Query 042124
Match_columns 598
No_of_seqs 229 out of 767
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 79.5 2.6 8.8E-05 43.7 6.4 104 153-268 98-207 (444)
2 4djk_A Probable glutamate/gamm 74.0 20 0.0007 37.6 11.6 86 179-269 130-221 (511)
3 3l1l_A Arginine/agmatine antip 65.7 42 0.0014 34.4 11.6 81 180-268 126-210 (445)
4 2bm3_A Type 2 cohesin, scaffol 27.5 17 0.00058 34.4 0.8 13 225-237 43-55 (166)
5 3kcp_B Cellulosome anchoring p 26.9 17 0.0006 34.7 0.8 13 226-238 56-68 (187)
6 2l6p_A PHAC1, PHAC2 and PHAD g 25.3 30 0.001 31.0 2.0 22 568-591 30-51 (124)
7 3luu_A Uncharacterized protein 22.6 29 0.001 29.5 1.3 22 567-588 34-55 (101)
8 2l6n_A Uncharacterized protein 19.7 44 0.0015 30.2 2.0 15 568-582 37-51 (132)
9 2rdd_B UPF0092 membrane protei 18.0 1.6E+02 0.0055 20.8 4.2 20 397-416 1-20 (37)
10 3bkd_A Transmembrane domain of 17.7 51 0.0017 21.9 1.3 14 66-79 9-22 (26)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=79.51 E-value=2.6 Score=43.70 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=54.3
Q ss_pred cccccccccccccccccccCCCCCc-eehhhHHHHHHHHHhhhhhcccchhhh---hhhHHHHHHHHHHhhhhhhccccC
Q 042124 153 VVTPCVSVISAVRGIREATSAMTEE-RIVWISVAILGCLFMIQQFGTDKIGYI---FAPIICVWFALIGGIGIYNFFKFD 228 (598)
Q Consensus 153 viTPAiSVlSAveGl~v~~p~~~~~-~vv~is~~ILv~LF~~Q~~GT~~vg~~---FgPIm~vWF~~i~~~Gi~ni~~~~ 228 (598)
+++.|....+..+=+.-..|...++ +...+++++++++..+..+|++..+++ +.++.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3444444444444333323332221 234567888888888999998776654 44544444444555555543 3
Q ss_pred cceeee-cChHHHHHHHhhcChhH-HHHhhhhhhhhccchhh
Q 042124 229 PTVIKA-INPIYIIEYFRRNKKEA-WISLGGVVLAITGSEAL 268 (598)
Q Consensus 229 p~Vl~A-lnP~y~~~f~~~~~~~g-~~~LG~V~L~iTGaEAL 268 (598)
|+-+.. ++| ++..+ +..+...+.+.+|-|+.
T Consensus 175 ~~~~~~~~~~---------~g~~~~~~~~~~~~~a~~G~e~~ 207 (444)
T 3gia_A 175 PSYVIPDLAP---------SAVSGMIFASAIFFLSYMGFGVI 207 (444)
T ss_dssp GGGTSCCCSH---------HHHHHHHHHHHHGGGGGTHHHHH
T ss_pred hhhcCCCCCC---------cchHHHHHHHHHHHHHHHhHHHH
Confidence 443221 222 22222 23344456788898876
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=74.00 E-value=20 Score=37.60 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=48.5
Q ss_pred ehhhHHHHHHHHHhhhhhcccchhhhhhhH----HHHHHHHHHhhhhhhccccCcceeeecChHHHHHHHhhc--ChhHH
Q 042124 179 IVWISVAILGCLFMIQQFGTDKIGYIFAPI----ICVWFALIGGIGIYNFFKFDPTVIKAINPIYIIEYFRRN--KKEAW 252 (598)
Q Consensus 179 vv~is~~ILv~LF~~Q~~GT~~vg~~FgPI----m~vWF~~i~~~Gi~ni~~~~p~Vl~AlnP~y~~~f~~~~--~~~g~ 252 (598)
...+++++++++..+.-+|....+++..-. +++-++.+.++|+..+...+|.-++ .|+ +.+..+ +..+|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MDS----KTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Ccc----cccCCCcccchHH
Confidence 556788888888899999998877654332 2223445556676655543332211 111 111111 23456
Q ss_pred HHhhhhhhhhccchhhh
Q 042124 253 ISLGGVVLAITGSEALF 269 (598)
Q Consensus 253 ~~LG~V~L~iTGaEALy 269 (598)
..+..++.+.+|-|+.-
T Consensus 205 ~~~~~~~~a~~G~e~~~ 221 (511)
T 4djk_A 205 VVFVAFILSYMGVEASA 221 (511)
T ss_dssp TTHHHHHHHHTTGGGGT
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 67788899999999863
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=65.70 E-value=42 Score=34.38 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHhhhhhcccchhhh---hhhHHHHHHHHHHhhhhhhccccCccee-eecChHHHHHHHhhcChhHHHHh
Q 042124 180 VWISVAILGCLFMIQQFGTDKIGYI---FAPIICVWFALIGGIGIYNFFKFDPTVI-KAINPIYIIEYFRRNKKEAWISL 255 (598)
Q Consensus 180 v~is~~ILv~LF~~Q~~GT~~vg~~---FgPIm~vWF~~i~~~Gi~ni~~~~p~Vl-~AlnP~y~~~f~~~~~~~g~~~L 255 (598)
..+++++++++..+--+|.+..+++ +.++.++=++.+.+.|+. ..+|+.+ ..++|.-.- ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccccCccCCc-----cHHHHHHHH
Confidence 4467777777788888888777765 444444333334444443 3345543 334442110 011223345
Q ss_pred hhhhhhhccchhh
Q 042124 256 GGVVLAITGSEAL 268 (598)
Q Consensus 256 G~V~L~iTGaEAL 268 (598)
..++.+.+|-|+.
T Consensus 198 ~~~~~af~G~e~~ 210 (445)
T 3l1l_A 198 NVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHTTTTTTHH
T ss_pred HHHHHHHHhHHHH
Confidence 5677788898875
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=27.46 E-value=17 Score=34.35 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=10.5
Q ss_pred cccCcceeeecCh
Q 042124 225 FKFDPTVIKAINP 237 (598)
Q Consensus 225 ~~~~p~Vl~AlnP 237 (598)
++|||+||+|+||
T Consensus 43 IKYDP~VLqaVn~ 55 (166)
T 2bm3_A 43 IVYDPKVLMAVDP 55 (166)
T ss_dssp EECCTTTEEEECT
T ss_pred EEECccceEeecC
Confidence 4588888888888
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=26.91 E-value=17 Score=34.73 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=8.1
Q ss_pred ccCcceeeecChH
Q 042124 226 KFDPTVIKAINPI 238 (598)
Q Consensus 226 ~~~p~Vl~AlnP~ 238 (598)
+|||+||+|+||.
T Consensus 56 KYDP~VLqaV~p~ 68 (187)
T 3kcp_B 56 VYDPKVLMAVDPE 68 (187)
T ss_dssp ECCTTTEEEECTT
T ss_pred eEChhHeeecccC
Confidence 4666666666664
No 6
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=25.31 E-value=30 Score=30.95 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=16.1
Q ss_pred HHHHhhhcCCCCcccccCCCCeee
Q 042124 568 YNFLKSNSRQSDQLFDIPREKMLK 591 (598)
Q Consensus 568 Y~FLRrN~R~~~~~L~IPh~rLlE 591 (598)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 6899999999876543 555543
No 7
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=22.58 E-value=29 Score=29.53 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=10.6
Q ss_pred HHHHHhhhcCCCCcccccCCCC
Q 042124 567 GYNFLKSNSRQSDQLFDIPREK 588 (598)
Q Consensus 567 ~Y~FLRrN~R~~~~~L~IPh~r 588 (598)
=|.|||.||+.+...-.-+.+|
T Consensus 34 ~~~wLRd~c~ca~c~~~~t~qr 55 (101)
T 3luu_A 34 TFEHLRVECPCAECKGHTPDQA 55 (101)
T ss_dssp EHHHHHHTCCCC----------
T ss_pred CHHHHHhhCCChhhcCccCCcc
Confidence 3789999999877654444443
No 8
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=19.72 E-value=44 Score=30.20 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=12.5
Q ss_pred HHHHhhhcCCCCccc
Q 042124 568 YNFLKSNSRQSDQLF 582 (598)
Q Consensus 568 Y~FLRrN~R~~~~~L 582 (598)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 799999999986553
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=18.02 E-value=1.6e+02 Score=20.78 Aligned_cols=20 Identities=10% Similarity=0.095 Sum_probs=10.7
Q ss_pred CccHHHHHHHHHHHHHHHHH
Q 042124 397 GGYLPLAFAVFLITVMYIWN 416 (598)
Q Consensus 397 GGW~pl~ia~~~~~iM~~W~ 416 (598)
|||..++.=++++.+||..-
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMI 20 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45555555455556665443
No 10
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=17.75 E-value=51 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHH
Q 042124 66 DDILGVFSLIIYTL 79 (598)
Q Consensus 66 ~~ilG~lSLIfWtL 79 (598)
.+|+|+|-||.|-+
T Consensus 9 a~iiGilHLiLwIl 22 (26)
T 3bkd_A 9 ASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Done!