Query 042128
Match_columns 211
No_of_seqs 143 out of 439
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 9.2 2.7E+02 0.0091 18.2 3.0 28 91-118 26-53 (59)
2 2lg4_A Aurelin; antimicrobial 10.9 82 0.0028 19.3 0.0 14 169-182 9-22 (40)
3 2nwl_A GLTPH, glutamate sympor 7.8 1.1E+03 0.037 20.8 8.8 62 95-159 226-288 (422)
4 2jwa_A Receptor tyrosine-prote 7.6 4.1E+02 0.014 16.4 3.2 25 186-210 14-38 (44)
5 1iij_A ERBB-2 receptor protein 6.2 3.1E+02 0.011 16.2 2.0 26 185-210 9-34 (35)
6 2y69_J Cytochrome C oxidase po 6.0 4.4E+02 0.015 18.3 3.0 28 90-117 46-73 (80)
7 2kt5_B ICP27; chaperone, mRNA 5.9 5.1E+02 0.018 15.6 2.8 19 10-28 15-33 (40)
8 1jb0_X Photosystem I subunit P 4.6 5.4E+02 0.018 15.1 2.2 14 99-112 18-31 (35)
9 2e2s_A Agelenin; cystine knot, 4.3 1.7E+02 0.0058 17.3 -0.1 10 172-181 3-12 (36)
10 3dxe_B Amyloid beta A4 protein 4.1 3.4E+02 0.012 16.0 1.1 10 90-100 21-30 (35)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=9.22 E-value=2.7e+02 Score=18.20 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=22.4
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHH
Q 042128 91 YDDFEVFMFFVIANGLVSAYLVLSLPFS 118 (211)
Q Consensus 91 f~d~~af~ylv~an~I~~~Ysllql~~s 118 (211)
=+|.--|++..+..+++.+|++-.+...
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666788899999999999998877653
No 2
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=10.90 E-value=82 Score=19.32 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=11.5
Q ss_pred ccccchhchhhhhH
Q 042128 169 LPICQQFGDFCQST 182 (211)
Q Consensus 169 ~~vC~~~~~FC~~~ 182 (211)
..+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 35699999999876
No 3
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=7.81 E-value=1.1e+03 Score=20.84 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=37.6
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042128 95 EVF-MFFVIANGLVSAYLVLSLPFSILCIVRPHAVGPRLLLLIGDTVMMALTIGAAAAAASVVYLA 159 (211)
Q Consensus 95 ~af-~ylv~an~I~~~Ysllql~~s~~~i~~~~~~~~~~l~f~~Dqv~ayLl~SaasAA~ai~~l~ 159 (211)
..| +|++..-.....|.++..+.-.. ..| . ...+++--..+-.+..+-.++++|...+....
T Consensus 226 ~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~-~-np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~ 288 (422)
T 2nwl_A 226 GELAKVTAAVYVGLTLQILLVYFVLLK-IYG-I-DPISFIKHAKDAMLTAFVTRSSSGTLPVTMRV 288 (422)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHHHHH-HTT-C-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-C-CHHHHHHHHHHHHHHHHHhccHHhHHHHHHHH
Confidence 344 45555555556667776665443 332 2 12245556788888888888888888877543
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.59 E-value=4.1e+02 Score=16.40 Aligned_cols=25 Identities=20% Similarity=0.529 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcC
Q 042128 186 VVASLIAAALLLILIVLSAFALRRR 210 (211)
Q Consensus 186 i~lsflA~~~~~llsvlSa~~L~r~ 210 (211)
++...++.+++.++.+.-+..+.||
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 3444444334444444444444443
No 5
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.20 E-value=3.1e+02 Score=16.19 Aligned_cols=26 Identities=31% Similarity=0.674 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcC
Q 042128 185 AVVASLIAAALLLILIVLSAFALRRR 210 (211)
Q Consensus 185 Si~lsflA~~~~~llsvlSa~~L~r~ 210 (211)
+++.+.++.+++.++.+.-+..+.||
T Consensus 9 sIaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 9 FIIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred EeHHHHHHHHHHHHHHHHhheEEeec
Confidence 45556666444444444444444444
No 6
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.96 E-value=4.4e+02 Score=18.28 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=22.3
Q ss_pred eecchhhHHHHHHHHHHHHHHHHHHHHH
Q 042128 90 QYDDFEVFMFFVIANGLVSAYLVLSLPF 117 (211)
Q Consensus 90 ~f~d~~af~ylv~an~I~~~Ysllql~~ 117 (211)
.-+|.--|.+.++..+++.+|++-.+..
T Consensus 46 grsd~~Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 46 GATDNILYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888999999999998887765
No 7
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=5.89 E-value=5.1e+02 Score=15.60 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=12.5
Q ss_pred cccccccCCCCCccccCCC
Q 042128 10 PESKKANGSGKGKAAVGAP 28 (211)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (211)
+.++.+..+||.--++||+
T Consensus 15 ~~s~~E~~~GkvAR~qpp~ 33 (40)
T 2kt5_B 15 PSCSPERHGGKVARLQPPP 33 (40)
T ss_dssp CCCCCCCCCCCSCCCCCCC
T ss_pred cCCCcCCCCCceeeecCCC
Confidence 3445566667777788776
No 8
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=4.61 E-value=5.4e+02 Score=15.11 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 042128 99 FFVIANGLVSAYLV 112 (211)
Q Consensus 99 ylv~an~I~~~Ysl 112 (211)
.++++|-++++|=+
T Consensus 18 llLaINflVAayYF 31 (35)
T 1jb0_X 18 LLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68889999988853
No 9
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=4.30 E-value=1.7e+02 Score=17.35 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=6.9
Q ss_pred cchhchhhhh
Q 042128 172 CQQFGDFCQS 181 (211)
Q Consensus 172 C~~~~~FC~~ 181 (211)
|-..++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 6667788864
No 10
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=4.15 E-value=3.4e+02 Score=16.01 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=7.5
Q ss_pred eecchhhHHHH
Q 042128 90 QYDDFEVFMFF 100 (211)
Q Consensus 90 ~f~d~~af~yl 100 (211)
.|.+ |+|+||
T Consensus 21 GYEN-PTYkyf 30 (35)
T 3dxe_B 21 GYEN-PTYKFF 30 (35)
T ss_dssp CEEC-HHHHHH
T ss_pred cCcC-cHHHHH
Confidence 4666 888887
Done!