BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042124
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PDJ|D Chain D, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|E Chain E, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|F Chain F, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1WTH|D Chain D, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
pdb|2Z6B|D Chain D, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 391
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 111 SRGSRGTAMALRVKHKLENSQFAKPFL-----LITAMLGTCILIGDGVVTPCVSVISA-- 163
S+G A+ L H +EN +F +PF I MLG I ++TP ++ I+A
Sbjct: 99 SKGDNIIAIELGTIHSIENLKFGRPFFPDAGESIKEMLG-VIYQDRTLLTPAINAINAYV 157
Query: 164 ------------VRGIREATSAMTEERIVWISVAILGCLFMIQQFGTDKIGYIFAPIICV 211
+ +RE A+ ++ V++ I+G M ++ Y P+I
Sbjct: 158 PDIPWTSTFENYLSYVREVALAVGSDKFVFVWQDIMGVNMMDYDMMINQEPY---PMIVG 214
Query: 212 WFALIG 217
+LIG
Sbjct: 215 EPSLIG 220
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 486 GTLIEKLKEFVREGYFWSFQGIVNEGDVTEVDEESGHENVKLVPQEKQKE 535
G ++KL++F W F+ VN +T++ HENVK +P K E
Sbjct: 25 GNNVKKLQKFASTVKMWVFEETVNGRKLTDIINND-HENVKYLPGHKLPE 73
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 43/177 (24%)
Query: 127 LENSQFAKPFLLI----TAMLGTC---------ILIGDGVVTPCVSV---ISAVRGIREA 170
LEN Q+ KP +L A+ G I I + +V P + + ++ IR+A
Sbjct: 379 LENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKTHELKIIRKA 438
Query: 171 TSAMTEERIVWISVAILGCLFMIQQFGTDKIGYIFAPIICVWFALIGGIGIYNFFKFD-- 228
+ E V + Q+ T G + + + L+ GI KFD
Sbjct: 439 LYSFDSENYV-----------LEQKEATSFDG------VKIPYFLVYKKGI----KFDGK 477
Query: 229 -PTVIKAINPIYIIE--YFRRNKKEAWISLGGV-VLAITGSEALFGDVGHFTVRSIQ 281
PT+++A +I YF R K E W+ GV VLA FG H + + I+
Sbjct: 478 NPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIK 534
>pdb|4FE3|A Chain A, Structure Of Murine Cytosolic 5'-Nucleotidase Iii
Complexed With Uridinine Monophosphate
Length = 297
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 419 FRRKHFYELKHKVSPGRLKEIVADTKVCRIPGLAIFYSELVQGIPPIF 466
+ + H ++ + +LKEIVAD+ V G F+ +L Q P+F
Sbjct: 114 YTKSHGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVF 161
>pdb|2BDU|A Chain A, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2BDU|B Chain B, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2G06|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G06|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G08|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G08|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G09|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G09|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G0A|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2G0A|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2Q4T|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
pdb|2Q4T|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
Length = 297
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 419 FRRKHFYELKHKVSPGRLKEIVADTKVCRIPGLAIFYSELVQGIPPIF 466
+ + H ++ + +LKEIVAD+ V G F+ +L Q P+F
Sbjct: 114 YTKSHGLLIEQGIPKAKLKEIVADSDVXLKEGYENFFGKLQQHGIPVF 161
>pdb|2G07|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
pdb|2G07|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
Length = 297
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 419 FRRKHFYELKHKVSPGRLKEIVADTKVCRIPGLAIFYSELVQGIPPIF 466
+ + H ++ + +LKEIVAD+ V G F+ +L Q P+F
Sbjct: 114 YTKSHGLLIEQGIPKAKLKEIVADSDVXLKEGYENFFGKLQQHGIPVF 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,056,364
Number of Sequences: 62578
Number of extensions: 689502
Number of successful extensions: 1815
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1812
Number of HSP's gapped (non-prelim): 6
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)