BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042126
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
          Cys2his2 Zinc Finger Induces Structural Rearrangements
          Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
          From Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 29 PMTYSCGLCGKGYRSSKALAQHLN 52
          P +Y+C  C + +RS++AL  H+N
Sbjct: 4  PRSYTCSFCKREFRSAQALGGHMN 27


>pdb|1MIM|L Chain L, Igg Fab Fragment (Cd25-Binding)
 pdb|3IU3|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Basiliximab In Complex With Il-2ra (Cd25)
           Ectodomain
 pdb|3IU3|D Chain D, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Basiliximab In Complex With Il-2ra (Cd25)
           Ectodomain
 pdb|3IU3|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Basiliximab In Complex With Il-2ra (Cd25)
           Ectodomain
          Length = 210

 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 295 SREYLRYYRRKPRPSPANNVAITAALAS 322
           SR Y+++Y++KP  SP   +  T+ LAS
Sbjct: 28  SRSYMQWYQQKPGTSPKRWIYDTSKLAS 55


>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
           Holoenzyme
          Length = 416

 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 256 DGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYR-----------R 304
           DG+Q+I+  D+A++  +    E+ IT +    +  +  G+ E  R +R            
Sbjct: 297 DGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTN 356

Query: 305 KPRPSPANNVAITAALA 321
           KPR + A+ +     LA
Sbjct: 357 KPRAASAHAIGTVKCLA 373


>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
           Holoenzyme
 pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
           Holoenzyme
          Length = 416

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 256 DGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYR-----------R 304
           DG+Q+I+  D+A++  +    E+ IT +    +  +  G+ E  R +R            
Sbjct: 297 DGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTN 356

Query: 305 KPRPSPANNVAITAALA 321
           KPR + A+ +     LA
Sbjct: 357 KPRAASAHAIGTVKCLA 373


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.1 bits (61), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQGTSN 66
          YSC +CGK +  S  L QHL  R H      G S+
Sbjct: 13 YSCNVCGKAFVLSAHLNQHL--RVHTQETLSGPSS 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,547,036
Number of Sequences: 62578
Number of extensions: 286386
Number of successful extensions: 848
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 7
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)