Query 042124
Match_columns 598
No_of_seqs 229 out of 767
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 04:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042124.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042124hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 23.7 10 0.00075 33.5 0.8 14 225-238 39-52 (162)
2 d1tyja1 b.2.2.2 (A:2-171) Cell 18.8 12 0.00091 33.1 0.3 11 227-237 39-49 (170)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 17.6 41 0.003 20.7 2.4 20 398-417 5-24 (27)
4 d1zv9a1 b.2.2.2 (A:3-173) Cell 16.6 18 0.0013 32.1 0.8 11 227-237 41-51 (171)
5 d1nmpa_ c.135.1.1 (A:) Hypothe 9.7 97 0.0071 27.8 3.8 42 544-585 200-244 (247)
6 d1jb0i_ f.23.17.1 (I:) Subunit 6.1 25 0.0018 23.7 -1.8 19 323-341 12-30 (38)
7 d2a65a1 f.54.1.1 (A:5-513) Na( 5.0 2.9E+02 0.021 26.8 4.9 51 374-425 378-431 (509)
8 d1jlta_ a.133.1.2 (A:) Snake p 4.9 1.5E+02 0.011 24.4 2.1 23 253-275 3-27 (122)
9 d1px5a2 d.218.1.6 (A:1-200) 2' 4.5 1.9E+02 0.014 25.6 2.7 32 562-594 31-62 (200)
10 d2bnma1 a.35.1.3 (A:6-76) Hydr 4.0 1.6E+02 0.012 21.5 1.4 8 95-102 38-45 (71)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=23.74 E-value=10 Score=33.49 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=9.7
Q ss_pred cccCcceeeecChH
Q 042124 225 FKFDPTVIKAINPI 238 (598)
Q Consensus 225 ~~~~p~Vl~AlnP~ 238 (598)
++|||.||+|+||.
T Consensus 39 IKYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 39 IVYDPKVLMAVDPE 52 (162)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeCHHHhcccccC
Confidence 34677777777775
No 2
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=18.83 E-value=12 Score=33.11 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=5.5
Q ss_pred cCcceeeecCh
Q 042124 227 FDPTVIKAINP 237 (598)
Q Consensus 227 ~~p~Vl~AlnP 237 (598)
|||.||+|+||
T Consensus 39 YDP~vLQ~V~p 49 (170)
T d1tyja1 39 YNTTYLQPWDT 49 (170)
T ss_dssp CCTTTEEEEET
T ss_pred eChHHeecccC
Confidence 45555555544
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.58 E-value=41 Score=20.75 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 042124 398 GYLPLAFAVFLITVMYIWNN 417 (598)
Q Consensus 398 GW~pl~ia~~~~~iM~~W~~ 417 (598)
||+.++.-+.--+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888877777777888754
No 4
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=16.65 E-value=18 Score=32.07 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=4.5
Q ss_pred cCcceeeecCh
Q 042124 227 FDPTVIKAINP 237 (598)
Q Consensus 227 ~~p~Vl~AlnP 237 (598)
|||.||+|+||
T Consensus 41 YDP~vLQ~V~~ 51 (171)
T d1zv9a1 41 YDPAVLQPVTS 51 (171)
T ss_dssp CCTTTEEEECT
T ss_pred eChHHeeccCC
Confidence 34444444433
No 5
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}
Probab=9.75 E-value=97 Score=27.84 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.0
Q ss_pred HHHHHHcCc-EEEecchh--HHHHHHHHHHHhhhcCCCCcccccC
Q 042124 544 VDEASRAGV-VHLIGESE--RILIDYGYNFLKSNSRQSDQLFDIP 585 (598)
Q Consensus 544 L~~A~eaGV-vYiLG~s~--KlvIn~~Y~FLRrN~R~~~~~L~IP 585 (598)
...|++.|+ +..+||.. ++.++.+-.+|++++.-+..++.+|
T Consensus 200 ~~~A~~~gl~lI~~GH~~sE~~g~~~la~~L~~~~~i~v~~i~~~ 244 (247)
T d1nmpa_ 200 IHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIP 244 (247)
T ss_dssp HHHHHHTTCEEEECCHHHHTHHHHHHHHHHHHHHSSCEEEECCCC
T ss_pred HHHHHHcCCEEEEeCcHHHHHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 456788888 45567743 9999999999999986566766665
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.09 E-value=25 Score=23.70 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=13.5
Q ss_pred cccchhhHHHHHHHhhhee
Q 042124 323 QIYIPEVNYLLMLACMGVT 341 (598)
Q Consensus 323 QIYIP~vNw~Lmi~~i~vv 341 (598)
-|.||.+-|++-..++.+.
T Consensus 12 wI~iPvv~wl~p~vvMglL 30 (38)
T d1jb0i_ 12 WIFIPVVCWLMPTVVMGLL 30 (38)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3678888888877665543
No 7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=4.97 E-value=2.9e+02 Score=26.82 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccC---CccHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042124 374 TYVLTIGSVESVYSSSVLYKFNQ---GGYLPLAFAVFLITVMYIWNNVFRRKHFY 425 (598)
Q Consensus 374 ~~~~~f~~ie~~f~sa~l~K~~~---GGW~pl~ia~~~~~iM~~W~~G~~~~~~~ 425 (598)
...+.+...=+.+++.+.....| ++ +.+.+.+.+.++...|.||.++..+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 378 TAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred eeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 33344444444444444333322 33 56677788888999999999776543
No 8
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera ammodytes meridionalis), vipoxin inhibitor [TaxId: 8704]}
Probab=4.85 E-value=1.5e+02 Score=24.41 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=15.8
Q ss_pred HHhhhhhhhhccchhh--hccCCCc
Q 042124 253 ISLGGVVLAITGSEAL--FGDVGHF 275 (598)
Q Consensus 253 ~~LG~V~L~iTGaEAL--yADlGHF 275 (598)
+-||..+.|+||-.++ |+|-|.+
T Consensus 3 ~qf~~MI~c~tg~~~~~~Y~~YGCy 27 (122)
T d1jlta_ 3 FQFGDMILQKTGKEAVHSYAIYGCY 27 (122)
T ss_dssp HHHHHHHHHHHSSCGGGTGGGBTTT
T ss_pred HHHHHHHHHhhCCCchHHHcccCCC
Confidence 4567777888887774 7777643
No 9
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.50 E-value=1.9e+02 Score=25.63 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhcCCCCcccccCCCCeeeeee
Q 042124 562 ILIDYGYNFLKSNSRQSDQLFDIPREKMLKVRM 594 (598)
Q Consensus 562 lvIn~~Y~FLRrN~R~~~~~L~IPh~rLlEVGm 594 (598)
-+++.+..|||++|=+.... .+...++++.|-
T Consensus 31 ~avd~i~~fLke~cf~~~~~-~v~V~kVvKGGS 62 (200)
T d1px5a2 31 EAIDIVCRFLKERCFQGTAD-PVRVSKVVKGGS 62 (200)
T ss_dssp HHHHHHHHHHHHHTTCC----CCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcccCCC-CceEEEEEeccc
Confidence 46889999999998655432 244556666663
No 10
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=3.99 E-value=1.6e+02 Score=21.47 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=6.5
Q ss_pred cCCCCCcc
Q 042124 95 NDNGDEAA 102 (598)
Q Consensus 95 dn~GEGG~ 102 (598)
=.|||||.
T Consensus 38 wengegge 45 (71)
T d2bnma1 38 WENGEGGE 45 (71)
T ss_dssp HHTTTCTT
T ss_pred hhcCCCce
Confidence 36899997
Done!