Query 042128
Match_columns 211
No_of_seqs 143 out of 439
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 5.6E-46 1.2E-50 303.3 16.2 154 54-207 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 4.3E-39 9.4E-44 260.3 15.6 147 47-195 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.6 1.8E-06 3.9E-11 67.5 13.5 141 50-201 3-143 (144)
4 PF05702 Herpes_UL49_5: Herpes 29.6 1E+02 0.0022 23.7 4.1 50 158-207 35-84 (98)
5 KOG3088 Secretory carrier memb 27.4 1.2E+02 0.0027 27.6 4.9 62 133-208 203-264 (313)
6 COG3647 Predicted membrane pro 16.5 1.6E+02 0.0035 24.9 3.1 35 154-194 164-198 (205)
7 PF06376 DUF1070: Protein of u 16.3 1.7E+02 0.0037 18.1 2.5 20 136-158 13-32 (34)
8 PF14147 Spore_YhaL: Sporulati 16.0 1.7E+02 0.0036 19.9 2.6 21 95-115 2-22 (52)
9 PF07584 BatA: Aerotolerance r 15.7 1.5E+02 0.0033 20.8 2.5 25 45-69 51-75 (77)
10 PF11309 DUF3112: Protein of u 11.6 8.4E+02 0.018 19.9 8.9 73 41-126 1-77 (160)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=5.6e-46 Score=303.31 Aligned_cols=154 Identities=38% Similarity=0.653 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccceeeeeeecchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhh
Q 042128 54 FVLRLAAIGAALGATATMGTADEILPFFTQFFQFEAQYDDFEVFMFFVIANGLVSAYLVLSLPFSILCIVRPHAVGPRLL 133 (211)
Q Consensus 54 l~LRl~a~~~slaA~~vM~T~~qt~~~~~~~~~~~a~f~d~~af~ylv~an~I~~~Ysllql~~s~~~i~~~~~~~~~~l 133 (211)
++||+++++++++|+++|+||+|+.++++|.++++++|+|+++|+|+|++|+|+|+|+++|++++++++.+++...++|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 47999999999999999999999998877667889999999999999999999999999999999988877776666899
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccchhchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 042128 134 LLIGDTVMMALTIGAAAAAASVVYLAHSGNPNANWLPICQQFGDFCQSTSSAVVASLIAAALLLILIVLSAFAL 207 (211)
Q Consensus 134 ~f~~Dqv~ayLl~SaasAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~llsvlSa~~L 207 (211)
+|++||+++||++||++||++++|++|+||+|.+|+++|+++++||||+.+|++++|+|++++++++++|+++|
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=4.3e-39 Score=260.28 Aligned_cols=147 Identities=35% Similarity=0.585 Sum_probs=136.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccceeeeeeecchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042128 47 KGVAIFDFVLRLAAIGAALGATATMGTADEILPFFTQFFQFEAQYDDFEVFMFFVIANGLVSAYLVLSLPFSILCIVRPH 126 (211)
Q Consensus 47 r~l~~~~l~LRl~a~~~slaA~~vM~T~~qt~~~~~~~~~~~a~f~d~~af~ylv~an~I~~~Ysllql~~s~~~i~~~~ 126 (211)
|+.+..+++||+++++++++|+++|++|+|+.++.. .+.+++|+|+++|+|+|++|+|+|+|+++|++.+++.+.+++
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~--~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~ 78 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFS--IQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK 78 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeec--cccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 467899999999999999999999999999987763 678999999999999999999999999999999999887654
Q ss_pred --CCcchhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccchhchhhhhHHHHHHHHHHHHHH
Q 042128 127 --AVGPRLLLLIGDTVMMALTIGAAAAAASVVYLAHSGNPNANWLPICQQFGDFCQSTSSAVVASLIAAAL 195 (211)
Q Consensus 127 --~~~~~~l~f~~Dqv~ayLl~SaasAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~ 195 (211)
.....|++|++||+++||++||++||++++|++++||++.+|+++|+++++||+|+.+|++++|+|+++
T Consensus 79 ~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 79 LRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 223568999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.60 E-value=1.8e-06 Score=67.47 Aligned_cols=141 Identities=15% Similarity=0.034 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccccccceeeeeeecchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042128 50 AIFDFVLRLAAIGAALGATATMGTADEILPFFTQFFQFEAQYDDFEVFMFFVIANGLVSAYLVLSLPFSILCIVRPHAVG 129 (211)
Q Consensus 50 ~~~~l~LRl~a~~~slaA~~vM~T~~qt~~~~~~~~~~~a~f~d~~af~ylv~an~I~~~Ysllql~~s~~~i~~~~~~~ 129 (211)
+....+||+++++++++.+.+++....+.. .......++..|.+.+.++...|++..+...++.........
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS--------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIP 74 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc--------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345689999999999999999998664221 123455567889999999999998888877665411222334
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccchhchhhhhHHHHHHHHHHHHHHHHHHHH
Q 042128 130 PRLLLLIGDTVMMALTIGAAAAAASVVYLAHSGNPNANWLPICQQFGDFCQSTSSAVVASLIAAALLLILIV 201 (211)
Q Consensus 130 ~~~l~f~~Dqv~ayLl~SaasAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~llsv 201 (211)
+.+..++.|.+++.+-+.+...-+.-..-.+.+++ +...+...++-|+...++.+++|++++++..+.+
T Consensus 75 ~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 75 WPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 55688999999999988876644332211111111 2333445567899999999999999999987765
No 4
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=29.56 E-value=1e+02 Score=23.66 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=35.8
Q ss_pred HHhhCCCCCCcccccchhchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 042128 158 LAHSGNPNANWLPICQQFGDFCQSTSSAVVASLIAAALLLILIVLSAFAL 207 (211)
Q Consensus 158 l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~llsvlSa~~L 207 (211)
..+.++.+.-|.+-|+.-|-.-+.-.++.++=+++.+.-.+..+.-+|+.
T Consensus 35 ~~~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~a 84 (98)
T PF05702_consen 35 IAREESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRA 84 (98)
T ss_pred hhHhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555679999998887788888888777777766666666666654
No 5
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.38 E-value=1.2e+02 Score=27.65 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=38.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccchhchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 042128 133 LLLIGDTVMMALTIGAAAAAASVVYLAHSGNPNANWLPICQQFGDFCQSTSSAVVASLIAAALLLILIVLSAFALR 208 (211)
Q Consensus 133 l~f~~Dqv~ayLl~SaasAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~llsvlSa~~L~ 208 (211)
++++++|....++- |.+ -+|....+|.+.=+.++ ...+.-++-++.++++-+.+++|.+-|.
T Consensus 203 FF~y~~q~~~~v~q-----Avg-----f~g~~~~G~i~ai~~~~----~~i~v~i~m~i~a~~Ft~~av~~i~~i~ 264 (313)
T KOG3088|consen 203 FFTYFFQIVFCVFQ-----AVG-----FPGWGLCGWIPAIDVLS----GNIAVGILMLIGAGLFTLEAVLSIWVLQ 264 (313)
T ss_pred HHHHHHHHHHHHHH-----HHc-----cCCcchhhhhhHhhccC----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888877762 222 35555566765433333 4444455667778888888888876553
No 6
>COG3647 Predicted membrane protein [Function unknown]
Probab=16.47 E-value=1.6e+02 Score=24.93 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCCCCcccccchhchhhhhHHHHHHHHHHHHH
Q 042128 154 SVVYLAHSGNPNANWLPICQQFGDFCQSTSSAVVASLIAAA 194 (211)
Q Consensus 154 ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~ 194 (211)
+++.++..|+ ||+. |-|-+|+..++=.++.+++.+
T Consensus 164 giaFLGsQGD---qWDa---QkDmlcdtlGAltal~lla~~ 198 (205)
T COG3647 164 GIAFLGSQGD---QWDA---QKDMLCDTLGALTALILLARF 198 (205)
T ss_pred hHHHhhcccc---hhhh---HHhHHHHHHHHHHHHHHHHHH
Confidence 4556655554 7875 447899998887777776653
No 7
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=16.32 E-value=1.7e+02 Score=18.14 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 042128 136 IGDTVMMALTIGAAAAAASVVYL 158 (211)
Q Consensus 136 ~~Dqv~ayLl~SaasAA~ai~~l 158 (211)
..||.++|+|+-++- -++|+
T Consensus 13 aiDqgiay~Lm~~Al---~~tyl 32 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL---VVTYL 32 (34)
T ss_pred hhhHHHHHHHHHHHH---HHHhh
Confidence 579999999987543 44554
No 8
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=15.97 E-value=1.7e+02 Score=19.92 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 042128 95 EVFMFFVIANGLVSAYLVLSL 115 (211)
Q Consensus 95 ~af~ylv~an~I~~~Ysllql 115 (211)
|=.+||+++..+.++|-++-.
T Consensus 2 PwWvY~vi~gI~~S~ym~v~t 22 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVKT 22 (52)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 346899999999999987754
No 9
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=15.68 E-value=1.5e+02 Score=20.78 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 042128 45 WKKGVAIFDFVLRLAAIGAALGATA 69 (211)
Q Consensus 45 ~~r~l~~~~l~LRl~a~~~slaA~~ 69 (211)
++|..+..-++||++++++.+++++
T Consensus 51 ~~~~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 51 WRRLRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHc
Confidence 6667788899999999999888763
No 10
>PF11309 DUF3112: Protein of unknown function (DUF3112); InterPro: IPR021460 This eukaryotic family of proteins has no known function.
Probab=11.62 E-value=8.4e+02 Score=19.93 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=37.2
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHHH---HhccccccccccceeeeeeecchhhHHH-HHHHHHHHHHHHHHHHH
Q 042128 41 PRGGWKKGVAIFDFVLRLAAIGAALGATATM---GTADEILPFFTQFFQFEAQYDDFEVFMF-FVIANGLVSAYLVLSLP 116 (211)
Q Consensus 41 ~~~g~~r~l~~~~l~LRl~a~~~slaA~~vM---~T~~qt~~~~~~~~~~~a~f~d~~af~y-lv~an~I~~~Ysllql~ 116 (211)
|.+||+|.....-..+= .++.+..+| .+.-|. +++ .+.+....++- ..++......|+++.++
T Consensus 1 P~~Gw~~~~~~~~~~ly-----~~v~~~lvm~vI~s~V~~--~yt------l~~~~~~~~r~v~~~~~~~~~v~a~~pi~ 67 (160)
T PF11309_consen 1 PVGGWRPLFWIFMRFLY-----ISVVAVLVMTVITSTVPS--FYT------LDPHTRRIDRDVQLFASTYLAVYAFLPIP 67 (160)
T ss_pred CCCCCchHHHHHHHHHH-----HHHHHHHHHHHHHHHhHH--hhc------CCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 57899987666554432 333344444 222221 121 22222223322 34566677888888877
Q ss_pred HHHHHhhcCC
Q 042128 117 FSILCIVRPH 126 (211)
Q Consensus 117 ~s~~~i~~~~ 126 (211)
+-......|+
T Consensus 68 lv~la~~~P~ 77 (160)
T PF11309_consen 68 LVALAFFLPR 77 (160)
T ss_pred HHHHHHhcCC
Confidence 7655554444
Done!