cEEEEe
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDG---GILLVR 239 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg---g~lv~r 239 (286)
-...+++.+ ... --..++.++...-+.| .++++.
T Consensus 97 ~~~~vv~Nl-Py~--is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 97 QPLLVVGNL-PYN--ISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp SEEEEEEEE-TGT--GHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred CceEEEEEe-ccc--chHHHHHHHhhcccccccceEEEEe
Confidence 223444443 222 2235777776643443 445554
No 283
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.84 E-value=0.0051 Score=59.55 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=78.3
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccccchhh-cCCCcceee
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDIMEVKE-QLGEYDCIF 207 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~~~~~~-~l~~fD~V~ 207 (286)
.+-+|||.=||. |+=++..|+......+|+.-|+|++|++..+++++..| +++ +++..+.|+..+.. .-..||+|=
T Consensus 49 ~~~~~lDalaas-GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAAS-GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TT-SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccc-cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEE
Confidence 456999999985 88889999842334689999999999999999999998 677 79999999977663 224799998
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
++-+ | ....+++...+.++.||.|.+...
T Consensus 127 lDPf-G----Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 LDPF-G----SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp E--S-S------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred eCCC-C----CccHhHHHHHHHhhcCCEEEEecc
Confidence 8866 3 445699999999999999999753
No 284
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0019 Score=64.12 Aligned_cols=123 Identities=14% Similarity=0.217 Sum_probs=82.2
Q ss_pred cCccchhhhhHHHHHHHHh-cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119 107 PYYGNYVKLSKLEYTILSE-NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR 185 (286)
Q Consensus 107 py~~ny~~l~~~E~~~l~~-~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~ 185 (286)
.+|++--..+..=+..++. ++...++-++|+=||+ |...+.+|+ +-.+|.||+++|++++-|++++...|. .+
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sN 432 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGI--SN 432 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchhcCc--cc
Confidence 4444444444333333322 2567889999999995 788889998 678999999999999999999999995 78
Q ss_pred eEEEEccccchhhcC-CC-c---c-eeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 186 MKFLTRDIMEVKEQL-GE-Y---D-CIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 186 i~f~~~D~~~~~~~l-~~-f---D-~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+|++|-++++-..+ +. + + +++++- -.|++ . .++..++++-+|- ++++++
T Consensus 433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh--~--~~ik~l~~~~~~~-rlvyvS 489 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLH--M--KVIKALRAYKNPR-RLVYVS 489 (534)
T ss_pred eeeeecchhhccchhcccCCCCCceEEEECCCccccc--H--HHHHHHHhccCcc-ceEEEE
Confidence 999999766654333 22 2 3 344442 23543 2 4777777764454 344444
No 285
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=96.82 E-value=0.0058 Score=57.84 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC--C
Q 042119 126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL--G 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l--~ 201 (286)
..+.++++||..|+ |++|..++.+|+. .|++|++++.+++..+.+++ .+| ...-+..... |..+..... +
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~---~lG-a~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKN---KLG-FDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH---hcC-CCEEEECCCcccHHHHHHHHCCC
Confidence 34678999999998 9999999999994 78999999999988776653 256 2222222211 222211111 3
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++|+||-+. | . ..+....+.+++||++++-.
T Consensus 228 gvD~v~d~v--G----~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNV--G----G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECC--C----H--HHHHHHHHHhccCCEEEEEC
Confidence 699998543 2 1 36677888999999998754
No 286
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.82 E-value=0.0035 Score=57.55 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=64.5
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
....-|+|+|||-. -+|. .....|+.+|+-+ .+ + +++..|..++|.+.+..|++++
T Consensus 179 ~~~~vIaD~GCGEa-----kiA~--~~~~kV~SfDL~a------------~~---~--~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 179 PKNIVIADFGCGEA-----KIAS--SERHKVHSFDLVA------------VN---E--RVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred cCceEEEecccchh-----hhhh--ccccceeeeeeec------------CC---C--ceeeccccCCcCccCcccEEEe
Confidence 44568999999953 3453 2457799999752 22 3 4567899998888889998766
Q ss_pred h-hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 A-ALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+ ++.| .+-..++.+..|.|+|||.+-+..
T Consensus 235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 235 CLSLMG---TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eHhhhc---ccHHHHHHHHHHHhccCceEEEEe
Confidence 5 4556 577899999999999999998865
No 287
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.81 E-value=0.005 Score=57.54 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+++|+.||.|..|..++..+++ .|++|+.+|.+++..+.++ ..|. ++. +..++...+.++|+||.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~~~~~~~~----~~G~-----~~~--~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKSAHLARIT----EMGL-----SPF--HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH----HcCC-----eee--cHHHHHHHhCCCCEEEE
Confidence 368999999999999998888874 6899999999988755544 3552 222 12233444568999997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.-. .-+-+.+.+.|+||++++--.
T Consensus 217 t~p~-------~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPA-------LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCCh-------hhhhHHHHHcCCCCcEEEEEc
Confidence 6321 123456677899998877443
No 288
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.80 E-value=0.0081 Score=55.70 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=67.8
Q ss_pred cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC--C
Q 042119 126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL--G 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l--~ 201 (286)
....++++||..| +|++|..++.+|++ .|++|++++.+++..+.+++ +| ...-+..... +..+..... +
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~----lG-a~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKK----LG-FDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeccccccHHHHHHHhCCC
Confidence 3567889999999 69999999999994 78999999999988777654 56 2211222111 121111111 3
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++|+||.+. | . ..+....+.+++||+++.-.
T Consensus 207 gvdvv~d~~--G----~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNV--G----G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECC--C----H--HHHHHHHHHhCcCcEEEEec
Confidence 699998542 2 1 24577889999999998754
No 289
>PLN02494 adenosylhomocysteinase
Probab=96.78 E-value=0.01 Score=58.84 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHh---cCC------CCcccccccCcCccchhhhhHHHHHHHHhcC--CCCCCEEE
Q 042119 67 VQKMRESLIVLCGRAEGLLELEFATFL---TKI------PQPLNNLSLFPYYGNYVKLSKLEYTILSENG--VVQPKKVA 135 (286)
Q Consensus 67 ~~~l~~~l~~l~~~~e~~lE~~~A~~l---~~~------~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~--~~~~~~VL 135 (286)
-.++.+.++=.+-+-+.-.-+.++..- +.. +.+.+++ |+|-..+-+--++.+.+.. ...+++|+
T Consensus 184 ~~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~-----fDn~yGtgqS~~d~i~r~t~i~LaGKtVv 258 (477)
T PLN02494 184 YHKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSK-----FDNLYGCRHSLPDGLMRATDVMIAGKVAV 258 (477)
T ss_pred hhHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhh-----hhccccccccHHHHHHHhcCCccCCCEEE
Confidence 344555555555555444444444221 111 3444432 3333232222244444442 25789999
Q ss_pred EeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCC
Q 042119 136 FVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMS 215 (286)
Q Consensus 136 ~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~ 215 (286)
.+|+|++|......++ ..|++|+.+|+|+.....|.. .| .. +. +..+ .+...|+|+.+.
T Consensus 259 ViGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~----~G-~~----vv--~leE---al~~ADVVI~tT----- 317 (477)
T PLN02494 259 ICGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQALM----EG-YQ----VL--TLED---VVSEADIFVTTT----- 317 (477)
T ss_pred EECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHh----cC-Ce----ec--cHHH---HHhhCCEEEECC-----
Confidence 9999999999988888 368999999999876544433 45 21 11 2222 235689998642
Q ss_pred hhHHHHHHHHHHhhccCCcEEEEee
Q 042119 216 KEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 216 ~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+.-+.....+.||+||+|+--.
T Consensus 318 -Gt~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 318 -GNKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred -CCccchHHHHHhcCCCCCEEEEcC
Confidence 233334477888999999998864
No 290
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.76 E-value=0.008 Score=56.05 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=60.8
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
++|..||+|.+|.+.....+......+|+++|.+++..+.+++ .| .... ...+. ...+.+.|+|+++.-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g-~~~~---~~~~~---~~~~~~aDvViiavp 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LG-LGDR---VTTSA---AEAVKGADLVILCVP 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CC-CCce---ecCCH---HHHhcCCCEEEECCC
Confidence 6899999998887654433321112489999999998776653 45 2111 12222 223457899998754
Q ss_pred ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
. .....+++.+...++||++++.-
T Consensus 76 ~----~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 76 V----GASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred H----HHHHHHHHHHHhhCCCCCEEEeC
Confidence 3 34567888888889999876553
No 291
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.76 E-value=0.006 Score=57.98 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=70.8
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCC--Cc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLG--EY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~--~f 203 (286)
.+.++++|+.+|+|..|++++.-|+ ...-.+|++||++++..++|+++ | ..+-++-... |+.+...++. +.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~f----G-AT~~vn~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKKF----G-ATHFVNPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHhc----C-CceeecchhhhhHHHHHHHhcCCCC
Confidence 3589999999999999999999998 45567899999999999999984 5 2222221111 4444333332 68
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|.+|.+.- .. ++++.-.....++|..++-.
T Consensus 256 d~~~e~~G------~~-~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 256 DYAFECVG------NV-EVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred CEEEEccC------CH-HHHHHHHHHHhcCCeEEEEe
Confidence 99886542 22 36666666777789887754
No 292
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.74 E-value=0.0057 Score=58.20 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=67.4
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhcC--
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQL-- 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~l-- 200 (286)
..+.++++||..|+|++|+.++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+.... .+..+....+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LG-ATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCeEEcccccchhHHHHHHHHhC
Confidence 456789999999999999999999994 677 79999999998888866 45 222222211 1111111111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~ 240 (286)
+++|+|+.+.-. ...+....+.+++| |+++.-.
T Consensus 254 ~g~d~vid~~G~-------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSFECIGN-------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEEECCCC-------HHHHHHHHHHhhcCCCeEEEEe
Confidence 269999865321 13566677788886 8887654
No 293
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.72 E-value=0.0085 Score=56.96 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..++++||..|+|++|+.++.+|+. .|++|+++|.+++... +.++++| . +.+ +...+...+....+.+|+||
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~vi~~~~~~~~~~---~~~~~~G-a-~~v-i~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKA--FGLKVTVISSSSNKED---EAINRLG-A-DSF-LVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCcchhh---hHHHhCC-C-cEE-EcCCCHHHHHhhcCCCCEEE
Confidence 3678999999999999999999994 7899999998876432 2233466 2 111 11111111222223689999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+... . ..++...+.+++||+++.-.
T Consensus 253 d~~g~-----~--~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 DTVSA-----V--HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ECCCC-----H--HHHHHHHHHhcCCcEEEEeC
Confidence 55321 1 25677888999999998754
No 294
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.70 E-value=0.0092 Score=62.28 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=72.5
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccccch
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDIMEV 196 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~~~~ 196 (286)
++|..||+|.+|-.-..+.. ..|.+|+-+|+++++++.+++.+++ .|.+ -.++++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA--SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY--- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---
Confidence 68999999998876443332 3799999999999999988766532 1111 1345543 222
Q ss_pred hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.++.+.|+|+.+. ..+.+-|.+++.++-+.++|+.+|...+
T Consensus 388 -~~~~~aDlViEav--~E~l~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 388 -AGFERVDVVVEAV--VENPKVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred -HHhcCCCEEEecc--cCcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 3456899999774 3466899999999999999998887754
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.69 E-value=0.0076 Score=57.71 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc-ccc-hhhcC--C
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD-IME-VKEQL--G 201 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D-~~~-~~~~l--~ 201 (286)
...++.+||.+|+|++|..++.+|++ .|. +|+++|.+++..+.+++.. + . ..+.+...+ ..+ +.... .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~--~g~~~vi~~~~~~~~~~~~~~~~---~-~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKL--LGAERVIAIDRVPERLEMARSHL---G-A-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcC---C-c-EEEcCCcchHHHHHHHHHcCCC
Confidence 45678999999999999999999994 566 6999999999998888752 3 1 222222221 111 11111 2
Q ss_pred Ccceeehhhhcc--------------CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 202 EYDCIFLAALVG--------------MSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 202 ~fD~V~~aalvg--------------~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.+|+|+-+..-. .+..++...++.+.+.|+|+|.++.-..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 599988643100 0112345688999999999999998763
No 296
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0082 Score=56.05 Aligned_cols=167 Identities=21% Similarity=0.291 Sum_probs=113.5
Q ss_pred cCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 042119 94 TKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVAR 173 (286)
Q Consensus 94 ~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar 173 (286)
+++-.-+.....|.|-+-|-.+.-- ....|++|+.||.|-+|.--+.. + |..=..++-+|+|...++.++
T Consensus 93 lDgviqlte~de~~Yqemi~~l~l~--------s~~npkkvlVVgggDggvlrevi-k-H~~ve~i~~~eiD~~Vie~sk 162 (337)
T KOG1562|consen 93 LDGVIQLTERDEFAYQEMIAHLALC--------SHPNPKKVLVVGGGDGGVLREVI-K-HKSVENILLCEIDENVIESSK 162 (337)
T ss_pred eCCeeeCCccccccceeeeeccccc--------cCCCCCeEEEEecCCccceeeee-c-cccccceeeehhhHHHHHHHH
Confidence 3343333455578887766655431 24688999999999888754443 3 334467899999999999999
Q ss_pred HHHHhc--CCCCCCeEEEEccccchhhcC--CCcceeehhhh--ccCChhH--HHHHHHHHHhhccCCcEEEEeec----
Q 042119 174 SIVASD--AEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAAL--VGMSKEE--KLTILGHIRKYMKDGGILLVRSA---- 241 (286)
Q Consensus 174 ~~~~~~--g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aal--vg~~~~~--k~~vl~~l~~~l~pgg~lv~r~~---- 241 (286)
+....+ |.-++++.++-||...+.... +.||+|++++- +| ++.. ...+++.+.+.||+||++++...
T Consensus 163 ~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl 241 (337)
T KOG1562|consen 163 QYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQGECMWL 241 (337)
T ss_pred HHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence 987653 423579999999998887766 46999998763 32 3333 24688899999999999999641
Q ss_pred -----Ccceee--------ecccCCcc----cccCcEEEEEecCccc
Q 042119 242 -----KGARAF--------LYPVVVEH----DLLDFEVLSAVHPNDD 271 (286)
Q Consensus 242 -----~g~r~~--------lyp~v~~~----~l~gf~~~~~~~P~~~ 271 (286)
+-+|+| .||..... ...||..+....|..+
T Consensus 242 ~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~~~~~~~ 288 (337)
T KOG1562|consen 242 HLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCSKLKPDGK 288 (337)
T ss_pred HHHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEecccCCCCC
Confidence 223444 34433321 2248888776666654
No 297
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.68 E-value=0.01 Score=61.84 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=73.4
Q ss_pred CCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEcccc
Q 042119 131 PKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEF--------EGRMKFLTRDIM 194 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l--------~~~i~f~~~D~~ 194 (286)
-++|..||+|.+|-.-.. +|+ ..|..|+.+|.++++++.+++.+++. |.+ ..++++. .|
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~-- 383 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD-- 383 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC--
Confidence 478999999998865433 342 37999999999999999987765431 211 1345543 12
Q ss_pred chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
. ..+.+.|+|+.+.. .+.+-|.+++.++-++++|+.+|...+
T Consensus 384 -~-~~~~~aDlViEav~--E~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 384 -Y-RGFKHADVVIEAVF--EDLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred -h-HHhccCCEEeeccc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 34568999997743 466889999999999999999887754
No 298
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.68 E-value=0.0079 Score=62.76 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEcccc
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEF--------EGRMKFLTRDIM 194 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l--------~~~i~f~~~D~~ 194 (286)
+-++|..||+|.+|-.-..... ..|.+|+-+|+++++++.+++.+++. |.+ -.++++. .|
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-- 386 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSA--SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LS-- 386 (714)
T ss_pred ccceEEEECCchHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC--
Confidence 3468999999999865443332 37999999999999999887765421 101 1244442 12
Q ss_pred chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
. .++.+.|+|+.+.. .+.+-|.+++.++-+.++|+++|...+
T Consensus 387 -~-~~~~~aDlViEav~--E~l~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 387 -Y-AGFDNVDIVVEAVV--ENPKVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred -H-HHhcCCCEEEEcCc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1 24568999997743 456889999999999999999887754
No 299
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.66 E-value=0.0091 Score=57.28 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA-NDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
.++++|+..|+|++|+.++.+|+. .|++|+++|.+++. .+.+ +++| ...-+.. .+...+....+.+|+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~Vi~~~~~~~~~~~~a----~~lG-a~~~i~~--~~~~~v~~~~~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKA--FGLRVTVISRSSEKEREAI----DRLG-ADSFLVT--TDSQKMKEAVGTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHH--cCCeEEEEeCChHHhHHHH----HhCC-CcEEEcC--cCHHHHHHhhCCCcEEE
Confidence 478999999999999999999994 78999999988654 3333 3467 2211111 11112222223689999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+.-. + ..+....+.+++||.++.-.
T Consensus 248 d~~G~-----~--~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVSA-----E--HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCCc-----H--HHHHHHHHhhcCCCEEEEEc
Confidence 65321 1 35667788899999998764
No 300
>PLN02827 Alcohol dehydrogenase-like
Probab=96.66 E-value=0.0068 Score=58.05 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=67.1
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhcC--
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQL-- 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~l-- 200 (286)
....++++||..|+|++|+.++.+|+. .|+ .|+++|.+++..+.|++ +| ...-+.... .+..+....+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKT----FG-VTDFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CcEEEcccccchHHHHHHHHHhC
Confidence 345789999999999999999999994 677 59999999998877755 56 221122211 1221111111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~ 240 (286)
+++|+|+-+.-. . ..+....+.+++| |++++-.
T Consensus 262 ~g~d~vid~~G~-----~--~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECVGD-----T--GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECCCC-----h--HHHHHHHHhhccCCCEEEEEC
Confidence 269999865421 1 2456677788998 9998754
No 301
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=96.65 E-value=0.014 Score=55.22 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=65.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++++|+..|+|++|..++.+|++ .|++|+.++.+++..+.+. +++| . +. .+...+...+......+|+||.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~--~G~~vi~~~~~~~~~~~~~---~~~G-a-~~-~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSDKKREEAL---EHLG-A-DD-YLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH---HhcC-C-cE-EecCCChHHHHHhcCCCcEEEE
Confidence 578999999999999999999994 6889999999887654443 3366 2 21 1111121112222236899986
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+. |. ...+....+.+++||+++.-.
T Consensus 251 ~~--g~-----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 TV--PV-----FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CC--Cc-----hHHHHHHHHHhccCCEEEEEC
Confidence 53 21 135666778899999998865
No 302
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=96.62 E-value=0.0082 Score=56.98 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=67.9
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccchhhcC--
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIMEVKEQL-- 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~~~~~l-- 200 (286)
...+++++||..|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+..... |..+....+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FG-ATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCEEEcccccchHHHHHHHHHhC
Confidence 456789999999999999999999994 688 79999999998887765 56 2211222111 111111111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~ 240 (286)
+++|+|+.+. |. ...+....+.++++ |+++.-.
T Consensus 255 ~g~d~vid~~--g~-----~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECI--GN-----VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECC--CC-----hHHHHHHHHhhccCCCeEEEEc
Confidence 2699998653 21 13566777888887 8888754
No 303
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.61 E-value=0.029 Score=50.50 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=75.8
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
-+|...-+..+....++++++||.+|.. -|.|.-.++.-..+.+.|.+++.+|...+---.++++- .+|--+-+|
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~D 130 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILED 130 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----Cceeeeecc
Confidence 3444444444444567899999999997 48888888775557899999999997755555555543 478888899
Q ss_pred ccchhhcC----CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 193 IMEVKEQL----GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 193 ~~~~~~~l----~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.. |... ...|+||.+..- +.+-.-+..+....||+||.+++.
T Consensus 131 Ar~-P~~Y~~lv~~VDvI~~DVaQ---p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 131 ARH-PEKYRMLVEMVDVIFQDVAQ---PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTS-GGGGTTTS--EEEEEEE-SS---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-hHHhhcccccccEEEecCCC---hHHHHHHHHHHHhhccCCcEEEEE
Confidence 875 3322 468999976432 133344666777899999988775
No 304
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0014 Score=56.21 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEcccc-chhhcC-CCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--GRMKFLTRDIM-EVKEQL-GEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--~~i~f~~~D~~-~~~~~l-~~fD 204 (286)
-.+++|+++|+|-.+++.+++|. ..+...|.--|-++++++--++.....- .+ .+.....-+.. +..... ..||
T Consensus 28 ~rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~n~-~s~~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNSNM-ASSLTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhccc-ccccceehhhHHHHhhhHHHHhhCccc
Confidence 34689999999999999999998 5788999999999999999888765431 11 22211111111 111122 3699
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK 242 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~ 242 (286)
+|+.+--+-. .+-...+.+.|+++|+|.|.-++-++.
T Consensus 106 iIlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 106 IILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred EEEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCc
Confidence 9875432211 366778999999999999987776653
No 305
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=96.60 E-value=0.0098 Score=56.41 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=67.3
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hh--hc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VK--EQ 199 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~--~~ 199 (286)
....++++|+..|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+....- +..+ +. ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FG-ATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCcEeccccccchHHHHHHHHhC
Confidence 346789999999999999999999994 677 79999999998888755 45 2111222111 1111 11 12
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~ 240 (286)
.++|+|+.+. |. ...+....+.+++| |.++.-.
T Consensus 253 -~g~d~vid~~--g~-----~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 -GGVDYSFECT--GN-----ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred -CCCCEEEECC--CC-----hHHHHHHHHhcccCCCEEEEEc
Confidence 3699998643 21 13667788889886 8887754
No 306
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.58 E-value=0.0059 Score=61.22 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred CCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccc
Q 042119 130 QPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDI 193 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~ 193 (286)
+-++|.+||+|.+|..-. .+++ .|..|+.+|+++++++.+++.+++ .|.+ -.++++. .|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 79 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL 79 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence 457899999999885533 3344 789999999999999988654331 2211 0234442 232
Q ss_pred cchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 194 ~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.++.+.|+|+.+.. -+.+-|..++..+.+.++|+.+|...
T Consensus 80 ----~~l~~aDlVIEav~--E~~~vK~~vf~~l~~~~~~~~Ilasn 119 (503)
T TIGR02279 80 ----HALADAGLVIEAIV--ENLEVKKALFAQLEELCPADTIIASN 119 (503)
T ss_pred ----HHhCCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence 23457899997642 35578999999999998888776654
No 307
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.55 E-value=0.0052 Score=61.66 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=70.0
Q ss_pred CCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccc
Q 042119 130 QPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDI 193 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~ 193 (286)
+-++|.+||.|.+|.. +..+|+ .|..|+.+|+++++++.+.+.+++ .|.+ -.++++. .|.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 3478999999998854 333444 799999999999999998665542 2210 1235543 232
Q ss_pred cchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 194 ~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.++.+.|+|+.+. .-+.+-|..++.++.+.++|+.++...
T Consensus 82 ----~~~~~aDlViEav--~E~~~vK~~vf~~l~~~~~~~ailasn 121 (507)
T PRK08268 82 ----ADLADCDLVVEAI--VERLDVKQALFAQLEAIVSPDCILATN 121 (507)
T ss_pred ----HHhCCCCEEEEcC--cccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 2345789999764 345678999999999988888888643
No 308
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.55 E-value=0.016 Score=56.13 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=66.8
Q ss_pred cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhc----CCCCCCeEEEE----ccccc
Q 042119 126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASD----AEFEGRMKFLT----RDIME 195 (286)
Q Consensus 126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~----g~l~~~i~f~~----~D~~~ 195 (286)
..++++++|+.+| +|++|+.++.+|+....|+ +|+++|.+++..+.|+++.... | ....++. .|..+
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G---a~~~~i~~~~~~~~~~ 247 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG---IELLYVNPATIDDLHA 247 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC---ceEEEECCCccccHHH
Confidence 3457789999998 7999999999998421233 7999999999999998863221 3 1111221 12111
Q ss_pred hhh---cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 196 VKE---QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 196 ~~~---~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
... .-.+||+|+.+.-. ...+....+.++++|.+++-
T Consensus 248 ~v~~~t~g~g~D~vid~~g~-------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVPV-------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHhCCCCCCEEEEcCCC-------HHHHHHHHHHhccCCeEEEE
Confidence 111 11369998865321 13667788889988876654
No 309
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.54 E-value=0.01 Score=55.57 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC--
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL-- 200 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l-- 200 (286)
.....++++||..|+|++|..++.+|+. .|+ .|+++|.+++..+.+++ +| ...-+.....+..+ +....
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARL--RGAGRIIAVGSRPNRVELAKE----YG-ATDIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CceEecCCCCCHHHHHHHHhCC
Confidence 4456788999999999999999999994 577 59999999988877765 56 22222222222111 11111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+|+++.+.. . ...+....+.|+++|+++.-.
T Consensus 234 ~~~d~vld~~g------~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG------G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC------C-HHHHHHHHHHhhcCCEEEEec
Confidence 35999885432 1 146778899999999998654
No 310
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.52 E-value=0.026 Score=55.49 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----------HhcCCCCCCeEEEEccccchh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-----------ASDAEFEGRMKFLTRDIMEVK 197 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-----------~~~g~l~~~i~f~~~D~~~~~ 197 (286)
.++.+|.+||.|-+|+....... .+.+|+++|+|++.++.-++-. ...| +..+. .+.
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g----~l~~t-~~~---- 71 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR----YLKFT-SEI---- 71 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC----CeeEE-eCH----
Confidence 35689999999999886554433 4689999999999988765110 0111 22232 222
Q ss_pred hcCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 198 EQLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 198 ~~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
......|++|++---. .+.+.=....+.+.+.+++|.+++.++
T Consensus 72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1235789999774321 111233344568889999999999987
No 311
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=96.52 E-value=0.012 Score=55.13 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=69.8
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh-hcC--
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK-EQL-- 200 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~-~~l-- 200 (286)
.....++.+|+..|+|++|..++.+|++ .|+ +|++++.+++..+.+++ +| ...-+.....|..+.. ...
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~l~~~~~~ 239 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKA--AGASKIIVSEPSEARRELAEE----LG-ATIVLDPTEVDVVAEVRKLTGG 239 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEECCCccCHHHHHHHHhCC
Confidence 3456788999999999999999999994 688 89999999998887765 35 2221222222221111 111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.++|+|+.+..- . ..++...+.|++||.++.-.
T Consensus 240 ~~~d~vid~~g~-----~--~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAGV-----Q--ATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCCC-----H--HHHHHHHHhccCCCEEEEEc
Confidence 249999865321 1 35678888999999998754
No 312
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=96.52 E-value=0.013 Score=56.60 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=70.8
Q ss_pred HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccc-hhh--
Q 042119 124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIME-VKE-- 198 (286)
Q Consensus 124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~-~~~-- 198 (286)
.+....++++||..|+|++|+.++.+|+. .|++ |+..|.+++..+.|++ +| . +.+.... .+..+ +..
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~--~Ga~~vi~~d~~~~r~~~a~~----~G-a-~~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQL--LGAAVVIVGDLNPARLAQARS----FG-C-ETVDLSKDATLPEQIEQIL 250 (393)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHHHHH----cC-C-eEEecCCcccHHHHHHHHc
Confidence 34456789999999999999999999994 6776 5667899888888876 46 2 2121111 12211 111
Q ss_pred cCCCcceeehhhhccC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLAALVGM-------SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.-..+|+|+.+.-... ...+....+++..+.+++||++++-.
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 1135999986543200 01122357888889999999999865
No 313
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0049 Score=57.16 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=73.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.-++++|||-+-++. . .|...++|.|++..-+.-|++- | ......+|+..++.....||..+.
T Consensus 44 ~~gsv~~d~gCGngky~~----~--~p~~~~ig~D~c~~l~~~ak~~----~----~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----V--NPLCLIIGCDLCTGLLGGAKRS----G----GDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CCcceeeecccCCcccCc----C--CCcceeeecchhhhhccccccC----C----CceeehhhhhcCCCCCCccccchh
Confidence 348999999999754332 1 3788999999998887776652 3 115677999998887778998876
Q ss_pred hhhccC--ChhHHHHHHHHHHhhccCCcEEEE
Q 042119 209 AALVGM--SKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 209 aalvg~--~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
-+.+++ +...+.++++++.+.++|||..++
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 655522 557788999999999999997555
No 314
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.50 E-value=0.015 Score=53.62 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=59.2
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
++|.+||+|.+|.+.....+ ..|.+|+++|.+++..+.+.+ .| . +.....+. ....+.|+|+++.-
T Consensus 1 m~I~IIG~G~mG~sla~~L~--~~g~~V~~~d~~~~~~~~a~~----~g-~---~~~~~~~~----~~~~~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLR--SLGHTVYGVSRRESTCERAIE----RG-L---VDEASTDL----SLLKDCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHH----CC-C---cccccCCH----hHhcCCCEEEEcCC
Confidence 37999999988865433322 257899999999998877654 35 1 11111221 22457899998854
Q ss_pred ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
. ..-.++++++.+.++|+.++..
T Consensus 67 ~----~~~~~~~~~l~~~l~~~~ii~d 89 (279)
T PRK07417 67 I----GLLLPPSEQLIPALPPEAIVTD 89 (279)
T ss_pred H----HHHHHHHHHHHHhCCCCcEEEe
Confidence 3 3445678889888888866643
No 315
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=96.47 E-value=0.015 Score=55.16 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=66.9
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccchhhc--C
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIMEVKEQ--L 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~~~~~--l 200 (286)
....++++||..|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+..... +..+.... -
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FG-VTEFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcccccchhHHHHHHHHhC
Confidence 356789999999999999999999994 677 89999999998887755 56 2211222110 11111111 1
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~ 240 (286)
+.+|+|+-+. |. ...+....+.+++| |++++-.
T Consensus 256 ~~~d~vid~~--G~-----~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSFECT--GN-----IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEEECC--CC-----hHHHHHHHHHhhcCCCEEEEEC
Confidence 2689988653 21 13556677788996 8888765
No 316
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.44 E-value=0.025 Score=54.87 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=61.9
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccchhhc
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEVKEQ 199 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~~~~ 199 (286)
++|.+||.|-+|+....+.. .|.+|+++|+|++.++..++- +.+.+ .+.++. .|.. ..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~---~~l~~t-~~~~---~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNAT-LDKN---EA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCC---CcEEEe-cchh---hh
Confidence 37999999998876655443 378999999999999988762 11111 122221 1111 12
Q ss_pred CCCcceeehhhhccC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAALVGM-------SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+.|+|+++.--.. +...-..+++.+.+ ++||.+++.++
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S 117 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS 117 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence 246799987743111 11233456778887 68998888876
No 317
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.034 Score=51.92 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=63.2
Q ss_pred CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEccccc
Q 042119 132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAEFE--------GRMKFLTRDIME 195 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~l~--------~~i~f~~~D~~~ 195 (286)
++|.+||+|.+|.+.. .+++ .|.+|+.+|++++..+.+++.++ ..|.+. .++++. .|.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~-- 76 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSL-- 76 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcH--
Confidence 4799999998886533 3444 68899999999999888765322 233110 123332 332
Q ss_pred hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.....+.|+|+.+..- +.+-|..++..+.+..+++ .++..+.
T Consensus 77 -~~a~~~ad~Vi~avpe--~~~~k~~~~~~l~~~~~~~-~ii~sst 118 (308)
T PRK06129 77 -ADAVADADYVQESAPE--NLELKRALFAELDALAPPH-AILASST 118 (308)
T ss_pred -HHhhCCCCEEEECCcC--CHHHHHHHHHHHHHhCCCc-ceEEEeC
Confidence 2234578999977432 2346888888887775554 4555443
No 318
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.40 E-value=0.037 Score=43.52 Aligned_cols=93 Identities=12% Similarity=0.160 Sum_probs=61.1
Q ss_pred EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCcceeehh
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCIFLA 209 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V~~a 209 (286)
|+.+|+|.+|......-+ ..+..|+.+|.|++.++.+++ .| +.++.||..+... .+.++|.|+..
T Consensus 1 vvI~G~g~~~~~i~~~L~--~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK--EGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHH--HTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHH--hCCCEEEEEECCcHHHHHHHh----cc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence 678999977665544444 144599999999999777765 33 5799999986432 33468877755
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.- + ....-.+....+.+.|...++++..
T Consensus 70 ~~---~-d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 TD---D-DEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SS---S-HHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred cC---C-HHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 32 1 2333345556677789999998863
No 319
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.39 E-value=0.026 Score=56.40 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=63.4
Q ss_pred CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCC--C--CCCeEEEEccccchhhc
Q 042119 132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAE--F--EGRMKFLTRDIMEVKEQ 199 (286)
Q Consensus 132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~--l--~~~i~f~~~D~~~~~~~ 199 (286)
++|.+||+|.+|..- ..+++ .|.+|+.+|++++..+...+..+ .+.. + ..++++. .|. ...
T Consensus 5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~---~ea 77 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL---AEA 77 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH---HHH
Confidence 589999999888653 23343 68899999999999876543221 1110 0 0124432 222 233
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
..+.|+|+.+.. -+.+-|..++..+.+.++|+. ++..+..|
T Consensus 78 ~~~aD~Vieavp--e~~~vk~~l~~~l~~~~~~~~-iI~SsTsg 118 (495)
T PRK07531 78 VAGADWIQESVP--ERLDLKRRVLAEIDAAARPDA-LIGSSTSG 118 (495)
T ss_pred hcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCc-EEEEcCCC
Confidence 467899997632 233458889999988877775 44544444
No 320
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=96.39 E-value=0.017 Score=53.20 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=68.0
Q ss_pred cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119 126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE 202 (286)
Q Consensus 126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~ 202 (286)
....++++||..| +|++|..++.+|+. .|++|++++.+++..+.+++ +| ...-+.....|..+....+ .+
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~----~G-a~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKE----LG-FDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeCCCccHHHHHHHHCCCC
Confidence 3457889999999 69999999999994 78999999999988777665 56 2222222222221111111 36
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-. +| . ..++...+.++++|.++.-.
T Consensus 212 vd~vld~--~g----~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDN--VG----G--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEEC--CC----H--HHHHHHHHhhccCCEEEEEc
Confidence 9998843 22 2 35678889999999988643
No 321
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.36 E-value=0.02 Score=52.71 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=67.3
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-h-hhcCCCcce
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-V-KEQLGEYDC 205 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~-~~~l~~fD~ 205 (286)
..++.+||..|+|+.|..++.+|++ .|.+|++++.+++..+.+++ .| ...-+.....+..+ + ...-..+|+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~--~G~~V~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKA--MGAAVIAVDIKEEKLELAKE----LG-ADEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----hC-CCEEEcCCCcCHHHHHHHhcCCCceE
Confidence 5778999999999889999999994 78999999999998877755 45 21111111111111 0 112236999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+.+... ...++++.+.|++||.++.-.
T Consensus 236 vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVGT-------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCCC-------HHHHHHHHHHhhcCCEEEEEC
Confidence 8854321 246778899999999998764
No 322
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=96.34 E-value=0.022 Score=53.06 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=63.2
Q ss_pred CEEEEecc-CCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceee
Q 042119 132 KKVAFVGS-GPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIF 207 (286)
Q Consensus 132 ~~VL~IG~-G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~ 207 (286)
++||..|+ |++|..++.+|++ .|+ +|++++.+++..+.+++. +| ...-+.....|..+....+ .++|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~~---lG-a~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKSE---LG-FDAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHh---cC-CcEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 89999997 9999999999994 688 899999998877766653 56 2221222212221111111 4699998
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+. | . ..+....+.|++||+++.-.
T Consensus 230 d~~--g----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNV--G----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECC--C----c--HHHHHHHHHhccCCEEEEEe
Confidence 542 2 1 13467888999999998643
No 323
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=96.34 E-value=0.024 Score=52.90 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=68.5
Q ss_pred CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC--CC
Q 042119 127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL--GE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l--~~ 202 (286)
...++++||..|+ |++|..++.+|+. .|++|++++.+++..+.+++. +| ...-+.+... |..+..... .+
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~---lG-a~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNK---LG-FDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHh---cC-CceeEEcCCcccHHHHHHHhCCCC
Confidence 4678999999997 8899999999994 799999999998887776653 46 2222222111 221111111 46
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-+ +| . ..+....+.++++|.++.-.
T Consensus 222 vd~v~d~--~g----~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 222 IDIYFDN--VG----G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cEEEEEC--CC----H--HHHHHHHHHhccCcEEEEec
Confidence 9999854 23 2 35678889999999998653
No 324
>PRK10083 putative oxidoreductase; Provisional
Probab=96.33 E-value=0.021 Score=53.05 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=66.5
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC-C
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG-E 202 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~-~ 202 (286)
.....++++|+..|+|++|..++.+|++ ..|++ |+++|.+++..+.+++ +| ...-+.....+..+.....+ +
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~-~~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKG-VYNVKAVIVADRIDERLALAKE----SG-ADWVINNAQEPLGEALEEKGIK 228 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHhcCCCC
Confidence 3456788999999999999999999983 34774 8889999998877765 45 21112222222212111111 3
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-+. | . ...+....+.++++|+++.-.
T Consensus 229 ~d~vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 229 PTLIIDAA--C----H-PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCEEEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 46777543 2 1 135677888999999998865
No 325
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.31 E-value=0.017 Score=50.99 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=66.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-h-hhcCCCccee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-V-KEQLGEYDCI 206 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~-~~~l~~fD~V 206 (286)
.++++||..|+|++|..++.+++. .|.+|++++.+++..+.+++ .| ...-+.....+... + ....+.+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKE----LG-ADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----hC-CceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 678999999999888888888884 78999999999988777654 34 11111111111111 0 1122469999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+.+... . ..+..+.+.|+++|.++.-..
T Consensus 206 i~~~~~-----~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 206 IDAVGG-----P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EECCCC-----H--HHHHHHHHhcccCCEEEEEcc
Confidence 865321 1 356778889999999987653
No 326
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=96.26 E-value=0.026 Score=52.26 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=68.5
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccc-cchhhcCCCc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDI-MEVKEQLGEY 203 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~-~~~~~~l~~f 203 (286)
....++.+||..|+|++|..++.+|++ ..|++|++++.+++..+.+++ +| ...-+.... .+. ..+....+++
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~-~~g~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKN-VFNAKVIAVDINDDKLALAKE----VG-ADLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHH----cC-CcEEecccccccHHHHHHHhcCCC
Confidence 456788999999999999999999983 358999999999998887754 45 211111111 111 1111122358
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|.++.+..- ...++...+.++++|.++.-.
T Consensus 232 d~vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 232 HAAVVTAVA-------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cEEEEeCCC-------HHHHHHHHHhccCCCEEEEEe
Confidence 866655421 146788899999999988753
No 327
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.24 E-value=0.036 Score=54.24 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=62.3
Q ss_pred CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHH------------HHH---hcCCCCCCeEEEEccccc
Q 042119 132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARS------------IVA---SDAEFEGRMKFLTRDIME 195 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~---~~g~l~~~i~f~~~D~~~ 195 (286)
++|.+||.|-+|.+... |++ .|.+|+++|+|++.++.-++ ++. +.| +..+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g----~l~~~------ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG----YLRAT------ 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC----ceeee------
Confidence 68999999988876444 444 68999999999998885221 111 112 12221
Q ss_pred hhhcCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 196 VKEQLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.+....|+||++.-.. .+...-..+++.+.+.+++|.+++..+.
T Consensus 71 --~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 --TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred --cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 1123679999775432 1123445677889999999999988873
No 328
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.22 E-value=0.049 Score=51.37 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=69.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA-NDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
+.+.||..||+|..|.+.........-..+++-+|++++. -..+..+-.... +..++.+..+|. .++.+.|+|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~----~~~~~adivI 78 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDY----SDCKDADLVV 78 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCH----HHhCCCCEEE
Confidence 5678999999999888877655421222379999998774 477777766665 334566665443 3457899998
Q ss_pred hhhhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119 208 LAALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS 240 (286)
Q Consensus 208 ~aalv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~ 240 (286)
+.+-+ ||+..+ ...++.++...+ .|+|.+++-+
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 87755 444333 334445544433 3788877754
No 329
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.21 E-value=0.022 Score=59.32 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=72.2
Q ss_pred CEEEEeccCCChhhHHHH-HhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccccc
Q 042119 132 KKVAFVGSGPMPLTSIIM-AKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDIME 195 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~l-A~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~~~ 195 (286)
++|..||+|.+|-.-..+ |. ..|..|+.+|+|+++++.+++.+.+ .|.+ ..+|++. .|.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-- 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-- 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence 689999999998764433 32 2689999999999999998766532 1211 1345543 222
Q ss_pred hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+.+.|+|+.+.. .+.+-|.+++.++-+.++|+.+|...+
T Consensus 380 --~~~~~adlViEav~--E~l~~K~~v~~~l~~~~~~~~ilasnT 420 (699)
T TIGR02440 380 --RGFKDVDIVIEAVF--EDLALKHQMVKDIEQECAAHTIFASNT 420 (699)
T ss_pred --HHhccCCEEEEecc--ccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 24578999997643 456899999999999999998887654
No 330
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.20 E-value=0.048 Score=54.37 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=66.3
Q ss_pred CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHH---HhcCC-------CCCCeEEEEccccchhhcC
Q 042119 132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIV---ASDAE-------FEGRMKFLTRDIMEVKEQL 200 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~---~~~g~-------l~~~i~f~~~D~~~~~~~l 200 (286)
++|..||+|-+|++.- .||+ ...|.+|+++|+|++.++.-++-. ...|+ ...+.+|. .|. ...+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~---~~~i 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDV---EKHV 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCH---HHHH
Confidence 5899999999887654 4554 234688999999999988743210 01110 01234342 222 2234
Q ss_pred CCcceeehhhhcc-----------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVG-----------MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg-----------~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
...|++|++.-.. .+...-..+.+.|.+++++|.++++++
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S 127 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 5689998874211 122345678899999999999999887
No 331
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=96.19 E-value=0.024 Score=52.64 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=65.7
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
....++.+||..|+|.+|..++.+|++ .|. +|++++.+++..+.+++ .| ...-+.....+..+.......+|
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~--~G~~~v~~~~~s~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARR--AGAAEIVATDLADAPLAVARA----MG-ADETVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CCEEEcCCchhhhhhhccCCCcc
Confidence 333478999999999889999999984 687 89999999888776655 35 21111111111112222223599
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+|+-+... ...++.+.+.|+++|+++.-
T Consensus 234 ~vld~~g~-------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 234 VVFEASGA-------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEEECCCC-------HHHHHHHHHHHhcCCEEEEE
Confidence 99865321 13567888999999998864
No 332
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.17 E-value=0.0088 Score=54.20 Aligned_cols=82 Identities=12% Similarity=0.263 Sum_probs=50.5
Q ss_pred CCCCCC--EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH---HHhcCCC----CCCeEEEEccccchh
Q 042119 127 GVVQPK--KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI---VASDAEF----EGRMKFLTRDIMEVK 197 (286)
Q Consensus 127 ~~~~~~--~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~---~~~~g~l----~~~i~f~~~D~~~~~ 197 (286)
+++++. +|||.=+| +|-.|+.+|. .|++|++++.||-...+-+.= ....... ..||+++++|..+..
T Consensus 70 Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L 145 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL 145 (234)
T ss_dssp T-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred CCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence 455553 99999999 8999999997 589999999999876665543 3332211 248999999998866
Q ss_pred h-cCCCcceeehhhhc
Q 042119 198 E-QLGEYDCIFLAALV 212 (286)
Q Consensus 198 ~-~l~~fD~V~~aalv 212 (286)
. ....||+|+++-+.
T Consensus 146 ~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 146 RQPDNSFDVVYFDPMF 161 (234)
T ss_dssp CCHSS--SEEEE--S-
T ss_pred hhcCCCCCEEEECCCC
Confidence 5 23579999998543
No 333
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.02 Score=53.20 Aligned_cols=95 Identities=20% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
-.+|..+|.|-+|-+-....+.......|+|.|.+.+..+.|.+ +| +.+. ..+.. ........|+|+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg-v~d~----~~~~~-~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG-VIDE----LTVAG-LAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cC-cccc----cccch-hhhhcccCCEEEEec
Confidence 36899999999988766555544445566888888777766665 45 2221 11111 122335689999986
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
-+ ..-.++++++.+.++||..|+=-
T Consensus 73 Pi----~~~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 73 PI----EATEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred cH----HHHHHHHHHhcccCCCCCEEEec
Confidence 55 56678999999999999887653
No 334
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.15 E-value=0.017 Score=54.42 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=71.6
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEccccch---------hhcC
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFLTRDIMEV---------KEQL 200 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~---------~~~l 200 (286)
-++|..||+|.+|-.-...+. .-|..|+-+|+++++++.+++.+++. ..+..+-.+-..+.... ..++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A--~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l 80 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFA--LAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL 80 (307)
T ss_pred ccEEEEEcccchhHHHHHHHh--hcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh
Confidence 368999999999865444433 36699999999999999998876543 00001100100000000 1145
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+.|+|+.+.. .+.+-|.++++++-++.+|+++|.-.+
T Consensus 81 ~~~DlVIEAv~--E~levK~~vf~~l~~~~~~~aIlASNT 118 (307)
T COG1250 81 KDADLVIEAVV--EDLELKKQVFAELEALAKPDAILASNT 118 (307)
T ss_pred ccCCEEEEecc--ccHHHHHHHHHHHHhhcCCCcEEeecc
Confidence 67999997754 356889999999999999999988764
No 335
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.14 E-value=0.03 Score=52.53 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-----C
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-----G 201 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-----~ 201 (286)
.+.++.-.+|.==|.+|-|-..|.+ ....++++++|.||.|++.|++.+...+ +|+++++++-.++...+ +
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i~ 95 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGIG 95 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCCC
Confidence 5577788888777777999888887 3445779999999999999999988766 69999999766554432 3
Q ss_pred Ccceeehhhhc
Q 042119 202 EYDCIFLAALV 212 (286)
Q Consensus 202 ~fD~V~~aalv 212 (286)
.+|-|+++-.|
T Consensus 96 ~vDGiL~DLGV 106 (314)
T COG0275 96 KVDGILLDLGV 106 (314)
T ss_pred ceeEEEEeccC
Confidence 56766665444
No 336
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=96.09 E-value=0.031 Score=52.91 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=70.5
Q ss_pred cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---
Q 042119 126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--- 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--- 201 (286)
...+++++||..| +|..|..++.||++ .|++++++--+++..+++++ +| -..-+++...|..+...++.
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~--~G~~~v~~~~s~~k~~~~~~----lG-Ad~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKA--LGATVVAVVSSSEKLELLKE----LG-ADHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHh----cC-CCEEEcCCcccHHHHHHHHcCCC
Confidence 3467899999999 88899999999994 66677777777766555544 56 23345566666554443332
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
++|+|+... | ...+....+.|++||+++.-..
T Consensus 211 gvDvv~D~v--G------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 211 GVDVVLDTV--G------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CceEEEECC--C------HHHHHHHHHHhccCCEEEEEec
Confidence 599999542 2 1356667888899999988653
No 337
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.09 E-value=0.0037 Score=50.04 Aligned_cols=88 Identities=19% Similarity=0.225 Sum_probs=59.8
Q ss_pred ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCcceeehhhhccCChhH
Q 042119 142 MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEYDCIFLAALVGMSKEE 218 (286)
Q Consensus 142 lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~fD~V~~aalvg~~~~~ 218 (286)
+|+.++.+|+. .|++|+++|.+++..+.+++ +|. ..-+.....|..+...++ .++|+||.+.-.
T Consensus 2 vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~----~Ga-~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~------ 68 (130)
T PF00107_consen 2 VGLMAIQLAKA--MGAKVIATDRSEEKLELAKE----LGA-DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS------ 68 (130)
T ss_dssp HHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH----TTE-SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS------
T ss_pred hHHHHHHHHHH--cCCEEEEEECCHHHHHHHHh----hcc-cccccccccccccccccccccccceEEEEecCc------
Confidence 67889999994 66999999999999888776 451 111111112222222122 369999977532
Q ss_pred HHHHHHHHHhhccCCcEEEEeecCc
Q 042119 219 KLTILGHIRKYMKDGGILLVRSAKG 243 (286)
Q Consensus 219 k~~vl~~l~~~l~pgg~lv~r~~~g 243 (286)
...++...+.++|||++++-...+
T Consensus 69 -~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 -GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -HHHHHHHHHHhccCCEEEEEEccC
Confidence 258888999999999999987554
No 338
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.08 E-value=0.046 Score=49.11 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=67.2
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
....++.+|+..|+|++|..++.+|++ .|.+ |++++.+++..+.+++. | ..+.+.....+ .. .-.++|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~~----g-~~~~~~~~~~~---~~-~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEAL----G-PADPVAADTAD---EI-GGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHHc----C-CCccccccchh---hh-cCCCCC
Confidence 345788999999999999999999994 6777 99999999988777764 3 11222111111 11 223699
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+.+... . ..+....+.|+++|.++.-.
T Consensus 162 ~vl~~~~~-----~--~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGS-----P--SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccCC-----h--HHHHHHHHHhcCCcEEEEEe
Confidence 98865321 1 36677888999999998654
No 339
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.05 E-value=0.04 Score=49.64 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=65.0
Q ss_pred CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEE--eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNF--DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~i--Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
..+++||.||+|..+..-+ .|.+ .|++||.| +++++..+++. . .+++++..+.. +.++.++++
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l~~-----~----~~i~~~~r~~~--~~dl~g~~L 88 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDLKK-----Y----GNLKLIKGNYD--KEFIKDKHL 88 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHh-----C----CCEEEEeCCCC--hHHhCCCcE
Confidence 4678999999998766533 3333 68888888 77777655432 2 36899887753 345678999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEE-eecCcceeeecccC
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLV-RSAKGARAFLYPVV 252 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~-r~~~g~r~~lyp~v 252 (286)
||.+.- ++ ++=+.+++..+.-+.++. .+......|..|.+
T Consensus 89 ViaATd------D~-~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAi 129 (223)
T PRK05562 89 IVIATD------DE-KLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQ 129 (223)
T ss_pred EEECCC------CH-HHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeE
Confidence 997632 22 344455555555344443 34344566888854
No 340
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.99 E-value=0.036 Score=52.03 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=57.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++++|+.||+|++|.......+. ..+.+|+.+|++++.. +++.++.| . .... ..++...+.++|+||.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~-~g~~~V~v~~r~~~ra---~~la~~~g-~----~~~~--~~~~~~~l~~aDvVi~ 244 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAA-KGVAEITIANRTYERA---EELAKELG-G----NAVP--LDELLELLNEADVVIS 244 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHH-cCCCEEEEEeCCHHHH---HHHHHHcC-C----eEEe--HHHHHHHHhcCCEEEE
Confidence 478999999999998876665552 2346899999998653 23333455 1 2222 1223333467899997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+.-.. .. ...+..+.+....++.+++.-+
T Consensus 245 at~~~---~~-~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 245 ATGAP---HY-AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCC---ch-HHHHHHHHhhCCCCCeEEEEeC
Confidence 75431 12 3444444443333566776543
No 341
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.99 E-value=0.0063 Score=59.68 Aligned_cols=101 Identities=26% Similarity=0.366 Sum_probs=61.3
Q ss_pred EEEEeccCCChhhHHH---HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEE-EccccchhhcCCCccee
Q 042119 133 KVAFVGSGPMPLTSII---MAKH-HLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFL-TRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~---lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~-~~D~~~~~~~l~~fD~V 206 (286)
+|..||+|..|.+... ++.. ...|.+|+-+|++++.++...+.+++. .......++. +.|. ...+.+.|+|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~---~eal~~AD~V 78 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDR---REALDGADFV 78 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCH---HHHhcCCCEE
Confidence 7999999998887444 4422 357789999999999888776654432 0011223443 4453 3455688999
Q ss_pred ehhhhccCC--------hhHHHHHHHHHHhhccCCcEE
Q 042119 207 FLAALVGMS--------KEEKLTILGHIRKYMKDGGIL 236 (286)
Q Consensus 207 ~~aalvg~~--------~~~k~~vl~~l~~~l~pgg~l 236 (286)
+.+..++.. .+.|..+++++.+.+.|||.+
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~ 116 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF 116 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHH
Confidence 988764221 123444555555555555543
No 342
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=95.97 E-value=0.045 Score=50.30 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=68.2
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
.....++.+|+..|+|.+|..++.+|+. .|.+|++++.+++..+.+++ +| ....+.+ .+. .....+|
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~~~~-----~~~-~~~~~~d 216 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARR----LG-VETVLPD-----EAE-SEGGGFD 216 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cC-CcEEeCc-----ccc-ccCCCCC
Confidence 4456788999999999999999999984 78999999999998887776 46 2221111 111 1224699
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+-+. | . ...++...+.++++|.++...
T Consensus 217 ~vid~~--g----~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 217 VVVEAT--G----S-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EEEECC--C----C-hHHHHHHHHHhhcCCEEEEEc
Confidence 998643 2 1 235667788899999998743
No 343
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.97 E-value=0.016 Score=54.68 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh------cC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE------QL 200 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~------~l 200 (286)
.+.++...+|-=-|.+|-|...|.+ +++++++|+|.||+|++.|++.+...+ +|+.|+.++-.++.. .+
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHTTTT
T ss_pred CcCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHccCC
Confidence 3577788899766667999888876 577999999999999999999866544 799999998776543 22
Q ss_pred CCcceeehhhh
Q 042119 201 GEYDCIFLAAL 211 (286)
Q Consensus 201 ~~fD~V~~aal 211 (286)
..+|-|+++-.
T Consensus 92 ~~~dgiL~DLG 102 (310)
T PF01795_consen 92 NKVDGILFDLG 102 (310)
T ss_dssp S-EEEEEEE-S
T ss_pred CccCEEEEccc
Confidence 36777776643
No 344
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.95 E-value=0.034 Score=49.23 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.+++||.||+|..+...+.... ..|++|+.++.+.. +.-+++ ...| +++++.++.. ..++.++|+|+.+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l-~~~~----~i~~~~~~~~--~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLL-AEQG----GITWLARCFD--ADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHH-HHcC----CEEEEeCCCC--HHHhCCcEEEEEC
Confidence 4689999999987776443332 37899999987654 222222 2223 6899988864 3456789999866
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEe-ecCcceeeecccC
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR-SAKGARAFLYPVV 252 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r-~~~g~r~~lyp~v 252 (286)
--. .+.. ..+....+.-|+++-. +......|..|.+
T Consensus 77 t~d---~~ln----~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~ 113 (205)
T TIGR01470 77 TDD---EELN----RRVAHAARARGVPVNVVDDPELCSFIFPSI 113 (205)
T ss_pred CCC---HHHH----HHHHHHHHHcCCEEEECCCcccCeEEEeeE
Confidence 321 1222 3444444455666643 2333456777743
No 345
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.91 E-value=0.051 Score=49.90 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=56.9
Q ss_pred CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC---CCeEEEEccccchhhcCCCcceee
Q 042119 132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE---GRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~---~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
++|+.||+|.+|..... |++ .|.+|+.+|.+++.++..++ .| +. ...... ....+-..+...+|+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~----~g-~~~~~~~~~~~-~~~~~~~~~~~~~d~vi 71 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNE----NG-LRLEDGEITVP-VLAADDPAELGPQDLVI 71 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHH----cC-CcccCCceeec-ccCCCChhHcCCCCEEE
Confidence 47999999998864333 333 67899999998877654443 24 21 111110 00111112236799999
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
++.-. .+-..+++.+.+.+.++..++.
T Consensus 72 la~k~----~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 72 LAVKA----YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred Eeccc----ccHHHHHHHHhhhcCCCCEEEE
Confidence 77321 2445788899988888766654
No 346
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.91 E-value=0.0091 Score=59.03 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=79.1
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-------cCC
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-------QLG 201 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-------~l~ 201 (286)
..+.++|.||=|.+++.+..... +|.+++|++++||++++.|++.+.-.. ++|.+.+..|+.+... +..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhcccccc
Confidence 45567888887777777666554 789999999999999999999976544 2467788888865433 223
Q ss_pred Ccceeehhh----hccCChhH----HHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAA----LVGMSKEE----KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aa----lvg~~~~~----k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.||+++++. ..||..++ -..++..+...+.|.|.+++.-
T Consensus 370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 699998753 12443322 3468889999999999998753
No 347
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.91 E-value=0.053 Score=50.96 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=67.0
Q ss_pred hcCC-CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc----chhh
Q 042119 125 ENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM----EVKE 198 (286)
Q Consensus 125 ~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~----~~~~ 198 (286)
+... .++.+||..|+|++|..++.+|++ .|+ +|++++.+++..+.++ ++| ...-+.....+.. .+..
T Consensus 171 ~~~~~~~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~ 243 (361)
T cd08231 171 RAGPVGAGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAR----EFG-ADATIDIDELPDPQRRAIVRD 243 (361)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHH----HcC-CCeEEcCcccccHHHHHHHHH
Confidence 3343 378999999999999999999994 688 9999999988776664 356 2211122111110 1111
Q ss_pred --cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 --QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 --~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+-..+|+|+-+..- ...+....+.|+++|.++.-.
T Consensus 244 ~~~~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 244 ITGGRGADVVIEASGH-------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred HhCCCCCcEEEECCCC-------hHHHHHHHHHhccCCEEEEEc
Confidence 12369999855321 135667788999999998754
No 348
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=95.90 E-value=0.024 Score=52.54 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCCEEEEe--ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcc
Q 042119 130 QPKKVAFV--GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYD 204 (286)
Q Consensus 130 ~~~~VL~I--G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD 204 (286)
++.+++.+ |+|++|..++.+|+. .|++|++++.+++..+.+++ +| ...-+.....|..+.... -.++|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA--DGIKVINIVRRKEQVDLLKK----IG-AEYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CcEEEECCCccHHHHHHHHhCCCCCc
Confidence 45566664 899999999999994 78999999999988877766 56 221122222222111111 13589
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+-+. | . .......+.+++||+++.-.
T Consensus 215 ~vid~~--g----~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDAV--G----G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEECC--C----c--HHHHHHHHhhCCCCEEEEEE
Confidence 998543 2 1 12345677889999988754
No 349
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.021 Score=54.60 Aligned_cols=109 Identities=15% Similarity=0.208 Sum_probs=70.1
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Cc
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EY 203 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~f 203 (286)
.-.|++|||+|.||+ |.++-+....|.. .++.++-||..-+....+.+..+ . .+-.+..+|+..-..++. .|
T Consensus 111 dfapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t-~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 111 DFAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-T-EKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred CcCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-c-ccCCCCCCccchhccCCCcccee
Confidence 357788999999973 4554443244543 46777888888887777766655 2 334555666644333332 57
Q ss_pred ceeehhh-hccC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAA-LVGM-SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aa-lvg~-~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|++++.. ++.+ ...+-...+++++..++|||.+++-.
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 8777543 4433 22233558999999999999988854
No 350
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.88 E-value=0.07 Score=51.89 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=62.5
Q ss_pred CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHH------------HHHh-cCCCCCCeEEEEccccchh
Q 042119 132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARS------------IVAS-DAEFEGRMKFLTRDIMEVK 197 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~-~g~l~~~i~f~~~D~~~~~ 197 (286)
++|.+||+|.+|.+... |++ .|.+|+++|++++.++.-++ ++.+ .. ..++++. .|..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~--~g~l~~~-~~~~--- 71 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA--AGRLRAT-TDYE--- 71 (411)
T ss_pred CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh--cCCeEEE-CCHH---
Confidence 37999999998876443 343 78899999999998765432 1111 00 0234432 2322
Q ss_pred hcCCCcceeehhhhccC------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 198 EQLGEYDCIFLAALVGM------SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 198 ~~l~~fD~V~~aalvg~------~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
....+.|+||++.--.. +...-..+++.+.+.+++|.+++..+
T Consensus 72 ~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 72 DAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 22357899997743211 11234567788888999998888776
No 351
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.12 Score=46.00 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=100.1
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
.+|+..-...|..+.++++++||.+|.- -|.|.-.++. ..+.+.|.+++.+|....---.++++- .+|--+-+|
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAa-sGTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~D 132 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAA-SGTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILED 132 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeecc-CCCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecc
Confidence 4666666667766778999999999996 5888888887 455688999999998876555555543 468888899
Q ss_pred ccchhhcC----CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe----ecC---cceeeecccCCcccccCcE
Q 042119 193 IMEVKEQL----GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR----SAK---GARAFLYPVVVEHDLLDFE 261 (286)
Q Consensus 193 ~~~~~~~l----~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r----~~~---g~r~~lyp~v~~~~l~gf~ 261 (286)
+.. |... ...|+||.+..- +.+-.=+..+....||+||.+++. +-+ ..++.+-..++.-.-.+|+
T Consensus 133 A~~-P~~Y~~~Ve~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~ 208 (231)
T COG1889 133 ARK-PEKYRHLVEKVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFE 208 (231)
T ss_pred cCC-cHHhhhhcccccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCce
Confidence 854 3322 368999976432 123333556778899999965553 211 1111111111111115799
Q ss_pred EEEEec--CcccceeeeEEEee
Q 042119 262 VLSAVH--PNDDVINSVVLVRN 281 (286)
Q Consensus 262 ~~~~~~--P~~~vinsvi~~r~ 281 (286)
++.+.+ |.+. -...|+++.
T Consensus 209 i~e~~~LePye~-DH~~i~~~~ 229 (231)
T COG1889 209 ILEVVDLEPYEK-DHALIVAKY 229 (231)
T ss_pred eeEEeccCCccc-ceEEEEEee
Confidence 998877 5443 233455544
No 352
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.82 E-value=0.044 Score=50.22 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=55.3
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhc
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALV 212 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalv 212 (286)
+|.+||+|.+|.+-..-.+......+|+++|++++..+.+++ .| ..+. +.+..+ ..+.|+|+++.-.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g-~~~~----~~~~~~----~~~aD~Vilavp~ 68 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LG-LVDE----IVSFEE----LKKCDVIFLAIPV 68 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CC-CCcc----cCCHHH----HhcCCEEEEeCcH
Confidence 799999998886543322211122489999999998776543 56 2211 123222 2248999987532
Q ss_pred cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 213 GMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 213 g~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
..-.+++.++.+ ++||.+|+-
T Consensus 69 ----~~~~~~~~~l~~-l~~~~iv~d 89 (275)
T PRK08507 69 ----DAIIEILPKLLD-IKENTTIID 89 (275)
T ss_pred ----HHHHHHHHHHhc-cCCCCEEEE
Confidence 455678888888 888876653
No 353
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.81 E-value=0.063 Score=46.93 Aligned_cols=76 Identities=22% Similarity=0.401 Sum_probs=48.8
Q ss_pred EEEEeccCCChhhHHHHHh----hcCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 133 KVAFVGSGPMPLTSIIMAK----HHLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~----~~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
||.+||.|..-++-..+.. ..+++.+++-+|+|++.++. |++++++.| ..+++... ++....+.+.|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~---~~~~v~~t--td~~eAl~gAD 75 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG---ADLKVEAT--TDRREALEGAD 75 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT---TSSEEEEE--SSHHHHHTTES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC---CCeEEEEe--CCHHHHhCCCC
Confidence 6899999986665444322 14678899999999998874 555666777 34555432 22344567899
Q ss_pred eeehhhhcc
Q 042119 205 CIFLAALVG 213 (286)
Q Consensus 205 ~V~~aalvg 213 (286)
+|+...-+|
T Consensus 76 fVi~~irvG 84 (183)
T PF02056_consen 76 FVINQIRVG 84 (183)
T ss_dssp EEEE---TT
T ss_pred EEEEEeeec
Confidence 999887775
No 354
>PLN02256 arogenate dehydrogenase
Probab=95.81 E-value=0.061 Score=50.55 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=61.5
Q ss_pred hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119 112 YVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR 191 (286)
Q Consensus 112 y~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~ 191 (286)
|+.-.+.|.. ...+.+|.+||+|.+|.+-....+ ..|.+|+++|.++. . +.....| . .+ ..
T Consensus 23 ~~~~~~~~~~------~~~~~kI~IIG~G~mG~slA~~L~--~~G~~V~~~d~~~~-~----~~a~~~g-v----~~-~~ 83 (304)
T PLN02256 23 YESRLQEELE------KSRKLKIGIVGFGNFGQFLAKTFV--KQGHTVLATSRSDY-S----DIAAELG-V----SF-FR 83 (304)
T ss_pred hHhHHhHhhc------cCCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECccH-H----HHHHHcC-C----ee-eC
Confidence 4555555533 246679999999988765333332 25679999999963 2 3333456 2 22 23
Q ss_pred cccchhhcCCCcceeehhhhccCChhHHHHHHHHH-HhhccCCcEEEE
Q 042119 192 DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHI-RKYMKDGGILLV 238 (286)
Q Consensus 192 D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l-~~~l~pgg~lv~ 238 (286)
|..++.. .+.|+|+++.-. ..-.++++++ ...++||.+++-
T Consensus 84 ~~~e~~~--~~aDvVilavp~----~~~~~vl~~l~~~~l~~~~iviD 125 (304)
T PLN02256 84 DPDDFCE--EHPDVVLLCTSI----LSTEAVLRSLPLQRLKRSTLFVD 125 (304)
T ss_pred CHHHHhh--CCCCEEEEecCH----HHHHHHHHhhhhhccCCCCEEEe
Confidence 4333221 358999987543 3445677787 567888875543
No 355
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.79 E-value=0.085 Score=49.49 Aligned_cols=101 Identities=23% Similarity=0.249 Sum_probs=64.2
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
++|..||+|..|.+....... .| .+|+.+|++++..+ .|..+..... ......+..+|. .++.+.|+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~----~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDY----ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCH----HHhCCCCEEEE
Confidence 379999999988887665442 45 68999999988765 5666655443 223344444543 34678999998
Q ss_pred hhhcc----CChh--------HHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVG----MSKE--------EKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg----~~~~--------~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++-.. ++.. .-.++.+.+.+. .|.|.+++.+
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 87652 2211 122445555553 5778887764
No 356
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.77 E-value=0.016 Score=57.68 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.+++|+.||.|.+|......++ ..|++|+.+|+||.....|.. .| . ++ .+. ...+...|+|+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G-~----~~--~~l---eell~~ADIVI~ 315 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EG-Y----QV--VTL---EDVVETADIFVT 315 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cC-c----ee--ccH---HHHHhcCCEEEE
Confidence 57899999999999988888877 478999999999876543322 35 1 22 232 223457999987
Q ss_pred hhhccCChhHHHHHH-HHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTIL-GHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl-~~l~~~l~pgg~lv~r~ 240 (286)
+. | .+ .++ .+..+.||||++|+--.
T Consensus 316 at--G----t~-~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 316 AT--G----NK-DIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CC--C----cc-cccCHHHHhccCCCcEEEEcC
Confidence 63 2 22 355 37788899999988753
No 357
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.75 E-value=0.023 Score=57.47 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE 166 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~ 166 (286)
+..+++|+.||+||.|+++...+++ .|.+|+.+|..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 4678999999999999999988873 689999999643
No 358
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.75 E-value=0.075 Score=54.67 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=68.3
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI 206 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V 206 (286)
..+|+.+|+|..|......-+ ..|..++.+|.|++.++.+++ .| ...+.||+.+.. ...++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 479999999999886544333 267899999999999998876 45 467889998742 234578887
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+.+.- + .+....+-...|.+.|+..+++|..
T Consensus 469 vv~~~---d-~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 469 INAID---D-PQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEeC---C-HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 75431 2 3333444456667789999999863
No 359
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.75 E-value=0.052 Score=50.51 Aligned_cols=90 Identities=16% Similarity=0.257 Sum_probs=58.6
Q ss_pred CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
++|.+||+|.+|.+. ..|++ .|.+|+++|++++.++..++ .|. . . ..+..++...+...|+||++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~----~g~-~-~----~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKE----DRT-T-G----VANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cCC-c-c----cCCHHHHHhhcCCCCEEEEEc
Confidence 379999999888643 23333 68899999999987666554 341 1 1 133334333345679998763
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
-- ..-..+++++...+++|.+++-
T Consensus 68 p~----~~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 68 PH----GIVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred Cc----hHHHHHHHHHHhhCCCCCEEEE
Confidence 21 2345678899999988876654
No 360
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.74 E-value=0.066 Score=50.64 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceee
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAAND-VARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~ 207 (286)
.++|..||+|.+|.+....+. ..| ..++-+|++++... .+..+...........++.. +|. .++.+.|+|+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~----~~l~~aDiVI 79 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY----EDIAGSDVVI 79 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH----HHhCCCCEEE
Confidence 479999999999887766544 355 47999999998531 12222222221122345553 553 3557899999
Q ss_pred hhhhcc----C-------------ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 208 LAALVG----M-------------SKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 208 ~aalvg----~-------------~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.+.++ + +.+-+.++.+.+.+.. |.|.+++-
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~ 127 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVI 127 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 866431 1 2233666777777665 66655553
No 361
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.72 E-value=0.0055 Score=60.79 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=63.6
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.=+.+||||||...+.+.++.+. ..-..+.--|-.+..++.|-+. | +-.-+... + ...++++...||+|..+
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleR----G-vpa~~~~~-~-s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALER----G-VPAMIGVL-G-SQRLPFPSNAFDMVHCS 188 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhc----C-cchhhhhh-c-cccccCCccchhhhhcc
Confidence 34789999999877777666541 1112222235555566666542 3 11111110 1 13467776789999876
Q ss_pred h-hccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 210 A-LVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 210 a-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
. ++.|...+ .-+|-++-|+|+|||.++....
T Consensus 189 rc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 189 RCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 4 45665433 4588899999999999999763
No 362
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.65 E-value=0.089 Score=48.53 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=66.2
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
....++.+||..|+|.+|..++.+|++ .|.+|++++.+++..+.+++ .| ...-+.....+... ...+.+|+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~--~~~~~~d~ 228 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARK----LG-ADEVVDSGAELDEQ--AAAGGADV 228 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----hC-CcEEeccCCcchHH--hccCCCCE
Confidence 345788999999999999999999984 78999999999988777644 34 11111111111111 11136999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+.+.. . ...+..+.+.|+++|.++.-.
T Consensus 229 vi~~~~------~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVV------S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCC------c-HHHHHHHHHhcccCCEEEEEC
Confidence 885422 1 135677889999999988754
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.65 E-value=0.064 Score=50.05 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=68.2
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc----ccchhhc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD----IMEVKEQ 199 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D----~~~~~~~ 199 (286)
.....++.+|+..|+|.+|..++.+|+. .|++ |+.++.+++..+.+++ +| ...-+....-+ ..++...
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~~ 229 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKE----LG-ATHTVNVRTEDTPESAEKIAEL 229 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CcEEeccccccchhHHHHHHHH
Confidence 3456789999999999999999999994 7787 9999999888777755 35 21111211111 1111111
Q ss_pred C--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 200 L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
. .+||+|+.+... . ..+....+.++++|+++.-.
T Consensus 230 ~~~~~~d~vld~~g~-----~--~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 230 LGGKGPDVVIECTGA-----E--SCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred hCCCCCCEEEECCCC-----H--HHHHHHHHHhhcCCEEEEEc
Confidence 2 359999865321 1 26778899999999988653
No 364
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.64 E-value=0.17 Score=47.79 Aligned_cols=105 Identities=23% Similarity=0.242 Sum_probs=66.8
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceee
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~ 207 (286)
+..+|..||+|..|.+............+++-+|++++ +-..+..+-.... +....++.. +|. .++.+.|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~~~~~v~~~~dy----~~~~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLKNPKIEADKDY----SVTANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cCCCCEEEECCCH----HHhCCCCEEE
Confidence 45699999999999887765543334567999999876 4466666666654 222224443 553 2457899998
Q ss_pred hhhhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+-. ||+..+ -.++.+.+.+. .|.|.+++-+
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 86543 444322 23344555555 6788877754
No 365
>PRK08655 prephenate dehydrogenase; Provisional
Probab=95.62 E-value=0.065 Score=52.80 Aligned_cols=91 Identities=11% Similarity=0.186 Sum_probs=59.3
Q ss_pred CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
++|++|| +|.+|.+.....+ ..|.+|+++|.+++.. .+.....| . .+ ..|. .......|+|+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~---~~~a~~~g-v----~~-~~~~---~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKG---KEVAKELG-V----EY-ANDN---IDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHH---HHHHHHcC-C----ee-ccCH---HHHhccCCEEEEec
Confidence 4799998 7888765544443 2678999999998764 22333445 2 22 2232 22345789999875
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-+ ..-..+++.+.+.++||.+++--+
T Consensus 67 p~----~~~~~vl~~l~~~l~~~~iViDvs 92 (437)
T PRK08655 67 PI----NVTEDVIKEVAPHVKEGSLLMDVT 92 (437)
T ss_pred CH----HHHHHHHHHHHhhCCCCCEEEEcc
Confidence 43 344578899999999988666543
No 366
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.62 E-value=0.018 Score=52.26 Aligned_cols=103 Identities=8% Similarity=0.017 Sum_probs=73.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
+.-..+++|||| +|.-+-.+-.+ .=.+++-.|.|-.|++-|+.. +.. +-.+.+.++|-..+++..+++|+|+.
T Consensus 71 k~fp~a~diGcs-~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp---~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 71 KSFPTAFDIGCS-LGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDP---SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hhCcceeecccc-hhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCC---ceEEEEEecchhcccccccchhhhhh
Confidence 344689999999 45544444331 346789999999999998874 222 34678899997777776678999986
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+--.+|. .+--..+-+++..+||+|.++..
T Consensus 144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence 5433442 23335777899999999999873
No 367
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.61 E-value=0.039 Score=50.81 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=55.1
Q ss_pred CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccc-cchhhcCCCcce
Q 042119 132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDI-MEVKEQLGEYDC 205 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~-~~~~~~l~~fD~ 205 (286)
++|+.||+|.+|..... |++ .|..|+.++. ++.++..++ .|. ...+..+ .... .+.......+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence 47999999998875433 444 5789999999 666554332 331 0001111 0111 111112257999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
||++.-- ..-..+++.+.+.+.++..++.
T Consensus 72 vilavk~----~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKA----YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEecc----cCHHHHHHHHHhhcCCCCEEEE
Confidence 9987421 2345688888888888776553
No 368
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.57 E-value=0.072 Score=41.76 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=56.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.+++||.||+|+.+..-+... ...|++|+.+..+.+..+ + ++++...+. ..++.++|+||.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~L--l~~gA~v~vis~~~~~~~---------~----~i~~~~~~~---~~~l~~~~lV~~ 66 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLL--LEAGAKVTVISPEIEFSE---------G----LIQLIRREF---EEDLDGADLVFA 66 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHH--CCCTBEEEEEESSEHHHH---------T----SCEEEESS----GGGCTTESEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHH--HhCCCEEEEECCchhhhh---------h----HHHHHhhhH---HHHHhhheEEEe
Confidence 3578999999997666544443 357899999999971111 3 577775554 356778999996
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEeec-Ccceeeecc
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA-KGARAFLYP 250 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-~g~r~~lyp 250 (286)
+.- +. ++-+.+++..+.-|+++.... .....|..|
T Consensus 67 at~---d~----~~n~~i~~~a~~~~i~vn~~D~p~~~dF~~P 102 (103)
T PF13241_consen 67 ATD---DP----ELNEAIYADARARGILVNVVDDPELCDFIFP 102 (103)
T ss_dssp -SS----H----HHHHHHHHHHHHTTSEEEETT-CCCCSEE--
T ss_pred cCC---CH----HHHHHHHHHHhhCCEEEEECCCcCCCeEEcC
Confidence 632 11 233455555555566666543 233346555
No 369
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.56 E-value=0.078 Score=52.82 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=65.0
Q ss_pred CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
.+|.+||.|.+|..... |++ .|.+|+++|++++.++...+.....| ..+. .+.+..++...+...|+||+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~~g---~~i~-~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKEGN---TRVK-GYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhhcC---Ccce-ecCCHHHHHhcCCCCCEEEEEe
Confidence 47999999988865322 233 78899999999999887665433334 1222 2345555555555689888763
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
.- .+.=..+++.+.+.|+||.+++-
T Consensus 75 ~~---~~~v~~vi~~l~~~L~~g~iIID 99 (470)
T PTZ00142 75 KA---GEAVDETIDNLLPLLEKGDIIID 99 (470)
T ss_pred CC---hHHHHHHHHHHHhhCCCCCEEEE
Confidence 32 23445788999999998877655
No 370
>PRK15076 alpha-galactosidase; Provisional
Probab=95.51 E-value=0.014 Score=57.49 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=53.0
Q ss_pred CEEEEeccCCChhhHHH---HH-hhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEE-EccccchhhcCCCcce
Q 042119 132 KKVAFVGSGPMPLTSII---MA-KHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFL-TRDIMEVKEQLGEYDC 205 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~---lA-~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~-~~D~~~~~~~l~~fD~ 205 (286)
.+|..||+|.+|++... ++ ...+++.+|+-+|+|++.++.+.++++.. ......+++. +.|. ..++.+.|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~---~eal~dADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDR---REALQGADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCH---HHHhCCCCE
Confidence 48999999987876544 22 11356779999999999988766665432 1011235555 4553 345567899
Q ss_pred eehhhhcc
Q 042119 206 IFLAALVG 213 (286)
Q Consensus 206 V~~aalvg 213 (286)
|+.++-+|
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99988875
No 371
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.49 E-value=0.039 Score=51.85 Aligned_cols=95 Identities=6% Similarity=0.096 Sum_probs=55.5
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC------CCeEEEEcc--ccchhhcCCCc
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE------GRMKFLTRD--IMEVKEQLGEY 203 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~------~~i~f~~~D--~~~~~~~l~~f 203 (286)
++|.+||+|.+|..-..... ..|.+|+.+|.++.. +. +++.| +. .+....... ..+.......+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~--~~G~~V~~~~r~~~~-~~----~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA--AAGADVTLIGRARIG-DE----LRAHG-LTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH--hcCCcEEEEecHHHH-HH----HHhcC-ceeecCCCcceecccceeEeccChhhccCC
Confidence 57999999998865444333 268899999997532 22 23333 11 011100000 00111234579
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|+|+++.- ..+..++++.+.+.++++.+++.
T Consensus 75 D~vil~vk----~~~~~~~~~~l~~~~~~~~iii~ 105 (341)
T PRK08229 75 DLVLVTVK----SAATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred CEEEEEec----CcchHHHHHHHHhhCCCCCEEEE
Confidence 99997642 24556788999999888876553
No 372
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=95.47 E-value=0.075 Score=49.48 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=68.1
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~ 202 (286)
...++.+||..|+|++|..++.+|++ .| .+|+++|.+++..+.+++ +| ...-+.....+... +.. ....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQL--YSPSKIIMVDLDDNRLEVAKK----LG-ATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCceeccccccHHHHHHHHhCCCC
Confidence 45788999999999999999999994 67 789999999988776664 45 32223333222111 111 1136
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-+. + .+ ..++.+.+.++++|.++.-.
T Consensus 236 ~d~vld~~--g----~~-~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 236 VDVVIEAV--G----IP-ATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCEEEECC--C----CH-HHHHHHHHhccCCcEEEEec
Confidence 99998543 2 11 25778889999999998654
No 373
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.1 Score=47.35 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=70.0
Q ss_pred hcCC-CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCC-
Q 042119 125 ENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLG- 201 (286)
Q Consensus 125 ~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~- 201 (286)
.+.+ .+++.+||||+-++|+|-.++-+ .-.+|.++|..-..+.+.-+. .. .-+.+...|+..+.. ++.
T Consensus 73 ~F~l~~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~---d~---rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 73 EFELDVKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN---DP---RVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred hcCcCCCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc---CC---cEEEEecCChhhCCHHHccc
Confidence 4443 78899999999999999887765 557899999998776665443 21 223555556654433 222
Q ss_pred Ccceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 202 EYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 202 ~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
..|++..+ +++ .-..+|..+...++||+-++..
T Consensus 144 ~~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 144 KPDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CCCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEE
Confidence 46776654 444 3346999999999999988774
No 374
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.45 E-value=0.067 Score=49.65 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=59.2
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-c--CC--CCCCeEEEEccccchhhcCCCccee
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-D--AE--FEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~--g~--l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
++|.+||+|.+|........ ..|.+|+.+|.+++.++..++.-.. . +. +..++++ ..|.. ....+.|+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~D~v 75 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLA--RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLA---EALADADLI 75 (325)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHH---HHHhCCCEE
Confidence 37999999988765433222 2678999999999877655442100 0 00 0012222 22322 223478999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+++.- ......+++.+.+.++||.+++.-
T Consensus 76 i~~v~----~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 76 LVAVP----SQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EEeCC----HHHHHHHHHHHHhhcCCCCEEEEE
Confidence 97643 245677888898888888766544
No 375
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=95.45 E-value=0.063 Score=50.89 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=67.4
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hhh-cC
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VKE-QL 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~~-~l 200 (286)
..+.++.+||..|+|++|..++.+|+. .|++ |++++.+++..+.+++ +| ...-+..... +..+ +.. .-
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKA--AGASRIIAVDINKDKFEKAKQ----LG-ATECINPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CCeecccccccchHHHHHHHHhC
Confidence 346788999999999999999999994 5774 8999999998777755 45 2222222222 2111 111 01
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhcc-CCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMK-DGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~-pgg~lv~r~ 240 (286)
+.+|+|+-+. | . ...+....+.++ ++|+++.-.
T Consensus 252 ~~~d~vid~~--g----~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 252 GGVDYAFEVI--G----S-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCcEEEECC--C----C-HHHHHHHHHHhccCCCEEEEEe
Confidence 4699998543 2 1 236677888899 999998754
No 376
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.45 E-value=0.066 Score=50.70 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-EccccchhhcC
Q 042119 122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL-TRDIMEVKEQL 200 (286)
Q Consensus 122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l 200 (286)
.+.+++..++++|..+|-|.+|--++.+|++ .|.+|++||.+...-+ +.++.+| -+.=+.+. ..|.++...
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKA--MG~rV~vis~~~~kke---ea~~~LG-Ad~fv~~~~d~d~~~~~~-- 244 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKA--MGMRVTVISTSSKKKE---EAIKSLG-ADVFVDSTEDPDIMKAIM-- 244 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHHH--hCcEEEEEeCCchhHH---HHHHhcC-cceeEEecCCHHHHHHHH--
Confidence 4556677899999999999999999999995 8999999999974433 3445577 22222222 233322111
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+..|.+...... . -...++.+.+.||++|.+++-.
T Consensus 245 ~~~dg~~~~v~~-~----a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 245 KTTDGGIDTVSN-L----AEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred HhhcCcceeeee-c----cccchHHHHHHhhcCCEEEEEe
Confidence 234443321110 0 0125667888999999999976
No 377
>PLN02702 L-idonate 5-dehydrogenase
Probab=95.43 E-value=0.069 Score=50.40 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=67.7
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--Eccccchhh---
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFL--TRDIMEVKE--- 198 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~--~~D~~~~~~--- 198 (286)
.....++.+|+.+|+|++|..++.+|++ .|+. |+++|.+++..+.+++ +| ....+.+. ..+..+...
T Consensus 176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~ 248 (364)
T PLN02702 176 RANIGPETNVLVMGAGPIGLVTMLAARA--FGAPRIVIVDVDDERLSVAKQ----LG-ADEIVLVSTNIEDVESEVEEIQ 248 (364)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEecCcccccHHHHHHHHh
Confidence 3455788999999999999999999994 6764 8999999888777665 45 22222221 112211110
Q ss_pred --cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 --QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 --~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.-..+|+|+.+. + . ...+....+.++++|+++.-.
T Consensus 249 ~~~~~~~d~vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 249 KAMGGGIDVSFDCV--G----F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hhcCCCCCEEEECC--C----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 113589988643 2 1 136788899999999988754
No 378
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.43 E-value=0.094 Score=48.32 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=66.3
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
..+.++.+|+..|+|++|..++.+|++ .|.+|++++.+++..+.+++ .| . + .++..+ +. .-+++|+
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~--~~--~~~~vD~ 228 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELARE----LG-A-D--WAGDSD--DL--PPEPLDA 228 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHH----hC-C-c--EEeccC--cc--CCCcccE
Confidence 345788999999999999999999984 78999999999876666643 56 2 1 111111 11 1136898
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++..... ...++.+.+.|+++|.++.-.
T Consensus 229 vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAPV-------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCCc-------HHHHHHHHHHhhcCCEEEEEc
Confidence 8754321 147888999999999999754
No 379
>PRK08324 short chain dehydrogenase; Validated
Probab=95.43 E-value=0.35 Score=50.17 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=65.5
Q ss_pred CCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----------
Q 042119 130 QPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---------- 198 (286)
Q Consensus 130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---------- 198 (286)
.+++||..|+ |.+|........ ..|++|+.+|++++..+.+.+.+... .++.++..|+.+...
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5689999995 555554333222 36899999999998766555443221 368889999865321
Q ss_pred cCCCcceeehhhhccCC-------hhH-----------HHHHHHHHHhhccC---CcEEEEee
Q 042119 199 QLGEYDCIFLAALVGMS-------KEE-----------KLTILGHIRKYMKD---GGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalvg~~-------~~~-----------k~~vl~~l~~~l~p---gg~lv~r~ 240 (286)
..+++|+|+.++.+... .+. ...+++.+.+.|++ ||.+++-+
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 23468998866543111 010 23456677777776 67776654
No 380
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.42 E-value=0.16 Score=49.66 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCC-Ccce
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLG-EYDC 205 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~-~fD~ 205 (286)
+.++.||||.-+-|+|=|+- +|....-.+.|.+-|.+...+..-+.++.++|. .+.-....|..+++. ... +||=
T Consensus 239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCcccce
Confidence 58899999999999998854 555333457899999999999999999999994 455566777766542 222 6999
Q ss_pred eehhhhc-c--C---C------h---------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALV-G--M---S------K---------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalv-g--~---~------~---------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+++|-- | + + . .--.++|.+....++|||+||+.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9887621 1 1 0 0 012467888888999999999975
No 381
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.41 E-value=0.14 Score=45.18 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCCEEEEeccCCChhhHH-HHHhhcCCCc-EEEEEeCC---hHHHH---------------HHHHHHHhcCCCCCCeEEE
Q 042119 130 QPKKVAFVGSGPMPLTSI-IMAKHHLTST-HFDNFDID---EAAND---------------VARSIVASDAEFEGRMKFL 189 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~-~V~~iDid---~~ai~---------------~Ar~~~~~~g~l~~~i~f~ 189 (286)
...+|+.||||.+|-... .||+ .|. +++-+|.| ++.+. .+++.+++.. -.-+++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~ 95 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY 95 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence 468999999997776433 3444 566 79999999 43332 2334444443 12344444
Q ss_pred Eccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 190 TRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 190 ~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
..++.+ +...+.++|+|+.+. -+.+.|..+++.+.+.+++.-++..
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a~---Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEAF---DNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEECC---CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 444432 122346799999762 2346788888999998876444443
No 382
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.37 E-value=0.11 Score=53.17 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI 206 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V 206 (286)
..+|+.+|+|..|......-+ ..|.+++.+|.||+.++.+++ .| ...+.||+.+.. ...++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence 468999999999886554333 268899999999999998765 45 467889998632 134578877
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+.+. + + .+....+-...|.+.|...+++|..
T Consensus 469 v~~~--~-d-~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITC--N-E-PEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEe--C-C-HHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 7542 1 2 2333344445667789999999863
No 383
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=95.37 E-value=0.057 Score=51.60 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccc-hhh--c
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIME-VKE--Q 199 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~-~~~--~ 199 (286)
.+.++.+||..|+|++|..++.+|+. .|+ +|++++.+++..+.+++ +| ...-+..... +..+ +.. .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~--~G~~~vi~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~~v~~~~~ 272 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKA--AGASKVIAFEISEERRNLAKE----MG-ADYVFNPTKMRDCLSGEKVMEVTK 272 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-CCEEEcccccccccHHHHHHHhcC
Confidence 45788999999999999999999994 677 79999999886555554 56 3221222111 1111 111 1
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-.++|+|+-+ .| .....+.+..+.|+++|+++.-+
T Consensus 273 g~gvDvvld~--~g----~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 273 GWGADIQVEA--AG----APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCCEEEEC--CC----CcHHHHHHHHHHHHcCCEEEEEC
Confidence 1359988844 33 22346778888999999998754
No 384
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.36 E-value=0.18 Score=47.09 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=60.9
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
++|..||+|..|.+...... ..| .+++.+|++++.. ..+.++-+........+.+..+|. .++.++|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~--~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~----~~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV--NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY----SDCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH--hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH----HHhCCCCEEEE
Confidence 48999999988887766544 244 5899999988753 344444333321123445554443 23568999998
Q ss_pred hhhc----cCChhH----H----HHHHHHHHhhccCCcEEEEee
Q 042119 209 AALV----GMSKEE----K----LTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalv----g~~~~~----k----~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++-+ ||+..+ - .++.+.+.+ -.|.|++++-+
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEec
Confidence 7654 333322 2 234444444 36788777754
No 385
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=95.35 E-value=0.083 Score=50.05 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh-cCCCc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE-QLGEY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~-~l~~f 203 (286)
.+.++++||..|+|++|..++.+|++ .|+ .|+++|.+++..+.+++ .| ...-+.....+..+ +.. .-.++
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~--~G~~~v~~~~~~~~k~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKI--AGCTTIIAVDIVDSRLELAKE----LG-ATHVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CcEEecCCCcCHHHHHHHHhCCCC
Confidence 45678999999999999999999994 678 69999999988777665 45 21111111111111 111 11369
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+-+..- ...+....+.++++|.++.-.
T Consensus 256 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTGV-------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCCC-------cHHHHHHHHHhccCCEEEEeC
Confidence 999865321 135778899999999988754
No 386
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.33 E-value=0.095 Score=49.47 Aligned_cols=101 Identities=12% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-ccccchhhcCCCcce
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSI--VASDAEFEGRMKFLT-RDIMEVKEQLGEYDC 205 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~ 205 (286)
+..+|..||+|.+|.+...++.. .| +.++-+|++++..+ +..+ ...........++.. +|. . ++.+.|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~---~-~l~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNY---E-DIKDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCH---H-HhCCCCE
Confidence 45799999999989887666542 44 68999999987644 3332 111111122344443 342 2 5578899
Q ss_pred eehhhhccCCh------------hHHHHHHHHHHhhccCCcEEEE
Q 042119 206 IFLAALVGMSK------------EEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 206 V~~aalvg~~~------------~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|++++.++... +-+.++.+.+.+. .|.+.+++
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~viv 120 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVIC 120 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 99887553222 3355677777776 57775554
No 387
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.18 Score=49.28 Aligned_cols=74 Identities=22% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-AANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.+++|+.+|+|+.|+....... ..|++|+++|.++ +.++...+.+.+.| +++..+|..+ ...+++|+|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~--~~~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPE--EFLEGVDLVVV 74 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcch--hHhhcCCEEEE
Confidence 4689999999988775444332 4799999999986 33322222233334 5677788754 23457999988
Q ss_pred hhhc
Q 042119 209 AALV 212 (286)
Q Consensus 209 aalv 212 (286)
+..+
T Consensus 75 ~~g~ 78 (450)
T PRK14106 75 SPGV 78 (450)
T ss_pred CCCC
Confidence 7654
No 388
>PHA01634 hypothetical protein
Probab=95.27 E-value=0.085 Score=43.77 Aligned_cols=72 Identities=10% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..+++|++||.+ .|-|||+++- .|| .|++++.+|...+..+++++-... -++..- .+ +.+...+.||+..
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~nnI-~DK~v~-~~---eW~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAYFNI-CDKAVM-KG---EWNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhhhee-eeceee-cc---cccccCCCcceEE
Confidence 578999999998 8999999986 555 699999999999999998776542 122111 11 2344556788765
Q ss_pred hh
Q 042119 208 LA 209 (286)
Q Consensus 208 ~a 209 (286)
++
T Consensus 98 iD 99 (156)
T PHA01634 98 MD 99 (156)
T ss_pred EE
Confidence 44
No 389
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.26 E-value=0.07 Score=52.71 Aligned_cols=74 Identities=9% Similarity=-0.046 Sum_probs=50.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
..+++|+.||+|+.|+++..+.. ..|.+|+++|.++. ......+.+++.| +++..++..+ ....+|+|+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~---~~~~~D~Vv 83 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPT---LPEDTDLVV 83 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCcc---ccCCCCEEE
Confidence 34679999999999998766555 37899999996653 3332233455555 6777766433 224689999
Q ss_pred hhhhc
Q 042119 208 LAALV 212 (286)
Q Consensus 208 ~aalv 212 (286)
.+..+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 87655
No 390
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=95.24 E-value=0.13 Score=47.15 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=65.9
Q ss_pred CCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcc
Q 042119 128 VVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYD 204 (286)
Q Consensus 128 ~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD 204 (286)
..++.+||..| +|++|..++.+|++ .|++|++++.+++..+.+++. .| ...-+.....+..+....+ .++|
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~---~g-~~~~~~~~~~~~~~~v~~~~~~~~d 216 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKL--LGARVVGIAGSDEKCRWLVEE---LG-FDAAINYKTPDLAEALKEAAPDGID 216 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhh---cC-CceEEecCChhHHHHHHHhccCCce
Confidence 46789999999 69999999999994 789999999999877766553 45 2111222111111101111 4699
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+-+. | . ..+....+.++++|.++.-.
T Consensus 217 ~vi~~~--g----~--~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 217 VYFDNV--G----G--EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEEEcc--h----H--HHHHHHHHhcCCCceEEEEe
Confidence 988542 2 1 36778888999999988654
No 391
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.19 Score=48.83 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=70.4
Q ss_pred CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHH------------HHHHhcCCCCCCeEEEEccccchhh
Q 042119 132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVAR------------SIVASDAEFEGRMKFLTRDIMEVKE 198 (286)
Q Consensus 132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar------------~~~~~~g~l~~~i~f~~~D~~~~~~ 198 (286)
+||..||+|=.|++ +.+||+ .|.+|+|+|+|+.-++.-+ +++++.. ...|++|- .|. ..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fT-td~---~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL-ASGRLRFT-TDY---EE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc-ccCcEEEE-cCH---HH
Confidence 58999999988875 567777 7899999999999998754 3444333 24567774 333 33
Q ss_pred cCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+...|++|++.--. .+..-=..+.+.+.+.++...+++..|
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 445789999875321 122334567888888988878888876
No 392
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.22 E-value=0.1 Score=48.65 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=57.2
Q ss_pred EEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSI--VASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~--~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a 209 (286)
|..||+|.+|.+...... ..|. +|+.+|++++.. .++.. ...........++.. +|. .++.+.|+|+++
T Consensus 1 I~IIGaG~vG~~ia~~la--~~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~----~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA--LKELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDY----EDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHH--hCCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCH----HHhCCCCEEEEe
Confidence 568999998887665443 2333 999999998743 33332 221110112344442 442 245788999976
Q ss_pred hhc------------cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 210 ALV------------GMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 210 alv------------g~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
+.+ ..+.+-+.++++.+.+.. |.+.+++
T Consensus 74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv 113 (300)
T cd01339 74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIV 113 (300)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 532 123345778888888876 5565444
No 393
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.19 E-value=0.073 Score=49.78 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=57.2
Q ss_pred CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccccchhhcCCCccee
Q 042119 132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
+||+.||+|++|.. +..|++ .|..|+.++.+++.++.-++. -|+ -.....+... .. .+...+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~-~~-~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIP-AE-TADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccC-CC-CcccccccCEE
Confidence 58999999988753 444555 678999999987655443331 121 0111121111 11 11223579999
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
+++ ... -+-.++++.+.+.+.+++.++.
T Consensus 75 iv~-vK~---~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 75 LLA-CKA---YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEE-CCH---HhHHHHHHHHHhhCCCCCEEEE
Confidence 986 332 2334688899999999886544
No 394
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.16 E-value=0.13 Score=39.04 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=54.9
Q ss_pred EEEEeccCCChhhHHHHHhhcCCC---cEEE-EEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTS---THFD-NFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g---~~V~-~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
||.+||+|.+|.....-- ...| .+|+ +.+.+++..+...+. .+ +.+...|..+.. +..|+||+
T Consensus 1 kI~iIG~G~mg~al~~~l--~~~g~~~~~v~~~~~r~~~~~~~~~~~---~~-----~~~~~~~~~~~~---~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL--LASGIKPHEVIIVSSRSPEKAAELAKE---YG-----VQATADDNEEAA---QEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH--HHTTS-GGEEEEEEESSHHHHHHHHHH---CT-----TEEESEEHHHHH---HHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH--HHCCCCceeEEeeccCcHHHHHHHHHh---hc-----cccccCChHHhh---ccCCEEEE
Confidence 689999998765433211 2245 8898 449999887665544 44 344443443433 36799998
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
+.- +..-.+++..+ +...+|..++
T Consensus 68 av~----p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 68 AVK----PQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -S-----GGGHHHHHHHH-HHHHTTSEEE
T ss_pred EEC----HHHHHHHHHHH-hhccCCCEEE
Confidence 742 35666788888 6777777665
No 395
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=95.15 E-value=0.077 Score=49.43 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCc
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEY 203 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~f 203 (286)
..++.+|+..|+|++|..++.+|+. .|.+ |++++.+++..+.+++ +| ...-+.....+..+... .-.+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~l~~~~~~~~~ 231 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKK----MG-ATYVVNPFKEDVVKEVADLTDGEGV 231 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-CcEEEcccccCHHHHHHHhcCCCCC
Confidence 4678999999999999999999994 6886 8899999888777665 35 21112221222211111 12369
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+.+.. .. ..+..+.+.|+++|.++.-.
T Consensus 232 d~vld~~g-----~~--~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 232 DVFLEMSG-----AP--KALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CEEEECCC-----CH--HHHHHHHHhhcCCCEEEEEc
Confidence 99986532 11 35778899999999988765
No 396
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.11 Score=44.26 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=71.9
Q ss_pred hhhhHHHHHHHHhcCC-CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119 113 VKLSKLEYTILSENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLT 190 (286)
Q Consensus 113 ~~l~~~E~~~l~~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~ 190 (286)
+.-...+.+-..+... .+..+.+|+|||- |---+.-|+ -| ..-+|++.+|--+.++|-..-+.| .+++.+|..
T Consensus 54 VpAtteQv~nVLSll~~n~~GklvDlGSGD-GRiVlaaar---~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~R 128 (199)
T KOG4058|consen 54 VPATTEQVENVLSLLRGNPKGKLVDLGSGD-GRIVLAAAR---CGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRR 128 (199)
T ss_pred cCccHHHHHHHHHHccCCCCCcEEeccCCC-ceeehhhhh---hCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhh
Confidence 4444333333333333 4557999999995 443333333 34 567899999999999999988899 899999999
Q ss_pred ccccchhhcCCCcc--eeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 191 RDIMEVKEQLGEYD--CIFLAALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 191 ~D~~~~~~~l~~fD--~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
-|+ ...++.+|. +||.+-.+--+.++ .+...|..+..++
T Consensus 129 kdl--wK~dl~dy~~vviFgaes~m~dLe~------KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 129 KDL--WKVDLRDYRNVVIFGAESVMPDLED------KLRTELPANTRVV 169 (199)
T ss_pred hhh--hhccccccceEEEeehHHHHhhhHH------HHHhhCcCCCeEE
Confidence 998 456666665 34444332112233 3555677777654
No 397
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.13 E-value=0.091 Score=48.88 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=59.4
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH--HHHhcCCCCCCeEEE-EccccchhhcCCCcceeeh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS--IVASDAEFEGRMKFL-TRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~--~~~~~g~l~~~i~f~-~~D~~~~~~~l~~fD~V~~ 208 (286)
++|..||+|.+|.+..........+ +|+.+|++++..+ ++. +...........++. ++|. .++.+.|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~-~~~~dl~~~~~~~~~~~~i~~~~d~----~~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ-GKALDIAEAAPVEGFDTKITGTNDY----EDIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH-HHHHHHHhhhhhcCCCcEEEeCCCH----HHHCCCCEEEE
Confidence 5899999999888766544421123 9999999998753 322 222211011223443 2342 23567899998
Q ss_pred hhhcc------------CChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVG------------MSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg------------~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
++-+. .+.+.+.++++.+.+.. |++.+++-
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~ 118 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV 118 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 75431 12244677777777775 66655554
No 398
>PLN02712 arogenate dehydrogenase
Probab=95.13 E-value=0.89 Score=47.34 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+.+|.+||.|.+|.+.....+ ..|.+|+++|.++.. +. +...| . .+ ..|..++.. ...|+|++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----a~~~G-v----~~-~~~~~el~~--~~aDvVIL 431 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMV--KQGHTVLAYSRSDYS-DE----AQKLG-V----SY-FSDADDLCE--EHPEVILL 431 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHH--HCcCEEEEEECChHH-HH----HHHcC-C----eE-eCCHHHHHh--cCCCEEEE
Confidence 36689999999988765433222 257899999999642 22 33456 2 22 234333221 24799998
Q ss_pred hhhccCChhHHHHHHHHHHh-hccCCcEEEE
Q 042119 209 AALVGMSKEEKLTILGHIRK-YMKDGGILLV 238 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~-~l~pgg~lv~ 238 (286)
+.-+ ..-..+++++.. .++||.+++=
T Consensus 432 avP~----~~~~~vi~~l~~~~lk~g~ivvD 458 (667)
T PLN02712 432 CTSI----LSTEKVLKSLPFQRLKRSTLFVD 458 (667)
T ss_pred CCCh----HHHHHHHHHHHHhcCCCCcEEEE
Confidence 8543 344567777765 6788876654
No 399
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=95.11 E-value=0.15 Score=47.48 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=67.7
Q ss_pred HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CC
Q 042119 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LG 201 (286)
Q Consensus 123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~ 201 (286)
+.+..+.++.+|+..|+|++|..++.+|++ .|.+|++++.+++..+.+++ +|. +.+ +...+ .+.... ..
T Consensus 162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g~--~~v-i~~~~-~~~~~~~~~ 231 (337)
T cd05283 162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALK----LGA--DEF-IATKD-PEAMKKAAG 231 (337)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cCC--cEE-ecCcc-hhhhhhccC
Confidence 334456788999999999999999999984 68999999999988777754 451 211 11111 111111 24
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+|+|+.+.-. . ..+....+.++++|.++.-.
T Consensus 232 ~~d~v~~~~g~-----~--~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 232 SLDLIIDTVSA-----S--HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CceEEEECCCC-----c--chHHHHHHHhcCCCEEEEEe
Confidence 69999854321 1 24567788889999988754
No 400
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=95.11 E-value=0.13 Score=48.97 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=68.7
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC-C
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL-G 201 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l-~ 201 (286)
.....++++|+..|+|++|..++.+|++ .|+ +|+++|.+++..+.+++ +| . ..+.+...+..+ +.... .
T Consensus 171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~~--~G~~~vi~~~~~~~~~~~~~~----~g-~-~~v~~~~~~~~~~i~~~~~~ 242 (375)
T cd08282 171 LAGVQPGDTVAVFGAGPVGLMAAYSAIL--RGASRVYVVDHVPERLDLAES----IG-A-IPIDFSDGDPVEQILGLEPG 242 (375)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-C-eEeccCcccHHHHHHHhhCC
Confidence 4456788999999999999999999984 676 79999999888776665 45 1 112121111111 11111 3
Q ss_pred CcceeehhhhccCCh------hHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSK------EEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~------~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+|+|+.+.-- .. ..+...+....+.++++|.++...
T Consensus 243 ~~d~v~d~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 243 GVDRAVDCVGY--EARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCCEEEECCCC--cccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 68998865321 10 123346788899999999997643
No 401
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.10 E-value=0.19 Score=48.93 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=63.9
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCcceee
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCIF 207 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V~ 207 (286)
++|+.+|+|.+|........ ..|.+|+.+|.|++.++..++ ..| +.++.||+.+... ...++|.|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~---~~~-----~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQD---RLD-----VRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHh---hcC-----EEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 47999999988876555443 368999999999998776654 233 6788899865321 245789887
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+.- .......+....+.+.|.-.++++.
T Consensus 71 ~~~~----~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 71 AVTD----SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EecC----ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6532 1234445556677776777777764
No 402
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.08 E-value=0.083 Score=50.18 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=60.1
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.+++|..||+|.+|.+....++ ..|.+|+++|+++.... + .+++ +.+ +...+...|+|+++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~----~~~~-~~~---l~ell~~aDiVil~ 205 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D----FLTY-KDS---VKEAIKDADIISLH 205 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h----hhhc-cCC---HHHHHhcCCEEEEe
Confidence 5789999999999987555555 37899999999975421 1 0111 122 23334578999876
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.- .+.+.+.-+-+.+.+.|+||+++|--
T Consensus 206 lP--~t~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 206 VP--ANKESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred CC--CcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence 53 23345666778899999998866653
No 403
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.08 E-value=0.029 Score=57.83 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=49.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-----------------HHHHHHHHHHhcCCCCCCeEEEEc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-----------------ANDVARSIVASDAEFEGRMKFLTR 191 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-----------------ai~~Ar~~~~~~g~l~~~i~f~~~ 191 (286)
..+++|+.||+||.|+++...+.+ .|.+|+.+|.++. .++.-.+.+++.| ++|..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~ 397 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG-----IEFELN 397 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-----eEEECC
Confidence 357899999999999999887763 7899999997643 4444455566666 444432
Q ss_pred -----cccchhhcCCCcceeehhh
Q 042119 192 -----DIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 192 -----D~~~~~~~l~~fD~V~~aa 210 (286)
|+ .+.....+||.||++.
T Consensus 398 ~~v~~~i-~~~~~~~~~DavilAt 420 (654)
T PRK12769 398 CEVGKDI-SLESLLEDYDAVFVGV 420 (654)
T ss_pred CEeCCcC-CHHHHHhcCCEEEEeC
Confidence 21 1111124799999864
No 404
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.07 E-value=0.073 Score=54.92 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhc------CC-----CcEEEEEeCCh--------------HHHHHHHHHHHh-----
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHH------LT-----STHFDNFDIDE--------------AANDVARSIVAS----- 178 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~------~~-----g~~V~~iDid~--------------~ai~~Ar~~~~~----- 178 (286)
.+.-+|+++|=| +|+..+...+.. -+ ..+++.+|.+| +..++++++.+.
T Consensus 56 ~~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (662)
T PRK01747 56 RRRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL 134 (662)
T ss_pred CCcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence 344799999999 588666555421 12 35899999865 223334444432
Q ss_pred cCC----C-CC--CeEEEEccccchhhcCC-Ccceeehhhhcc-CChhH-HHHHHHHHHhhccCCcEEEEee
Q 042119 179 DAE----F-EG--RMKFLTRDIMEVKEQLG-EYDCIFLAALVG-MSKEE-KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 179 ~g~----l-~~--~i~f~~~D~~~~~~~l~-~fD~V~~aalvg-~~~~~-k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.|. + +. ++++..||+.+....+. .||++|++.+-. .+++. -.++|.+|+++++|||+++.-+
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 120 0 12 44577899988777664 599999998752 11111 2579999999999999999754
No 405
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.06 E-value=0.13 Score=52.08 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=65.2
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI 206 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V 206 (286)
..+|+.+|+|+.|......-+ ..|..|+.||.|++.++.+++ .| .+.++||+.+.. ...+++|.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRE----RG-----IRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCHHHHHhcCccccCEE
Confidence 379999999998876544433 367899999999999888765 34 578899998732 234578877
Q ss_pred ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+.. -+ .+...+...+ +...|+..++.|.
T Consensus 486 iv~~~--~~-~~~~~iv~~~-~~~~~~~~iiar~ 515 (558)
T PRK10669 486 LLTIP--NG-YEAGEIVASA-REKRPDIEIIARA 515 (558)
T ss_pred EEEcC--Ch-HHHHHHHHHH-HHHCCCCeEEEEE
Confidence 75421 11 2222344444 5568899999885
No 406
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=95.05 E-value=0.13 Score=49.13 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=64.1
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccc-hh--hc
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IME-VK--EQ 199 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~-~~--~~ 199 (286)
....++.+|+..|+|++|..++.+|+. .|+ +|+.+|.+++..+.+++ +| ...-+.....+ ..+ +. ..
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~ 258 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKA--AGASRIIAVDINKDKFAKAKE----LG-ATECINPQDYKKPIQEVLTEMTD 258 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEecccccchhHHHHHHHHhC
Confidence 345788999999999999999999994 678 89999999988777744 46 22222222111 111 11 11
Q ss_pred CCCcceeehhhhccCChhHHHHHHHH-HHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGH-IRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~-l~~~l~pgg~lv~r~ 240 (286)
..+|+|+-+. | .. ..+.. +...+++||+++.-.
T Consensus 259 -~~~d~vld~~--g----~~-~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 259 -GGVDFSFEVI--G----RL-DTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred -CCCeEEEECC--C----Cc-HHHHHHHHhhccCCCEEEEEc
Confidence 3699888643 2 11 23444 444556888888765
No 407
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.03 E-value=0.16 Score=47.32 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=57.9
Q ss_pred CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
++|.+||+|.+|..- ..|++ .|.+|+.+|++++..+... ..|. + ...+..++.......|+|+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~-~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALA----EEGA-----T-GADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHH----HCCC-----e-ecCCHHHHHhhcCCCCEEEEEe
Confidence 379999999888643 23333 6889999999998876553 2451 2 1234434333322468888653
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
-- .+.-..+++.+...+++|.+++.-
T Consensus 68 ~~---~~~~~~v~~~l~~~l~~g~ivid~ 93 (301)
T PRK09599 68 PA---GEITDATIDELAPLLSPGDIVIDG 93 (301)
T ss_pred cC---CcHHHHHHHHHHhhCCCCCEEEeC
Confidence 21 123345778888889888766654
No 408
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=95.03 E-value=0.1 Score=48.35 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=65.6
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~ 202 (286)
...++.+||..|+|++|..++.+|+. .|. .|++++.+++..+.++++ | ...-+.....+..+ +.. .-.+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~--~g~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARL--LGAARIIAVDSNPERLDLAKEA----G-ATDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHh----C-CcEEEcCCcchHHHHHHHHcCCCC
Confidence 34678999999999899999999994 574 899999998887776653 4 11112222222111 111 1136
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++-+. + . ...+....+.|+++|+++.-.
T Consensus 237 ~d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 237 VDCVIEAV--G----F-EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CcEEEEcc--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 99988542 2 1 147778889999999988653
No 409
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.02 E-value=0.13 Score=46.54 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=55.0
Q ss_pred CEEEEeccCCChhhHHH-HHhhcCCCc----EEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 132 KKVAFVGSGPMPLTSII-MAKHHLTST----HFDNF-DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~~~~g~----~V~~i-Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
++|.+||+|.+|.+-.. |.+ .|. +|+.+ |.+++..+.+ ...| ++. ..|..+. ..+.|+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~---~g~~~~~~i~v~~~r~~~~~~~~----~~~g-----~~~-~~~~~e~---~~~aDv 64 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVA---SGVVPPSRISTADDSNPARRDVF----QSLG-----VKT-AASNTEV---VKSSDV 64 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHH---CCCCCcceEEEEeCCCHHHHHHH----HHcC-----CEE-eCChHHH---HhcCCE
Confidence 47999999988754322 222 333 88999 9998875443 2346 222 2333222 246899
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILL 237 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv 237 (286)
||++.- .+...+++..+...++||.+++
T Consensus 65 Vil~v~----~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 65 IILAVK----PQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEEEEC----cHHHHHHHHHHHhhcCCCCEEE
Confidence 998742 3567788888888888887655
No 410
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.02 E-value=0.047 Score=46.99 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=59.3
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.+++|..||.|.+|.....+++ ..|.+|+++|.++..-. .....+ +++ .+..++ +...|+|++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~----~~~~~~-----~~~--~~l~el---l~~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLK--AFGMRVIGYDRSPKPEE----GADEFG-----VEY--VSLDEL---LAQADIVSL 97 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHH--HTT-EEEEEESSCHHHH----HHHHTT-----EEE--SSHHHH---HHH-SEEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeee--cCCceeEEecccCChhh----hccccc-----cee--eehhhh---cchhhhhhh
Confidence 46899999999999988888887 37999999999998755 222233 222 344333 346899887
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
+.-. +.+.+.-+=++..+.||+|++||-
T Consensus 98 ~~pl--t~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 98 HLPL--TPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp -SSS--STTTTTSBSHHHHHTSTTTEEEEE
T ss_pred hhcc--ccccceeeeeeeeeccccceEEEe
Confidence 6422 222222233456778899887765
No 411
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=95.01 E-value=0.23 Score=45.83 Aligned_cols=97 Identities=23% Similarity=0.326 Sum_probs=66.6
Q ss_pred cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119 126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204 (286)
Q Consensus 126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD 204 (286)
....++.+|+..|+ |++|..++.+|++ .|++|++++.+++..+.++++ ...= +..+ .+ ..++. .++.+|
T Consensus 158 ~~~~~~~~vlI~g~~g~~g~~~~~la~~--~g~~vi~~~~~~~~~~~~~~~-~~~~-~~~~-~~----~~~v~-~~~~~d 227 (334)
T PRK13771 158 AGVKKGETVLVTGAGGGVGIHAIQVAKA--LGAKVIAVTSSESKAKIVSKY-ADYV-IVGS-KF----SEEVK-KIGGAD 227 (334)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHH-HHHh-cCch-hH----HHHHH-hcCCCc
Confidence 34577899999999 8999999999994 799999999999999888776 2111 1111 11 11111 123689
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+++-+. + . ..+..+.+.++++|.++.-.
T Consensus 228 ~~ld~~--g----~--~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 228 IVIETV--G----T--PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EEEEcC--C----h--HHHHHHHHHHhcCCEEEEEe
Confidence 888542 2 1 24667888899999988754
No 412
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.01 E-value=0.23 Score=48.76 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=54.5
Q ss_pred CEEEEeccCCChhhHHHHHh-----hcCCCcEEEEEeCC-hHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119 132 KKVAFVGSGPMPLTSIIMAK-----HHLTSTHFDNFDID-EAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLG 201 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~-----~~~~g~~V~~iDid-~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~ 201 (286)
.+|.+||+|.. +|...+.. ..+++.+++-+||| ++.++. +++++++.| ..+++... .+....+.
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~---~~~~v~~t--~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG---LPIKVHLT--TDRREALE 74 (419)
T ss_pred CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC---CCeEEEEe--CCHHHHhC
Confidence 37999999975 77555433 13677999999999 888754 777777777 24565543 23455667
Q ss_pred CcceeehhhhccC
Q 042119 202 EYDCIFLAALVGM 214 (286)
Q Consensus 202 ~fD~V~~aalvg~ 214 (286)
+.|+|+....+|.
T Consensus 75 gadfVi~~~~vg~ 87 (419)
T cd05296 75 GADFVFTQIRVGG 87 (419)
T ss_pred CCCEEEEEEeeCC
Confidence 8899998887743
No 413
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.97 E-value=0.21 Score=48.99 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=48.8
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccch---hhcCCCcceeeh
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEV---KEQLGEYDCIFL 208 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~~l~~fD~V~~ 208 (286)
+|++||.|+.|+++..++. ..|.+|+++|..+..- ......+...| +++..+.-.+. ...+.++|+|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~~g-----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQEG-----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHHcC-----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999999999999887776 4899999999876532 11122344445 56665543221 123457999988
Q ss_pred hhhcc
Q 042119 209 AALVG 213 (286)
Q Consensus 209 aalvg 213 (286)
+.-+.
T Consensus 75 s~gi~ 79 (459)
T PRK02705 75 SPGIP 79 (459)
T ss_pred CCCCC
Confidence 76553
No 414
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.92 E-value=0.06 Score=51.50 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=57.0
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
++|.+||+|.+|.+.....+ ..|..+..+|.|+...+.++. ...| ..+. ...|. .......|+||++.-
T Consensus 1 ~~I~iIG~GliG~siA~~L~--~~G~~v~i~~~~~~~~~~~~a--~~~~-~~~~---~~~~~---~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIK--AAGPDVFIIGYDPSAAQLARA--LGFG-VIDE---LAADL---QRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHH--hcCCCeEEEEeCCCHHHHHHH--hcCC-CCcc---cccCH---HHHhcCCCEEEEeCC
Confidence 47999999999876554444 255677777777766555442 1233 1111 11222 223357899998864
Q ss_pred ccCChhHHHHHHHHHHh-hccCCcEEEE
Q 042119 212 VGMSKEEKLTILGHIRK-YMKDGGILLV 238 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~-~l~pgg~lv~ 238 (286)
. .....+++++.+ .++||.++..
T Consensus 70 ~----~~~~~vl~~l~~~~l~~~~ivtD 93 (359)
T PRK06545 70 V----DATAALLAELADLELKPGVIVTD 93 (359)
T ss_pred H----HHHHHHHHHHhhcCCCCCcEEEe
Confidence 3 566788899987 4888865543
No 415
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.86 E-value=0.071 Score=52.45 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=51.9
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK 197 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~ 197 (286)
.-.||+||+|+ |+-+++-+++ .+-.||+++.=..|.+.||++..+.| .+++|+.+.---+++.
T Consensus 67 kv~vLdigtGT-GLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 67 KVFVLDIGTGT-GLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKRSTEVK 129 (636)
T ss_pred eEEEEEccCCc-cHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccccceee
Confidence 34789999996 7777766662 35679999999999999999999999 8999999876655544
No 416
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=94.84 E-value=0.16 Score=46.70 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=62.2
Q ss_pred hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcCCC
Q 042119 125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQLGE 202 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l~~ 202 (286)
.....++.+|+.+|+ |++|..++.+|++ .|++|++++.+ +.++.+| ... .+...+. ..+......
T Consensus 157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~--~G~~v~~~~~~--------~~~~~~g-~~~--~~~~~~~~~~l~~~~~~ 223 (325)
T cd08264 157 TAGLGPGETVVVFGASGNTGIFAVQLAKM--MGAEVIAVSRK--------DWLKEFG-ADE--VVDYDEVEEKVKEITKM 223 (325)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHH--cCCeEEEEeHH--------HHHHHhC-CCe--eecchHHHHHHHHHhCC
Confidence 345678899999997 9999999999994 78999998732 3334466 211 1111111 111111156
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-+. + . ..+....+.|+++|.++.-.
T Consensus 224 ~d~vl~~~--g----~--~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 224 ADVVINSL--G----S--SFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred CCEEEECC--C----H--HHHHHHHHhhccCCEEEEEe
Confidence 89988542 2 2 36778899999999998754
No 417
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.82 E-value=0.25 Score=45.53 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch----hhcC
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV----KEQL 200 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~----~~~l 200 (286)
....++.+||.+|+|.+|..++.+|++ .|.+ |+.++.+++..+.+++ .| .. .++..+-.+. ....
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~---~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKL--NGASRVTVAEPNEEKLELAKK----LG-AT---ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-Ce---EEecCCCCCHHHHHHhcC
Confidence 345788999999999889999999984 6777 8999999988777644 45 22 2222211111 1122
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+|+++-+. + ....+....+.|+++|.++.-.
T Consensus 225 ~~vd~v~~~~--~-----~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEAT--G-----VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECC--C-----ChHHHHHHHHHHhcCCEEEEEe
Confidence 4699998542 1 1246777889999999998754
No 418
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.82 E-value=0.14 Score=50.66 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=54.9
Q ss_pred CEEEEeccCCChhhHHHHHh---h--cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 132 KKVAFVGSGPMPLTSIIMAK---H--HLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~---~--~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
.||.+||+|.. +|...+-. . .+++.+|+-+|||+++++. |++.+++.| ..+++... ++....+.+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g---~~~~v~~T--tdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY---PEIKFVYT--TDPEEAFTD 74 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhC---CCeEEEEE--CCHHHHhCC
Confidence 48999999975 77554322 1 3678999999999998887 555566666 24555433 345667788
Q ss_pred cceeehhhhccC
Q 042119 203 YDCIFLAALVGM 214 (286)
Q Consensus 203 fD~V~~aalvg~ 214 (286)
.|+|+....||.
T Consensus 75 ADfVi~~irvGg 86 (437)
T cd05298 75 ADFVFAQIRVGG 86 (437)
T ss_pred CCEEEEEeeeCC
Confidence 999998887864
No 419
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.82 E-value=0.11 Score=48.45 Aligned_cols=91 Identities=9% Similarity=0.023 Sum_probs=58.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.+++|+.||.|.+|.+....++ ..|++|+.+|.+++..+.+. ..|. ... +..++...+.++|+|+.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~~----~~g~-----~~~--~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARIT----EMGL-----IPF--PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HCCC-----eee--cHHHHHHHhccCCEEEE
Confidence 46799999999998887777666 36899999999987654432 3441 111 12233344568999997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.-.++ +-....+.|+|+++++--
T Consensus 216 t~P~~i-------i~~~~l~~~k~~aliIDl 239 (287)
T TIGR02853 216 TIPALV-------LTADVLSKLPKHAVIIDL 239 (287)
T ss_pred CCChHH-------hCHHHHhcCCCCeEEEEe
Confidence 642211 113455678887766543
No 420
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.80 E-value=0.18 Score=44.59 Aligned_cols=105 Identities=10% Similarity=0.217 Sum_probs=56.5
Q ss_pred CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
-.+++||.||+|.++...+ .|.+ .|++|+.|+.+. .+...+++.. | ++.+...+.. ..++.++|+|+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~--~~~l~~l~~~-~----~i~~~~~~~~--~~~l~~adlVi 75 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPEL--TENLVKLVEE-G----KIRWKQKEFE--PSDIVDAFLVI 75 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCC--CHHHHHHHhC-C----CEEEEecCCC--hhhcCCceEEE
Confidence 3578999999998876544 3433 679999996542 1222232221 2 4666554332 33567899988
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccC
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV 252 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v 252 (286)
.+.- +.+.- .. +....+.+..+-+-+......|..|.+
T Consensus 76 aaT~---d~elN-~~---i~~~a~~~~lvn~~d~~~~~~f~~Pa~ 113 (202)
T PRK06718 76 AATN---DPRVN-EQ---VKEDLPENALFNVITDAESGNVVFPSA 113 (202)
T ss_pred EcCC---CHHHH-HH---HHHHHHhCCcEEECCCCccCeEEEeeE
Confidence 6532 22222 22 233323444333333333445777754
No 421
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=94.80 E-value=0.13 Score=47.65 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~f 203 (286)
...++.+|+..|+|.+|..++.+|++ .|.+ |++++.+++..+..++ .| ...-+........++.... .++
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARE----LG-ADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-CCEEecCccccHHHHHHHhCCCCC
Confidence 45678899999999999999999984 7887 9999999887665543 45 2211222111111111112 249
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+-+. + . ...+..+.+.|+++|+++.-.
T Consensus 229 d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAA--G----S-PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 9998542 1 1 236678889999999988754
No 422
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.77 E-value=0.043 Score=56.51 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=50.0
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-----------------AANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
.+++|+.||+||.|+++...+++ .|.+|+.+|..+ +.++.-.+.+...| ++|..+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG-----IDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC-----eEEEcCC
Confidence 47999999999999998887763 689999999765 33444455666666 3443322
Q ss_pred c----cchhhcCCCcceeehhhh
Q 042119 193 I----MEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 193 ~----~~~~~~l~~fD~V~~aal 211 (286)
. ..+......||.||++.-
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCC
Confidence 1 111111246999998653
No 423
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=94.73 E-value=0.17 Score=46.98 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=65.4
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhh--cCCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKE--QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~--~l~~ 202 (286)
...++++||..|+|++|..++.+|+. .|. +|++++.+++..+.+++ +|. .-+.....+.. .+.. .-.+
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~--~g~~~v~~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~l~~~~~~~~ 235 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQV--LGAARVFAVDPVPERLERAAA----LGA--EPINFEDAEPVERVREATEGRG 235 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH----hCC--eEEecCCcCHHHHHHHHhCCCC
Confidence 34678999999999999999999994 785 89999998877766555 452 11111111111 1111 1136
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++-+.. . ...+....+.|+++|.++.-.
T Consensus 236 ~dvvid~~~------~-~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 236 ADVVLEAVG------G-AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCEEEECCC------C-HHHHHHHHHhcccCCEEEEEC
Confidence 999885431 1 236778888999999988654
No 424
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.71 E-value=0.098 Score=44.02 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=62.0
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH---hcCC--CCCCeEEEEccccchhhcCCCcceee
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA---SDAE--FEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~---~~g~--l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
+|..||+|.+|.+...... ..|.+|+-+..+++.++.-++.-. .++. +..++.+ +.|..+ .+++.|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~---a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE---ALEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH---HHTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH---HhCcccEEE
Confidence 6899999998877655554 378999999999976665444211 0110 1235543 455433 335789998
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA 244 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~ 244 (286)
++.-. ..-..+++++.++++++..++.- .+|+
T Consensus 75 iavPs----~~~~~~~~~l~~~l~~~~~ii~~-~KG~ 106 (157)
T PF01210_consen 75 IAVPS----QAHREVLEQLAPYLKKGQIIISA-TKGF 106 (157)
T ss_dssp E-S-G----GGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred ecccH----HHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence 76432 33457999999999877777654 3554
No 425
>PRK05442 malate dehydrogenase; Provisional
Probab=94.70 E-value=0.17 Score=48.15 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCCEEEEecc-CCChhhHHHHH-hhcCCC----cEEEEEeCChH---HHHHHHHHHHhc-CCCCCCeEEEEccccchhh
Q 042119 129 VQPKKVAFVGS-GPMPLTSIIMA-KHHLTS----THFDNFDIDEA---ANDVARSIVASD-AEFEGRMKFLTRDIMEVKE 198 (286)
Q Consensus 129 ~~~~~VL~IG~-G~lp~tai~lA-~~~~~g----~~V~~iDid~~---ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~~~ 198 (286)
+.|.+|..||+ |..|.+..+.. ....-+ .+++-+|+.+. +-..+..+.... . +..++++..+| ..
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~----y~ 76 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFP-LLAGVVITDDP----NV 76 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhh-hcCCcEEecCh----HH
Confidence 56889999998 99998855432 211111 27999999654 566677766654 3 22345554333 24
Q ss_pred cCCCcceeehhhhc----cCChhH----HHHHHH----HHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLAALV----GMSKEE----KLTILG----HIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalv----g~~~~~----k~~vl~----~l~~~l~pgg~lv~r~ 240 (286)
++.+.|+|++.+-+ |++..+ ..++++ .+.++-+|.|++++-+
T Consensus 77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 56789999887754 443322 223444 4444444688888765
No 426
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.69 E-value=0.086 Score=52.53 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+++|+.+|.|+.|++++.+.+ ..|++|++.|..++..+. +++.| +.+..++. ....+.++|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~--~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRP----HAERG-----VATVSTSD--AVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcc--hHhHhhcCCEEEE
Confidence 46789999999999999998776 388999999987765332 33345 45554433 1233457899998
Q ss_pred hhhcc
Q 042119 209 AALVG 213 (286)
Q Consensus 209 aalvg 213 (286)
+.-+.
T Consensus 77 SpGi~ 81 (488)
T PRK03369 77 SPGFR 81 (488)
T ss_pred CCCCC
Confidence 87663
No 427
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.66 E-value=0.3 Score=45.99 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=65.2
Q ss_pred EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCC-CCeEEEEccccchhhcCCCcceeehhh
Q 042119 133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
+|..||+|..|.+.....-......+++-+|++++ +-..|..+........ .++++..+|. .++.+.|+|++.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y----~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY----DDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH----HHhCCCCEEEECC
Confidence 58899999999887443321233457999999866 4566666666544221 3577777663 3556899998877
Q ss_pred hc----cCCh------hHHHHHHHHHHhhc---cCCcEEEEee
Q 042119 211 LV----GMSK------EEKLTILGHIRKYM---KDGGILLVRS 240 (286)
Q Consensus 211 lv----g~~~------~~k~~vl~~l~~~l---~pgg~lv~r~ 240 (286)
-+ ||+. ..-.++++++.+.+ .|+|++++-+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 54 5542 22334555555444 3678877754
No 428
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.63 Score=42.88 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=78.8
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc-
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHH--LTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD- 204 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD- 204 (286)
+..+....++|||.--=|.+.+-... ..-.+.+-||+|...++-.-+-+.+.- .+-.|.-++||-......+...-
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-PGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-CCCeEeehhhhHHHHHhcccCCCe
Confidence 35689999999998766666654311 123789999999998876555444433 24578889999755444443332
Q ss_pred --eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 205 --CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 205 --~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
++|.-+.+|. ++++...++.+++..|+||-.+++-
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 4566666644 7788999999999999999998884
No 429
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.64 E-value=0.17 Score=52.83 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=60.5
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
++|.+||+|.+|.+.....++ .| .+|+++|.+++..+.+++ .| ... . ...| ....+...|+||++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~--~G~~~~V~~~d~~~~~~~~a~~----~g-~~~--~-~~~~---~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRE--RGLAREVVAVDRRAKSLELAVS----LG-VID--R-GEED---LAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cCCCCEEEEEECChhHHHHHHH----CC-CCC--c-ccCC---HHHHhcCCCEEEEC
Confidence 689999999988765555442 34 579999999988776653 45 211 0 1122 22234578999987
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
.-. ....++++.+.+.++++.+++.
T Consensus 71 vp~----~~~~~vl~~l~~~~~~~~ii~d 95 (735)
T PRK14806 71 VPV----LAMEKVLADLKPLLSEHAIVTD 95 (735)
T ss_pred CCH----HHHHHHHHHHHHhcCCCcEEEE
Confidence 532 4567888899998888766553
No 430
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.60 E-value=0.41 Score=42.13 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=56.9
Q ss_pred CCCEEEEeccCCChhhHH-HHHhhcCCC-cEEEEEeCC-------------------hHHHHHHHHHHHhcCCCCCCeEE
Q 042119 130 QPKKVAFVGSGPMPLTSI-IMAKHHLTS-THFDNFDID-------------------EAANDVARSIVASDAEFEGRMKF 188 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g-~~V~~iDid-------------------~~ai~~Ar~~~~~~g~l~~~i~f 188 (286)
..++|+.||||.+|-... .|++ .| .+++.+|.| ..-.+.+.+.+++.. -.-+++.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~---~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~ 95 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG---AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTA 95 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH---cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 468999999997665433 3333 55 489999988 233344444555544 1234444
Q ss_pred EEccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119 189 LTRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA 246 (286)
Q Consensus 189 ~~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~ 246 (286)
+...+.+ +...+.+||+|+.+.- +.+.+. .+.+..+.. +-.++.-...|...
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d---~~~~r~-~l~~~~~~~--~ip~i~~~~~g~~G 149 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD---NFATRY-LINDACVAL--GTPLISAAVVGFGG 149 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC---CHHHHH-HHHHHHHHc--CCCEEEEEeccCeE
Confidence 4434322 2234568999986632 123443 344443332 23344444444444
No 431
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.60 E-value=0.097 Score=48.94 Aligned_cols=97 Identities=9% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccccchhhcCCCc
Q 042119 129 VQPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDIMEVKEQLGEY 203 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~~~~~~~l~~f 203 (286)
...++|+.||+|.+|.+--. |++ .|..|+.+..++. +. +...|. ...+..+....+.+.+.....|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPC 73 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCC
Confidence 34579999999988865333 333 6789999999863 21 233341 0011111111111112234579
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|+|+++.= . .+-.++++.+...++|++.++.
T Consensus 74 D~vilavK-~---~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 74 DWVLVGLK-T---TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CEEEEEec-C---CChHhHHHHHhhhcCCCCEEEE
Confidence 99998732 2 1224678888888999887654
No 432
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.58 E-value=0.36 Score=46.96 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD 204 (286)
...++|+.+|+|.+|.+....-. ..|..|+.+|.|++.++..++. + ..+.++.||+.+.. ....++|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~----~---~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEE----L---PNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHH----C---CCCeEEECCCCCHHHHHhcCCccCC
Confidence 34689999999988776444333 2588999999999988776653 2 24678999987532 1345788
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.|+... +- ....-+...+.+.+.+. .++++
T Consensus 300 ~vi~~~--~~--~~~n~~~~~~~~~~~~~-~ii~~ 329 (453)
T PRK09496 300 AFIALT--ND--DEANILSSLLAKRLGAK-KVIAL 329 (453)
T ss_pred EEEECC--CC--cHHHHHHHHHHHHhCCC-eEEEE
Confidence 887432 11 12223344455666655 45554
No 433
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.54 E-value=0.4 Score=44.46 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=63.3
Q ss_pred hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc---ch-hhc
Q 042119 125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM---EV-KEQ 199 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~---~~-~~~ 199 (286)
.....++.+||..|+ |++|..++.+|++ .|++|++++.+. ..+. ++..| . + .+...+-. +. ...
T Consensus 172 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~--~g~~vi~~~~~~-~~~~----~~~~g-~-~--~~~~~~~~~~~~~~~~~ 240 (350)
T cd08274 172 RAGVGAGETVLVTGASGGVGSALVQLAKR--RGAIVIAVAGAA-KEEA----VRALG-A-D--TVILRDAPLLADAKALG 240 (350)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHh--cCCEEEEEeCch-hhHH----HHhcC-C-e--EEEeCCCccHHHHHhhC
Confidence 345678899999998 9999999999994 789999998553 3333 34466 2 2 22211110 10 111
Q ss_pred CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-..+|+|+-+. + . ..+....+.|+++|.++.-.
T Consensus 241 ~~~~d~vi~~~--g----~--~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 241 GEPVDVVADVV--G----G--PLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CCCCcEEEecC--C----H--HHHHHHHHHhccCCEEEEec
Confidence 23699998543 2 1 25778889999999988643
No 434
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.14 Score=50.37 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=60.0
Q ss_pred CCEEEEeccCCChhhHHHHHhh----cCCCcEEEEEeCChHHHH----HHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKH----HLTSTHFDNFDIDEAAND----VARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~----~~~g~~V~~iDid~~ai~----~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
.-+|.+||+|...++-+.+.-- .+++.++.-+|+|+++.+ .+++++++.|. . +++.... +....+.+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~-~--~kv~~tt--d~~eAl~g 77 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA-P--VKVEATT--DRREALEG 77 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC-C--eEEEEec--CHHHHhcC
Confidence 4589999999866555444321 468899999999999999 99999999993 3 6665443 34567788
Q ss_pred cceeehhhhccC
Q 042119 203 YDCIFLAALVGM 214 (286)
Q Consensus 203 fD~V~~aalvg~ 214 (286)
.|+|+.+..||.
T Consensus 78 AdfVi~~~rvG~ 89 (442)
T COG1486 78 ADFVITQIRVGG 89 (442)
T ss_pred CCEEEEEEeeCC
Confidence 999998888854
No 435
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=94.54 E-value=0.16 Score=47.07 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=60.4
Q ss_pred CCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 130 QPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 130 ~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
++.+|+..| +|++|..++.+|++ .|++|+++..+ +. ++.++..| ...-+.....+..+.......+|+|+.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~--~G~~v~~~~~~-~~----~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~vd~vi~ 233 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKA--WGAHVTTTCST-DA----IPLVKSLG-ADDVIDYNNEDFEEELTERGKFDVILD 233 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH--CCCeEEEEeCc-ch----HHHHHHhC-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence 489999999 69999999999984 78999888754 33 34445566 321111111111111112346999985
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+. + .. .+....+.++++|+++.-.
T Consensus 234 ~~--g----~~--~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 234 TV--G----GD--TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred CC--C----hH--HHHHHHHHhccCCEEEEec
Confidence 42 2 11 5677889999999998753
No 436
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.53 E-value=0.23 Score=41.95 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred CEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
++|.+||.|.+|.. +|++ ...|..|+++|++++..+...+ .| ++ .+.+..++. ...|+||.+-
T Consensus 2 ~~Ig~IGlG~mG~~---~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g-----~~-~~~s~~e~~---~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGLGNMGSA---MARNLAKAGYEVTVYDRSPEKAEALAE----AG-----AE-VADSPAEAA---EQADVVILCV 65 (163)
T ss_dssp BEEEEE--SHHHHH---HHHHHHHTTTEEEEEESSHHHHHHHHH----TT-----EE-EESSHHHHH---HHBSEEEE-S
T ss_pred CEEEEEchHHHHHH---HHHHHHhcCCeEEeeccchhhhhhhHH----hh-----hh-hhhhhhhHh---hcccceEeec
Confidence 48999999987754 3332 2268999999999977655443 23 22 233443433 3469998653
Q ss_pred hccCChhHHHHHHHH--HHhhccCCcEEEEee
Q 042119 211 LVGMSKEEKLTILGH--IRKYMKDGGILLVRS 240 (286)
Q Consensus 211 lvg~~~~~k~~vl~~--l~~~l~pgg~lv~r~ 240 (286)
. +.+.-.+++.. +...+++|.+++--+
T Consensus 66 ~---~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 66 P---DDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp S---SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred c---cchhhhhhhhhhHHhhccccceEEEecC
Confidence 2 22444578888 889999998888754
No 437
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=94.52 E-value=0.25 Score=45.09 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=65.4
Q ss_pred CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC--CC
Q 042119 127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL--GE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l--~~ 202 (286)
...++.+|+..| +|++|..++.+|++ .|.+|++++.+++..+.+++ .| ...-+.....+..+ +.... .+
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~ 211 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKA--AGATVVGAAGGPAKTALVRA----LG-ADVAVDYTRPDWPDQVREALGGGG 211 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-CCEEEecCCccHHHHHHHHcCCCC
Confidence 457789999999 68999999999994 78999999999988766643 56 22111111112111 11111 35
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+-+. | .+ ......+.++++|.++.-.
T Consensus 212 ~d~vl~~~--g----~~--~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 212 VTVVLDGV--G----GA--IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred ceEEEECC--C----hH--hHHHHHHHhccCcEEEEEe
Confidence 99998542 2 22 3477888999999988754
No 438
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.51 E-value=0.17 Score=49.18 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=54.3
Q ss_pred CEEEEeccCCChhhHHHH-HhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcceee
Q 042119 132 KKVAFVGSGPMPLTSIIM-AKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYDCIF 207 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~l-A~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V~ 207 (286)
++||.||||..|.+.... |+ -...+|+..|.+++..+.+... -+ .+++++.-|+.+... -+.++|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~---~~---~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAEL---IG---GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhh---cc---ccceeEEecccChHHHHHHHhcCCEEE
Confidence 689999999998887776 54 2338999999999888777665 22 378899999887533 346889998
Q ss_pred hhh
Q 042119 208 LAA 210 (286)
Q Consensus 208 ~aa 210 (286)
.++
T Consensus 74 n~~ 76 (389)
T COG1748 74 NAA 76 (389)
T ss_pred EeC
Confidence 664
No 439
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.50 E-value=0.23 Score=46.20 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=57.1
Q ss_pred EEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119 133 KVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL 211 (286)
Q Consensus 133 ~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal 211 (286)
+|.+||+|.+|..-. .+++ .|.+|+++|.+++..+..+ ..|. + .+.+..++....+..|+|+++.-
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~-~~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----KLGI-----T-ARHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----HCCC-----e-ecCCHHHHHHhCCCCCEEEEEec
Confidence 799999998876432 2333 6789999999998766543 3451 1 12343333332223688886532
Q ss_pred ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 212 VGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.+.-..+++.+...+++|.+++--
T Consensus 69 ---~~~~~~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 69 ---AGEVTESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred ---CchHHHHHHHHHhccCCCCCEEEEC
Confidence 1124456778888888888877664
No 440
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.49 E-value=0.55 Score=40.98 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=62.7
Q ss_pred CCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----------
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---------- 198 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---------- 198 (286)
++++|+..|++ .++.. .+++. ...|.+|++++.+++..+...+..... .++.++.+|+.+...
T Consensus 4 ~~~~vlItGa~-g~iG~-~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGY-AVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcEEEEECCC-chHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 46799999985 33332 23332 237999999999988766554433332 258889999875221
Q ss_pred cCCCcceeehhhhccC--ChhH--------------HHHHHHHHHhhccCCcEEEEee
Q 042119 199 QLGEYDCIFLAALVGM--SKEE--------------KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 199 ~l~~fD~V~~aalvg~--~~~~--------------k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+..|.++..+.... ...+ ...+++.+.+.|+++|.+++-+
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1234687775543210 1111 1234666777778888777765
No 441
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.48 E-value=0.26 Score=45.43 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=55.0
Q ss_pred CEEEEeccCCChhhHHH-HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 132 KKVAFVGSGPMPLTSII-MAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~-lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.+|.|||||.+|.+-.. |.+. +....+|+++|++++..+.+.+ ..| ++. +.|..+. ....|+||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g-----~~~-~~~~~e~---~~~aDiIiLa 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG-----ITI-TTNNNEV---ANSADILILS 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC-----cEE-eCCcHHH---HhhCCEEEEE
Confidence 48999999988765332 1121 1134579999999877554333 345 222 2343332 2467999987
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.- +..-..+++.+...++++. +++.
T Consensus 71 vk----P~~~~~vl~~l~~~~~~~~-lvIS 95 (272)
T PRK12491 71 IK----PDLYSSVINQIKDQIKNDV-IVVT 95 (272)
T ss_pred eC----hHHHHHHHHHHHHhhcCCc-EEEE
Confidence 43 2556678888888777664 4444
No 442
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.46 E-value=0.072 Score=52.76 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE 166 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~ 166 (286)
..+++|+.||+||.|+++...+++ .|.+|+.+|..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 356899999999999999887773 789999999765
No 443
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.44 E-value=0.15 Score=47.94 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=54.7
Q ss_pred CCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhc----CC-CCCCeEEEEccccchhhcCCCc
Q 042119 130 QPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASD----AE-FEGRMKFLTRDIMEVKEQLGEY 203 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~----g~-l~~~i~f~~~D~~~~~~~l~~f 203 (286)
..++|.+||+|.+|..-.. |++ .|.+|+.+|.+++..+..++.-... |. +..++. .+.|. .......
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~---~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~-~~~~~---~e~~~~a 75 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAAS---KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELY-PTADP---EEALAGA 75 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeE-EeCCH---HHHHcCC
Confidence 3568999999998865433 333 6789999999988766555431100 10 001121 12232 2223578
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
|+|+++.- .. .++.+.+.++|+..++.
T Consensus 76 D~Vi~~v~------~~--~~~~v~~~l~~~~~vi~ 102 (328)
T PRK14618 76 DFAVVAVP------SK--ALRETLAGLPRALGYVS 102 (328)
T ss_pred CEEEEECc------hH--HHHHHHHhcCcCCEEEE
Confidence 99987632 11 24666677888765553
No 444
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=94.44 E-value=0.21 Score=46.26 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=67.1
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCCc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGEY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~f 203 (286)
...++.+||..|+|.+|..++.+|++ .|.+|+++..+++..+..++ .| ...-+.....+..+ +.. ....+
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARE----LG-ADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHH----hC-CCEEecCcccCHHHHHHHHhCCCCC
Confidence 45778899999999889999999994 78999999999888777654 34 21222222222111 111 11358
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+++.+.. . ...+..+.+.|+++|.++.-.
T Consensus 229 d~vld~~g------~-~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATG------N-PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCC------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 99986532 1 135678889999999988643
No 445
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.43 E-value=0.17 Score=47.86 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCCEEEEecc-CCChhhHHHHHhhcCCCc-----EEEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119 130 QPKKVAFVGS-GPMPLTSIIMAKHHLTST-----HFDNFDIDEA---ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL 200 (286)
Q Consensus 130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~-----~V~~iDid~~---ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l 200 (286)
+|.+|..||+ |..|.+..+.......-. +++-+|+.+. +...|..+......+..++++..+| ..++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~ 76 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP----NVAF 76 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc----HHHh
Confidence 4789999999 998888665433111122 7999999543 5666777666542122345554333 3456
Q ss_pred CCcceeehhhhc----cCChhH----HHHHHHHHHhhc---c-CCcEEEEee
Q 042119 201 GEYDCIFLAALV----GMSKEE----KLTILGHIRKYM---K-DGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalv----g~~~~~----k~~vl~~l~~~l---~-pgg~lv~r~ 240 (286)
.+.|+|++.+-+ |++..+ ..++++.+.+.+ . |.|++++-+
T Consensus 77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 789999987755 443322 233444444433 4 588887765
No 446
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=94.42 E-value=0.23 Score=44.46 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=64.6
Q ss_pred CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hhh--cC
Q 042119 127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VKE--QL 200 (286)
Q Consensus 127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~~--~l 200 (286)
...++.+|+..| +|++|..++.+|+. .|++|++++.+++..+.+++ .| . +.+ +... +..+ +.. .-
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~~-~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKA--LGATVIGTVSSEEKAELARA----AG-A-DHV-INYRDEDFVERVREITGG 203 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----CC-C-CEE-EeCCchhHHHHHHHHcCC
Confidence 456789999999 68999999999984 78999999999988766643 56 2 211 1111 1111 111 11
Q ss_pred CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
..+|+|+-+. + . ..+....+.|+++|.++.-.
T Consensus 204 ~~~d~vl~~~--~----~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 204 RGVDVVYDGV--G----K--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCeeEEEECC--C----c--HhHHHHHHhhccCcEEEEEe
Confidence 3599988542 2 1 25567788899999988653
No 447
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.38 E-value=0.18 Score=49.56 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=55.5
Q ss_pred CEEEEeccCCChhhHHHHHhh-----cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119 132 KKVAFVGSGPMPLTSIIMAKH-----HLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLGE 202 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~-----~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~ 202 (286)
.||.+||+|.. +|...+..- .+++.+|+-+|+|+++++. |++++++.| ..+++... ++....+.+
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g---~~~~v~~t--tD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG---ADIKFEKT--MDLEDAIID 74 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC---CCeEEEEe--CCHHHHhCC
Confidence 37999999975 775544321 2678999999999998886 677777777 24555432 334566778
Q ss_pred cceeehhhhccC
Q 042119 203 YDCIFLAALVGM 214 (286)
Q Consensus 203 fD~V~~aalvg~ 214 (286)
.|+|+...-+|.
T Consensus 75 ADfVi~~irvGg 86 (425)
T cd05197 75 ADFVINQFRVGG 86 (425)
T ss_pred CCEEEEeeecCC
Confidence 999998877754
No 448
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.38 E-value=0.21 Score=45.52 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=61.4
Q ss_pred EEEecc-CCChhhHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 134 VAFVGS-GPMPLTSIIMAKHHL--TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 134 VL~IG~-G~lp~tai~lA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
|..||+ |.+|.+......... ...+++-+|++++.++....-+++.-......++...+ +...++.+.|+|++.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~--d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD--DPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC--chHHHhCCCCEEEECC
Confidence 468999 877765554332112 23799999999977776666555432111123443222 1234456899999865
Q ss_pred hc----cC--------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 211 LV----GM--------SKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 211 lv----g~--------~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-+ |+ +.+-+.++.+.+.+.- |+|.+++-+
T Consensus 79 ~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t 119 (263)
T cd00650 79 GVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS 119 (263)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 33 11 2234667777777664 888877754
No 449
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=94.34 E-value=0.16 Score=47.19 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcC--CCc
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQL--GEY 203 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l--~~f 203 (286)
...++++|+..|+|++|..++.+|++ .|.+|++++.+++..+.+++ .| ...-+.... .|..+....+ +.+
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASA--LGARVIAVDIDDDKLELARE----LG-AVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHH----hC-CCEEEccccchhHHHHHHHHhCCCC
Confidence 45678999999999999999999994 68999999999988776643 56 321122221 1211111111 269
Q ss_pred ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+|+-. ++ . ...+....+.|+++|.++.-.
T Consensus 235 d~vi~~--~g---~--~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 235 HVSVDA--LG---I--PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred CEEEEc--CC---C--HHHHHHHHHHhhcCCEEEEeC
Confidence 998843 32 1 235667888999999988754
No 450
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=0.48 Score=41.88 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=77.9
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchh------hcC-
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVK------EQL- 200 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~------~~l- 200 (286)
.++.+|||+|+.|+..|-....+ ..|.+-|.|||+=+- .+. ..++++++ |+.+-. ..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr-~~p~g~v~gVDllh~-----------~p~--~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQR-VNPNGMVLGVDLLHI-----------EPP--EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHh-hCCCceEEEEeeeec-----------cCC--CCcccccccccCCHHHHHHHHHhCC
Confidence 78999999999998776555444 458899999998421 221 23455555 544311 111
Q ss_pred -CCcceeehhhh---ccCChhHHHH-------HHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEEecC
Q 042119 201 -GEYDCIFLAAL---VGMSKEEKLT-------ILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSAVHP 268 (286)
Q Consensus 201 -~~fD~V~~aal---vg~~~~~k~~-------vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~~~P 268 (286)
...|+|+-+-. -|...-+-.. ++.--...++|+|.+++....|--.-. ++. ++ .-|+.+.++.|
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~---l~r-~l~~~f~~Vk~vKP 209 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL---LQR-RLQAVFTNVKKVKP 209 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH---HHH-HHHHHhhhcEeeCC
Confidence 23566653321 1222222222 333334567899999998755521100 011 22 35888888888
Q ss_pred cccceee---eEEEeecCC
Q 042119 269 NDDVINS---VVLVRNSQG 284 (286)
Q Consensus 269 ~~~vins---vi~~r~~~~ 284 (286)
...--+| +.++|+.+|
T Consensus 210 ~Asr~eS~E~y~v~~~~k~ 228 (232)
T KOG4589|consen 210 DASRDESAETYLVCLNFKG 228 (232)
T ss_pred ccccccccceeeeeeeccC
Confidence 7654443 677776544
No 451
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.23 Score=47.83 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=78.4
Q ss_pred CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeehh
Q 042119 131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFLA 209 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~a 209 (286)
+.+|+|-=||+ |.=+|..|.. .+..+|+.=|++|+|+++.+++++... .++ ...+..|+..+.... ..||+|=++
T Consensus 53 ~~~v~Dalsat-GiRgIRya~E-~~~~~v~lNDisp~Avelik~Nv~~N~-~~~-~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSAT-GIRGIRYAVE-TGVVKVVLNDISPKAVELIKENVRLNS-GED-AEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeeccccc-chhHhhhhhh-cCccEEEEccCCHHHHHHHHHHHHhcC-ccc-ceeecchHHHHHHhcCCCccEEecC
Confidence 88999999984 8889999984 333389999999999999999999873 234 444448887776653 469998766
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
-+ | ....+++...+.++.||+|.+.-
T Consensus 129 PF-G----SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PF-G----SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-C----CCchHHHHHHHHhhcCCEEEEEe
Confidence 54 3 34468888999999999998863
No 452
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.4 Score=43.00 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=55.2
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--h--cCCCcceee
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--E--QLGEYDCIF 207 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~--~l~~fD~V~ 207 (286)
++++.||+|.+|.+...... ..|..|+.||.|++.++....- .. ....+++|+.+.. . ....+|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~~--~~-----~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLAD--EL-----DTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhhh--hc-----ceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 57999999999987554443 3688999999999987763331 12 3577888887632 2 234799988
Q ss_pred hhhhccCChhHHHHHHHHHHhh
Q 042119 208 LAALVGMSKEEKLTILGHIRKY 229 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~ 229 (286)
.+.. -+ .-.-++-.++..
T Consensus 72 a~t~--~d--~~N~i~~~la~~ 89 (225)
T COG0569 72 AATG--ND--EVNSVLALLALK 89 (225)
T ss_pred EeeC--CC--HHHHHHHHHHHH
Confidence 5532 22 222355555544
No 453
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=94.27 E-value=0.1 Score=49.88 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 042119 127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS 174 (286)
Q Consensus 127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~ 174 (286)
.+.++.+|+..|+ |++|..++.+|++ .|+++++++.+++..+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHH
Confidence 4577899999997 9999999999994 79999999999998888876
No 454
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.26 E-value=0.19 Score=50.36 Aligned_cols=99 Identities=9% Similarity=0.166 Sum_probs=64.5
Q ss_pred CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
.+|-+||.|.||.. +.-|++ .|.+|+++|++++..+...+.....|. ..+ ..+.++.++...+...|+||++.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~---~G~~V~V~NRt~~k~~~l~~~~~~~Ga--~~~-~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERAKKEGN--LPL-YGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHhhhhcCC--ccc-ccCCCHHHHHhcCCCCCEEEEEC
Confidence 57999999988854 223333 789999999999887654443222251 111 23345556665666689999753
Q ss_pred hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 211 LVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.-+ +.=..+++.+...|+||.++|--
T Consensus 81 ~~~---~aV~~Vi~gl~~~l~~G~iiID~ 106 (493)
T PLN02350 81 KAG---APVDQTIKALSEYMEPGDCIIDG 106 (493)
T ss_pred CCc---HHHHHHHHHHHhhcCCCCEEEEC
Confidence 211 33346778889999998877653
No 455
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.26 E-value=0.21 Score=46.38 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=66.1
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhh--cCC
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKE--QLG 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~--~l~ 201 (286)
....++.+|+..|+|++|..++.+|++ .|.. |++++.+++..+.+++ +| ...-+....-+. .++.. .-.
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~v~~~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKR--LGAERIIAMSRHEDRQALARE----FG-ATDIVAERGEEAVARVRELTGGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CceEecCCcccHHHHHHHhcCCC
Confidence 455778999999999999999999994 6774 9999999876655554 55 211122211111 11111 112
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++|+++.+ ++ . ...+....+.++++|.++.-+
T Consensus 237 ~~d~il~~--~g----~-~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 237 GADAVLEC--VG----T-QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCEEEEC--CC----C-HHHHHHHHHhhccCCEEEEec
Confidence 58988844 22 1 247788899999999998765
No 456
>PLN02712 arogenate dehydrogenase
Probab=94.25 E-value=0.23 Score=51.65 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
+.+.+|.+||+|.+|.+.....+ ..|.+|+++|.+... +. +...| +.+ ..|..++.. ...|+|++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----A~~~G-----v~~-~~d~~e~~~--~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLI--SQGHTVLAHSRSDHS-LA----ARSLG-----VSF-FLDPHDLCE--RHPDVILL 114 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHH-HH----HHHcC-----CEE-eCCHHHHhh--cCCCEEEE
Confidence 45679999999988765433322 257899999998543 22 33456 222 334332211 35899998
Q ss_pred hhhccCChhHHHHHHHHHH-hhccCCcEEE
Q 042119 209 AALVGMSKEEKLTILGHIR-KYMKDGGILL 237 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~-~~l~pgg~lv 237 (286)
+.-+ ..-.++++.+. ..++||.+|+
T Consensus 115 avP~----~~~~~vl~~l~~~~l~~g~iVv 140 (667)
T PLN02712 115 CTSI----ISTENVLKSLPLQRLKRNTLFV 140 (667)
T ss_pred cCCH----HHHHHHHHhhhhhcCCCCeEEE
Confidence 8543 45567777775 5688887554
No 457
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.22 E-value=0.59 Score=45.08 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 130 QPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 130 ~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
...+|..|| .|.+|.+.....+ ..|..|+++|.++. .+.. ....+.|+|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~--~~G~~V~~~d~~~~-----------------------~~~~---~~~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLT--LSGYQVRILEQDDW-----------------------DRAE---DILADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHH--HCCCeEEEeCCCcc-----------------------hhHH---HHHhcCCEEEE
Confidence 447999999 8988876544333 26789999998631 0111 11246899998
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.-+ ....++++.+.+ ++||.+|+--
T Consensus 149 avP~----~~~~~~~~~l~~-l~~~~iv~Dv 174 (374)
T PRK11199 149 SVPI----HLTEEVIARLPP-LPEDCILVDL 174 (374)
T ss_pred eCcH----HHHHHHHHHHhC-CCCCcEEEEC
Confidence 8654 456778888888 7777766543
No 458
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.21 E-value=0.14 Score=46.83 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=66.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhh--c--CCCcEEEEEeCC--------------------------hHHHHHHHHHHHh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKH--H--LTSTHFDNFDID--------------------------EAANDVARSIVAS 178 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~--~--~~g~~V~~iDid--------------------------~~ai~~Ar~~~~~ 178 (286)
.-|..|++.|+-- |-|++.++.- . .++-+|.++|-= ....+..++++++
T Consensus 73 ~vpGdivE~GV~r-Ggs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 73 DVPGDIVECGVWR-GGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TS-SEEEEE--TT-SHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred CCCeEEEEEeeCC-CHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 5678999999975 5566665431 1 245567777731 1244555566666
Q ss_pred cCCCCCCeEEEEccccchhhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 179 DAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 179 ~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
.|.+.++++|+.|+..+-.... ..+-++.++.-+ -++-..+|+.+..+|.|||+|++.+.
T Consensus 152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---YesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 6755679999999986544322 245556665433 25666899999999999999999874
No 459
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=94.21 E-value=0.19 Score=47.50 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=66.4
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhc--CC
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQ--LG 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~--l~ 201 (286)
..+.++.+||..|+|++|..++.+|++ .|++ |++++.+++..+.+++ +| ...-+.....+..+ +... -.
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~----~g-~~~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARR----FG-ATHTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----hC-CeEEeCCCCccHHHHHHHHcCCC
Confidence 345788999999999999999999994 6786 9999999888776643 45 21111111112111 1111 13
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+|+++-+.. . ...+....+.++++|+++.-.
T Consensus 251 ~vd~vld~~~------~-~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 251 GADYAFEAVG------R-AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCEEEEcCC------C-hHHHHHHHHHhhcCCeEEEEe
Confidence 5998874431 1 246778899999999988754
No 460
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.17 E-value=0.29 Score=42.95 Aligned_cols=77 Identities=9% Similarity=0.123 Sum_probs=52.1
Q ss_pred CCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------h
Q 042119 130 QPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------E 198 (286)
Q Consensus 130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------~ 198 (286)
++++++.+|+ |.+|........ ..|++|+.+|.+++..+.+.+.++..| .++.++..|+.+.. .
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLA--QKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4679999997 555554433222 268999999999987776666666555 57888899976521 1
Q ss_pred cCCCcceeehhhh
Q 042119 199 QLGEYDCIFLAAL 211 (286)
Q Consensus 199 ~l~~fD~V~~aal 211 (286)
.++.+|+|+..+.
T Consensus 79 ~~~~id~vi~~ag 91 (253)
T PRK08217 79 DFGQLNGLINNAG 91 (253)
T ss_pred HcCCCCEEEECCC
Confidence 2245798876543
No 461
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.17 E-value=0.61 Score=41.27 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=57.6
Q ss_pred CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS-IVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
++|.+|| +|.+|.+...... ..|.+|+.++.+++..+...+ .....+..+-.++....+.. ......|+|+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~--~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~---ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLA--KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNA---EAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHH--hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChH---HHHhcCCEEEEE
Confidence 4799997 8988765433322 267899999999987655443 22222210111223222322 233578999987
Q ss_pred hhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119 210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA 244 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~ 244 (286)
.-- ..-..+++.+...++ + .+++.-.+|.
T Consensus 76 vp~----~~~~~~l~~l~~~l~-~-~vvI~~~ngi 104 (219)
T TIGR01915 76 VPW----DHVLKTLESLRDELS-G-KLVISPVVPL 104 (219)
T ss_pred CCH----HHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence 432 334466677766654 3 5666555553
No 462
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.16 E-value=0.36 Score=45.84 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=66.1
Q ss_pred CCCCEEEEecc-CCChhhHHHHHhhcCCCc-----EEEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119 129 VQPKKVAFVGS-GPMPLTSIIMAKHHLTST-----HFDNFDIDEA---ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ 199 (286)
Q Consensus 129 ~~~~~VL~IG~-G~lp~tai~lA~~~~~g~-----~V~~iDid~~---ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~ 199 (286)
+.|-+|..||+ |..|.+..........-. +++-+|+.+. +...|..+..........+++..+| ..+
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~ 76 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDP----EEA 76 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecCh----HHH
Confidence 35789999998 998888655443111112 7999999642 5677777766552122345444333 345
Q ss_pred CCCcceeehhhhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119 200 LGEYDCIFLAALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 200 l~~fD~V~~aalv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+.|+|++.+-+ ||+..+ -.++...+.++-.|.|++++-+
T Consensus 77 ~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 6789999887755 444433 2344555555533488888765
No 463
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=94.15 E-value=0.23 Score=46.34 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhhcC-CCcce
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKEQL-GEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~~l-~~fD~ 205 (286)
.++++|+..|+|++|..++.+|++ .|+ +|+.++.+++..+.+++ .| ...-+.....+.. .+.... +++|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKA--LGPANIIVVDIDEAKLEAAKA----AG-ADVVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CcEEecCCCccHHHHHHHHhCCCCcE
Confidence 467899999999999999999994 688 79999999888777654 45 2111111111110 111111 25899
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+-+. | .. ..+....+.|+++|.++.-+
T Consensus 247 vid~~--g---~~--~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 247 VIDFV--N---NS--ATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EEECC--C---CH--HHHHHHHHHhhcCCeEEEEC
Confidence 88442 1 11 36788899999999998654
No 464
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.11 E-value=0.12 Score=55.77 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-----------------AANDVARSIVASDAEFEGRMKFLTR 191 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~g~l~~~i~f~~~ 191 (286)
..+++|+.||+||-|+++.....+ .|..||.+|..+ +.++.-.+.++..| ++|.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G-----v~f~~n 376 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG-----GRFVKN 376 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc-----CeEEEe
Confidence 457999999999999998766553 789999998653 33444445566666 344433
Q ss_pred ccc--ch-hhcC-C-Ccceeehhhh
Q 042119 192 DIM--EV-KEQL-G-EYDCIFLAAL 211 (286)
Q Consensus 192 D~~--~~-~~~l-~-~fD~V~~aal 211 (286)
-.. ++ ..++ . +||.||++.-
T Consensus 377 ~~vG~dit~~~l~~~~yDAV~LAtG 401 (944)
T PRK12779 377 FVVGKTATLEDLKAAGFWKIFVGTG 401 (944)
T ss_pred EEeccEEeHHHhccccCCEEEEeCC
Confidence 211 11 1122 2 6999998754
No 465
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=94.10 E-value=0.23 Score=45.55 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=63.6
Q ss_pred CCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc--cchhh-cCCCcce
Q 042119 130 QPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI--MEVKE-QLGEYDC 205 (286)
Q Consensus 130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~--~~~~~-~l~~fD~ 205 (286)
.+.+|+..|+ |++|..++.+|++ .|++|++++.+++..+.+++ +| . +.+ +...+. ..+.. .-..+|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~v-~~~~~~~~~~~~~~~~~~~d~ 216 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAK--LGYEVVASTGKADAADYLKK----LG-A-KEV-IPREELQEESIKPLEKQRWAG 216 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHH----cC-C-CEE-EcchhHHHHHHHhhccCCcCE
Confidence 4679999998 9999999999994 68999999999987666644 56 2 211 111111 11111 1135899
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
|+-+. | . ..++...+.|+++|+++.-..
T Consensus 217 vld~~--g----~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 217 AVDPV--G----G--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EEECC--c----H--HHHHHHHHHhhcCCEEEEEee
Confidence 88442 2 2 256778889999999988753
No 466
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.09 E-value=0.1 Score=49.34 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--EccccchhhcC--CC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL--TRDIMEVKEQL--GE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~--~~D~~~~~~~l--~~ 202 (286)
.+.++++|+..|.|..|++.+.-|+ +.-..+++|||++++--++|+++ | ..+=|+-. +..+.+...++ .+
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gak-a~GAsrIIgvDiN~~Kf~~ak~f----G-aTe~iNp~d~~~~i~evi~EmTdgG 262 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAK-AAGASRIIGVDINPDKFEKAKEF----G-ATEFINPKDLKKPIQEVIIEMTDGG 262 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHH-hcCcccEEEEecCHHHHHHHHhc----C-cceecChhhccccHHHHHHHHhcCC
Confidence 3578999999999999999999999 45557899999999999999884 5 22111111 11233333333 46
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEe
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVR 239 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r 239 (286)
+|.-|.+.- ..+++.+.....+.| |.-++-
T Consensus 263 vDysfEc~G-------~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 263 VDYSFECIG-------NVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred ceEEEEecC-------CHHHHHHHHHHhhcCCCeEEEE
Confidence 888886532 123555555555677 665554
No 467
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.09 E-value=0.12 Score=49.20 Aligned_cols=92 Identities=22% Similarity=0.178 Sum_probs=60.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.+++|..||.|.+|......++ ..|.+|.++|.++.... ....| +.+ .+.. .-+...|+|++
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~-----~~~~~-----~~~--~~l~---ell~~aDiV~l 210 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAK--GFGMRILYYSRTRKPEA-----EKELG-----AEY--RPLE---ELLRESDFVSL 210 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHH--HCCCEEEEECCCCChhh-----HHHcC-----CEe--cCHH---HHHhhCCEEEE
Confidence 35899999999999987666665 36899999999875421 12233 122 2332 33457899997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.-. +.+.+.-+-++....||||++|+--
T Consensus 211 ~lP~--t~~T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 211 HVPL--TKETYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred eCCC--ChHHhhccCHHHHhcCCCCeEEEEC
Confidence 7532 3333433446788899999888764
No 468
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.07 E-value=0.22 Score=45.93 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=54.9
Q ss_pred CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
++|.+||+|.+|.. +..+++ .|.+|+++|.+++..+.+. ..| +.+ +.+..+ ...+.|+|+++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~----~~g-----~~~-~~~~~e---~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVI----AAG-----AET-ASTAKA---VAEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHH----HCC-----Cee-cCCHHH---HHhcCCEEEEeC
Confidence 47999999998865 344444 7889999999998766543 234 111 223322 224689999774
Q ss_pred hccCChhHHHHHH---HHHHhhccCCcEEEE
Q 042119 211 LVGMSKEEKLTIL---GHIRKYMKDGGILLV 238 (286)
Q Consensus 211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~ 238 (286)
... ..-..++ +.+.+.+++|.+++-
T Consensus 67 p~~---~~~~~v~~~~~~~~~~~~~g~iiid 94 (296)
T PRK11559 67 PNS---PHVKEVALGENGIIEGAKPGTVVID 94 (296)
T ss_pred CCH---HHHHHHHcCcchHhhcCCCCcEEEE
Confidence 321 1222333 456778888877764
No 469
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=94.06 E-value=0.35 Score=43.51 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=64.4
Q ss_pred CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCC
Q 042119 127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~ 202 (286)
...++.+|+..|+ |++|..++.+|++ .|++|++++.+++..+.+++ .| ...-+.....+..+... .-..
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~~ 208 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARA----LG-ADHVIDYRDPDLRERVKALTGGRG 208 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHH----cC-CceeeecCCccHHHHHHHHcCCCC
Confidence 4567899999998 8899998889984 78999999999988776644 45 21111111112111111 1135
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++.+. + . ..+....+.++++|.++...
T Consensus 209 ~d~v~~~~--g----~--~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 209 VDVVYDPV--G----G--DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred cEEEEECc--c----H--HHHHHHHHhhccCCEEEEEc
Confidence 89888542 2 1 24556778889999988754
No 470
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=94.04 E-value=0.41 Score=42.80 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCcc
Q 042119 128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYD 204 (286)
Q Consensus 128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD 204 (286)
..++.+|+..|+ |++|..++.+|+. .|.+|++++.++ ..+.+ +..| .. .+......+.. ..-..+|
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~-~~~~~----~~~g-~~---~~~~~~~~~~~~~~~~~~~d 210 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKA--RGARVIATASAA-NADFL----RSLG-AD---EVIDYTKGDFERAAAPGGVD 210 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEecch-hHHHH----HHcC-CC---EEEeCCCCchhhccCCCCce
Confidence 577899999996 8999999999984 789999998766 54444 3456 21 12211111111 1123589
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+++-+. + . .......+.++++|.++.-.
T Consensus 211 ~v~~~~--~----~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 211 AVLDTV--G----G--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred EEEECC--c----h--HHHHHHHHHHhcCcEEEEEc
Confidence 888542 2 1 15677888999999988653
No 471
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.03 E-value=1.2 Score=39.02 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=48.9
Q ss_pred CCCEEEEecc-CCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---------
Q 042119 130 QPKKVAFVGS-GPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------- 198 (286)
Q Consensus 130 ~~~~VL~IG~-G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------- 198 (286)
.+++|+..|+ |.+|.... .|++ .|.+|++++.+++......+.+...+ .++.++.+|..+...
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVRDRAALKAAVAAGV 78 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678999995 43333222 2333 68999999999877666555555544 468999999876321
Q ss_pred -cCCCcceeehhh
Q 042119 199 -QLGEYDCIFLAA 210 (286)
Q Consensus 199 -~l~~fD~V~~aa 210 (286)
.++.+|+|+..+
T Consensus 79 ~~~~~~d~vi~~a 91 (251)
T PRK12826 79 EDFGRLDILVANA 91 (251)
T ss_pred HHhCCCCEEEECC
Confidence 223688877554
No 472
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.71 Score=41.92 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=60.4
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---------cCCC
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---------QLGE 202 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---------~l~~ 202 (286)
+.++.-|+|.+|. .+|++...|++|+.+|.+++.++...+.+...| .++.++..|+.+... ..+.
T Consensus 3 k~~lItGa~gIG~---~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 3 EVVVVIGAGGIGQ---AIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CEEEEECCChHHH---HHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 4566667653333 344444478999999999887665555444444 478888899876321 1246
Q ss_pred cceeehhhhccCChhHH-----------HHHHHHHHhhccCCcEEEE
Q 042119 203 YDCIFLAALVGMSKEEK-----------LTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k-----------~~vl~~l~~~l~pgg~lv~ 238 (286)
.|+++..+.+....++. ..+++.+.+.|+++|.++.
T Consensus 77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 89888666442221221 2235666777776665444
No 473
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=94.01 E-value=0.36 Score=45.33 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=61.3
Q ss_pred hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEE-----EEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119 125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFD-----NFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ 199 (286)
Q Consensus 125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~-----~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~ 199 (286)
.++.-.+.++++||-|.==..+++++. ...|..|+ +++.+++.+++|+++++..| ..+++. -|. ...
T Consensus 147 ~~g~l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g---~~i~~t-~d~---~eA 218 (310)
T COG0078 147 HFGSLKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG---GKITLT-EDP---EEA 218 (310)
T ss_pred hcCcccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC---CeEEEe-cCH---HHH
Confidence 445468899999999843333444444 35677765 67999999999999998877 466653 333 445
Q ss_pred CCCcceeehhhhccCChhH
Q 042119 200 LGEYDCIFLAALVGMSKEE 218 (286)
Q Consensus 200 l~~fD~V~~aalvg~~~~~ 218 (286)
..+.|+|+.+..+.|-.+.
T Consensus 219 v~gADvvyTDvWvSMGee~ 237 (310)
T COG0078 219 VKGADVVYTDVWVSMGEEA 237 (310)
T ss_pred hCCCCEEEecCcccCcchh
Confidence 5789999999988775444
No 474
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.00 E-value=0.094 Score=43.10 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI 206 (286)
Q Consensus 128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V 206 (286)
.-.+++|+.||+|..+-..+.-.. ..|++ |+.+.++.+ .|+++++..+. ..+++..- .++...+..+|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~--~~g~~~i~i~nRt~~---ra~~l~~~~~~--~~~~~~~~--~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALA--ALGAKEITIVNRTPE---RAEALAEEFGG--VNIEAIPL--EDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHH--HTTSSEEEEEESSHH---HHHHHHHHHTG--CSEEEEEG--GGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHH--HcCCCEEEEEECCHH---HHHHHHHHcCc--cccceeeH--HHHHHHHhhCCeE
Confidence 356899999999955544443333 24655 999999975 45566665542 45666543 3444445689999
Q ss_pred ehhhhccCC
Q 042119 207 FLAALVGMS 215 (286)
Q Consensus 207 ~~aalvg~~ 215 (286)
+.+.-++|+
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 988777765
No 475
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.96 E-value=1.2 Score=42.26 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------------------------------
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA------------------------------- 177 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~------------------------------- 177 (286)
..+-+||.=||| +|--+.-||. .|..+-|=+.|--|+=.+.=.+.
T Consensus 149 r~ki~iLvPGaG-lGRLa~dla~---~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~ 224 (369)
T KOG2798|consen 149 RTKIRILVPGAG-LGRLAYDLAC---LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS 224 (369)
T ss_pred ccCceEEecCCC-chhHHHHHHH---hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence 346799999999 5777788887 55555444555555443333321
Q ss_pred --------hcCCCCCCeEEEEccccchhhcC---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 178 --------SDAEFEGRMKFLTRDIMEVKEQL---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 178 --------~~g~l~~~i~f~~~D~~~~~~~l---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
..+ -.+.+..-.||-.++-..- +.||+|..+-++- ++.+-.+.++.|.+.|+|||+.+=-
T Consensus 225 ~PD~~p~~~~~-~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 225 IPDIHPASSNG-NTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred CccccccccCC-CCCCccccccceeEEecCcCCCCccceEEEEEEee-chHHHHHHHHHHHHhccCCcEEEec
Confidence 111 0112222224444332222 3699998887762 3467788999999999999998754
No 476
>PLN02928 oxidoreductase family protein
Probab=93.95 E-value=0.092 Score=50.21 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
-.+++|..||.|.+|......++ ..|.+|+++|.+...-....-.+.... . .......+...++..-+...|+|++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~--afG~~V~~~dr~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLR--PFGVKLLATRRSWTSEPEDGLLIPNGD-V-DDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHh--hCCCEEEEECCCCChhhhhhhcccccc-c-cccccccCcccCHHHHHhhCCEEEE
Confidence 45799999999999987666666 478999999987432111000000000 0 0000001122233444567899987
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+.-. +.+.+.-+=++....||||++||=-
T Consensus 233 ~lPl--t~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 233 CCTL--TKETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred CCCC--ChHhhcccCHHHHhcCCCCeEEEEC
Confidence 6432 3344433445778899999877653
No 477
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.91 E-value=0.45 Score=43.05 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119 128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC 205 (286)
Q Consensus 128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~ 205 (286)
..++.+||..|+ |++|..++.+|++ .|++|++++.+++..+.++ .+| . +.+-....+..+....+ .++|+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~-~~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKA--LGATVTATTRSPERAALLK----ELG-A-DEVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHH----hcC-C-cEEEecCccHHHHHHHhCCCceE
Confidence 467899999996 8999999999994 7899999999987755553 356 2 22211111111111112 36999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
|+-+. + . ..+....+.++++|+++.-.
T Consensus 212 vl~~~--~----~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 212 VLELV--G----T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEECC--C----h--HHHHHHHHHhccCCEEEEEc
Confidence 88432 2 2 35777889999999988654
No 478
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.90 E-value=0.41 Score=40.60 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119 129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF 207 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~ 207 (286)
-.+++|+.||+|..+..-+ .|.+ .|++|+.|+ |+..+ ++. .++ .+++...... ..++.++|+|+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VIs--p~~~~---~l~-~l~----~i~~~~~~~~--~~dl~~a~lVi 75 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD---TGAFVTVVS--PEICK---EMK-ELP----YITWKQKTFS--NDDIKDAHLIY 75 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEc--CccCH---HHH-hcc----CcEEEecccC--hhcCCCceEEE
Confidence 3579999999998776533 2333 789999995 44322 221 122 3555544432 34567899988
Q ss_pred hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccC
Q 042119 208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV 252 (286)
Q Consensus 208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v 252 (286)
.+.- + ......+....+ .++.+-+.+......|..|.+
T Consensus 76 aaT~---d-~e~N~~i~~~a~---~~~~vn~~d~~~~~~f~~pa~ 113 (157)
T PRK06719 76 AATN---Q-HAVNMMVKQAAH---DFQWVNVVSDGTESSFHTPGV 113 (157)
T ss_pred ECCC---C-HHHHHHHHHHHH---HCCcEEECCCCCcCcEEeeeE
Confidence 6521 1 223334344443 344333333223345777743
No 479
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.87 E-value=0.06 Score=50.68 Aligned_cols=107 Identities=23% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc--ch--------
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM--EV-------- 196 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~--~~-------- 196 (286)
+..+|.+++-+|-|-.|+.++..++ ..|+-|+..|.-+..-+.=+..-++...++ .-..++.. +.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~--~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~---~ee~~gGYAk~ms~~~~~~q 234 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAV--RLGAIVTARDLRMFKKEQVESLGAKFLAVE---DEESAGGYAKEMSEEFIAKQ 234 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHh--hcceEEehhhhhhHHhhhhhhccccccccc---ccccCCCccccCCHHHHHHH
Confidence 3478899999999999999999888 589999999998776443332222221111 11112211 11
Q ss_pred ----hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 197 ----KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 197 ----~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
.....++|+|+.-+++...+.+| -+-+++..-||||.+++--
T Consensus 235 ~~~~a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDl 280 (356)
T COG3288 235 AELVAEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDL 280 (356)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEe
Confidence 12345899999999995444566 4889999999999988753
No 480
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.87 E-value=0.38 Score=39.52 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
..+++|+++|+|.+|.+....... ..+..|+.+|.+++..+...+. .+. ..+.....|. .....++|+|+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~---~~~--~~~~~~~~~~---~~~~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAER---FGE--LGIAIAYLDL---EELLAEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHH---Hhh--cccceeecch---hhccccCCEEEe
Confidence 457899999999766654433321 1247899999998876543333 231 0012222333 222467999997
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA 241 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~ 241 (286)
+.-.+....+...+ . ...+++|..++--+.
T Consensus 88 ~~~~~~~~~~~~~~-~--~~~~~~~~~v~D~~~ 117 (155)
T cd01065 88 TTPVGMKPGDELPL-P--PSLLKPGGVVYDVVY 117 (155)
T ss_pred CcCCCCCCCCCCCC-C--HHHcCCCCEEEEcCc
Confidence 75433210000001 0 123577776665543
No 481
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.85 E-value=0.2 Score=46.82 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred CEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa 210 (286)
.+|.|||-|.+|.. ||++ ...|..|+.+|.+++.. .+.+...|. +.. .+ ......+.|+||.+-
T Consensus 1 ~kIafIGLG~MG~p---mA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga-----~~a-~s---~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSP---MAANLLKAGHEVTVYNRTPEKA---AELLAAAGA-----TVA-AS---PAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcCchhhHH---HHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC-----ccc-CC---HHHHHHhCCEEEEec
Confidence 48999999998865 4443 23689999999999883 233344562 111 11 112224789998653
Q ss_pred hccCChhHHHHHH---HHHHhhccCCcEEEEee
Q 042119 211 LVGMSKEEKLTIL---GHIRKYMKDGGILLVRS 240 (286)
Q Consensus 211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~r~ 240 (286)
. +.+.-..++ ..+...++||.++|-.+
T Consensus 66 ~---~~~~V~~V~~g~~g~~~~~~~G~i~IDmS 95 (286)
T COG2084 66 P---DDAAVRAVLFGENGLLEGLKPGAIVIDMS 95 (286)
T ss_pred C---CHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence 2 235555666 56888999999999865
No 482
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.84 E-value=0.41 Score=43.94 Aligned_cols=93 Identities=14% Similarity=0.255 Sum_probs=54.2
Q ss_pred CCEEEEeccCCChhhHHH-HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119 131 PKKVAFVGSGPMPLTSII-MAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL 208 (286)
Q Consensus 131 ~~~VL~IG~G~lp~tai~-lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~ 208 (286)
.++|.+||+|.+|.+-.. |.+. .....+|+.+|++++. .++++....| ++. ..|..+. ....|+||+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~~g-----~~~-~~~~~e~---~~~aDvVil 71 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQKYG-----VKG-THNKKEL---LTDANILFL 71 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHhcC-----ceE-eCCHHHH---HhcCCEEEE
Confidence 368999999998854332 2220 0123689999987632 2233333345 222 2333222 246799998
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLV 238 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~ 238 (286)
+.- ...-.++++.+...+++|.+++-
T Consensus 72 av~----p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 72 AMK----PKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred EeC----HHHHHHHHHHHHhhcCCCCEEEE
Confidence 743 24455678888888877765554
No 483
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=93.83 E-value=0.41 Score=44.37 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCCCCCEEEEeccCC-ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCC
Q 042119 127 GVVQPKKVAFVGSGP-MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~-lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~ 202 (286)
...++.+||..|+|+ +|..++.+|++ .|.+|+.++.+++..+.++ .+| ...-+.....|..+ +.. ...+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKA--MGLRVIAIDVGDEKLELAK----ELG-ADAFVDFKKSDDVEAVKELTGGGG 234 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH----HcC-CcEEEcCCCccHHHHHHHHhcCCC
Confidence 567889999999876 88999999995 7899999999987766553 355 21111221112111 111 1246
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+|+.+..- ...+....+.|+++|+++.-.
T Consensus 235 vd~vl~~~~~-------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 235 AHAVVVTAVS-------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCEEEEcCCc-------hHHHHHHHHHhhcCCEEEEec
Confidence 9999854321 135677888999999998764
No 484
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.82 E-value=0.27 Score=46.80 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.+++|.+||.|.+|.+...-.+ ..|.+|+..+.++... .+.+...| . + ..|..+ .....|+|+++
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~--~sG~~Vvv~~r~~~~s---~~~A~~~G-~----~--~~s~~e---aa~~ADVVvLa 80 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLR--DSGVDVVVGLREGSKS---WKKAEADG-F----E--VLTVAE---AAKWADVIMIL 80 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHH--HCCCEEEEEECCchhh---HHHHHHCC-C----e--eCCHHH---HHhcCCEEEEc
Confidence 4689999999998876544333 2677888877764432 22233456 2 1 224333 33568999976
Q ss_pred hhccCChhHHHHHH-HHHHhhccCCcEEEEe
Q 042119 210 ALVGMSKEEKLTIL-GHIRKYMKDGGILLVR 239 (286)
Q Consensus 210 alvg~~~~~k~~vl-~~l~~~l~pgg~lv~r 239 (286)
.- ...-..++ +++.+.|+||.+|++-
T Consensus 81 VP----d~~~~~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 81 LP----DEVQAEVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred CC----HHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 42 12335677 7899999999888444
No 485
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=93.81 E-value=0.28 Score=44.84 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCC
Q 042119 126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLG 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~ 201 (286)
..+.++.+||..|+ |.+|..++.+|++ .|++++.+.-+++..+..++ .| ...-+....-+..+ +.. .-.
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~ 207 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAA--RGINVINLVRRDAGVAELRA----LG-IGPVVSTEQPGWQDKVREAAGGA 207 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHh----cC-CCEEEcCCCchHHHHHHHHhCCC
Confidence 34578899999875 8899999999994 78999888777776544443 46 21111111111111 111 113
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++|+|+-+. | . ..+....+.++++|+++.-.
T Consensus 208 ~~d~v~d~~--g----~--~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 208 PISVALDSV--G----G--KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CCcEEEECC--C----C--hhHHHHHHhhcCCcEEEEEe
Confidence 699998542 2 1 24567788999999988754
No 486
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=93.79 E-value=0.22 Score=47.08 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhh--cCCCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKE--QLGEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~--~l~~fD 204 (286)
.++.+||..|+|++|..++.+|+. .|++ |++++.+++..+.+++ .| ...-+.....+.. ++.. .-..||
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~--~G~~~vi~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKA--FGASPIIAVDVRDEKLAKAKE----LG-ATHTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CceEecCCcccHHHHHHHHhCCCCCC
Confidence 678899999999999999999994 6777 9999999888776654 45 2111111111111 1111 123599
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+-+ ++ .. ..+....+.|+++|.++.-.
T Consensus 259 ~vld~--vg----~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEA--LG----KP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEe--CC----CH-HHHHHHHHHHhcCCEEEEEc
Confidence 99844 22 11 36677889999999988653
No 487
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=93.78 E-value=0.19 Score=46.50 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=60.1
Q ss_pred CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccchhhcC-C-
Q 042119 128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIMEVKEQL-G- 201 (286)
Q Consensus 128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~~~~~l-~- 201 (286)
..++++||..|+ |++|..++.+|++ .|++++.+..+++..+..++.+.++| ...-+..... +..+....+ .
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~i~~~~~~ 220 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVIQLAKL--LGIKTINVVRDRPDLEELKERLKALG-ADHVLTEEELRSLLATELLKSAPGG 220 (341)
T ss_pred cCCCCEEEEccchhHHHHHHHHHHHH--cCCeEEEEEcCCCcchhHHHHHHhcC-CCEEEeCcccccccHHHHHHHHcCC
Confidence 467899999986 8899999999995 68888777666532222333334466 2211111111 111111111 1
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
.+|+|+-+. | .. .+....+.++++|.++.-.
T Consensus 221 ~~d~vld~~--g----~~--~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 221 RPKLALNCV--G----GK--SATELARLLSPGGTMVTYG 251 (341)
T ss_pred CceEEEECc--C----cH--hHHHHHHHhCCCCEEEEEe
Confidence 589988542 2 11 3445778899999988754
No 488
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=93.77 E-value=0.26 Score=45.02 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccch-hh--cCCC
Q 042119 127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEV-KE--QLGE 202 (286)
Q Consensus 127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~-~~--~l~~ 202 (286)
...++.+|+..|+|++|..++.+|++ .|++|+.++.+++..+.+++ .| ...-+.... .+..+. .. .-..
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKA--AGARVIATSSSDEKLERAKA----LG-ADHVINYRTTPDWGEEVLKLTGGRG 229 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEcCCcccCHHHHHHHHcCCCC
Confidence 35778899999999999999999994 78999999999988877765 35 211111111 111111 11 1136
Q ss_pred cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+|+++-+. + . ..+....+.++++|.++.-.
T Consensus 230 ~d~~i~~~--~----~--~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 230 VDHVVEVG--G----P--GTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred CcEEEECC--C----h--HHHHHHHHhhcCCCEEEEEc
Confidence 99988542 2 1 35667889999999988654
No 489
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.76 E-value=0.55 Score=44.80 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=58.8
Q ss_pred CCCEEEEeccCCChhhHH-HHHhhcCCCc-EEEEEeCCh---------------------HHHHHHHHHHHhcCCCCCCe
Q 042119 130 QPKKVAFVGSGPMPLTSI-IMAKHHLTST-HFDNFDIDE---------------------AANDVARSIVASDAEFEGRM 186 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~-~V~~iDid~---------------------~ai~~Ar~~~~~~g~l~~~i 186 (286)
..++|+.||||.+|-... .||+ .|. +++-+|.|. .-++.|++.+++.. -.-+|
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~---aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i 98 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR---AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEI 98 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH---cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEE
Confidence 468999999997765433 3444 564 899999984 12344555566655 23456
Q ss_pred EEEEccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 187 KFLTRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 187 ~f~~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+..|+.. +...+++||+|+.+.- +.+.+ .++..+... .|-.++.-.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D---~~~~r-~~in~~~~~--~~ip~i~~~ 148 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATD---NFDTR-LLINDLSQK--YNIPWIYGG 148 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCC---CHHHH-HHHHHHHHH--cCCCEEEEE
Confidence 666666542 2223467999986642 22343 345555443 233444443
No 490
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.75 E-value=0.091 Score=43.26 Aligned_cols=95 Identities=8% Similarity=0.130 Sum_probs=54.0
Q ss_pred EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCC--eEEEEcccc-chhhcCCCcceeeh
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F-EGR--MKFLTRDIM-EVKEQLGEYDCIFL 208 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l-~~~--i~f~~~D~~-~~~~~l~~fD~V~~ 208 (286)
|+.+|+|.+|..-...-+ ..|.+|+.++..+ ..+. +++.|. + ... ..+...... ......+.||+||+
T Consensus 1 I~I~G~GaiG~~~a~~L~--~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA--QAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHH--HTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHH--HCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence 688999977654333222 2799999999998 4443 333341 0 001 111111111 11123357999998
Q ss_pred hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119 209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR 239 (286)
Q Consensus 209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r 239 (286)
+. .. .+-..+++.+.+.+.|++.+++-
T Consensus 74 ~v-Ka---~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 74 AV-KA---YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp -S-SG---GGHHHHHHHHCTGEETTEEEEEE
T ss_pred Ee-cc---cchHHHHHHHhhccCCCcEEEEE
Confidence 73 22 34456999999999999655543
No 491
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.73 E-value=0.2 Score=48.48 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=52.8
Q ss_pred CCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 131 PKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 131 ~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
..+|..||. |-+|-+-...-++ ..+.+|+|+|.+. .+ ..+......+.|+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~-~~~~~V~g~D~~d------------~~------------~~~~~~~v~~aDlVila 58 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRT-RMQLEVIGHDPAD------------PG------------SLDPATLLQRADVLIFS 58 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh-cCCCEEEEEcCCc------------cc------------cCCHHHHhcCCCEEEEe
Confidence 469999999 9888654333332 2488999999840 11 01112234578999998
Q ss_pred hhccCChhHHHHHHHHHHhh---ccCCcEEEE
Q 042119 210 ALVGMSKEEKLTILGHIRKY---MKDGGILLV 238 (286)
Q Consensus 210 alvg~~~~~k~~vl~~l~~~---l~pgg~lv~ 238 (286)
.-+ ..-.++++++.+. ++||.+|.=
T Consensus 59 vPv----~~~~~~l~~l~~~~~~l~~~~iVtD 86 (370)
T PRK08818 59 API----RHTAALIEEYVALAGGRAAGQLWLD 86 (370)
T ss_pred CCH----HHHHHHHHHHhhhhcCCCCCeEEEE
Confidence 755 5666788888876 788777654
No 492
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=93.71 E-value=0.21 Score=46.45 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=65.0
Q ss_pred CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcc
Q 042119 129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYD 204 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD 204 (286)
.++++|+..|+|++|..++.+|++ .|+ +|++++.+++..+.+++ +| ...-+.....+..+... .-.++|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----lg-~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKH--VGARHVVITDVNEYRLELARK----MG-ATRAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHHHhcCCCCCC
Confidence 578999999999999999999994 677 68888888887766554 45 21111111112211111 113689
Q ss_pred eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+||-+.. . ...+..+.+.++++|.++.-.
T Consensus 235 ~v~d~~g-----~--~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEMSG-----A--PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEECCC-----C--HHHHHHHHHHHhcCCEEEEEe
Confidence 9886432 1 236777888999999988865
No 493
>PLN02602 lactate dehydrogenase
Probab=93.69 E-value=0.73 Score=44.22 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=64.6
Q ss_pred CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a 209 (286)
.+|..||+|..|.+..+.........++.-+|++++ +-..+..+..... +...+++.. +|. .++.+.|+|++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~~~~~i~~~~dy----~~~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FLPRTKILASTDY----AVTAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cCCCCEEEeCCCH----HHhCCCCEEEEC
Confidence 799999999989887765542233457999999885 4466677666654 223355543 342 345789999887
Q ss_pred hhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119 210 ALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS 240 (286)
Q Consensus 210 alv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~ 240 (286)
+-+ ||+..+ -.+++..+.+.+ .|+|.+++-+
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 654 443322 123333333333 5788777754
No 494
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.67 E-value=0.55 Score=43.87 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=59.5
Q ss_pred EEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119 134 VAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 134 VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a 209 (286)
|..||+|..|.+....... .| .+++.+|++++ +...+..+-.....+ ...++.. +| ..++.+.|+|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~--~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~----~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA--KGLASELVLVDVNEEKAKGDALDLSHASAFL-ATGTIVRGGD----YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCccHHHHHHHhHHHhcccc-CCCeEEECCC----HHHhCCCCEEEEc
Confidence 4679999888877665442 34 67999999887 445555554444312 2344443 33 2356789999988
Q ss_pred hhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119 210 ALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS 240 (286)
Q Consensus 210 alv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~ 240 (286)
+-+ +|+..+ -..++.++.+.+ .|+|.+++-+
T Consensus 74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 754 333322 233344444333 3888887754
No 495
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.59 E-value=0.27 Score=48.68 Aligned_cols=103 Identities=11% Similarity=0.166 Sum_probs=64.1
Q ss_pred CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEE--eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119 129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNF--DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC 205 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~i--Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~ 205 (286)
-.+++||.||+|..+.- +..|.+ .|++|+.| +++++.-+++ .. .+++++..+.. ..++.++++
T Consensus 10 l~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp~~~~~~~~l~-----~~----~~i~~~~~~~~--~~dl~~~~l 75 (457)
T PRK10637 10 LRDRDCLLVGGGDVAERKARLLLD---AGARLTVNALAFIPQFTAWA-----DA----GMLTLVEGPFD--ESLLDTCWL 75 (457)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHHH-----hC----CCEEEEeCCCC--hHHhCCCEE
Confidence 35799999999976544 222333 68888887 5565543322 22 47899887763 456678999
Q ss_pred eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC-cceeeecccC
Q 042119 206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK-GARAFLYPVV 252 (286)
Q Consensus 206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~-g~r~~lyp~v 252 (286)
||.+. .++ ++=+++.+..+..|+++-...+ ....|..|.+
T Consensus 76 v~~at------~d~-~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~ 116 (457)
T PRK10637 76 AIAAT------DDD-AVNQRVSEAAEARRIFCNVVDAPKAASFIMPSI 116 (457)
T ss_pred EEECC------CCH-HHhHHHHHHHHHcCcEEEECCCcccCeEEEeeE
Confidence 88662 122 3445566666666777655432 3445888854
No 496
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.56 E-value=0.16 Score=50.52 Aligned_cols=77 Identities=27% Similarity=0.401 Sum_probs=54.0
Q ss_pred CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEE
Q 042119 129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDE-----------------AANDVARSIVASDAEFEGRMKFLT 190 (286)
Q Consensus 129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~g~l~~~i~f~~ 190 (286)
..+++|+.||+||-|++ +..|++ .|..||.+|..+ +.++...+.+++.| ..=.+....
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~---~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G-v~~~~~~~v 196 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSR---AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG-VEFKLNVRV 196 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHh---CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC-eEEEEcceE
Confidence 45589999999999999 677777 789999988643 67778888888887 322233333
Q ss_pred c-cccchhhcCCCcceeehhh
Q 042119 191 R-DIMEVKEQLGEYDCIFLAA 210 (286)
Q Consensus 191 ~-D~~~~~~~l~~fD~V~~aa 210 (286)
| |+. +.+-...||.||++.
T Consensus 197 G~~it-~~~L~~e~Dav~l~~ 216 (457)
T COG0493 197 GRDIT-LEELLKEYDAVFLAT 216 (457)
T ss_pred CCcCC-HHHHHHhhCEEEEec
Confidence 4 432 222235789998764
No 497
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.55 E-value=0.6 Score=40.15 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=58.1
Q ss_pred EEEEeccCCChhh-HHHHHhhcCCCc-EEEEEeCCh------------------HHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119 133 KVAFVGSGPMPLT-SIIMAKHHLTST-HFDNFDIDE------------------AANDVARSIVASDAEFEGRMKFLTRD 192 (286)
Q Consensus 133 ~VL~IG~G~lp~t-ai~lA~~~~~g~-~V~~iDid~------------------~ai~~Ar~~~~~~g~l~~~i~f~~~D 192 (286)
+|+.||||.+|-. +..|++ .|. +++-+|.|. ...+.+++.+++.. -.-+++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~---~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR---SGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH---cCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEee
Confidence 6899999977654 344455 555 599999986 23444555566654 23455555544
Q ss_pred ccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 193 IME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 193 ~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
+.+ ...-+++||+|+.+.- +.+.|..+.+.+.+. .+-.++.-.
T Consensus 77 ~~~~~~~~~l~~~DlVi~~~d---~~~~r~~i~~~~~~~--~~ip~i~~~ 121 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEAFD---NAETKAMLAESLLGN--KNKPVVCAS 121 (174)
T ss_pred cChhhHHHHhcCCCEEEECCC---CHHHHHHHHHHHHHH--CCCCEEEEe
Confidence 432 1223568999997621 235665566666655 244455444
No 498
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=93.49 E-value=0.32 Score=45.05 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCC
Q 042119 126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLG 201 (286)
Q Consensus 126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~ 201 (286)
....++.+|+..|+|.+|..++.+|++ .|.+ |++++.+++..+.+++ .| ...-+.....+..+ +.. .-.
T Consensus 161 ~~~~~g~~VlV~g~g~vg~~~~~la~~--~g~~~v~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~ 233 (343)
T cd08235 161 AGIKPGDTVLVIGAGPIGLLHAMLAKA--SGARKVIVSDLNEFRLEFAKK----LG-ADYTIDAAEEDLVEKVRELTDGR 233 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-CcEEecCCccCHHHHHHHHhCCc
Confidence 345788999999999999999999994 7888 9999999988776643 45 21111111111111 111 112
Q ss_pred CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119 202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240 (286)
Q Consensus 202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~ 240 (286)
++|+|+.+..- ...+....+.|+++|.++.-.
T Consensus 234 ~vd~vld~~~~-------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 234 GADVVIVATGS-------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CCCEEEECCCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence 58998854321 146777888999999998754
No 499
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.44 E-value=1.7 Score=40.61 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=64.4
Q ss_pred CCCEEEEeccCCChhhHH-HHHhhcCCC-cEEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEE
Q 042119 130 QPKKVAFVGSGPMPLTSI-IMAKHHLTS-THFDNFDIDE-------------------AANDVARSIVASDAEFEGRMKF 188 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g-~~V~~iDid~-------------------~ai~~Ar~~~~~~g~l~~~i~f 188 (286)
..++||.+|+|.+|.... .|+. .| .+++-+|-|. ...+.+.+.+++++ -.-+|+.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLal---aGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLIL---AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHH---cCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEE
Confidence 468999999997665422 2222 34 4688888663 34455666667766 2345666
Q ss_pred EEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecc
Q 042119 189 LTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYP 250 (286)
Q Consensus 189 ~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp 250 (286)
..++.. ...+.+||+|+.+.. +.+.+ ..+.++.+. .+-.++.-...|+....|.
T Consensus 94 ~~~~~~--~~~l~~fdvVV~~~~---~~~~~-~~in~~c~~--~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 94 STGPLT--TDELLKFQVVVLTDA---SLEDQ-LKINEFCHS--PGIKFISADTRGLFGSIFC 147 (286)
T ss_pred EeccCC--HHHHhcCCEEEEecC---CHHHH-HHHHHHHHH--cCCEEEEEeccccEEEEEe
Confidence 655532 234468999886532 22333 334444433 4556777777787776555
No 500
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.38 E-value=0.27 Score=48.81 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=47.3
Q ss_pred CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA 209 (286)
Q Consensus 130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a 209 (286)
.+++|+++|+|..|++...+.. ..|++|++.|.++... .++....| +++..+... ...+.++|+|+.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~--~~G~~V~~~D~~~~~~---~~~l~~~g-----i~~~~~~~~--~~~~~~~d~vV~S 81 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLS--ELGCDVVVADDNETAR---HKLIEVTG-----VADISTAEA--SDQLDSFSLVVTS 81 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHH--HCCCEEEEECCChHHH---HHHHHhcC-----cEEEeCCCc--hhHhcCCCEEEeC
Confidence 4678999999988887555554 3789999999875432 23334445 556555321 2234579999887
Q ss_pred hhc
Q 042119 210 ALV 212 (286)
Q Consensus 210 alv 212 (286)
..|
T Consensus 82 pgi 84 (473)
T PRK00141 82 PGW 84 (473)
T ss_pred CCC
Confidence 766
Done!