Query 042128
Match_columns 211
No_of_seqs 143 out of 439
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 04:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 5.0 2E+02 0.015 14.6 1.9 14 99-112 12-25 (29)
2 d2zjra2 b.40.4.5 (A:33-127) N- 3.3 1.6E+02 0.012 19.4 0.8 18 38-55 19-36 (95)
3 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.1 6.6E+02 0.048 18.1 4.5 34 177-210 74-107 (290)
4 d2j01d2 b.40.4.5 (D:2-126) N-t 2.9 1.6E+02 0.012 20.5 0.4 17 38-54 50-66 (125)
5 d1oede_ f.36.1.1 (E:) Acetylch 2.8 5.1E+02 0.037 18.4 3.5 15 166-180 220-234 (260)
6 d1ppje2 f.23.12.1 (E:1-69) Iro 2.8 5.4E+02 0.04 15.6 3.0 21 138-160 32-52 (69)
7 d1rrza_ a.7.10.1 (A:) Glycogen 2.5 2.3E+02 0.017 17.3 0.7 15 171-185 45-59 (66)
8 d2adra2 g.37.1.1 (A:131-161) A 2.3 2.6E+02 0.019 14.7 0.6 13 46-58 8-20 (31)
9 d3d31c1 f.58.1.1 (C:13-260) Su 2.2 9.8E+02 0.071 16.3 4.8 34 177-210 44-77 (248)
10 d2pn2a1 d.227.1.1 (A:1-132) Un 2.2 8.1E+02 0.059 15.2 4.5 35 43-79 34-68 (132)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.96 E-value=2e+02 Score=14.64 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q 042128 99 FFVIANGLVSAYLV 112 (211)
Q Consensus 99 ylv~an~I~~~Ysl 112 (211)
.++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46778888888865
No 2
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.31 E-value=1.6e+02 Score=19.43 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=14.0
Q ss_pred CCCCCCCcccchhHHHHH
Q 042128 38 TPHPRGGWKKGVAIFDFV 55 (211)
Q Consensus 38 ~~~~~~g~~r~l~~~~l~ 55 (211)
.-+.+||.+|.++.+|+-
T Consensus 19 ~rhrGGGhKr~yR~IDf~ 36 (95)
T d2zjra2 19 SRFIGGGHKRLYRIIDFK 36 (95)
T ss_dssp SCSCCCCCCCBCCCBCCS
T ss_pred EEEECCcccEEEEEeeeh
Confidence 456788899998888763
No 3
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=6.6e+02 Score=18.07 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=28.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 042128 177 DFCQSTSSAVVASLIAAALLLILIVLSAFALRRR 210 (211)
Q Consensus 177 ~FC~~~~~Si~lsflA~~~~~llsvlSa~~L~r~ 210 (211)
.|.+-..-|+.+++++.+.-.++.++.+|.+.|.
T Consensus 74 ~~~~~~~nSl~~a~~~~~~~~~ig~~~a~~l~r~ 107 (290)
T d2r6gg1 74 PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARM 107 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHhhhhhhhhhhhHHHHHHHHHHHh
Confidence 4566666789999999999999999999998764
No 4
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=2.93 E-value=1.6e+02 Score=20.49 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.7
Q ss_pred CCCCCCCcccchhHHHH
Q 042128 38 TPHPRGGWKKGVAIFDF 54 (211)
Q Consensus 38 ~~~~~~g~~r~l~~~~l 54 (211)
.-|.+||.+|.++.+|+
T Consensus 50 ~RhrGGGhKr~yR~IDf 66 (125)
T d2j01d2 50 VRFRGGGHKRLYRIIDF 66 (125)
T ss_dssp STTBCCCCCCCBCCCCC
T ss_pred EeeecCCceEEEEEEEE
Confidence 34568899999998887
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.82 E-value=5.1e+02 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=7.2
Q ss_pred CCcccccchhchhhh
Q 042128 166 ANWLPICQQFGDFCQ 180 (211)
Q Consensus 166 ~~W~~vC~~~~~FC~ 180 (211)
..|..+-...|++|-
T Consensus 220 ~eW~~vA~viDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKVIDKACF 234 (260)
T ss_dssp ------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 358888888888884
No 6
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.76 E-value=5.4e+02 Score=15.60 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042128 138 DTVMMALTIGAAAAAASVVYLAH 160 (211)
Q Consensus 138 Dqv~ayLl~SaasAA~ai~~l~~ 160 (211)
.+.+.||+..+++.+. +|-+|
T Consensus 32 Rk~fsYl~~g~~~v~~--ay~AK 52 (69)
T d1ppje2 32 RKGFSYLVTATTTVGV--AYAAK 52 (69)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHH
T ss_pred hceehhhhhhhHHHHH--HHHHH
Confidence 4688998877766443 34444
No 7
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=2.46 E-value=2.3e+02 Score=17.33 Aligned_cols=15 Identities=27% Similarity=0.762 Sum_probs=11.5
Q ss_pred ccchhchhhhhHHHH
Q 042128 171 ICQQFGDFCQSTSSA 185 (211)
Q Consensus 171 vC~~~~~FC~~~~~S 185 (211)
+|..|.-+|.++.-+
T Consensus 45 Fc~Ry~~Yc~q~~qa 59 (66)
T d1rrza_ 45 FCARYAWYCQQMMQA 59 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 488888899887643
No 8
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=2.31 E-value=2.6e+02 Score=14.71 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=8.5
Q ss_pred ccchhHHHHHHHH
Q 042128 46 KKGVAIFDFVLRL 58 (211)
Q Consensus 46 ~r~l~~~~l~LRl 58 (211)
.|.+..=||+||=
T Consensus 8 ~R~FaRrDLlLRH 20 (31)
T d2adra2 8 NRAFTRRDLLIRH 20 (31)
T ss_dssp CCEESSHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 4556666888874
No 9
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=2.21 E-value=9.8e+02 Score=16.34 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 042128 177 DFCQSTSSAVVASLIAAALLLILIVLSAFALRRR 210 (211)
Q Consensus 177 ~FC~~~~~Si~lsflA~~~~~llsvlSa~~L~r~ 210 (211)
++-+-..-++..++++.++-.++.++-++.+.|+
T Consensus 44 ~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~ 77 (248)
T d3d31c1 44 SVISSIFLSLYAGFLATLLALLLGAPTGYILARF 77 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666788888888888888888888877653
No 10
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=2.16 E-value=8.1e+02 Score=15.24 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=23.1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 042128 43 GGWKKGVAIFDFVLRLAAIGAALGATATMGTADEILP 79 (211)
Q Consensus 43 ~g~~r~l~~~~l~LRl~a~~~slaA~~vM~T~~qt~~ 79 (211)
||-..+..-.++++ .+++.|+...+.+...+...+
T Consensus 34 gG~~~g~~P~eLll--aala~C~~~~~~~~a~~~gi~ 68 (132)
T d2pn2a1 34 QGKGEAFSPTDLLA--TSLASCMLTIIGIKARDMEID 68 (132)
T ss_dssp TCCCSSCCHHHHHH--HHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHcCCC
Confidence 44455666777775 667777777777777666543
Done!