BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042131
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 76 CGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEV- 134
C V+T EIEHVD +E++ + V +P IR IQ+K+ QK H +GIP+ E E+
Sbjct: 87 CDVVTAEIEHVDTYALEEVASE-VKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELV 145
Query: 135 -NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKW 193
N + G+Q GYPLM+KSK++AYDGRGN S++++ A+ AL DR LY EKW
Sbjct: 146 ENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK--DRPLYAEKW 203
Query: 194 APF 196
A F
Sbjct: 204 AYF 206
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 76 CGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEV- 134
C V+T EIEHVD +E++ + V +P IR IQ+K+ QK H +GIP+ E E+
Sbjct: 87 CDVVTAEIEHVDTYALEEVASE-VKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELV 145
Query: 135 -NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKW 193
N + G+Q GYPLM+KSK++AYDGRGN S++++ A+ AL DR LY EKW
Sbjct: 146 ENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK--DRPLYAEKW 203
Query: 194 APF 196
A F
Sbjct: 204 AYF 206
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
Length = 380
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 73 VVACGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM 132
V V T ++EH+DV ++KL +G P T+ IIQDK++QK +GIP+PE+
Sbjct: 60 VKGSDVTTYDLEHIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYK 119
Query: 133 EVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEK 192
V DLES R +FG+P++ K++ YDGRG + K+E++L +AI + + IEK
Sbjct: 120 LVKDLESDVR---EFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKGETYLEEFVEIEK 176
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 75 ACGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEV 134
++T E E+V V +LE + + P A + + QD+ +K F G+P P F V
Sbjct: 59 GLALVTYEFENVPVEAARRLEGR-LPLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPV 117
Query: 135 NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWA 194
+ E K+ G P ++K++ YDG+G A+ ++EEE A+ ALGG R L +E +
Sbjct: 118 DGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGG--RGLILEGFV 175
Query: 195 PF 196
PF
Sbjct: 176 PF 177
>pdb|2Z04|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Atpase Subunit From Aquifex Aeolicus
pdb|2Z04|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Atpase Subunit From Aquifex Aeolicus
Length = 365
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 73 VVACGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM 132
V +C ++T E EH+ ++EK E + + P + + + + +K+ HG P+PEF+
Sbjct: 55 VDSCDIITYEFEHIKDEVLEKCESKLI---PNPQALYVKKSRIREKLFLKKHGFPVPEFL 111
Query: 133 EVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEK 192
+ E A K F P+++K++ L YDG+G K E+ + + + S IE+
Sbjct: 112 VIKRDEIID-ALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK-EESFIIEE 169
Query: 193 WAPF 196
+ F
Sbjct: 170 FVKF 173
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 78 VLTVEIEHVDVAIMEKLEQQGVDCQPKASTI-RIIQDKYIQKVHFSPHGIPLPEFMEVND 136
V+T E E++D ++ LE+ P+ S + Q+++ +K G+P+ + V +
Sbjct: 78 VVTYEFENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQN 135
Query: 137 LESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF 196
E A + YP ++K+ + YDG+G V +SE ++ A + +EKW PF
Sbjct: 136 QEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKWVPF 193
Query: 197 VK 198
K
Sbjct: 194 EK 195
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 78 VLTVEIEHVDVAIMEKLEQQGVDCQPKASTI-RIIQDKYIQKVHFSPHGIPLPEFMEVND 136
V+T E E++D ++ LE+ P+ S + Q+++ +K G+P+ + V +
Sbjct: 72 VVTYEFENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQN 129
Query: 137 LESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF 196
E A + YP ++K+ + YDG+G V +SE ++ A + +EKW PF
Sbjct: 130 QEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKWVPF 187
Query: 197 VK 198
K
Sbjct: 188 EK 189
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 78 VLTVEIEHVDVAIMEKLEQQGVDCQPKASTI-RIIQDKYIQKVHFSPHGIPLPEFMEVND 136
V+T E E++D ++ LE+ P+ S + Q+++ +K G+P+ + V +
Sbjct: 78 VVTYEFENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQN 135
Query: 137 LESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF 196
E A + YP ++K+ + YDG+G V +SE ++ A + +EKW PF
Sbjct: 136 QEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKWVPF 193
Query: 197 VK 198
K
Sbjct: 194 EK 195
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 76 CGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN 135
C V+T E E++ + KL + + I+++QD+ +K G + F+ V
Sbjct: 74 CDVITYEFENISAQQL-KLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVK 132
Query: 136 DLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI 178
+ +A + GYP +VK++ YDG+G + +E++L
Sbjct: 133 ESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGF 175
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 103 PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDG 162
P + ++ K K + H IP E+ D+E+A +Q G P+++K+ LA G
Sbjct: 97 PTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAA-G 155
Query: 163 RGNAVAKSEEELSSAIT 179
+G VA ++EE +A+
Sbjct: 156 KGVIVAXTQEEAETAVN 172
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 76 CGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN 135
C ++ E E+V A ++ L Q P + I QD+ +K + G+P+ + +
Sbjct: 97 CDAVSTEFENVPAASLDFLAQSTF-VAPAGRCVAIAQDRIAEKRFIAASGVPVAPHVVIE 155
Query: 136 DLESARRAGKQFG---YPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG 183
P ++K+ L YDG+G + +E A +LGG
Sbjct: 156 SAAQLAALADADLAAVLPGILKTARLGYDGKGQVRVATAQEARDAYGSLGG 206
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 103 PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEV--NDLESARRAGKQFGYPLMVKSKSLAY 160
PKA T+R + +K + G+P+ E +D+ + GYP+M+K+ S
Sbjct: 124 PKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKA-SWGG 182
Query: 161 DGRGNAVAKSEEELSSAIT-----ALGGFDRS-LYIEK 192
GRG V +SE +L+ +T A+ F + +Y+EK
Sbjct: 183 GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEK 220
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 103 PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEV--NDLESARRAGKQFGYPLMVKSKSLAY 160
PKA T+R + +K + G+P+ E +D+ + GYP+M+K+ S
Sbjct: 124 PKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKA-SWGG 182
Query: 161 DGRGNAVAKSEEELSSAIT-----ALGGFDRS-LYIEK 192
GRG V +SE +L+ +T A+ F + +Y+EK
Sbjct: 183 GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEK 220
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 88 VAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF 147
+A L G+ + I DK+ V + G+P P+ D E A R + F
Sbjct: 63 LAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAF 122
Query: 148 GYPLMVKSKSLAYDGRGNAVAK-----SEEELSSAITALGGFDRSL-YIEKW 193
GYP+++K ++ G +AK + E L LGGF L YI+++
Sbjct: 123 GYPVVLKPVIGSW---GRLLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEY 171
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 76 CGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN 135
C ++ E E+V A ++ L + P + + QD+ +K G+P+ + +
Sbjct: 97 CEAVSTEFENVPAASLDFLARTTF-VAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIE 155
Query: 136 DLESARRAGKQFG---YPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG 183
+ P ++K+ L YDG+G + E A ALGG
Sbjct: 156 SAAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTAREARDAHAALGG 206
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 89 AIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF 147
I+++ E++G+ P ++ K K +GIP + D E A+ ++
Sbjct: 77 GIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKV 136
Query: 148 GYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGF 184
G P++VK+ LA G+G V E + AI L F
Sbjct: 137 GAPIVVKADGLA-AGKGAVVC---ETVEKAIETLDRF 169
>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
Length = 452
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 89 AIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF 147
I+ L GV C P A ++ K K HGIP ++ E A
Sbjct: 103 GIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSA 162
Query: 148 GYP-LMVKSKSLAYDGRGNAVAKSEEELSSAIT------ALGGFDRSLYIEK 192
+P L+VK+ LA G+G VAKS+EE A+ A G ++ IE+
Sbjct: 163 DFPALVVKASGLAA-GKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEE 213
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 82 EIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKY-IQKVHFSPHGIPLPEFMEVNDLESA 140
EIE + ++ +LE++G++ P A ++ ++ I+++ +P + +
Sbjct: 82 EIEAIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLF 141
Query: 141 RRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSA 177
R A GYP +VK ++ G+G +S E+L+ A
Sbjct: 142 REAVADIGYPCIVK-PVMSSSGKGQTFIRSAEQLAQA 177
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 82 EIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKY-IQKVHFSPHGIPLPEFMEVNDLESA 140
EIE + ++ +LE++G++ P A ++ ++ I+++ +P + +
Sbjct: 81 EIEAIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLF 140
Query: 141 RRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSA 177
R A GYP +VK ++ G+G +S E+L+ A
Sbjct: 141 REAVADIGYPCIVK-PVMSSSGKGQTFIRSAEQLAQA 176
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 88 VAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF 147
+A L G+ + I DK+ V + G+P P+ D E A R + F
Sbjct: 63 LAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAF 122
Query: 148 GYPLMVK 154
GYP+++K
Sbjct: 123 GYPVVLK 129
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 88 VAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF 147
+A L G+ + I DK+ V + G+P P+ D E A R + F
Sbjct: 63 LAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAF 122
Query: 148 GYPLMVK 154
GYP+++K
Sbjct: 123 GYPVVLK 129
>pdb|3VPB|A Chain A, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPB|B Chain B, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPB|C Chain C, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPB|D Chain D, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPC|A Chain A, Argx From Sulfolobus Tokodaii Complexed With Adp
pdb|3VPC|B Chain B, Argx From Sulfolobus Tokodaii Complexed With Adp
pdb|3VPC|C Chain C, Argx From Sulfolobus Tokodaii Complexed With Adp
pdb|3VPC|D Chain D, Argx From Sulfolobus Tokodaii Complexed With Adp
Length = 282
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 94 LEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMV 153
LE GV + I + DK + GIP+P+ + E+A +A +Q G+PL+
Sbjct: 67 LEAAGVHTINSSDVINVCGDKILTYSKLYREGIPIPDSIIALSAEAALKAYEQRGFPLID 126
Query: 154 K 154
K
Sbjct: 127 K 127
>pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase
From Ehrlichia Chaffeensis
Length = 442
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 103 PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDG 162
P + R+ K K +GIP ++ D SA + + PL+VK+ LA G
Sbjct: 113 PSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPLVVKADGLA-QG 171
Query: 163 RGNAVAKSEEELSSAITAL 181
+G + + EE +A+ A+
Sbjct: 172 KGTVICHTHEEAYNAVDAM 190
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 113 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 172
Query: 148 GYPLMVKSKSLAYDGRGNAVAKSEEELSSAIT-----ALGGFDRSL-YIEKW 193
GYP+++K+ S GRG V + + EL+ +I+ A F + Y+EK+
Sbjct: 173 GYPVIIKA-SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKY 223
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 93 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 152
Query: 148 GYPLMVKSKSLAYDGRGNAVAKSEEELSSAIT-----ALGGFDRSL-YIEKW 193
GYP+++K+ S GRG V + + EL+ +I+ A F + Y+EK+
Sbjct: 153 GYPVIIKA-SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKY 203
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 93 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 152
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 153 GYPVIIKA 160
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 113 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 172
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 173 GYPVIIKA 180
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 114 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 173
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 174 GYPVIIKA 181
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 96 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 155
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 156 GYPVIIKA 163
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 96 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 155
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 156 GYPVIIKA 163
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 96 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 155
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 156 GYPVIIKA 163
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EKLEQQG-VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME---VNDLESARRAGKQF 147
E++E+ G + PKA TIR++ DK G+P + +D++ R K+
Sbjct: 93 EQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI 152
Query: 148 GYPLMVKS 155
GYP+++K+
Sbjct: 153 GYPVIIKA 160
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 103 PKASTIRIIQDKYIQKVHFSPHGIPL-PEFM-EVNDLESARRAGKQFGYPLMVKSKSLAY 160
P A+ I + K K G+PL P + E DLE+ RR + GYP+++K+ +
Sbjct: 111 PPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGG 170
Query: 161 DGRGNAVAKSEEELSSAITA 180
+G V + E EL+ A+++
Sbjct: 171 G-KGMKVVEREAELAEALSS 189
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 114 KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEE 173
K K +GIP + E A+ +Q G P+++K+ LA G+G VA++ EE
Sbjct: 124 KAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKGAPIVIKADGLA-AGKGVTVAQTVEE 182
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 164 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 222
Query: 188 LYIEKW 193
+YIE++
Sbjct: 223 VYIERY 228
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 164 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 222
Query: 188 LYIEKW 193
+YIE++
Sbjct: 223 VYIERY 228
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 164 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 222
Query: 188 LYIEKW 193
+YIE++
Sbjct: 223 VYIERY 228
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 141 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199
Query: 188 LYIEKW 193
+YIE++
Sbjct: 200 VYIERY 205
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 164 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 222
Query: 188 LYIEKW 193
+YIE++
Sbjct: 223 VYIERY 228
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 141 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199
Query: 188 LYIEKW 193
+YIE++
Sbjct: 200 VYIERY 205
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI-----TALGGFDRS- 187
+ E A+ ++ G+PLM+K+ S G+G + + E EL A A F S
Sbjct: 141 IKSYELAKEFAEEAGFPLMIKATS-GGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199
Query: 188 LYIEKW 193
+YIE++
Sbjct: 200 VYIERY 205
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 104 KASTIRIIQD----------KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMV 153
K +R+I++ +Y K +G+P+PE L+ A K+ GYP+++
Sbjct: 2 KEEAVRVIEEVLKQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVL 61
Query: 154 KSKS 157
K S
Sbjct: 62 KLMS 65
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Query: 69 LPVAVVACGVLTVEIEHVDVAIMEKL-EQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIP 127
L V V GVL+ +D +M++L E +G+ P S +R +KY H I
Sbjct: 112 LDVPYVGNGVLSA-ASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY-------EHNI- 162
Query: 128 LPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRS 187
VND + YP+ VK +L G + +E EL I FDR
Sbjct: 163 ---LKLVND---------KLNYPVFVKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRK 209
Query: 188 LYIEK 192
L IE+
Sbjct: 210 LVIEQ 214
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Query: 69 LPVAVVACGVLTVEIEHVDVAIMEKL-EQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIP 127
L V V GVL+ +D +M++L E +G+ P S +R +KY H I
Sbjct: 112 LDVPYVGNGVLSA-ASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY-------EHNI- 162
Query: 128 LPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRS 187
VND + YP+ VK +L G + +E EL I FDR
Sbjct: 163 ---LKLVND---------KLNYPVFVKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRK 209
Query: 188 LYIEK 192
L IE+
Sbjct: 210 LVIEQ 214
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Query: 69 LPVAVVACGVLTVEIEHVDVAIMEKL-EQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIP 127
L V V GVL+ +D +M++L E +G+ P S +R +KY H I
Sbjct: 112 LDVPYVGNGVLSA-ASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY-------EHNI- 162
Query: 128 LPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRS 187
VND + YP+ VK +L G + +E EL I FDR
Sbjct: 163 ---LKLVND---------KLNYPVFVKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRK 209
Query: 188 LYIEK 192
L IE+
Sbjct: 210 LVIEQ 214
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 92 EKLEQQGVD-CQPKASTIRIIQDKYI-QKVHFSPHGIPLPEFME-VNDLESARRAGKQFG 148
E LE +GV P I + DK +K+ + +P +M + D + A + Q G
Sbjct: 93 EALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIG 152
Query: 149 YPLMVKSKS 157
YP+M+K+ +
Sbjct: 153 YPVMIKASA 161
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174
V D++ A ++ G+PLM+K+ S G+G A+S E+
Sbjct: 230 VKDVDEGLEAAERIGFPLMIKA-SEGGGGKGIRKAESAEDF 269
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174
V D++ A ++ G+PLM+K+ S G+G A+S E+
Sbjct: 230 VKDVDEGLEAAERIGFPLMIKA-SEGGGGKGIRKAESAEDF 269
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKS 157
V D E A R ++ GYP+M+K+ +
Sbjct: 31 VKDAEEAVRIAREIGYPVMIKASA 54
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174
V D++ A ++ G+PLM+K+ S G+G A+S E+
Sbjct: 224 VKDVDEGLEAAERIGFPLMIKA-SEGGGGKGIRKAESAEDF 263
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 134 VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174
V D++ A ++ G+PLM+K+ S G+G A+S E+
Sbjct: 214 VKDVDEGLEAAERIGFPLMIKA-SEGGGGKGIRKAESAEDF 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,088,251
Number of Sequences: 62578
Number of extensions: 238273
Number of successful extensions: 650
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 54
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)