Query 042131
Match_columns 201
No_of_seqs 134 out of 1846
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06019 phosphoribosylaminoim 100.0 2.7E-31 5.8E-36 222.8 16.5 175 17-201 3-187 (372)
2 TIGR01161 purK phosphoribosyla 100.0 7.1E-31 1.5E-35 218.8 17.0 170 23-201 10-185 (352)
3 PLN02948 phosphoribosylaminoim 100.0 1.2E-29 2.7E-34 222.1 17.9 181 14-201 20-210 (577)
4 COG0026 PurK Phosphoribosylami 100.0 2.2E-29 4.9E-34 204.2 14.8 172 17-197 2-182 (375)
5 TIGR01142 purT phosphoribosylg 100.0 4.8E-28 1E-32 203.6 16.4 171 23-201 10-193 (380)
6 PRK09288 purT phosphoribosylgl 99.9 8.9E-27 1.9E-31 196.8 16.9 178 16-201 12-206 (395)
7 COG0027 PurT Formate-dependent 99.9 1E-25 2.2E-30 178.1 13.4 172 18-197 14-201 (394)
8 TIGR00514 accC acetyl-CoA carb 99.9 9.4E-25 2E-29 187.4 16.0 177 17-201 3-211 (449)
9 PRK12833 acetyl-CoA carboxylas 99.9 1.2E-24 2.7E-29 187.3 16.6 181 13-201 2-214 (467)
10 PRK08462 biotin carboxylase; V 99.9 3.1E-24 6.7E-29 184.0 16.2 178 16-201 4-213 (445)
11 PRK08591 acetyl-CoA carboxylas 99.9 3.4E-24 7.4E-29 184.0 15.3 177 17-201 3-211 (451)
12 PRK07206 hypothetical protein; 99.9 7.6E-24 1.6E-28 180.1 15.8 172 23-201 13-205 (416)
13 PRK05586 biotin carboxylase; V 99.9 4.4E-24 9.5E-29 183.1 14.2 177 17-201 3-211 (447)
14 PRK08654 pyruvate carboxylase 99.9 1.9E-23 4.1E-28 180.7 16.1 168 25-200 15-210 (499)
15 PRK06111 acetyl-CoA carboxylas 99.9 1.2E-23 2.6E-28 180.6 14.4 176 17-200 3-210 (450)
16 PRK02186 argininosuccinate lya 99.9 2.3E-23 5E-28 191.2 15.3 169 23-201 15-195 (887)
17 PRK08463 acetyl-CoA carboxylas 99.9 4.6E-23 9.9E-28 178.0 15.8 173 17-197 3-206 (478)
18 TIGR00877 purD phosphoribosyla 99.9 2.9E-23 6.4E-28 176.9 13.6 171 24-201 12-197 (423)
19 PRK07178 pyruvate carboxylase 99.9 9.1E-23 2E-27 176.0 16.4 172 18-197 4-205 (472)
20 PRK00885 phosphoribosylamine-- 99.9 2.1E-22 4.6E-27 171.5 15.2 167 26-201 14-195 (420)
21 PRK12815 carB carbamoyl phosph 99.9 4.5E-22 9.8E-27 185.2 17.8 186 7-201 546-757 (1068)
22 PRK13789 phosphoribosylamine-- 99.9 2.9E-22 6.3E-27 170.5 15.1 177 17-201 5-201 (426)
23 PRK06395 phosphoribosylamine-- 99.9 6.4E-22 1.4E-26 168.8 16.4 176 18-201 4-197 (435)
24 PRK12767 carbamoyl phosphate s 99.9 2.9E-22 6.4E-27 165.2 13.6 164 26-201 14-196 (326)
25 PRK05294 carB carbamoyl phosph 99.9 9E-22 2E-26 183.6 17.4 185 7-201 546-759 (1066)
26 TIGR02712 urea_carbox urea car 99.9 6.6E-22 1.4E-26 184.9 16.0 171 25-201 14-209 (1201)
27 PLN02257 phosphoribosylamine-- 99.9 1.2E-21 2.7E-26 166.9 15.7 169 26-201 11-195 (434)
28 PRK01372 ddl D-alanine--D-alan 99.9 9.3E-22 2E-26 160.8 13.9 166 15-201 16-185 (304)
29 PRK13790 phosphoribosylamine-- 99.9 1.4E-21 3.1E-26 164.2 15.2 142 59-201 5-156 (379)
30 PRK14569 D-alanyl-alanine synt 99.9 1.2E-21 2.7E-26 159.6 13.9 161 16-201 16-181 (296)
31 PLN02735 carbamoyl-phosphate s 99.9 1.7E-21 3.6E-26 181.3 16.5 187 7-201 566-792 (1102)
32 COG0439 AccC Biotin carboxylas 99.9 1.6E-21 3.5E-26 164.8 14.7 166 26-199 16-208 (449)
33 TIGR01369 CPSaseII_lrg carbamo 99.9 2.6E-21 5.7E-26 180.0 17.2 178 15-201 553-759 (1050)
34 TIGR01369 CPSaseII_lrg carbamo 99.9 2.2E-21 4.7E-26 180.6 16.1 170 23-201 28-217 (1050)
35 PRK10446 ribosomal protein S6 99.9 4.2E-21 9E-26 156.9 13.9 172 19-201 10-190 (300)
36 PRK12999 pyruvate carboxylase; 99.9 6.3E-21 1.4E-25 177.5 16.8 166 25-198 18-211 (1146)
37 TIGR01235 pyruv_carbox pyruvat 99.9 5.4E-21 1.2E-25 177.4 16.2 168 26-201 13-211 (1143)
38 PRK14572 D-alanyl-alanine synt 99.9 6.7E-21 1.5E-25 158.5 15.0 185 16-201 14-223 (347)
39 TIGR01205 D_ala_D_alaTIGR D-al 99.9 3.9E-21 8.5E-26 157.8 13.0 176 16-201 12-198 (315)
40 PRK05784 phosphoribosylamine-- 99.9 1E-20 2.2E-25 162.9 15.6 171 26-201 14-212 (486)
41 PLN02735 carbamoyl-phosphate s 99.9 1.1E-20 2.4E-25 175.8 16.6 167 26-201 48-235 (1102)
42 PRK01966 ddl D-alanyl-alanine 99.9 1.1E-20 2.5E-25 156.4 14.0 180 16-201 16-214 (333)
43 PRK14568 vanB D-alanine--D-lac 99.9 1.2E-20 2.6E-25 156.8 14.0 183 16-201 16-217 (343)
44 PRK05294 carB carbamoyl phosph 99.9 1.6E-20 3.4E-25 175.3 15.8 170 23-201 29-218 (1066)
45 PRK14571 D-alanyl-alanine synt 99.8 2.7E-20 5.9E-25 152.0 13.0 160 16-201 13-177 (299)
46 PRK12815 carB carbamoyl phosph 99.8 5.4E-20 1.2E-24 171.5 16.3 170 23-201 29-218 (1068)
47 PRK13278 purP 5-formaminoimida 99.8 6.4E-20 1.4E-24 151.9 13.6 160 25-201 30-206 (358)
48 TIGR00768 rimK_fam alpha-L-glu 99.8 5.1E-20 1.1E-24 148.3 12.6 159 23-198 12-175 (277)
49 TIGR02144 LysX_arch Lysine bio 99.8 5.5E-19 1.2E-23 142.8 14.2 159 22-197 10-174 (280)
50 PRK06849 hypothetical protein; 99.8 1.6E-19 3.4E-24 152.5 10.4 175 16-201 4-201 (389)
51 COG0151 PurD Phosphoribosylami 99.8 3.2E-18 7E-23 141.3 14.8 133 68-201 50-196 (428)
52 COG4770 Acetyl/propionyl-CoA c 99.8 1.6E-18 3.4E-23 146.6 13.1 166 26-197 16-206 (645)
53 KOG0238 3-Methylcrotonyl-CoA c 99.8 2.3E-18 4.9E-23 143.9 12.8 167 26-198 12-203 (670)
54 COG0458 CarB Carbamoylphosphat 99.8 2.7E-18 5.9E-23 141.3 13.0 166 23-197 17-200 (400)
55 PRK06524 biotin carboxylase-li 99.8 5.2E-18 1.1E-22 144.5 14.0 112 88-201 116-232 (493)
56 PRK14570 D-alanyl-alanine synt 99.8 8.2E-18 1.8E-22 140.5 13.3 183 16-201 15-223 (364)
57 PRK14573 bifunctional D-alanyl 99.8 1.5E-17 3.2E-22 151.9 16.0 183 17-201 465-663 (809)
58 PF13535 ATP-grasp_4: ATP-gras 99.8 1.1E-18 2.5E-23 132.1 7.1 91 110-201 1-95 (184)
59 COG0189 RimK Glutathione synth 99.7 1.2E-17 2.6E-22 136.8 11.2 176 21-197 16-205 (318)
60 PF15632 ATPgrasp_Ter: ATP-gra 99.7 2E-17 4.4E-22 135.3 12.2 168 25-201 12-213 (329)
61 COG1038 PycA Pyruvate carboxyl 99.7 5E-17 1.1E-21 142.0 13.4 166 26-198 21-213 (1149)
62 PRK02471 bifunctional glutamat 99.7 1.8E-16 4E-21 142.6 13.6 144 22-201 432-579 (752)
63 TIGR03103 trio_acet_GNAT GNAT- 99.7 2.6E-16 5.5E-21 137.8 14.0 141 23-201 243-384 (547)
64 PRK14016 cyanophycin synthetas 99.7 1.7E-16 3.7E-21 143.0 11.7 100 101-201 202-302 (727)
65 TIGR01435 glu_cys_lig_rel glut 99.7 7.5E-16 1.6E-20 137.3 11.9 99 102-201 464-566 (737)
66 TIGR02068 cya_phycin_syn cyano 99.7 7.4E-16 1.6E-20 141.2 11.8 98 103-201 203-301 (864)
67 PRK13277 5-formaminoimidazole- 99.6 8.8E-16 1.9E-20 126.1 9.5 164 23-201 27-213 (366)
68 PF07478 Dala_Dala_lig_C: D-al 99.6 5.6E-16 1.2E-20 119.7 7.4 81 120-201 1-85 (203)
69 PF01071 GARS_A: Phosphoribosy 99.6 2.1E-15 4.5E-20 114.5 10.0 88 113-201 2-96 (194)
70 PF02786 CPSase_L_D2: Carbamoy 99.6 3.3E-15 7.2E-20 115.9 10.4 87 113-200 1-96 (211)
71 PF02222 ATP-grasp: ATP-grasp 99.6 1.5E-15 3.2E-20 114.0 7.2 75 121-197 1-75 (172)
72 PF08443 RimK: RimK-like ATP-g 99.6 6.1E-15 1.3E-19 112.9 7.5 86 111-197 1-87 (190)
73 KOG0369 Pyruvate carboxylase [ 99.6 3.1E-14 6.8E-19 122.8 12.4 164 26-197 47-238 (1176)
74 PRK12458 glutathione synthetas 99.6 1.9E-14 4E-19 119.3 10.8 98 95-197 111-211 (338)
75 TIGR01380 glut_syn glutathione 99.6 7.3E-14 1.6E-18 114.7 13.2 166 22-195 18-201 (312)
76 PLN02941 inositol-tetrakisphos 99.5 5.5E-14 1.2E-18 115.3 11.7 140 26-195 40-194 (328)
77 PRK05246 glutathione synthetas 99.5 3.2E-13 7E-18 111.2 12.2 170 21-196 18-203 (316)
78 KOG0237 Glycinamide ribonucleo 99.4 2.4E-12 5.2E-17 109.8 11.9 134 67-201 54-202 (788)
79 COG1181 DdlA D-alanine-D-alani 99.3 1.3E-11 2.7E-16 101.3 10.4 170 17-201 16-194 (317)
80 PF02655 ATP-grasp_3: ATP-gras 99.3 8.1E-13 1.7E-17 98.6 1.7 77 111-201 1-77 (161)
81 KOG0370 Multifunctional pyrimi 99.3 1.1E-11 2.4E-16 110.5 8.7 169 23-197 940-1118(1435)
82 TIGR01016 sucCoAbeta succinyl- 99.3 2.8E-11 6.1E-16 102.2 10.5 89 113-201 4-110 (386)
83 COG3919 Predicted ATP-grasp en 99.2 1E-10 2.2E-15 92.9 10.8 107 89-197 90-202 (415)
84 PRK00696 sucC succinyl-CoA syn 99.2 7.9E-11 1.7E-15 99.6 10.5 88 113-201 4-110 (388)
85 COG1759 5-formaminoimidazole-4 99.2 3.3E-11 7.1E-16 96.4 7.2 163 23-200 28-208 (361)
86 TIGR02291 rimK_rel_E_lig alpha 99.0 9.5E-10 2.1E-14 89.9 8.7 71 101-172 25-98 (317)
87 KOG0368 Acetyl-CoA carboxylase 99.0 6.9E-09 1.5E-13 96.4 13.0 114 67-181 123-271 (2196)
88 PF13549 ATP-grasp_5: ATP-gras 99.0 2.1E-09 4.6E-14 83.9 8.1 90 112-201 10-115 (222)
89 COG2232 Predicted ATP-dependen 98.9 7.6E-10 1.7E-14 89.1 3.7 153 22-201 19-191 (389)
90 COG0045 SucC Succinyl-CoA synt 98.8 5.6E-08 1.2E-12 80.2 9.4 86 114-200 5-107 (387)
91 PF14397 ATPgrasp_ST: Sugar-tr 98.7 5.9E-08 1.3E-12 78.8 7.9 95 102-197 15-128 (285)
92 COG1821 Predicted ATP-utilizin 98.7 3.7E-08 8.1E-13 76.9 5.2 147 22-201 21-177 (307)
93 PF08442 ATP-grasp_2: ATP-gras 98.7 1.5E-07 3.3E-12 72.4 8.5 83 114-197 4-104 (202)
94 PRK14046 malate--CoA ligase su 98.6 2.6E-07 5.6E-12 78.2 9.9 87 114-200 5-109 (392)
95 KOG0370 Multifunctional pyrimi 98.5 5.2E-08 1.1E-12 87.7 2.4 166 23-196 399-580 (1435)
96 PF14403 CP_ATPgrasp_2: Circul 98.5 6.3E-07 1.4E-11 76.3 8.4 166 15-197 184-386 (445)
97 PF02955 GSH-S_ATP: Prokaryoti 98.5 4.6E-07 1E-11 68.1 6.6 67 128-196 12-80 (173)
98 PLN00124 succinyl-CoA ligase [ 98.5 1.3E-06 2.7E-11 74.5 9.8 87 112-200 30-144 (422)
99 PF05770 Ins134_P3_kin: Inosit 98.4 6.2E-07 1.3E-11 73.1 5.9 142 25-196 25-181 (307)
100 PLN02235 ATP citrate (pro-S)-l 98.2 7.9E-06 1.7E-10 69.1 9.5 81 115-196 9-113 (423)
101 PF14398 ATPgrasp_YheCD: YheC/ 98.2 1.4E-05 3.1E-10 64.2 9.3 97 95-199 5-126 (262)
102 PF06849 DUF1246: Protein of u 97.0 0.00012 2.6E-09 51.3 -0.4 103 25-132 10-123 (124)
103 PF00289 CPSase_L_chain: Carba 96.8 0.00057 1.2E-08 47.6 1.4 77 25-108 15-110 (110)
104 PF14305 ATPgrasp_TupA: TupA-l 96.3 0.013 2.7E-07 46.5 6.1 92 103-197 10-121 (239)
105 PF03133 TTL: Tubulin-tyrosine 96.1 0.0056 1.2E-07 49.8 3.4 43 150-196 67-109 (292)
106 KOG2799 Succinyl-CoA synthetas 96.1 0.049 1.1E-06 45.2 8.7 68 113-181 26-105 (434)
107 PF11379 DUF3182: Protein of u 96.1 0.024 5.2E-07 46.6 6.8 68 128-196 114-186 (355)
108 PF02750 Synapsin_C: Synapsin, 95.2 0.082 1.8E-06 40.3 6.4 89 103-196 1-97 (203)
109 KOG3895 Synaptic vesicle prote 94.1 0.18 4E-06 41.8 6.4 99 93-196 180-286 (488)
110 COG2308 Uncharacterized conser 94.0 0.11 2.4E-06 44.3 5.0 72 122-195 340-413 (488)
111 KOG1057 Arp2/3 complex-interac 93.2 0.54 1.2E-05 43.0 8.2 121 75-197 90-240 (1018)
112 PF04174 CP_ATPgrasp_1: A circ 93.0 0.15 3.3E-06 42.3 4.3 68 122-191 262-330 (330)
113 PF10281 Ish1: Putative stress 90.1 1 2.2E-05 24.8 4.3 31 114-146 6-36 (38)
114 TIGR02049 gshA_ferroox glutama 89.3 1.6 3.4E-05 36.7 6.7 47 149-196 257-313 (403)
115 KOG1447 GTP-specific succinyl- 85.8 2.7 5.8E-05 33.9 5.8 67 114-181 24-102 (412)
116 KOG2156 Tubulin-tyrosine ligas 80.2 1 2.2E-05 39.5 1.6 45 129-174 284-330 (662)
117 KOG2158 Tubulin-tyrosine ligas 78.7 6.4 0.00014 34.2 5.8 42 131-173 209-250 (565)
118 COG1181 DdlA D-alanine-D-alani 78.5 0.073 1.6E-06 44.0 -5.6 77 89-166 25-104 (317)
119 PF02951 GSH-S_N: Prokaryotic 74.0 1.4 3E-05 31.1 0.6 21 23-43 19-39 (119)
120 PF08886 GshA: Glutamate-cyste 71.8 1.8 3.8E-05 36.6 0.8 45 151-196 263-316 (404)
121 COG1087 GalE UDP-glucose 4-epi 68.4 7.6 0.00016 32.0 3.8 45 25-74 14-60 (329)
122 PF02639 DUF188: Uncharacteriz 66.6 44 0.00096 23.8 8.5 91 27-128 2-106 (130)
123 COG1042 Acyl-CoA synthetase (N 64.4 20 0.00043 32.5 5.9 79 111-195 470-555 (598)
124 PF02844 GARS_N: Phosphoribosy 62.2 5.8 0.00013 27.0 1.7 47 64-110 45-99 (100)
125 KOG2157 Predicted tubulin-tyro 59.4 11 0.00024 33.3 3.3 50 148-198 199-253 (497)
126 COG1671 Uncharacterized protei 54.8 83 0.0018 23.1 8.4 92 26-128 16-121 (150)
127 PRK13397 3-deoxy-7-phosphohept 54.6 1.1E+02 0.0024 24.5 8.1 87 91-194 72-160 (250)
128 TIGR00715 precor6x_red precorr 54.4 68 0.0015 25.7 7.0 64 114-180 186-253 (256)
129 PRK05849 hypothetical protein; 53.7 90 0.0019 29.4 8.4 88 111-198 8-121 (783)
130 TIGR01361 DAHP_synth_Bsub phos 44.2 1.6E+02 0.0034 23.7 7.6 51 131-192 116-168 (260)
131 TIGR00441 gmhA phosphoheptose 42.4 16 0.00035 26.6 1.6 36 26-68 97-133 (154)
132 cd05014 SIS_Kpsf KpsF-like pro 42.4 15 0.00032 25.4 1.3 33 26-65 65-98 (128)
133 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.3 9.4 0.0002 26.4 0.3 26 26-51 64-90 (126)
134 PRK01438 murD UDP-N-acetylmura 42.1 11 0.00023 32.9 0.6 43 1-43 1-47 (480)
135 cd03418 GRX_GRXb_1_3_like Glut 41.7 62 0.0013 19.7 4.1 39 115-153 14-56 (75)
136 PRK08057 cobalt-precorrin-6x r 41.3 1.4E+02 0.003 23.9 6.8 64 114-180 179-245 (248)
137 TIGR01219 Pmev_kin_ERG8 phosph 41.3 1.1E+02 0.0023 26.9 6.5 66 109-180 360-431 (454)
138 COG0014 ProA Gamma-glutamyl ph 39.8 1.6E+02 0.0035 25.4 7.1 97 90-199 276-378 (417)
139 cd05006 SIS_GmhA Phosphoheptos 39.7 19 0.00042 26.7 1.6 37 26-69 119-156 (177)
140 PRK03659 glutathione-regulated 37.5 12 0.00025 34.0 0.1 52 24-80 412-469 (601)
141 TIGR03586 PseI pseudaminic aci 37.0 2.5E+02 0.0054 23.5 8.5 88 89-195 81-171 (327)
142 PF13380 CoA_binding_2: CoA bi 35.9 49 0.0011 22.9 3.1 20 24-43 16-35 (116)
143 PF15632 ATPgrasp_Ter: ATP-gra 35.5 1.2E+02 0.0025 25.4 5.7 79 90-183 58-143 (329)
144 TIGR01209 RNA ligase, Pab1020 35.4 74 0.0016 27.1 4.5 67 115-183 177-254 (374)
145 TIGR02964 xanthine_xdhC xanthi 34.9 16 0.00036 29.0 0.6 30 14-43 98-131 (246)
146 PF09370 TIM-br_sig_trns: TIM- 34.5 1.5E+02 0.0033 24.0 5.9 63 116-181 141-204 (268)
147 TIGR03127 RuMP_HxlB 6-phospho 33.8 18 0.0004 26.8 0.7 32 26-64 90-122 (179)
148 COG0569 TrkA K+ transport syst 33.7 28 0.0006 27.2 1.7 55 23-80 11-71 (225)
149 PF13344 Hydrolase_6: Haloacid 32.6 79 0.0017 21.1 3.6 73 88-178 20-95 (101)
150 PRK13938 phosphoheptose isomer 32.2 27 0.00058 26.8 1.4 38 26-70 131-169 (196)
151 PF11360 DUF3110: Protein of u 32.1 1.2E+02 0.0026 20.0 4.3 43 112-155 33-75 (86)
152 PF00730 HhH-GPD: HhH-GPD supe 32.0 17 0.00037 24.4 0.3 25 102-127 27-51 (108)
153 PRK10676 DNA-binding transcrip 31.6 1.3E+02 0.0027 24.2 5.2 59 115-179 32-90 (263)
154 cd05710 SIS_1 A subgroup of th 31.2 20 0.00043 24.9 0.4 26 26-51 65-91 (120)
155 TIGR00637 ModE_repress ModE mo 30.1 1.7E+02 0.0037 19.6 4.9 63 112-180 14-76 (99)
156 smart00851 MGS MGS-like domain 29.7 1.5E+02 0.0033 19.0 4.6 57 89-155 4-62 (90)
157 cd07894 Adenylation_RNA_ligase 29.3 1.3E+02 0.0028 25.3 5.0 68 114-183 144-221 (342)
158 PRK13937 phosphoheptose isomer 29.3 30 0.00065 26.1 1.2 35 26-67 124-159 (188)
159 PRK13396 3-deoxy-7-phosphohept 29.2 3.5E+02 0.0077 22.9 8.0 41 131-182 192-232 (352)
160 PF10727 Rossmann-like: Rossma 28.9 12 0.00027 26.5 -0.9 31 13-43 7-41 (127)
161 PRK12595 bifunctional 3-deoxy- 28.7 3.6E+02 0.0079 22.8 8.3 85 92-195 176-264 (360)
162 cd05005 SIS_PHI Hexulose-6-pho 27.8 30 0.00064 25.7 0.9 26 26-51 93-119 (179)
163 COG4029 Uncharacterized protei 27.6 2E+02 0.0044 20.4 4.9 43 135-182 17-59 (142)
164 PF01653 DNA_ligase_aden: NAD- 27.6 1.4E+02 0.003 24.8 4.9 34 113-146 235-269 (315)
165 COG1577 ERG12 Mevalonate kinas 27.4 1.4E+02 0.0031 24.6 4.9 48 119-174 237-285 (307)
166 TIGR03569 NeuB_NnaB N-acetylne 27.3 3.7E+02 0.008 22.5 9.0 75 89-182 80-156 (329)
167 PRK00124 hypothetical protein; 26.8 2.6E+02 0.0056 20.5 8.2 18 26-43 15-32 (151)
168 COG1737 RpiR Transcriptional r 26.7 31 0.00068 27.9 1.0 33 26-65 195-228 (281)
169 COG1819 Glycosyl transferases, 26.2 4E+02 0.0088 22.8 7.7 89 26-128 256-346 (406)
170 CHL00194 ycf39 Ycf39; Provisio 26.1 1.2E+02 0.0027 24.5 4.4 100 24-128 13-139 (317)
171 cd02010 TPP_ALS Thiamine pyrop 26.0 1E+02 0.0022 22.9 3.5 33 166-198 141-173 (177)
172 PRK13398 3-deoxy-7-phosphohept 25.8 3.5E+02 0.0077 21.8 7.6 41 131-182 118-158 (266)
173 PF02571 CbiJ: Precorrin-6x re 25.8 2.2E+02 0.0047 22.7 5.6 64 113-180 182-249 (249)
174 PF12146 Hydrolase_4: Putative 25.7 38 0.00083 21.7 1.1 29 15-43 15-51 (79)
175 PHA02117 glutathionylspermidin 25.7 26 0.00056 30.1 0.3 91 104-199 262-355 (397)
176 COG0111 SerA Phosphoglycerate 25.6 51 0.0011 27.4 2.0 59 13-81 139-203 (324)
177 PRK10537 voltage-gated potassi 25.6 43 0.00093 28.7 1.6 20 24-43 252-271 (393)
178 PF07805 HipA_N: HipA-like N-t 25.3 52 0.0011 20.9 1.7 27 110-136 42-68 (81)
179 PRK03562 glutathione-regulated 24.9 31 0.00067 31.4 0.7 54 16-74 400-458 (621)
180 PRK03892 ribonuclease P protei 24.8 3.4E+02 0.0074 21.2 7.4 78 86-182 118-195 (216)
181 cd03371 TPP_PpyrDC Thiamine py 24.8 1.4E+02 0.003 22.6 4.1 34 162-195 130-163 (188)
182 PRK00414 gmhA phosphoheptose i 24.6 37 0.0008 25.8 1.0 35 26-67 129-164 (192)
183 PF02142 MGS: MGS-like domain 24.5 1.2E+02 0.0026 19.8 3.4 58 89-156 4-68 (95)
184 cd05013 SIS_RpiR RpiR-like pro 24.4 38 0.00083 23.3 1.0 26 26-51 78-104 (139)
185 cd03375 TPP_OGFOR Thiamine pyr 24.1 1.4E+02 0.003 22.6 4.1 37 161-197 148-186 (193)
186 TIGR01658 EYA-cons_domain eyes 24.1 1.1E+02 0.0024 24.7 3.4 42 111-152 213-254 (274)
187 cd02009 TPP_SHCHC_synthase Thi 23.7 1.4E+02 0.0031 22.0 4.0 29 166-194 146-174 (175)
188 PRK07956 ligA NAD-dependent DN 23.5 1.7E+02 0.0037 27.1 5.1 36 112-147 236-272 (665)
189 KOG4840 Predicted hydrolases o 23.3 3.5E+02 0.0077 21.6 6.0 46 137-182 55-101 (299)
190 cd05124 AFK Actin-Fragmin Kina 23.2 1.8E+02 0.0039 23.1 4.5 30 114-143 36-66 (238)
191 PF02593 dTMP_synthase: Thymid 22.9 1.7E+02 0.0036 23.0 4.3 95 73-171 49-153 (217)
192 COG1244 Predicted Fe-S oxidore 22.9 1.8E+02 0.004 24.4 4.6 68 112-182 247-317 (358)
193 cd00114 LIGANc NAD+ dependent 22.8 1.6E+02 0.0035 24.3 4.4 35 113-147 228-263 (307)
194 TIGR00575 dnlj DNA ligase, NAD 22.7 2.2E+02 0.0048 26.2 5.7 36 112-147 224-260 (652)
195 TIGR00640 acid_CoA_mut_C methy 22.2 1.7E+02 0.0036 20.8 3.9 7 93-99 25-31 (132)
196 PRK08673 3-deoxy-7-phosphohept 22.0 4.8E+02 0.01 21.9 8.0 49 133-192 186-236 (335)
197 PRK13744 conjugal transfer pro 21.6 70 0.0015 19.7 1.6 15 1-15 23-37 (83)
198 PF01380 SIS: SIS domain SIS d 21.6 23 0.0005 24.3 -0.6 26 26-51 71-97 (131)
199 TIGR01220 Pmev_kin_Gr_pos phos 21.2 3.6E+02 0.0079 22.6 6.4 44 137-182 300-346 (358)
200 PRK01710 murD UDP-N-acetylmura 20.8 2.9E+02 0.0064 23.9 5.9 28 16-43 14-45 (458)
201 PF00462 Glutaredoxin: Glutare 20.7 1.3E+02 0.0028 17.5 2.7 38 115-153 13-54 (60)
202 cd00279 YlxR Ylxr homologs; gr 20.5 2E+02 0.0043 18.5 3.6 21 160-180 36-56 (79)
203 PF04296 DUF448: Protein of un 20.4 1.4E+02 0.003 19.0 2.9 29 151-180 27-55 (78)
204 PF03683 UPF0175: Uncharacteri 20.3 2.3E+02 0.005 17.9 3.9 28 110-142 44-71 (76)
205 cd02018 TPP_PFOR Thiamine pyro 20.1 1.8E+02 0.0039 22.9 4.1 38 161-198 166-206 (237)
206 PRK00257 erythronate-4-phospha 20.1 81 0.0018 26.9 2.2 31 13-43 113-147 (381)
207 COG2266 GTP:adenosylcobinamide 20.0 1.7E+02 0.0038 22.1 3.7 67 89-159 54-126 (177)
No 1
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.97 E-value=2.7e-31 Score=222.75 Aligned_cols=175 Identities=27% Similarity=0.421 Sum_probs=158.0
Q ss_pred chhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccccCC
Q 042131 17 PTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIEHVD 87 (201)
Q Consensus 17 ~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~~i~ 87 (201)
++|++++ |+|++.+|+++||+|+++|+ +++|+.++ ++..+..++.|.+.+. .+|++++++++++
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~-------ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~ 75 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV-------ADEVIVADYDDVAALRELAEQCDVITYEFENVP 75 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh-------CceEEecCCCCHHHHHHHHhcCCEEEeCcCCCC
Confidence 4566664 47999999999999999999 88888888 8888888899988776 8999999999999
Q ss_pred HHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE
Q 042131 88 VAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV 167 (201)
Q Consensus 88 ~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~ 167 (201)
...++.+++. ..++|+++++++++||..+|++|+++|||+|++..+++.+++.++.+++|||+|+||..|||+|+|+++
T Consensus 76 ~~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~ 154 (372)
T PRK06019 76 AEALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWV 154 (372)
T ss_pred HHHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEE
Confidence 9888888877 557899999999999999999999999999999999999999998999999999999998789999999
Q ss_pred cCCHHHHHHHHHHhcCCCCceEEeecCC-CceeeC
Q 042131 168 AKSEEELSSAITALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 168 ~~~~~el~~~~~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
+++.+|+..++..+... .+++|+||+ +.||||
T Consensus 155 v~~~~el~~a~~~~~~~--~~ivEe~I~~~~E~sv 187 (372)
T PRK06019 155 IRSAEDLEAAWALLGSV--PCILEEFVPFEREVSV 187 (372)
T ss_pred ECCHHHHHHHHHhcCCC--CEEEEecCCCCeEEEE
Confidence 99999999999987544 499999999 589885
No 2
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.97 E-value=7.1e-31 Score=218.81 Aligned_cols=170 Identities=31% Similarity=0.530 Sum_probs=154.6
Q ss_pred cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccccCCHHHHHHHHHC
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIEHVDVAIMEKLEQQ 97 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~~i~~~~~~~l~~~ 97 (201)
.+++++++|+++||+|+++|. +++|..++ +|+.++.++.|.+.+. .+|+++++.++++...++.+++.
T Consensus 10 l~~~l~~aa~~lG~~v~~~d~~~~~p~~~~-------ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~ 82 (352)
T TIGR01161 10 LGRMLALAARPLGIKVHVLDPDANSPAVQV-------ADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR 82 (352)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCChhHh-------CceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC
Confidence 457999999999999999999 88888888 8888888999977775 78999999999988888889988
Q ss_pred CCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHH
Q 042131 98 GVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSA 177 (201)
Q Consensus 98 g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~ 177 (201)
|.+++++++++++++||..++++|+++|||+|++..+++.+++.+++++++||+|+||..|||+|+|++++++.+|+.++
T Consensus 83 g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a 162 (352)
T TIGR01161 83 GVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQA 162 (352)
T ss_pred CCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHH
Confidence 88788999999999999999999999999999999999999999999999999999999987789999999999999999
Q ss_pred HHHhcCCCCceEEeecCC-CceeeC
Q 042131 178 ITALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 178 ~~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
++.+... .+|+||||+ |.|+||
T Consensus 163 ~~~~~~~--~~lvEe~I~~~~E~sv 185 (352)
T TIGR01161 163 AKELGDR--ECIVEEFVPFERELSV 185 (352)
T ss_pred HHhcCCC--cEEEEecCCCCeEEEE
Confidence 9887544 499999999 589875
No 3
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.97 E-value=1.2e-29 Score=222.07 Aligned_cols=181 Identities=59% Similarity=0.907 Sum_probs=162.8
Q ss_pred CCCchhhhh----cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccc
Q 042131 14 LPSPTIHCR----RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIE 84 (201)
Q Consensus 14 ~~~~~i~~~----~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~ 84 (201)
..+++|+++ .|+|++++|+++|++|+++|. ++.|..++ +|..+..++.|.+.+. .+|+++++.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~-------AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSV-------AARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhh-------CceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 456788877 457999999999999999999 88888888 8888888899987775 7899999999
Q ss_pred cCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 85 HVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 85 ~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
+++...++.+++.|++++++++++.+++||..+|++|+++|||+|++..+++.+++.++.+++|||+|+||..+||+|+|
T Consensus 93 ~v~~~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~G 172 (577)
T PLN02948 93 HVDVDTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYDGRG 172 (577)
T ss_pred CCCHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCC
Confidence 99888888999998878999999999999999999999999999999999999999888999999999999998888999
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceeeC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~sv 201 (201)
++++++.+|+.++++.+......+++|+||+| .|+||
T Consensus 173 v~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV 210 (577)
T PLN02948 173 NAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAV 210 (577)
T ss_pred eEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEE
Confidence 99999999999999987655556999999998 78875
No 4
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=204.18 Aligned_cols=172 Identities=26% Similarity=0.443 Sum_probs=156.3
Q ss_pred chhhhh----cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccccCC
Q 042131 17 PTIHCR----RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIEHVD 87 (201)
Q Consensus 17 ~~i~~~----~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~~i~ 87 (201)
++|.|+ -|||++.+|+++|++++++|+ +++|+.++ ++.++..+++|.+++. .||++|+++|+++
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v-------a~~~i~~~~dD~~al~ela~~~DViT~EfE~V~ 74 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQV-------ADRVIVAAYDDPEALRELAAKCDVITYEFENVP 74 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhc-------ccceeecCCCCHHHHHHHHhhCCEEEEeeccCC
Confidence 456666 458999999999999999999 99999999 8999999999988887 9999999999999
Q ss_pred HHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE
Q 042131 88 VAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV 167 (201)
Q Consensus 88 ~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~ 167 (201)
.+.++.+.+. .++.|+++++++..||...|++|.++|+|+|+|..+++.+++..+++++|+|.|+|...|||+|||+++
T Consensus 75 ~~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~ 153 (375)
T COG0026 75 AEALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWR 153 (375)
T ss_pred HHHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCceEEEeccccccCCCeEE
Confidence 9999999988 778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCCceEEeecCCCc
Q 042131 168 AKSEEELSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 168 ~~~~~el~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
+++.+++........... ..++|+|++.+
T Consensus 154 i~~~~~~~~~~~~~~~~~-~~vlE~fV~F~ 182 (375)
T COG0026 154 IRSDADLELRAAGLAEGG-VPVLEEFVPFE 182 (375)
T ss_pred eeCcccchhhHhhhhccC-ceeEEeecccc
Confidence 999999887665543322 24999999975
No 5
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.96 E-value=4.8e-28 Score=203.60 Aligned_cols=171 Identities=19% Similarity=0.288 Sum_probs=149.4
Q ss_pred cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccCCHHHHHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHVDVAIMEKLE 95 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i~~~~~~~l~ 95 (201)
.|++++++|+++|++|++++. ++.+..++ ++..+..++.|.+.+. .+|++++..+.+....+..++
T Consensus 10 ~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~-------ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~~~~~~~l~ 82 (380)
T TIGR01142 10 LGKEVAIEAQRLGVEVIAVDRYANAPAMQV-------AHRSYVINMLDGDALRAVIEREKPDYIVPEIEAIATDALFELE 82 (380)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCCchhhh-------CceEEEcCCCCHHHHHHHHHHhCCCEEEeccCccCHHHHHHHH
Confidence 357999999999999999999 88888888 8888777888877765 689998888888877778888
Q ss_pred HCCCcccccHHHHHHHhCHHHHHHHH-hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHH
Q 042131 96 QQGVDCQPKASTIRIIQDKYIQKVHF-SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174 (201)
Q Consensus 96 ~~g~~~~~~~~~~~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el 174 (201)
+.|+++++++++++++.||..+++++ +++|||+|++..+++.+++.+++++++||+|+||.+| ++|+||+++++.+||
T Consensus 83 ~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~VvKP~~g-~~s~gv~~v~~~~el 161 (380)
T TIGR01142 83 KEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPVMS-SSGKGQSVVRGPEDI 161 (380)
T ss_pred hcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCCEEEEECCC-cCCCCeEEECCHHHH
Confidence 88887789999999999999999985 8999999999999999999988899999999999996 599999999999999
Q ss_pred HHHHHHhcC----CCCceEEeecCCC-ceeeC
Q 042131 175 SSAITALGG----FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 175 ~~~~~~~~~----~~~~~lvEe~i~G-~e~sv 201 (201)
..+++.+.. ..+.+|+||||+| .|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv 193 (380)
T TIGR01142 162 EKAWEYAQEGARGGAGRVIVEEFIDFDYEITL 193 (380)
T ss_pred HHHHHHHHhhccCCCCCEEEEEecCCCEEEEE
Confidence 999987632 2346999999996 58864
No 6
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.95 E-value=8.9e-27 Score=196.84 Aligned_cols=178 Identities=19% Similarity=0.270 Sum_probs=150.7
Q ss_pred Cchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccc
Q 042131 16 SPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIE 84 (201)
Q Consensus 16 ~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~ 84 (201)
.++|++++ |++++.+++++||++++++. ++.+...+ ++..+..++.|.+.+. .+|.++...+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~-------ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-------AHRSHVIDMLDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHh-------hhheEECCCCCHHHHHHHHHHhCCCEEEEeeC
Confidence 34677663 46888999999999999999 77777777 7777777777877665 6888888778
Q ss_pred cCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHH-hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 85 HVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHF-SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 85 ~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
.+....+..+++.|+++++++++++++.||..+|+++ +++|||+|++..+++.+++.+++++++||+|+||..| ++|+
T Consensus 85 ~~~~~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~P~VvKP~~g-~~s~ 163 (395)
T PRK09288 85 AIATDALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMS-SSGK 163 (395)
T ss_pred cCCHHHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCCCEEEEeCCC-cCCC
Confidence 8776667778888887789999999999999999999 4899999999999999999999999999999999985 5999
Q ss_pred CeEEcCCHHHHHHHHHHhcC----CCCceEEeecCC-CceeeC
Q 042131 164 GNAVAKSEEELSSAITALGG----FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~----~~~~~lvEe~i~-G~e~sv 201 (201)
||++++|.+|+.++++.+.. ....+||||||+ |.|++|
T Consensus 164 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv 206 (395)
T PRK09288 164 GQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITL 206 (395)
T ss_pred CeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEE
Confidence 99999999999999987642 124699999999 778875
No 7
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.93 E-value=1e-25 Score=178.13 Aligned_cols=172 Identities=19% Similarity=0.286 Sum_probs=157.2
Q ss_pred hhhhh----cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccC
Q 042131 18 TIHCR----RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHV 86 (201)
Q Consensus 18 ~i~~~----~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i 86 (201)
+++++ -|+.++.+++++|.+|+.+|. .+.|++++ ++..++.++.|.+++. +.|.+..+.+.+
T Consensus 14 kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqV-------Ahrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI 86 (394)
T COG0027 14 KVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-------AHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI 86 (394)
T ss_pred EEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhh-------hhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh
Confidence 35555 357999999999999999999 99999999 8999999999998887 889998899999
Q ss_pred CHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHH-hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 87 DVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHF-SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 87 ~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
..+.+..+++.|..+.|+..+.+++.|+...|+++ +++|+|+.+|..+++.+++.++++++||||++||+.++ +|+|.
T Consensus 87 ~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSS-SGkGq 165 (394)
T COG0027 87 ATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSS-SGKGQ 165 (394)
T ss_pred hHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeeccccccc-CCCCc
Confidence 88999999999999999999999999999999998 68999999999999999999999999999999999965 99999
Q ss_pred EEcCCHHHHHHHHHHhc----CCCCceEEeecCCCc
Q 042131 166 AVAKSEEELSSAITALG----GFDRSLYIEKWAPFV 197 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~----~~~~~~lvEe~i~G~ 197 (201)
.++++.++++.+|+... ...+.+++|+||+.+
T Consensus 166 svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd 201 (394)
T COG0027 166 SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFD 201 (394)
T ss_pred eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecce
Confidence 99999999999999864 245679999999876
No 8
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.93 E-value=9.4e-25 Score=187.38 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=138.6
Q ss_pred chhhhhcc----cccccccccCCCeEEEECC-C--CCcccccCCCCCCCCCCcccc-------CCCCHhhhh------cC
Q 042131 17 PTIHCRRG----RRFPVDRPLKDSRLWELDS-G--AIAARGISPPPLLDSARPEVH-------NFELPVAVV------AC 76 (201)
Q Consensus 17 ~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~--~~~~~~~~~~~~~~a~~~~~~-------~~~d~~~l~------~~ 76 (201)
.+|+++++ .+++++|+++|++|+++++ . +.+..++ +|+.+.. +|.|.+.++ .+
T Consensus 3 kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~-------aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~i 75 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLL-------ADEAVCIGPAPSAKSYLNIPNIISAAEITGA 75 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhccccccc-------CCEEEEcCCCCchhchhCHHHHHHHHHHhCC
Confidence 35666533 4788999999999999987 3 3455566 6765542 566766665 77
Q ss_pred CeEEeccc--cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCE
Q 042131 77 GVLTVEIE--HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 77 d~i~~~~~--~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~ 151 (201)
|++..... .-...+...+++.|++ +++++++++++.||..++++|+++|||+|++. .+++.+++..++++++||+
T Consensus 76 d~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~Pv 155 (449)
T TIGR00514 76 DAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPV 155 (449)
T ss_pred CEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCE
Confidence 88764332 1123456778889985 58999999999999999999999999998864 6789999998999999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCC-ceeeC
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G-~e~sv 201 (201)
||||.+|+ ||+||+++++.+||.++++... .....++|||||+| .||+|
T Consensus 156 vvKP~~g~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v 211 (449)
T TIGR00514 156 IIKATAGG-GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEI 211 (449)
T ss_pred EEEeCCCC-CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEE
Confidence 99999986 8999999999999999987542 12345999999997 46653
No 9
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.93 E-value=1.2e-24 Score=187.30 Aligned_cols=181 Identities=22% Similarity=0.263 Sum_probs=141.3
Q ss_pred CCCCchhhhhcc----cccccccccCCCeEEEECC-C--CCcccccCCCCCCCCCCccc-c------CCCCHhhhh----
Q 042131 13 PLPSPTIHCRRG----RRFPVDRPLKDSRLWELDS-G--AIAARGISPPPLLDSARPEV-H------NFELPVAVV---- 74 (201)
Q Consensus 13 ~~~~~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~--~~~~~~~~~~~~~~a~~~~~-~------~~~d~~~l~---- 74 (201)
|...++|++.++ .+++++|+++|++++++++ . +.+..++ +|+.+. . +|.|.+.+.
T Consensus 2 ~~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~-------aD~~~~i~p~~~~~~y~d~~~i~~~a~ 74 (467)
T PRK12833 2 PSRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARM-------ADEAVHIGPSHAAKSYLNPAAILAAAR 74 (467)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHh-------CCEEEecCCCCccccccCHHHHHHHHH
Confidence 344567776543 4888999999999998765 3 3455556 666542 2 677877776
Q ss_pred --cCCeEEeccc--cCCHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHh
Q 042131 75 --ACGVLTVEIE--HVDVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQF 147 (201)
Q Consensus 75 --~~d~i~~~~~--~i~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~ 147 (201)
.+|++..... .-...+++.+++.|+ .+++++++++++.||..++++++++|||+|++. .+++.+++.++++++
T Consensus 75 ~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~i 154 (467)
T PRK12833 75 QCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARI 154 (467)
T ss_pred HhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHh
Confidence 6677754322 112356677888888 479999999999999999999999999999875 789999999999999
Q ss_pred CCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCC-CceeeC
Q 042131 148 GYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 148 ~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~-G~e~sv 201 (201)
|||+||||..|| ||+|++++++.+||.++++... ...+.++||+||+ |.+++|
T Consensus 155 gyPvvvKp~~gg-gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v 214 (467)
T PRK12833 155 GYPLMIKAAAGG-GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEV 214 (467)
T ss_pred CCCEEEEECCCC-CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEE
Confidence 999999999987 9999999999999999886431 1234599999998 588775
No 10
>PRK08462 biotin carboxylase; Validated
Probab=99.92 E-value=3.1e-24 Score=184.04 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=140.4
Q ss_pred Cchhhhhcc----cccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCcccc-------CCCCHhhhh------c
Q 042131 16 SPTIHCRRG----RRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEVH-------NFELPVAVV------A 75 (201)
Q Consensus 16 ~~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~~-------~~~d~~~l~------~ 75 (201)
..+|++.++ ..++++|+++|++|+++++ .+. +..+. +|+.+.. +|.|.+.++ .
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~-------ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~ 76 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKY-------ADAKICIGGAKSSESYLNIPAIISAAEIFE 76 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhh-------CCEEEEeCCCchhcccCCHHHHHHHHHHcC
Confidence 456666533 3788999999999999977 554 55566 7776544 677877776 7
Q ss_pred CCeEEeccccCC--HHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCC
Q 042131 76 CGVLTVEIEHVD--VAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYP 150 (201)
Q Consensus 76 ~d~i~~~~~~i~--~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P 150 (201)
+|++........ ..+.+.++..|++ +++++++++++.||..++++|+++|+|+|++. .+++.+++..++++++||
T Consensus 77 ~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~P 156 (445)
T PRK08462 77 ADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYP 156 (445)
T ss_pred CCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCC
Confidence 788775544322 4556778899984 68999999999999999999999999998854 678999999999999999
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCC-ceeeC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G-~e~sv 201 (201)
+||||.+|+ ||+|+++++|.+||..++.... ...+.+++|+||+| .|++|
T Consensus 157 vvvKP~~g~-gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v 213 (445)
T PRK08462 157 VILKAAAGG-GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEV 213 (445)
T ss_pred EEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEE
Confidence 999999986 8999999999999998885421 12345999999986 46653
No 11
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.92 E-value=3.4e-24 Score=184.04 Aligned_cols=177 Identities=21% Similarity=0.281 Sum_probs=138.2
Q ss_pred chhhhhcc----cccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccc-------cCCCCHhhhh------cC
Q 042131 17 PTIHCRRG----RRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEV-------HNFELPVAVV------AC 76 (201)
Q Consensus 17 ~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~ 76 (201)
++|+++++ .+++++|+++|+++++++. .+. +..++ +|..+. .+|.|.++++ .+
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~-------ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~i 75 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQL-------ADEAVCIGPAPSKKSYLNIPAIISAAEITGA 75 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhH-------CCEEEEeCCCCcccccCCHHHHHHHHHHhCC
Confidence 45666533 5888999999999999977 444 33456 666543 2455666655 67
Q ss_pred CeEEeccc--cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCc--cccCCHHHHHHHHHHhCCCE
Q 042131 77 GVLTVEIE--HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEF--MEVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 77 d~i~~~~~--~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~P~ 151 (201)
|++..... .-...+...+++.|++ ++++++++.++.||..++++|+++|||+|++ ..+++.+++.+++++++||+
T Consensus 76 d~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~Pv 155 (451)
T PRK08591 76 DAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPV 155 (451)
T ss_pred CEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCE
Confidence 88764332 1223466788899985 6899999999999999999999999999886 47889999999999999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
||||..|+ ||+|+++++|.+||.++++.... ....+++||||+| .|++|
T Consensus 156 vvKP~~g~-gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v 211 (451)
T PRK08591 156 IIKATAGG-GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEI 211 (451)
T ss_pred EEEECCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEE
Confidence 99999986 89999999999999999876421 2345999999997 46763
No 12
>PRK07206 hypothetical protein; Provisional
Probab=99.91 E-value=7.6e-24 Score=180.14 Aligned_cols=172 Identities=14% Similarity=0.136 Sum_probs=129.9
Q ss_pred cccccccccccCCCeEEEECC-CCCcc---cccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccCCHHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAA---RGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHVDVAIME 92 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~---~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i~~~~~~ 92 (201)
+|..++++++++||++++++. .+.+. ..+. .++........+.+.+. ..|.+....+. ....++
T Consensus 13 ~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~~e~-~~~~~a 86 (416)
T PRK07206 13 SGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFD-----TSDFIEVIINGDIDDLVEFLRKLGPEAIIAGAES-GVELAD 86 (416)
T ss_pred hHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccC-----cccchhhhcCCCHHHHHHHHHHcCCCEEEECCCc-cHHHHH
Confidence 356888999999999999987 43321 1110 02222222334555544 66766654433 233455
Q ss_pred HHHH-CCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCC---CEEEeecCCCCCCCCeEEc
Q 042131 93 KLEQ-QGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGY---PLMVKSKSLAYDGRGNAVA 168 (201)
Q Consensus 93 ~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~---P~VvKp~~g~~~g~gv~~~ 168 (201)
.+.+ .|++.+++++++..++||..|+++|+++|+|+|+++.+++.+++..++++++| |+||||.+|+ ||+||+++
T Consensus 87 ~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~-gs~gv~~v 165 (416)
T PRK07206 87 RLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESA-GSDGVFIC 165 (416)
T ss_pred HHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCC-CCCCEEEe
Confidence 5554 44555889999999999999999999999999999999999999999999888 9999999975 89999999
Q ss_pred CCHHHHHHHHHHhcC-------CCCceEEeecCCCceeeC
Q 042131 169 KSEEELSSAITALGG-------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 169 ~~~~el~~~~~~~~~-------~~~~~lvEe~i~G~e~sv 201 (201)
+|.+|+..+++++.. ....+++||||+|+||||
T Consensus 166 ~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E~sv 205 (416)
T PRK07206 166 PAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTEYVV 205 (416)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEEEEE
Confidence 999999999987642 134699999999999986
No 13
>PRK05586 biotin carboxylase; Validated
Probab=99.91 E-value=4.4e-24 Score=183.13 Aligned_cols=177 Identities=19% Similarity=0.217 Sum_probs=134.8
Q ss_pred chhhhhc----ccccccccccCCCeEEEECC---CCCcccccCCCCCCCCCCcccc-C------CCCHhhhh------cC
Q 042131 17 PTIHCRR----GRRFPVDRPLKDSRLWELDS---GAIAARGISPPPLLDSARPEVH-N------FELPVAVV------AC 76 (201)
Q Consensus 17 ~~i~~~~----g~~l~~aa~~~G~~v~~~~~---~~~~~~~~~~~~~~~a~~~~~~-~------~~d~~~l~------~~ 76 (201)
.+|++++ +.+++++|+++|++++.+.. .+++..++ +|+.+.. . |.|.+.++ .+
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~-------aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~ 75 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQL-------ADEAVCIGPASSKDSYLNIQNIISATVLTGA 75 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhh-------CCEEEEeCCCChhhcccCHHHHHHHHHHcCC
Confidence 3556553 46899999999999877755 24455566 6765432 2 33445444 77
Q ss_pred CeEEecc--ccCCHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCc--cccCCHHHHHHHHHHhCCCE
Q 042131 77 GVLTVEI--EHVDVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEF--MEVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 77 d~i~~~~--~~i~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~P~ 151 (201)
|++.... ..-...+...++..|+ .++++++++.++.||..++++++++|+|+|++ ..+++.+++.+++++++||+
T Consensus 76 d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPv 155 (447)
T PRK05586 76 QAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPV 155 (447)
T ss_pred CEEEcCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCE
Confidence 8876322 1111355566778888 47999999999999999999999999999987 46789999998899999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
||||++|+ ||+|++++++.+|+.++++.... ..+.+++|+||+| .|++|
T Consensus 156 vvKP~~gg-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v 211 (447)
T PRK05586 156 MVKASAGG-GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEF 211 (447)
T ss_pred EEEECCCC-CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEE
Confidence 99999987 99999999999999998875321 1345999999998 57654
No 14
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.91 E-value=1.9e-23 Score=180.71 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=132.5
Q ss_pred cccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccc-------cCCCCHhhhh------cCCeEEeccccC--
Q 042131 25 RRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEV-------HNFELPVAVV------ACGVLTVEIEHV-- 86 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~d~i~~~~~~i-- 86 (201)
.+++++++++|++++.+.+ .+. +..++ +|+.+. .+|.|.+.++ .+|++.......
T Consensus 15 ~~iiraar~lGi~~V~v~s~~d~~a~~~~~-------AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE 87 (499)
T PRK08654 15 IRVMRACRELGIKTVAVYSEADKNALFVKY-------ADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAE 87 (499)
T ss_pred HHHHHHHHHcCCeEEEEeccccccccchhh-------CCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCcccc
Confidence 3778899999999888766 443 33345 666543 3677777766 667776433222
Q ss_pred CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc--cCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 87 DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME--VNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 87 ~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
...+++.+++.|++ +++++++++.+.||..++++++++|+|+|++.. +++.+++.++++++|||+||||..|| ||+
T Consensus 88 ~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~~Gg-GG~ 166 (499)
T PRK08654 88 NPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGG-GGI 166 (499)
T ss_pred CHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeCCCC-CCC
Confidence 24567888889984 689999999999999999999999999988764 78999999999999999999999987 999
Q ss_pred CeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceee
Q 042131 164 GNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVN 200 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~s 200 (201)
|++++++.+||.++++.... ..+.+++|+||+| .+++
T Consensus 167 Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ie 210 (499)
T PRK08654 167 GMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIE 210 (499)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEE
Confidence 99999999999998876421 2345999999997 4554
No 15
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.91 E-value=1.2e-23 Score=180.63 Aligned_cols=176 Identities=18% Similarity=0.242 Sum_probs=135.7
Q ss_pred chhhhhc----ccccccccccCCCeEEEECC-CCCcc--cccCCCCCCCCCCccc-------cCCCCHhhhh------cC
Q 042131 17 PTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAA--RGISPPPLLDSARPEV-------HNFELPVAVV------AC 76 (201)
Q Consensus 17 ~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~--~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~ 76 (201)
++|++++ +.+++++|+++|++++++++ .+.+. ... +|+.+. .++.|.+.++ ..
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~-------ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~i 75 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKM-------ADEAYLIGGPRVQESYLNLEKIIEIAKKTGA 75 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhh-------CCEEEEcCCCCccccccCHHHHHHHHHHhCC
Confidence 4556553 46889999999999999987 54433 334 555443 3666766665 56
Q ss_pred CeEEeccccC--CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCc--cccCCHHHHHHHHHHhCCCE
Q 042131 77 GVLTVEIEHV--DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEF--MEVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 77 d~i~~~~~~i--~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~P~ 151 (201)
|++....... ...++..++..|++ ++++.+++++++||..++++|+++|||+|++ ..+++.+++.+++++++||+
T Consensus 76 d~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~ 155 (450)
T PRK06111 76 EAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPV 155 (450)
T ss_pred CEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCE
Confidence 7675432211 13466788888985 5899999999999999999999999999986 56688999988899999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCCc-eee
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAPFV-KVN 200 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~-e~s 200 (201)
||||.+|+ ||+||+++++.+|+..+++... .....+++||||+|. |++
T Consensus 156 VvKP~~g~-gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~ 210 (450)
T PRK06111 156 MLKASAGG-GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIE 210 (450)
T ss_pred EEEeCCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEE
Confidence 99999986 8999999999999999887632 123459999999985 444
No 16
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.90 E-value=2.3e-23 Score=191.24 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=132.6
Q ss_pred cccccccccccCCCeEEEECC-CCC-cccc-cCCCCCCCCCCccccCCCCHhhhh----c---CCeEEeccccCCHHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAI-AARG-ISPPPLLDSARPEVHNFELPVAVV----A---CGVLTVEIEHVDVAIME 92 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~-~~~~-~~~~~~~~a~~~~~~~~~d~~~l~----~---~d~i~~~~~~i~~~~~~ 92 (201)
+|++++++|+++||++++++. ... +... . ++..+..++.|.+++. . .+.+....+ .....+.
T Consensus 15 ~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~-------~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se-~~v~~aa 86 (887)
T PRK02186 15 TGELLLRKALLRGFTPYFLTANRGKYPFLDAI-------RVVTISADTSDPDRIHRFVSSLDGVAGIMSSSE-YFIEVAS 86 (887)
T ss_pred cHHHHHHHHHHcCCEEEEEeCCchhhchhhhc-------ceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCch-hhHHHHH
Confidence 356889999999999999986 332 3222 2 3455667888887775 2 333332222 2233333
Q ss_pred -HHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCH
Q 042131 93 -KLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSE 171 (201)
Q Consensus 93 -~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~ 171 (201)
..+..|++ +++++++.+++||..|+++|+++|||+|++..+++.+++.++.++++||+||||.+|+ ||+||++++|.
T Consensus 87 ~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~~PvVVKP~~g~-gS~GV~~v~~~ 164 (887)
T PRK02186 87 EVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGS-GSVGVRLCASV 164 (887)
T ss_pred HHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCCeEEECCH
Confidence 44556664 7899999999999999999999999999999999999999988999999999999975 99999999999
Q ss_pred HHHHHHHHHhcC-CCCceEEeecCCCceeeC
Q 042131 172 EELSSAITALGG-FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 172 ~el~~~~~~~~~-~~~~~lvEe~i~G~e~sv 201 (201)
+|+.++++.+.. ....+++||||+|+||||
T Consensus 165 ~el~~a~~~~~~~~~~~~lvEEfI~G~E~sV 195 (887)
T PRK02186 165 AEAAAHCAALRRAGTRAALVQAYVEGDEYSV 195 (887)
T ss_pred HHHHHHHHHHHhcCCCcEEEeecccCCcEEE
Confidence 999999887642 245699999999999986
No 17
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.90 E-value=4.6e-23 Score=177.99 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=132.3
Q ss_pred chhhhhcc----cccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccc------cCCCCHhhhh------cCC
Q 042131 17 PTIHCRRG----RRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEV------HNFELPVAVV------ACG 77 (201)
Q Consensus 17 ~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~------~~~~d~~~l~------~~d 77 (201)
++|++.++ .+++++++++|++++.++. ++. +..++ +|+.+. .+|.|.+.++ .+|
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~-------AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iD 75 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKI-------ADEAYRIGTDPIKGYLDVKRIVEIAKACGAD 75 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhh-------cCEEEEcCCCchhcccCHHHHHHHHHHhCCC
Confidence 35555433 4888999999999988877 544 33345 565443 3367777765 667
Q ss_pred eEEeccccC--CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCc-ccc--CCHHHHHHHHHHhCCCE
Q 042131 78 VLTVEIEHV--DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEF-MEV--NDLESARRAGKQFGYPL 151 (201)
Q Consensus 78 ~i~~~~~~i--~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~~~--~~~~~~~~~~~~~~~P~ 151 (201)
.+....... ...++..+++.|++ +++++++++.+.||..++++++++|||+|++ ... .+.+++.++++++|||+
T Consensus 76 aI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPv 155 (478)
T PRK08463 76 AIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPV 155 (478)
T ss_pred EEEECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCE
Confidence 776433222 23567888999984 5899999999999999999999999999774 432 57888888999999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCCc
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAPFV 197 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~ 197 (201)
|+||..|+ ||+|++++++.+|+..+++... ...+.+++|+||+|.
T Consensus 156 vvKP~~gg-Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~ 206 (478)
T PRK08463 156 ILKASGGG-GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP 206 (478)
T ss_pred EEEeCCCC-CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 99999986 8999999999999999887421 123469999999874
No 18
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.90 E-value=2.9e-23 Score=176.93 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=132.9
Q ss_pred ccccccccccCCCeEEEECCCCCccc-ccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecccc-CCHHHHHHHH
Q 042131 24 GRRFPVDRPLKDSRLWELDSGAIAAR-GISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEH-VDVAIMEKLE 95 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~-i~~~~~~~l~ 95 (201)
+++++++++++|+.+.++..+..+.. ... ....+..++.|.+.+. .+|.+....+. +....++.++
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~ 85 (423)
T TIGR00877 12 EHALAWKLAQSPLVKYVYVAPGNAGTARLA------KNKNVAISITDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALE 85 (423)
T ss_pred HHHHHHHHHhCCCccEEEEECCCHHHhhhc------ccccccCCCCCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHH
Confidence 46899999999977655544222222 220 2334446778877776 55655433322 1234567888
Q ss_pred HCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCCCCCCCeEEcCCHHH
Q 042131 96 QQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLAYDGRGNAVAKSEEE 173 (201)
Q Consensus 96 ~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~~~g~gv~~~~~~~e 173 (201)
++|++ ++++.+++++++||..++++|+++|||+|++..+++.+++.+++++++|| +|+||..| +||+||+++++.+|
T Consensus 86 ~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g~P~~VvKp~~~-~gg~Gv~~v~~~~e 164 (423)
T TIGR00877 86 EAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAPAIVVKADGL-AAGKGVIVAKTNEE 164 (423)
T ss_pred HCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCeEEEEECCC-CCCCCEEEECCHHH
Confidence 89985 58999999999999999999999999999999999999999999999999 99999986 49999999999999
Q ss_pred HHHHHHHhcC-----CCCceEEeecCCCceeeC
Q 042131 174 LSSAITALGG-----FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 174 l~~~~~~~~~-----~~~~~lvEe~i~G~e~sv 201 (201)
+..++..+.. ....+++||||+|.||||
T Consensus 165 l~~~~~~~~~~~~g~~~~~~lvEe~i~G~E~sv 197 (423)
T TIGR00877 165 AIKAVEEILEQKFGDAGERVVIEEFLDGEEVSL 197 (423)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEECccCceEEE
Confidence 9998877532 134699999999999986
No 19
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.90 E-value=9.1e-23 Score=175.95 Aligned_cols=172 Identities=22% Similarity=0.253 Sum_probs=134.4
Q ss_pred hhhhhc----ccccccccccCCCeEEEECC-CCCcc--cccCCCCCCCCCCccc------cCCCCHhhhh------cCCe
Q 042131 18 TIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAA--RGISPPPLLDSARPEV------HNFELPVAVV------ACGV 78 (201)
Q Consensus 18 ~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~--~~~~~~~~~~a~~~~~------~~~~d~~~l~------~~d~ 78 (201)
+|++.+ +.+++++++++|++++++++ .+.+. .+. +|+.+. .+|.|.+.++ .+|+
T Consensus 4 kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~-------aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~ 76 (472)
T PRK07178 4 KILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKR-------ADEAYSIGADPLAGYLNPRRLVNLAVETGCDA 76 (472)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhh-------CCEEEEcCCCchhhhcCHHHHHHHHHHHCCCE
Confidence 555542 34889999999999999988 55543 334 555432 3477776665 6888
Q ss_pred EEecccc--CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc--cCCHHHHHHHHHHhCCCEEE
Q 042131 79 LTVEIEH--VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME--VNDLESARRAGKQFGYPLMV 153 (201)
Q Consensus 79 i~~~~~~--i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P~Vv 153 (201)
+...... -...++..+++.|++ +++++++++.+.||..++++|+++|+|+|++.. +++.+++.++++++|||+||
T Consensus 77 I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvv 156 (472)
T PRK07178 77 LHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVML 156 (472)
T ss_pred EEeCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEE
Confidence 8744322 224566788889984 689999999999999999999999999988753 78999999899999999999
Q ss_pred eecCCCCCCCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCCc
Q 042131 154 KSKSLAYDGRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAPFV 197 (201)
Q Consensus 154 Kp~~g~~~g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~ 197 (201)
||..|+ ||+|++++++.+||.++++.+. .....+++|+||+|.
T Consensus 157 Kp~~gg-Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~ 205 (472)
T PRK07178 157 KATSGG-GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP 205 (472)
T ss_pred EeCCCC-CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 999987 9999999999999999886531 123459999999664
No 20
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=2.1e-22 Score=171.51 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=128.4
Q ss_pred ccccccccC-CCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccCC-HHHHHHHHHC
Q 042131 26 RFPVDRPLK-DSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHVD-VAIMEKLEQQ 97 (201)
Q Consensus 26 ~l~~aa~~~-G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i~-~~~~~~l~~~ 97 (201)
.+++++++. |+.++.+++.+ +..... ++ ++..+..|.+.+. ..|++....+... ...++.+++.
T Consensus 14 ~l~~~l~~~~~~~~i~~~~~n-~g~~~~------~~-~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~ 85 (420)
T PRK00885 14 ALAWKLAQSPLVEKVYVAPGN-AGTALL------AE-NVVIDVTDIEALVAFAKEEGIDLTVVGPEAPLVAGIVDAFRAA 85 (420)
T ss_pred HHHHHHHhCCCCCEEEEeCCC-HHHHhh------cc-ccCCCCCCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHC
Confidence 366777775 55566655422 222220 22 3345667777765 5677665444321 2445678889
Q ss_pred CCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHH
Q 042131 98 GVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSS 176 (201)
Q Consensus 98 g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~ 176 (201)
|++ +++++++++++.||..++++|+++|||+|++..+++.+++.+++++++||+||||..++ ||+||++++|.+|+.+
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKP~~~~-gs~Gv~~v~~~~el~~ 164 (420)
T PRK00885 86 GLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKGAPIVVKADGLA-AGKGVVVAMTLEEAKA 164 (420)
T ss_pred CCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCCcEEEeCCHHHHHH
Confidence 985 47899999999999999999999999999999999999999999999999999999864 9999999999999999
Q ss_pred HHHHhcC------CCCceEEeecCCCceeeC
Q 042131 177 AITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 177 ~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
+++.+.. ....+||||||+|.||||
T Consensus 165 ~~~~~~~~~~~~~~~~~vlvEe~i~G~E~sv 195 (420)
T PRK00885 165 AVDDMLAGNKFGDAGARVVIEEFLDGEEASF 195 (420)
T ss_pred HHHHHhhcccccCCCCeEEEEEccCCcEEEE
Confidence 9987642 235699999999999986
No 21
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.89 E-value=4.5e-22 Score=185.25 Aligned_cols=186 Identities=14% Similarity=0.144 Sum_probs=144.1
Q ss_pred ccCCCCCCCCchhhhhcccc---------------cccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCccccCCC
Q 042131 7 FCSSPCPLPSPTIHCRRGRR---------------FPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPEVHNFE 68 (201)
Q Consensus 7 ~~~~~~~~~~~~i~~~~g~~---------------l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~~~~~~ 68 (201)
++++......++|+++++.. ++++++++||++++++. ++.... .. +|..+..+.
T Consensus 546 ~~~~~~~~~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~-------aD~~y~ep~- 617 (1068)
T PRK12815 546 ESEAEPSSEKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDT-------ADRLYFEPL- 617 (1068)
T ss_pred CCcCccCCCCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCcccccccccc-------CceEEEccC-
Confidence 44543222577888876532 37899999999999998 554322 23 555444333
Q ss_pred CHhhhh------cCCeEEeccccC-CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHH
Q 042131 69 LPVAVV------ACGVLTVEIEHV-DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESA 140 (201)
Q Consensus 69 d~~~l~------~~d~i~~~~~~i-~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~ 140 (201)
+.+.+. ..|.+...+... ...++..+++.|++ ++++++++..+.||..|+++|+++|||+|++..+++.+++
T Consensus 618 ~~e~vl~I~~~e~~dgVI~~~g~~~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~ 697 (1068)
T PRK12815 618 TLEDVLNVAEAENIKGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEA 697 (1068)
T ss_pred CHHHHHHHHhhcCCCEEEEecCcHHHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHHHH
Confidence 234433 667665443332 23456778889984 5889999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 141 RRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 141 ~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.++++++|||+|+||.+++ ||+|++++++.+||.++++......+.+++|+||+|.|++|
T Consensus 698 ~~~~~~igyPvVVKP~~~~-Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G~E~~V 757 (1068)
T PRK12815 698 FAFAKRIGYPVLIRPSYVI-GGQGMAVVYDEPALEAYLAENASQLYPILIDQFIDGKEYEV 757 (1068)
T ss_pred HHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecCceEEE
Confidence 9999999999999999975 99999999999999999988643345599999999999985
No 22
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=2.9e-22 Score=170.50 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=137.5
Q ss_pred chhhhh--ccc--ccccccccCCCeEEEECC-CCCcccccCCCCCCCCC-CccccCCCCHhhhh------cCCeEEeccc
Q 042131 17 PTIHCR--RGR--RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSA-RPEVHNFELPVAVV------ACGVLTVEIE 84 (201)
Q Consensus 17 ~~i~~~--~g~--~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~-~~~~~~~~d~~~l~------~~d~i~~~~~ 84 (201)
.+|+++ +|| .|+.++++.++.+.+++. ++.-.... .. .....+..|.+.+. .+|.+....+
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~-------~~~~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E 77 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDD-------ELLPADSFSILDKSSVQSFLKSNPFDLIVVGPE 77 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhcc-------ccccccCcCcCCHHHHHHHHHHcCCCEEEECCc
Confidence 466666 334 667788889876666665 43321112 11 11234677777766 6788877666
Q ss_pred cCCH-HHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 85 HVDV-AIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 85 ~i~~-~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
.... .+++.+++.|++ .+++..+++++.||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+ ++|
T Consensus 78 ~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~-~~g 156 (426)
T PRK13789 78 DPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGL-AAG 156 (426)
T ss_pred hHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCC
Confidence 6543 455778889985 4789999999999999999999999999999999999999999999999999999986 499
Q ss_pred CCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCceeeC
Q 042131 163 RGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
+||+++++.+|+.++++.+.. ....++|||||+|.||||
T Consensus 157 kGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G~E~Sv 201 (426)
T PRK13789 157 KGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEASI 201 (426)
T ss_pred CcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCCeEEEE
Confidence 999999999999999987531 123699999999999986
No 23
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=6.4e-22 Score=168.79 Aligned_cols=176 Identities=15% Similarity=0.104 Sum_probs=128.5
Q ss_pred hhhhhc--cc--ccccccccCCCeEEEECCCCCcc-cccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccC
Q 042131 18 TIHCRR--GR--RFPVDRPLKDSRLWELDSGAIAA-RGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHV 86 (201)
Q Consensus 18 ~i~~~~--g~--~l~~aa~~~G~~v~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i 86 (201)
+|++++ +| .++.++++.|++++.+...++|. ..+ ++.+...+..|.+.+. ..|.+....+..
T Consensus 4 kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Npg~~~~-------a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~ 76 (435)
T PRK06395 4 KVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIKKL-------SKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPV 76 (435)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCeEEEEECCCChhhhhc-------ccceeecCCCCHHHHHHHHHHhCCCEEEECCChH
Confidence 455552 22 56667999999887774333344 445 4544456677777766 678776555442
Q ss_pred -CHHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCc-cccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 87 -DVAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEF-MEVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 87 -~~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
....++.+++.|+++ +++.++++++.||..++++|+++|||+|++ ..+.+.+++..+..+++||+||||.+++ +|+
T Consensus 77 l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~~PvVVKP~~~s-ggk 155 (435)
T PRK06395 77 LATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVAVKPIGLT-GGK 155 (435)
T ss_pred HHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhCCCEEEEeCCCC-CCC
Confidence 334567788889965 799999999999999999999999999754 4677778888877888999999999975 999
Q ss_pred CeEEcCC----HHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 164 GNAVAKS----EEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 164 gv~~~~~----~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
||+++++ .++...+..++......+||||||+|.||||
T Consensus 156 GV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Sv 197 (435)
T PRK06395 156 GVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSL 197 (435)
T ss_pred CeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEE
Confidence 9999953 3443333333333334699999999999996
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.89 E-value=2.9e-22 Score=165.19 Aligned_cols=164 Identities=19% Similarity=0.195 Sum_probs=128.6
Q ss_pred ccccccccC--CCeEEEECC-CCCcccccCCCCCCCCCCcccc-CCCC---Hhhhh------cCCeEEeccccC---CHH
Q 042131 26 RFPVDRPLK--DSRLWELDS-GAIAARGISPPPLLDSARPEVH-NFEL---PVAVV------ACGVLTVEIEHV---DVA 89 (201)
Q Consensus 26 ~l~~aa~~~--G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~-~~~d---~~~l~------~~d~i~~~~~~i---~~~ 89 (201)
.+++++++. |++|+++|. +..+..+. ++.++.. ...+ .+.+. ..|++....+.- ...
T Consensus 14 ~~~~~l~~~~~g~~vi~~d~~~~~~~~~~-------~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d~~~~~~a~ 86 (326)
T PRK12767 14 QLVKALKKSLLKGRVIGADISELAPALYF-------ADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLIDPELPLLAQ 86 (326)
T ss_pred HHHHHHHHhccCCEEEEECCCCcchhhHh-------ccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCcHHHHHHHH
Confidence 567888888 599999998 77777666 6654433 2333 23333 667665433321 122
Q ss_pred HHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHH--HHHHhCCCEEEeecCCCCCCCCeE
Q 042131 90 IMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARR--AGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 90 ~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~--~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
..+.++..|+ .++++++++.++.||..|+++|+++|+|+|++..+++.+++.+ +.++++||+|+||..|+ +|+|++
T Consensus 87 ~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~-~s~gv~ 165 (326)
T PRK12767 87 NRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGS-ASIGVF 165 (326)
T ss_pred HHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCCCCEEEEeCCCC-CccCeE
Confidence 3456777787 4689999999999999999999999999999999999999887 45678999999999964 899999
Q ss_pred EcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 167 VAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+++|.+|+.++++... .+++||||+|.|+++
T Consensus 166 ~v~~~~el~~~~~~~~----~~lvqeyi~G~e~~v 196 (326)
T PRK12767 166 KVNDKEELEFLLEYVP----NLIIQEFIEGQEYTV 196 (326)
T ss_pred EeCCHHHHHHHHHhCC----CeEEEeccCCceEEE
Confidence 9999999999887653 499999999999985
No 25
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.88 E-value=9e-22 Score=183.57 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=142.1
Q ss_pred ccCCCCCCCCchhhhhcc---------------cccccccccCCCeEEEECC-CCCcc--cccCCCCCCCCCCccccCCC
Q 042131 7 FCSSPCPLPSPTIHCRRG---------------RRFPVDRPLKDSRLWELDS-GAIAA--RGISPPPLLDSARPEVHNFE 68 (201)
Q Consensus 7 ~~~~~~~~~~~~i~~~~g---------------~~l~~aa~~~G~~v~~~~~-~~~~~--~~~~~~~~~~a~~~~~~~~~ 68 (201)
++++. +...++|+++++ ..++++++++||+|++++. ++... ... +|..+..+.
T Consensus 546 ~~~~~-~~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~-------aD~~y~e~~- 616 (1066)
T PRK05294 546 ECESN-PSDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDT-------SDRLYFEPL- 616 (1066)
T ss_pred CCCCc-cCCCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccch-------hhheeecCC-
Confidence 34443 345677887743 2358999999999999998 54432 234 555443332
Q ss_pred CHhhhh------cCCeEEeccc-cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHH
Q 042131 69 LPVAVV------ACGVLTVEIE-HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESA 140 (201)
Q Consensus 69 d~~~l~------~~d~i~~~~~-~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~ 140 (201)
+.+.+. ..|.+...+. ..+..++..+++.|++ +++++++++++.||..|+++|+++|||+|++..+++.+++
T Consensus 617 ~~e~v~~i~~~e~~dgVi~~~g~~~~~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~ 696 (1066)
T PRK05294 617 TLEDVLEIIEKEKPKGVIVQFGGQTPLKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEA 696 (1066)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCchhHHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHH
Confidence 234333 6666553322 2234567788999985 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc--CCCCceEEeecCCCc-eeeC
Q 042131 141 RRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG--GFDRSLYIEKWAPFV-KVNV 201 (201)
Q Consensus 141 ~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~--~~~~~~lvEe~i~G~-e~sv 201 (201)
.+++++++||+||||.+++ ||+|+.+++|.+||..++++.. .....++||+||+|. ||+|
T Consensus 697 ~~~~~~igyPvvVKP~~~~-Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV 759 (1066)
T PRK05294 697 LEVAEEIGYPVLVRPSYVL-GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDV 759 (1066)
T ss_pred HHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEE
Confidence 9999999999999999975 9999999999999999998754 233459999999999 9885
No 26
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.88 E-value=6.6e-22 Score=184.85 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=134.5
Q ss_pred cccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccc-------cCCCCHhhhh------cCCeEEeccccC--CH
Q 042131 25 RRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEV-------HNFELPVAVV------ACGVLTVEIEHV--DV 88 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~d~i~~~~~~i--~~ 88 (201)
.+++++|+++|+++++++. .+.+...+.. +|+.+. .+|.|.++++ .+|.+....... ..
T Consensus 14 ~~iiraak~lGi~~v~v~sd~d~~a~~v~~-----AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG~gflsE~~ 88 (1201)
T TIGR02712 14 VRIIRTLRRMGIRSVAVYSDADAASQHVLD-----ADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENA 88 (1201)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCccchhh-----CCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeCCcccccCH
Confidence 5888999999999998887 5554333311 566543 3677877776 667665432222 24
Q ss_pred HHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 89 AIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 89 ~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
.++..+++.|+ .+++++++++++.||..+|++|+++|||+++ +..+++.+++..++++++||+||||..|+ ||+|++
T Consensus 89 ~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~igyPvVVKP~~gg-GG~GV~ 167 (1201)
T TIGR02712 89 AFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIGYPVMLKSTAGG-GGIGMQ 167 (1201)
T ss_pred HHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcCCeEEEEECCCC-CCCCEE
Confidence 56778899998 4689999999999999999999999999866 66789999999999999999999999987 999999
Q ss_pred EcCCHHHHHHHHHHhcC------CCCceEEeecCC-CceeeC
Q 042131 167 VAKSEEELSSAITALGG------FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~------~~~~~lvEe~i~-G~e~sv 201 (201)
++++.+|+.++++.... ....++|||||+ |.|++|
T Consensus 168 iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV 209 (1201)
T TIGR02712 168 KCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEV 209 (1201)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEE
Confidence 99999999988876421 234599999998 577764
No 27
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.88 E-value=1.2e-21 Score=166.86 Aligned_cols=169 Identities=20% Similarity=0.191 Sum_probs=127.4
Q ss_pred ccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccc--cCCCCHhhhh------cCCeEEeccccCC-HHHHHHHHH
Q 042131 26 RFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEV--HNFELPVAVV------ACGVLTVEIEHVD-VAIMEKLEQ 96 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~d~~~l~------~~d~i~~~~~~i~-~~~~~~l~~ 96 (201)
+|+.++++.....-++..+.++..... +...++ .+..|.+++. .+|.+....+... ..+++.|+.
T Consensus 11 al~~~l~~s~~~~~~~~~pgn~g~~~~------~~~~~vp~~~~~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d~l~~ 84 (434)
T PLN02257 11 ALCYALQRSPSCDAVFCAPGNAGIATS------GDATCVPDLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLADDLVK 84 (434)
T ss_pred HHHHHHHhCCCCCEEEECCCCHHHhhh------ccceeecCCCCCCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHH
Confidence 455556566533233333223443330 222223 4677877775 5566554444322 366788999
Q ss_pred CCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHH
Q 042131 97 QGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELS 175 (201)
Q Consensus 97 ~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~ 175 (201)
.|++ ++++.++++++.||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+ ++|+||+++++.+|+.
T Consensus 85 ~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g~PvVVKp~~~-~~GkGV~iv~~~~el~ 163 (434)
T PLN02257 85 AGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGL-AAGKGVVVAMTLEEAY 163 (434)
T ss_pred CCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEcCCC-CCCCCEEEECCHHHHH
Confidence 9996 5899999999999999999999999999999999999999999999999999999975 5999999999999999
Q ss_pred HHHHHhc------CCCCceEEeecCCCceeeC
Q 042131 176 SAITALG------GFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 176 ~~~~~~~------~~~~~~lvEe~i~G~e~sv 201 (201)
+++..+. .....++|||||+|.|+||
T Consensus 164 ~a~~~~~~~~~fg~~~~~vlIEefi~G~E~Sv 195 (434)
T PLN02257 164 EAVDSMLVKGAFGSAGSEVVVEEFLDGEEASF 195 (434)
T ss_pred HHHHHHHhhhhccCCCCeEEEEECCCCCEEEE
Confidence 9987752 2235699999999999986
No 28
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.88 E-value=9.3e-22 Score=160.83 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=127.9
Q ss_pred CCchhhhhcccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccc---cCCHHHH
Q 042131 15 PSPTIHCRRGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIE---HVDVAIM 91 (201)
Q Consensus 15 ~~~~i~~~~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~---~i~~~~~ 91 (201)
+...+.+.+++.+.++++++|+++.+++..+.....+ . .. ..|++..... .....+.
T Consensus 16 ~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~-------~-------~~------~~D~v~~~~~g~~~~~~~~~ 75 (304)
T PRK01372 16 AEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQL-------K-------EL------GFDRVFNALHGRGGEDGTIQ 75 (304)
T ss_pred CCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHh-------c-------cC------CCCEEEEecCCCCCCccHHH
Confidence 3445566788999999999999999987521111111 0 00 2344332111 1122344
Q ss_pred HHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCC
Q 042131 92 EKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKS 170 (201)
Q Consensus 92 ~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~ 170 (201)
..++..|++ ++++..++.++.||..++++|+++|||+|++..+++.+++...+++++||+|+||..|+ +|+|++++++
T Consensus 76 ~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~~P~ivKP~~g~-~s~Gv~~v~~ 154 (304)
T PRK01372 76 GLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVKPAREG-SSVGVSKVKE 154 (304)
T ss_pred HHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcCCCEEEeeCCCC-CCCCEEEeCC
Confidence 567788885 46789999999999999999999999999999999999888888999999999999976 8999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 171 EEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 171 ~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.+|+.++++........+++|+||+|.||+|
T Consensus 155 ~~el~~~~~~~~~~~~~~lvEe~i~G~E~~v 185 (304)
T PRK01372 155 EDELQAALELAFKYDDEVLVEKYIKGRELTV 185 (304)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcccCCEEEEE
Confidence 9999998877654445699999999999985
No 29
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.88 E-value=1.4e-21 Score=164.24 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=118.0
Q ss_pred CCCccccCCCCHhhhh------cCCeEEeccccCC-HHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCC
Q 042131 59 SARPEVHNFELPVAVV------ACGVLTVEIEHVD-VAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPE 130 (201)
Q Consensus 59 a~~~~~~~~~d~~~l~------~~d~i~~~~~~i~-~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~ 130 (201)
++.+...+..|.+.+. .+|.+....+... ..+.+.+++.|++ ++++.++++++.||..++++|+++|||+|+
T Consensus 5 ~~~~~~~~~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~ 84 (379)
T PRK13790 5 AEVHTEISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTAD 84 (379)
T ss_pred eEEeecCCCCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence 3344456777777765 5666665555532 2456788899984 579999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc--CCCCceEEeecCCCceeeC
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG--GFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~--~~~~~~lvEe~i~G~e~sv 201 (201)
+..+++.+++.+++++++||+||||..++ +|+||++++|.+|+.++++.+. ...+.++|||||+|.||||
T Consensus 85 ~~~~~~~~ea~~~~~~~g~PvVvKp~~~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G~E~sv 156 (379)
T PRK13790 85 YKEVERKKDALTYIENCELPVVVKKDGLA-AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSL 156 (379)
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccCceEEE
Confidence 99999999999989999999999999865 9999999999999999998864 2234699999999999985
No 30
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.87 E-value=1.2e-21 Score=159.62 Aligned_cols=161 Identities=18% Similarity=0.186 Sum_probs=121.8
Q ss_pred CchhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecc---ccCCHHHH
Q 042131 16 SPTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEI---EHVDVAIM 91 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~---~~i~~~~~ 91 (201)
...+.+.+|+.+++++++.||+++.++. .......+ ... ..|++.... ..-...+.
T Consensus 16 e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l-------~~~-------------~~d~vf~~lhG~~ge~~~i~ 75 (296)
T PRK14569 16 EREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKL-------LEL-------------KPDKCFVALHGEDGENGRVS 75 (296)
T ss_pred chHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHh-------hcc-------------CCCEEEEeCCCCCCCChHHH
Confidence 4466777899999999999999998875 21111111 000 334332111 12223455
Q ss_pred HHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCC
Q 042131 92 EKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKS 170 (201)
Q Consensus 92 ~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~ 170 (201)
..++.+|++ ++++.+++.++.||..++++|+++|||+|++..+.+.. ...+.++||+||||..|| +|.||+++++
T Consensus 76 ~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~~P~vVKP~~gg-ss~Gv~~v~~ 151 (296)
T PRK14569 76 ALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEISFPVAVKPSSGG-SSIATFKVKS 151 (296)
T ss_pred HHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhcCCCEEEEeCCCC-CCcCeEEcCC
Confidence 678889995 58899999999999999999999999999988776432 234678999999999986 7899999999
Q ss_pred HHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 171 EEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 171 ~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.+||.++++.+... +.++||+||+|+||+|
T Consensus 152 ~~eL~~a~~~~~~~-~~~lvEefI~G~E~tv 181 (296)
T PRK14569 152 IQELKHAYEEASKY-GEVMIEQWVTGKEITV 181 (296)
T ss_pred HHHHHHHHHHHHhc-CCEEEEcccccEEEEE
Confidence 99999999876532 3599999999999986
No 31
>PLN02735 carbamoyl-phosphate synthase
Probab=99.87 E-value=1.7e-21 Score=181.27 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=139.7
Q ss_pred ccCCCCCCCCchhhhhccc---------------ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCH
Q 042131 7 FCSSPCPLPSPTIHCRRGR---------------RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELP 70 (201)
Q Consensus 7 ~~~~~~~~~~~~i~~~~g~---------------~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~ 70 (201)
+|++. +..+++|+++++- +++++++++||++++++. ++.....+.. +|+.+..+.. .
T Consensus 566 ~~~~~-~~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~-----aD~~y~~pl~-~ 638 (1102)
T PLN02735 566 ECESA-PTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDT-----SDRLYFEPLT-V 638 (1102)
T ss_pred CCCcc-cCCCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCccc-----CCeEEEEeCC-H
Confidence 44443 4567788877432 366899999999999998 6665432211 6665544333 4
Q ss_pred hhhh------cCCeEEecccc-CCHHHH----HHHHH---------CCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCC
Q 042131 71 VAVV------ACGVLTVEIEH-VDVAIM----EKLEQ---------QGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLP 129 (201)
Q Consensus 71 ~~l~------~~d~i~~~~~~-i~~~~~----~~l~~---------~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p 129 (201)
+.+. .+|.+...+.. .+..++ +.+++ .|+ .+++++++++++.||..++++|+++|||+|
T Consensus 639 e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p 718 (1102)
T PLN02735 639 EDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQP 718 (1102)
T ss_pred HHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCC
Confidence 4444 67777643332 111222 22332 256 569999999999999999999999999999
Q ss_pred CccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC--CCCceEEeecCC-CceeeC
Q 042131 130 EFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG--FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~--~~~~~lvEe~i~-G~e~sv 201 (201)
++..+++.+++.++++++|||+||||.+|+ ||+|+++++|.+||..+++.... ..+.++||+||+ |.|++|
T Consensus 719 ~~~~v~s~eea~~~a~~iGyPvvVKP~~g~-gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V 792 (1102)
T PLN02735 719 KGGIARSEADALAIAKRIGYPVVVRPSYVL-GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDV 792 (1102)
T ss_pred CeeEeCCHHHHHHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEE
Confidence 999999999999999999999999999975 99999999999999999987642 234599999997 789885
No 32
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.87 E-value=1.6e-21 Score=164.78 Aligned_cols=166 Identities=23% Similarity=0.282 Sum_probs=130.8
Q ss_pred ccccccccCCCeEEEECC-CCCcc--cccCCCCCCCCCCccccC-------CCCHhhhh------cCCeEEeccc--cCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAA--RGISPPPLLDSARPEVHN-------FELPVAVV------ACGVLTVEIE--HVD 87 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~--~~~~~~~~~~a~~~~~~~-------~~d~~~l~------~~d~i~~~~~--~i~ 87 (201)
...++++++|++++.+.+ .+... ..+ +|+.+... |.+.+.++ .+|.+..... --.
T Consensus 16 ri~ra~~~lGi~tvav~s~~d~~~~~~~~-------adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygflsen 88 (449)
T COG0439 16 RIIRACRELGIETVAVYSEADADALHVAL-------ADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSEN 88 (449)
T ss_pred HHHHHHHHhCCeEEEEeccccccchhhhh-------CceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchhhhCC
Confidence 667899999999998887 55543 334 55544322 55555555 6666643222 334
Q ss_pred HHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc--cCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 88 VAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME--VNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 88 ~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
..+.+.+++.|+ .++|+.++++.+.||..+|+++++.|+|++++.. +.+.+++...++++||||||||..|| ||+|
T Consensus 89 ~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~Gg-Gg~G 167 (449)
T COG0439 89 AAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGG-GGRG 167 (449)
T ss_pred HHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCC-Cccc
Confidence 577788899998 6799999999999999999999999999998762 56778999999999999999999987 9999
Q ss_pred eEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCcee
Q 042131 165 NAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVKV 199 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~ 199 (201)
+++|++.+||.+++....+ .+..+++|+||++.+.
T Consensus 168 ~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rh 208 (449)
T COG0439 168 MRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRH 208 (449)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCce
Confidence 9999999999999976431 2344999999999865
No 33
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.87 E-value=2.6e-21 Score=180.05 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=138.2
Q ss_pred CCchhhhhccc---------------ccccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCccccCCCCHhhhh--
Q 042131 15 PSPTIHCRRGR---------------RFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPEVHNFELPVAVV-- 74 (201)
Q Consensus 15 ~~~~i~~~~g~---------------~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~~~~~~d~~~l~-- 74 (201)
..++|+++++. .++++++++||+|++++. ++.... .. +|..+..+ .+.+.+.
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~-------~D~ly~ep-~~~e~vl~i 624 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDT-------SDRLYFEP-LTFEDVMNI 624 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccc-------cceEEEec-CCHHHHHHH
Confidence 45678877543 458999999999999988 544322 23 44433322 2234333
Q ss_pred ----cCCeEEecccc-CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhC
Q 042131 75 ----ACGVLTVEIEH-VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFG 148 (201)
Q Consensus 75 ----~~d~i~~~~~~-i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~ 148 (201)
.+|.+...... ....++..+++.|++ ++++++++..+.||..|+++|+++|||+|++..+++.+++.+++++++
T Consensus 625 ~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~ig 704 (1050)
T TIGR01369 625 IELEKPEGVIVQFGGQTPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIG 704 (1050)
T ss_pred HhhcCCCEEEEccCcHhHHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcC
Confidence 56766543332 233556778888985 588999999999999999999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc--CCCCceEEeecCC-CceeeC
Q 042131 149 YPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG--GFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 149 ~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~--~~~~~~lvEe~i~-G~e~sv 201 (201)
||+||||.+++ ||+|+.+++|.+||..++++.. ...+.+++|+||+ |.||+|
T Consensus 705 yPvIVKP~~~~-Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~V 759 (1050)
T TIGR01369 705 YPVLVRPSYVL-GGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDV 759 (1050)
T ss_pred CCEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEE
Confidence 99999999975 9999999999999999998753 2334599999999 899985
No 34
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.87 E-value=2.2e-21 Score=180.58 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=133.2
Q ss_pred cccccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecccc-CCH----
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEH-VDV---- 88 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~-i~~---- 88 (201)
+|..++++++++||+|+++++ ++. ....+ +|..+..+. +.+.+. ..|.+...... ...
T Consensus 28 sg~q~~kalke~G~~vi~v~~np~~~~~~~~~-------aD~~y~~p~-~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~ 99 (1050)
T TIGR01369 28 SGSQACKALKEEGYRVILVNSNPATIMTDPEM-------ADKVYIEPL-TPEAVEKIIEKERPDAILPTFGGQTALNLAV 99 (1050)
T ss_pred hHHHHHHHHHHcCCEEEEEecchhhccCChhc-------CCEEEECCC-CHHHHHHHHHHhCCCEEEECCCChhHHHHHh
Confidence 456789999999999999998 533 22345 566555544 344443 67877643322 111
Q ss_pred --HHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 89 --AIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 89 --~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
.....++..|+ .+++++++++++.||..++++|+++|+|+|++..+++.+++.++++++|||+||||..| +||+|+
T Consensus 100 ~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igyPvIVKP~~g-~gg~Gv 178 (1050)
T TIGR01369 100 ELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGYPVIVRPAFT-LGGTGG 178 (1050)
T ss_pred hHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCCCeEEECCCC-CCCCCe
Confidence 12346788898 45899999999999999999999999999999999999999999999999999999986 599999
Q ss_pred EEcCCHHHHHHHHHHhcCC--CCceEEeecCCC-ceeeC
Q 042131 166 AVAKSEEELSSAITALGGF--DRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~e~sv 201 (201)
++++|.+|+.+++...... .+++||||||+| .|++|
T Consensus 179 ~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev 217 (1050)
T TIGR01369 179 GIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEY 217 (1050)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEE
Confidence 9999999999987765432 256999999999 57764
No 35
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.86 E-value=4.2e-21 Score=156.85 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=126.7
Q ss_pred hhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccc----cCCHHHHHH
Q 042131 19 IHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIE----HVDVAIMEK 93 (201)
Q Consensus 19 i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~----~i~~~~~~~ 93 (201)
+.+++|++++++++++||++..++. .... ... +. ........ ..+...|++..... ......+..
T Consensus 10 ~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~--~~~--~~--~~~~~~~~----~~~~~~d~v~~~~~~~~~~~~~~~~~~ 79 (300)
T PRK10446 10 GTLYSCKRLREAAIQRGHLVEILDPLSCYM--NIN--PA--ASSIHYKG----RKLPHFDAVIPRIGTAITFYGTAALRQ 79 (300)
T ss_pred CcchhHHHHHHHHHHcCCeEEEEehHHceE--ecC--CC--cccEEECC----cccCCCCEEEEcCCCchhhHHHHHHHH
Confidence 4557899999999999999999987 2210 110 00 00000000 01114455432211 111334567
Q ss_pred HHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh-CCCEEEeecCCCCCCCCeEEcCCHH
Q 042131 94 LEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF-GYPLMVKSKSLAYDGRGNAVAKSEE 172 (201)
Q Consensus 94 l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~P~VvKp~~g~~~g~gv~~~~~~~ 172 (201)
++..|..+++++.++.++.||..++++|+++|||+|++..+.+.+++.++++++ +||+|+||..|+ +|+||+++++.+
T Consensus 80 le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~~P~VvKP~~g~-~g~GV~~v~~~~ 158 (300)
T PRK10446 80 FEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGT-QGIGVVLAETRQ 158 (300)
T ss_pred HHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCCCCEEEEECCCC-CcccEEEEcCHH
Confidence 888898789999999999999999999999999999999988888888888877 799999999975 999999999999
Q ss_pred HHHHHHHHhcCCCCceEEeecC---CCceeeC
Q 042131 173 ELSSAITALGGFDRSLYIEKWA---PFVKVNV 201 (201)
Q Consensus 173 el~~~~~~~~~~~~~~lvEe~i---~G~e~sv 201 (201)
++..+++.+......+++|||| .|.++.|
T Consensus 159 ~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv 190 (300)
T PRK10446 159 AAESVIDAFRGLNAHILVQEYIKEAQGCDIRC 190 (300)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeccCCCceEEE
Confidence 9998888765434559999999 5777754
No 36
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.86 E-value=6.3e-21 Score=177.53 Aligned_cols=166 Identities=19% Similarity=0.258 Sum_probs=131.1
Q ss_pred cccccccccCCCeEEEECC-CC--CcccccCCCCCCCCCCccc--------cCCCCHhhhh------cCCeEEecc--cc
Q 042131 25 RRFPVDRPLKDSRLWELDS-GA--IAARGISPPPLLDSARPEV--------HNFELPVAVV------ACGVLTVEI--EH 85 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~--~~~~~~~~~~~~~a~~~~~--------~~~~d~~~l~------~~d~i~~~~--~~ 85 (201)
.+++++|+++|++++++.+ .+ ++..+. +|+.+. .+|.|.+.++ .+|.+.... ..
T Consensus 18 vri~raa~elGi~~Vav~s~~D~~a~~~~~-------ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGfls 90 (1146)
T PRK12999 18 IRIFRAATELGIRTVAIYSEEDKLSLHRFK-------ADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLS 90 (1146)
T ss_pred HHHHHHHHHcCCEEEEEECCCCcCCchHHh-------CCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccc
Confidence 4788999999999998766 43 455556 665442 3566777666 667665332 21
Q ss_pred CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 86 VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 86 i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
-...+++.+++.|+. +++++++++.+.||..++++++++|+|+|++. .+.+.+++.++++++|||+|+||..|+ ||
T Consensus 91 E~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg-GG 169 (1146)
T PRK12999 91 ENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGG-GG 169 (1146)
T ss_pred cCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCC-CC
Confidence 124567778889984 68999999999999999999999999997755 589999999999999999999999987 99
Q ss_pred CCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCce
Q 042131 163 RGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVK 198 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e 198 (201)
+|++++++.+||.++++.... ..+.+++|+||+|.+
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~ 211 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPR 211 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCe
Confidence 999999999999998876321 134599999999853
No 37
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.86 E-value=5.4e-21 Score=177.42 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=133.1
Q ss_pred ccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccc----------cCCCCHhhhh------cCCeEEeccccC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEV----------HNFELPVAVV------ACGVLTVEIEHV 86 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~----------~~~~d~~~l~------~~d~i~~~~~~i 86 (201)
+++++++++|++++.+++ ++. ...+. +|+.+. .+|.|.+.++ .+|++.......
T Consensus 13 ri~ra~~elGi~tVav~s~~D~~s~~~~~-------ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGfl 85 (1143)
T TIGR01235 13 RVFRAANELGIRTVAIYSEEDKLSLHRQK-------ADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFL 85 (1143)
T ss_pred HHHHHHHHcCCEEEEEECcccccCcchhh-------cCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCcc
Confidence 578899999999999988 554 33344 555432 3567777776 678776433222
Q ss_pred --CHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCC
Q 042131 87 --DVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 87 --~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
...++..+++.|+ .+++++++++.+.||..++++++++|+|+|++. .+.+.+++..+++++|||+||||..|| |
T Consensus 86 sE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~~GG-G 164 (1143)
T TIGR01235 86 SENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGG-G 164 (1143)
T ss_pred ccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEECCCC-C
Confidence 2466778888898 568999999999999999999999999999864 568999999999999999999999987 8
Q ss_pred CCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 162 GRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
|+|++++++.+||.+++..... ..+.+++|+||+| .+++|
T Consensus 165 GrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeV 211 (1143)
T TIGR01235 165 GRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEV 211 (1143)
T ss_pred CCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEE
Confidence 9999999999999998876421 2345999999997 55543
No 38
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=6.7e-21 Score=158.52 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=124.9
Q ss_pred CchhhhhcccccccccccCCCeEEEECC-CCCccc--ccCCCCCCC-----CCCc---ccc--CCCCHhhhh--cCCeEE
Q 042131 16 SPTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLD-----SARP---EVH--NFELPVAVV--ACGVLT 80 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~-----a~~~---~~~--~~~d~~~l~--~~d~i~ 80 (201)
.--|.+.+|+.+++++.+.||++..++. .+..+. .....+... .... +.. +......+. ..|++.
T Consensus 14 E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f 93 (347)
T PRK14572 14 EHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEPADISQLDADIAF 93 (347)
T ss_pred chHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeeccccccccccccccccccccccccccccccccccccccCcCEEE
Confidence 4567788999999999999999987765 321110 000000000 0000 000 000001111 334432
Q ss_pred eccccC---CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccC------CHHHHHHHHHHhCCC
Q 042131 81 VEIEHV---DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN------DLESARRAGKQFGYP 150 (201)
Q Consensus 81 ~~~~~i---~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~------~~~~~~~~~~~~~~P 150 (201)
...... +..+-..|+..|++ ++++..++.++.||..++++|+++|||+|++..+. +.+++....++++||
T Consensus 94 ~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~P 173 (347)
T PRK14572 94 LGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLGFP 173 (347)
T ss_pred EecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhcCCC
Confidence 211111 12344578888995 47889999999999999999999999999998764 333444445678999
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+||||.+|| ++.||+++++.+||..+++.+....+.+||||||+|+||||
T Consensus 174 vvVKP~~gg-sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~G~E~sv 223 (347)
T PRK14572 174 QFLKPVEGG-SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLSGTEVSC 223 (347)
T ss_pred EEEecCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcccEEEEE
Confidence 999999986 77999999999999999988765555699999999999985
No 39
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.86 E-value=3.9e-21 Score=157.83 Aligned_cols=176 Identities=18% Similarity=0.229 Sum_probs=125.6
Q ss_pred CchhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc---CCHHHH
Q 042131 16 SPTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH---VDVAIM 91 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~---i~~~~~ 91 (201)
.-.+.+.+++.++++++++||++++++. .+.... ..+ ....+. .. .......|++..-... -...+.
T Consensus 12 e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~-~~~-----~~~~~~-~~--~~~~~~~D~v~~~~~g~~~~~~~~~ 82 (315)
T TIGR01205 12 EHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWT-YKD-----LPQLIL-EL--GALLEGIDVVFPVLHGRYGEDGTIQ 82 (315)
T ss_pred CeeeeHHHHHHHHHHHhhcCCEEEEEeecCCcccc-ccc-----hHHHHh-hc--cccCCCCCEEEEecCCCCCCCcHHH
Confidence 3345667899999999999999999987 432210 100 000000 00 0011145655422211 123455
Q ss_pred HHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccC-CHHHHH-----HHHHHhCCCEEEeecCCCCCCCC
Q 042131 92 EKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN-DLESAR-----RAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 92 ~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~-----~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
..++..|+++ ++++.++.++.||..++++|+++|||+|++..++ +.++.. .+.+.++||+|+||..|+ +|+|
T Consensus 83 ~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~-~s~G 161 (315)
T TIGR01205 83 GLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG-SSVG 161 (315)
T ss_pred HHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC-CccC
Confidence 6788889854 6789999999999999999999999999999877 543222 334678999999999976 8899
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|++++|.+|+.++++........+++|+||+|.||+|
T Consensus 162 v~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~~v 198 (315)
T TIGR01205 162 VSKVKSEEELQAALDEAFEYDEEVLVEQFIKGRELEV 198 (315)
T ss_pred EEEECCHHHHHHHHHHHHhcCCcEEEEcCCCCEEEEE
Confidence 9999999999999887654445699999999999985
No 40
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.86 E-value=1e-20 Score=162.90 Aligned_cols=171 Identities=14% Similarity=0.133 Sum_probs=126.0
Q ss_pred ccccccccC--CCeEEEECCCCCcccc-cCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccCCH-HHHHHHH
Q 042131 26 RFPVDRPLK--DSRLWELDSGAIAARG-ISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHVDV-AIMEKLE 95 (201)
Q Consensus 26 ~l~~aa~~~--G~~v~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i~~-~~~~~l~ 95 (201)
.|+.++++. |++++++....++... ... ..++..+..+..|.+.+. .+|.+....+.... .+++.++
T Consensus 14 al~~~l~~s~~g~~v~~~~g~~Npg~~~~~~---~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~l~~glad~l~ 90 (486)
T PRK05784 14 ALAEALEKSTKGYKVYALSSYLNPGINSVVK---ATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEPLFAGVADVLR 90 (486)
T ss_pred HHHHHHHhCCCCCEEEEEECCCChhheeecc---cccCceEecCCCCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHH
Confidence 566678887 9999888552233322 200 002334566777777765 67777655555432 5567889
Q ss_pred HCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCC-CccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHH
Q 042131 96 QQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLP-EFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEE 173 (201)
Q Consensus 96 ~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p-~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~e 173 (201)
+.|++ .+++.++++++.||..+|++|+++|||+| ++..+++.+++.++++.. +|+||||..++ +|+||+++++.++
T Consensus 91 ~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~-~PvVVKP~~~a-ggkGV~iv~~~~e 168 (486)
T PRK05784 91 EEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG-GSVAIKPARQA-GGKGVKVIADLQA 168 (486)
T ss_pred hCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc-CCEEEeeCCCC-CCCCEEEECChhH
Confidence 99995 58999999999999999999999999996 688889999998888665 69999999976 9999999999873
Q ss_pred -----HHHHH----HHh-------cCCCCceEEeecCCCceeeC
Q 042131 174 -----LSSAI----TAL-------GGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 174 -----l~~~~----~~~-------~~~~~~~lvEe~i~G~e~sv 201 (201)
+.+++ +++ ......++|||||+|.||||
T Consensus 169 ~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G~E~SV 212 (486)
T PRK05784 169 YLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGVEYTL 212 (486)
T ss_pred hcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCCeEEEE
Confidence 33333 332 12235699999999999986
No 41
>PLN02735 carbamoyl-phosphate synthase
Probab=99.86 E-value=1.1e-20 Score=175.81 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=130.5
Q ss_pred ccccccccCCCeEEEECC-CCCc--ccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecccc-CCHH----HH
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIA--ARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEH-VDVA----IM 91 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~--~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~-i~~~----~~ 91 (201)
.++++++++||+|+++++ +... .... +|+.++.+. +.+.+. ++|.+...... .... +.
T Consensus 48 q~~kaLke~G~~Vi~vd~np~t~~~~~~~-------aD~~yi~p~-~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~ 119 (1102)
T PLN02735 48 QACKALKEEGYEVVLINSNPATIMTDPET-------ADRTYIAPM-TPELVEQVIAKERPDALLPTMGGQTALNLAVALA 119 (1102)
T ss_pred HHHHHHHHcCCEEEEEeCCcccccCChhh-------CcEEEeCCC-CHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHh
Confidence 478999999999999998 4322 1234 566554333 333333 77877653321 1111 11
Q ss_pred --HHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhC-CCEEEeecCCCCCCCCeEE
Q 042131 92 --EKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFG-YPLMVKSKSLAYDGRGNAV 167 (201)
Q Consensus 92 --~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P~VvKp~~g~~~g~gv~~ 167 (201)
..|+.+|+ .+++++++++++.||..++++|+++|+|+|++..+++.+++.++++++| ||+||||..+ .||+|+.+
T Consensus 120 ~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG~yPvVVKP~~~-~GG~Gv~i 198 (1102)
T PLN02735 120 ESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIGEFPLIIRPAFT-LGGTGGGI 198 (1102)
T ss_pred hhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhCCCCEEEEeCCC-CCCCceEE
Confidence 24678898 5689999999999999999999999999999999999999988899998 9999999996 49999999
Q ss_pred cCCHHHHHHHHHHhc--CCCCceEEeecCCC-ceeeC
Q 042131 168 AKSEEELSSAITALG--GFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 168 ~~~~~el~~~~~~~~--~~~~~~lvEe~i~G-~e~sv 201 (201)
++|.+||..++.... ...+++||||||.| .||+|
T Consensus 199 v~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev 235 (1102)
T PLN02735 199 AYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYEL 235 (1102)
T ss_pred ECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEE
Confidence 999999999997753 34567999999999 78875
No 42
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.85 E-value=1.1e-20 Score=156.36 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=127.2
Q ss_pred CchhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccc------cCCC---CHhhh-hcCCeEEeccc
Q 042131 16 SPTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEV------HNFE---LPVAV-VACGVLTVEIE 84 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~------~~~~---d~~~l-~~~d~i~~~~~ 84 (201)
.-.|.+.+|+.+++++++.||+++.++. .+-.+... .. ....+. .++. ..... ...|++.....
T Consensus 16 E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lh 90 (333)
T PRK01966 16 EHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLI---DA--DNMELADDDNDKEDLSLLILPSGGSEEVDVVFPVLH 90 (333)
T ss_pred cchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeec---cc--hhhhcccccccccccchhccccccCccCCEEEEccC
Confidence 3567778999999999999999998876 33111000 00 000000 0000 00000 03455432211
Q ss_pred c---CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHH----HHHHHHHhCCCEEEeec
Q 042131 85 H---VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLES----ARRAGKQFGYPLMVKSK 156 (201)
Q Consensus 85 ~---i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~----~~~~~~~~~~P~VvKp~ 156 (201)
. -+..+...++..|++ ++++..++.++.||..++++|+++|||+|++..+.+.++ +....+.++||+||||.
T Consensus 91 G~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~~P~vVKP~ 170 (333)
T PRK01966 91 GPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLGLPVFVKPA 170 (333)
T ss_pred CCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhcCCCEEEEeC
Confidence 1 122344577888984 588999999999999999999999999999988866544 34456789999999999
Q ss_pred CCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 157 SLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 157 ~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.++ +|.||.++++.+|+.++++......+.++||+||+|+||+|
T Consensus 171 ~~g-sS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~G~E~~v 214 (333)
T PRK01966 171 NLG-SSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIKGREIEC 214 (333)
T ss_pred CCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcCCEEEEE
Confidence 976 88899999999999999988766566799999999999985
No 43
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.85 E-value=1.2e-20 Score=156.84 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=125.7
Q ss_pred CchhhhhcccccccccccCCCeEEEECC-CCCcccccCCCC-CCC-CC--CccccCCCCHh----------hhhcCCeEE
Q 042131 16 SPTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPP-LLD-SA--RPEVHNFELPV----------AVVACGVLT 80 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~-~~~-a~--~~~~~~~~d~~----------~l~~~d~i~ 80 (201)
.--|.+.+|+.++.++.+.||+|+.++. .+-.+......+ ... .+ ........+.. .....|++.
T Consensus 16 E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf 95 (343)
T PRK14568 16 EHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLVLEQGEYETIRLDVVF 95 (343)
T ss_pred chHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccccCccccccccCCEEE
Confidence 3456777899999999999999998876 321110000000 000 00 00000000000 001355543
Q ss_pred eccc---cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeec
Q 042131 81 VEIE---HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSK 156 (201)
Q Consensus 81 ~~~~---~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~ 156 (201)
...- .-+..+-..|+..|++ ++++..++.++.||..++++|+++|||+|++..+++.++.. .+.++||+||||.
T Consensus 96 ~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l~~P~iVKP~ 173 (343)
T PRK14568 96 PVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADERPD--AATLTYPVFVKPA 173 (343)
T ss_pred EcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhcCCCEEEEeC
Confidence 2111 1123444677888984 58999999999999999999999999999999887665432 3578999999999
Q ss_pred CCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 157 SLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 157 ~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.+| +|+||.+++|.+||.++++......+.+|||+||+|+|++|
T Consensus 174 ~~g-sS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G~E~sv 217 (343)
T PRK14568 174 RSG-SSFGVSKVNSADELDYAIESARQYDSKVLIEEAVVGSEVGC 217 (343)
T ss_pred CCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcCCEEEEE
Confidence 986 78999999999999999988765556799999999999975
No 44
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.85 E-value=1.6e-20 Score=175.29 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=130.5
Q ss_pred cccccccccccCCCeEEEECC-CCCc--ccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecccc---CC--H
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIA--ARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEH---VD--V 88 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~--~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~---i~--~ 88 (201)
+|..++++++++|++|+++++ +... ...+ +|..+..+. +.+.+. ..|.+...... .. .
T Consensus 29 sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~-------aD~~y~~p~-~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~ 100 (1066)
T PRK05294 29 SGTQACKALREEGYRVVLVNSNPATIMTDPEM-------ADATYIEPI-TPEFVEKIIEKERPDAILPTMGGQTALNLAV 100 (1066)
T ss_pred hHHHHHHHHHHcCCEEEEEcCCcccccCCccc-------CCEEEECCC-CHHHHHHHHHHHCcCEEEECCCCchhhhhhH
Confidence 345689999999999999998 4322 2234 555554443 234333 67777643322 11 1
Q ss_pred HHH--HHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 89 AIM--EKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 89 ~~~--~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
.+. ..|+..|++ .++++++++.+.||..++++|+++|+|+|++..+++.+++.++++++|||+||||..| +||+|+
T Consensus 101 ~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~PvVVKP~~g-~gg~Gv 179 (1066)
T PRK05294 101 ELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIGYPVIIRPSFT-LGGTGG 179 (1066)
T ss_pred HHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcCCCeEEEcCCC-CCCCCe
Confidence 111 247788884 5899999999999999999999999999999999999999999999999999999985 699999
Q ss_pred EEcCCHHHHHHHHHHhcC--CCCceEEeecCCC-ceeeC
Q 042131 166 AVAKSEEELSSAITALGG--FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~--~~~~~lvEe~i~G-~e~sv 201 (201)
+++++.+||.+++++... ..++++||+||+| .|++|
T Consensus 180 ~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv 218 (1066)
T PRK05294 180 GIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEY 218 (1066)
T ss_pred EEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEE
Confidence 999999999999885432 2356999999999 58764
No 45
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=2.7e-20 Score=151.99 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=119.2
Q ss_pred CchhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc---CCHHHH
Q 042131 16 SPTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH---VDVAIM 91 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~---i~~~~~ 91 (201)
.-.+.+.+++.+++++++.||++..++. .+ ....+ . .+...|++..-... -...+.
T Consensus 13 e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~-~~~~~-------~------------~~~~~D~v~~~~~g~~ge~~~~~ 72 (299)
T PRK14571 13 EREISLRSGERVKKALEKLGYEVTVFDVDED-FLKKV-------D------------QLKSFDVVFNVLHGTFGEDGTLQ 72 (299)
T ss_pred CccchHHHHHHHHHHHHHcCCeEEEEccCch-HHHHh-------h------------hccCCCEEEEeCCCCCCCccHHH
Confidence 4467778999999999999999999876 22 11111 0 00123443211111 123344
Q ss_pred HHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCC
Q 042131 92 EKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKS 170 (201)
Q Consensus 92 ~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~ 170 (201)
..++.+|++ ++++..++.++.||..++++|+ .++|+|++..+.+.. ..+.++||+|+||..|+ +|+||.+++|
T Consensus 73 ~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l~~P~vvKP~~g~-~s~Gv~~v~~ 146 (299)
T PRK14571 73 AILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPLGYPCVVKPRREG-SSIGVFICES 146 (299)
T ss_pred HHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEechh----hhhhcCCCEEEecCCCC-CcCCEEEECC
Confidence 577788985 4788999999999999999998 589999998876532 23568999999999986 8899999999
Q ss_pred HHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 171 EEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 171 ~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.+|+.++++......+.++|||||+|+|++|
T Consensus 147 ~~el~~~~~~~~~~~~~vlVEeyI~G~E~sv 177 (299)
T PRK14571 147 DEEFQHALKEDLPRYGSVIVQEYIPGREMTV 177 (299)
T ss_pred HHHHHHHHHHHHhhCCcEEEEccccceEEEE
Confidence 9999999887543344699999999999986
No 46
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.84 E-value=5.4e-20 Score=171.45 Aligned_cols=170 Identities=16% Similarity=0.152 Sum_probs=129.3
Q ss_pred cccccccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccC-CHHHH-
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHV-DVAIM- 91 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i-~~~~~- 91 (201)
+|..++++++++||+|+++++ +..... .+ ++..+.... +.+.+. ..|.+......- .....
T Consensus 29 sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~-------ad~~y~ep~-~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~ 100 (1068)
T PRK12815 29 SGTQACLALKEEGYQVVLVNPNPATIMTDPAP-------ADTVYFEPL-TVEFVKRIIAREKPDALLATLGGQTALNLAV 100 (1068)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcchhhcCccc-------CCeeEECCC-CHHHHHHHHHHhCcCEEEECCCCchHHHHHH
Confidence 456789999999999999997 432111 23 344333322 233332 677776433211 11111
Q ss_pred -----HHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 92 -----EKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 92 -----~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
..|++.|+. ++++++++.++.||..++++|+++|+|+|++..+++.+++.++++++|||+||||..| +||+|+
T Consensus 101 ~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~igyPvVVKP~~g-~gG~Gv 179 (1068)
T PRK12815 101 KLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIGFPIIVRPAYT-LGGTGG 179 (1068)
T ss_pred HHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcCCCEEEEECcC-CCCCce
Confidence 246788884 5899999999999999999999999999999999999999999999999999999985 599999
Q ss_pred EEcCCHHHHHHHHHHhcC--CCCceEEeecCCC-ceeeC
Q 042131 166 AVAKSEEELSSAITALGG--FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~--~~~~~lvEe~i~G-~e~sv 201 (201)
.+++|.+||.++++.... ..+++|||+||+| .||+|
T Consensus 180 ~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv 218 (1068)
T PRK12815 180 GIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEY 218 (1068)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEE
Confidence 999999999999976543 2357999999999 58875
No 47
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.83 E-value=6.4e-20 Score=151.94 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=115.8
Q ss_pred cccccccccCCCeEEEECC-CCC---cccccCCCCCCCCCCccccC-CCC---Hhh---hhcCCeE-EeccccCCHHHHH
Q 042131 25 RRFPVDRPLKDSRLWELDS-GAI---AARGISPPPLLDSARPEVHN-FEL---PVA---VVACGVL-TVEIEHVDVAIME 92 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~~---~~~~~~~~~~~~a~~~~~~~-~~d---~~~---l~~~d~i-~~~~~~i~~~~~~ 92 (201)
-.+++.|++.|+++++++. .+. +...+ +|+.+..+ +.| .+. +..-+.+ ...-..+..-.++
T Consensus 30 L~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~-------~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs~v~y~~~d 102 (358)
T PRK13278 30 LQILKGAKKEGFRTIAICKKKREVFYKRFPV-------ADEFIIVDDFSDILNEAVQEKLREMNAILIPHGSFVAYLGLE 102 (358)
T ss_pred HHHHHHHHHCCCeEEEEEeCCCccccccccc-------cceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCCcceeecHH
Confidence 3678899999999999998 432 22233 56655443 533 222 2222332 2212222222245
Q ss_pred HHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHH
Q 042131 93 KLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEE 172 (201)
Q Consensus 93 ~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~ 172 (201)
.++..+++++++.+++++..||..++++|+++|||+|++ +++.++ ++||+||||.. ++||+|+++++|.+
T Consensus 103 ~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~~~~~-------i~~PvIVKp~~-g~ggkGv~i~~s~~ 172 (358)
T PRK13278 103 NVEKFKVPMFGNREILRWEADRDKERKLLEEAGIRIPRK--YESPED-------IDRPVIVKLPG-AKGGRGYFIAKSPE 172 (358)
T ss_pred HHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--eCCHHH-------cCCCEEEEeCC-CCCCCCeEEeCCHH
Confidence 555677788889999999999999999999999999996 455543 57999999976 47999999999999
Q ss_pred HHHHHHHHhcC-----CCCceEEeecCCCceeeC
Q 042131 173 ELSSAITALGG-----FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 173 el~~~~~~~~~-----~~~~~lvEe~i~G~e~sv 201 (201)
|+.++++.+.. ....++|||||.|.||++
T Consensus 173 El~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv 206 (358)
T PRK13278 173 EFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYF 206 (358)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEecCCCcEEEE
Confidence 99999987531 245699999999999985
No 48
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.83 E-value=5.1e-20 Score=148.29 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=120.7
Q ss_pred cccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecc--ccCCHHHHHHHHHCCCc
Q 042131 23 RGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEI--EHVDVAIMEKLEQQGVD 100 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~--~~i~~~~~~~l~~~g~~ 100 (201)
+++.++++++++|+++.+++..+.. ... .+. ..... ..|++.... ......++..++..|++
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~-~~~-------~~~--~~~~~------~~d~v~~r~~~~~~~~~~~~~l~~~g~~ 75 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIP-LTF-------NEG--PRELA------ELDVVIVRIVSMFRGLAVARYLESLGVP 75 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcE-Eec-------cCC--CccCC------CCCEEEEechhHhhHHHHHHHHHHCCCe
Confidence 6789999999999999999862111 111 000 00011 234432111 11123566778888988
Q ss_pred ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 101 CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 101 ~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
+.++++++..+.||..++++|+++|+|+|++..+.+.+++.++.++++||+|+||..|+ +|+|++++++.+++.++++.
T Consensus 76 ~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~~p~vvKP~~g~-~g~gv~~i~~~~~l~~~~~~ 154 (277)
T TIGR00768 76 VINSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPVVLKPVFGS-WGRLVSLARDKQAAETLLEH 154 (277)
T ss_pred eeCCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcCCCEEEEECcCC-CCCceEEEcCHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999975 89999999999999988776
Q ss_pred hcCC---CCceEEeecCCCce
Q 042131 181 LGGF---DRSLYIEKWAPFVK 198 (201)
Q Consensus 181 ~~~~---~~~~lvEe~i~G~e 198 (201)
+... ...+++||||+|.+
T Consensus 155 ~~~~~~~~~~~lvQe~I~~~~ 175 (277)
T TIGR00768 155 FEQLNGPQNLFYVQEYIKKPG 175 (277)
T ss_pred HHHhcccCCcEEEEeeecCCC
Confidence 5421 23599999999654
No 49
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.81 E-value=5.5e-19 Score=142.80 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=116.1
Q ss_pred hcccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecc--ccCCHHHHHHHHHCCC
Q 042131 22 RRGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEI--EHVDVAIMEKLEQQGV 99 (201)
Q Consensus 22 ~~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~--~~i~~~~~~~l~~~g~ 99 (201)
+..+.|.++++++|+++..++..+.. ... .+. ..+.. ..|++.... ..........++..|+
T Consensus 10 ~~~~~l~~al~~~g~~~~~~~~~~~~-~~~-------~~~--~~~~~------~~d~v~~r~~~~~~~~~~~~~le~~g~ 73 (280)
T TIGR02144 10 PDEKMLIEELEKLGLPYRKIYVPALP-LPF-------GER--PKELE------DVDVAIIRCVSQSRALYSARLLEALGV 73 (280)
T ss_pred HHHHHHHHHHHHcCCceEEEEhhheE-EEc-------CCC--ccccC------CCCEEEEcCcchhhHHHHHHHHHHCCC
Confidence 35678999999999999988762111 011 000 00111 334332110 0111233456788899
Q ss_pred cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHH
Q 042131 100 DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAIT 179 (201)
Q Consensus 100 ~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~ 179 (201)
++++++++++++.||..++++|+++|||+|++..+.+.+++..+.+.++||+|+||..|+ +|+|++++++.+++.++++
T Consensus 74 ~~~n~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~P~vvKP~~g~-~g~gv~~v~~~~~l~~~~~ 152 (280)
T TIGR02144 74 PVINSSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGYPVVLKPVIGS-WGRLVALIRDKDELESLLE 152 (280)
T ss_pred cEECcHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcCCCEEEEECcCC-CcCCEEEECCHHHHHHHHH
Confidence 888999999999999999999999999999999999999988888889999999999975 8999999999999988764
Q ss_pred Hh---cC-CCCceEEeecCCCc
Q 042131 180 AL---GG-FDRSLYIEKWAPFV 197 (201)
Q Consensus 180 ~~---~~-~~~~~lvEe~i~G~ 197 (201)
.. .. ....+++|+||+|.
T Consensus 153 ~~~~~~~~~~~~~ivQefI~~~ 174 (280)
T TIGR02144 153 HKEVLGGSQHKLFYIQEYINKP 174 (280)
T ss_pred HHHhhcCCcCCeEEEEcccCCC
Confidence 32 21 23459999999754
No 50
>PRK06849 hypothetical protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=152.54 Aligned_cols=175 Identities=13% Similarity=-0.026 Sum_probs=123.2
Q ss_pred Cchhhhhccc-----ccccccccCCCeEEEECC-CCCcc--cccCCCCCCCCCCcccc--CCCC----Hhhhh------c
Q 042131 16 SPTIHCRRGR-----RFPVDRPLKDSRLWELDS-GAIAA--RGISPPPLLDSARPEVH--NFEL----PVAVV------A 75 (201)
Q Consensus 16 ~~~i~~~~g~-----~l~~aa~~~G~~v~~~~~-~~~~~--~~~~~~~~~~a~~~~~~--~~~d----~~~l~------~ 75 (201)
.++|++.+++ .+++++++.|++|++++. ..... .+. ++.++.. ...+ .+.+. .
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~-------~d~~~~~p~p~~d~~~~~~~L~~i~~~~~ 76 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRA-------VDGFYTIPSPRWDPDAYIQALLSIVQREN 76 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHh-------hhheEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 3567776655 488999999999999998 44332 223 3444322 2222 23333 5
Q ss_pred CCeEEeccccCC--HHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh-CCCEE
Q 042131 76 CGVLTVEIEHVD--VAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF-GYPLM 152 (201)
Q Consensus 76 ~d~i~~~~~~i~--~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~P~V 152 (201)
+|++....+... ....+.++.......++.++++.+.||..|+++++++|+|+|+++.+++.+++.++..+. +||+|
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~~P~v 156 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPHTPYV 156 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCCCcEE
Confidence 677764444331 111233443322458899999999999999999999999999999999999998877776 89999
Q ss_pred EeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 153 VKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 153 vKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+||+.|+ +|.|+.++.+.+++.... ......+++||||+|+||++
T Consensus 157 lKP~~~~-~~~~v~~~~~~~~l~~~~---~~~~~~~ivQe~I~G~e~~~ 201 (389)
T PRK06849 157 LKPIYSR-FVRRVDLLPKEAALKELP---ISKDNPWVMQEFIQGKEYCS 201 (389)
T ss_pred EEeCccc-CCCeEEEecCHHHhcccc---cCCCCCeEEEEEecCCeEEE
Confidence 9999975 888999999865544321 11123499999999999864
No 51
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.79 E-value=3.2e-18 Score=141.32 Aligned_cols=133 Identities=23% Similarity=0.297 Sum_probs=113.0
Q ss_pred CCHhhhh------cCCeEEeccccCC-HHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHH
Q 042131 68 ELPVAVV------ACGVLTVEIEHVD-VAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLES 139 (201)
Q Consensus 68 ~d~~~l~------~~d~i~~~~~~i~-~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~ 139 (201)
.|.+.+. .+|.+....|.+. ..+.+.+++.|++ ++|+.++.++..+|..+|++++++|||++.+..+++.++
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~ 129 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEE 129 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHH
Confidence 4566665 5666655555443 3567899999994 699999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCceeeC
Q 042131 140 ARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 140 ~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
+..++++.+.|+||||...+ +||||.++.+.+|..++..++.. ....++||||++|.|+|+
T Consensus 130 a~ayi~~~g~piVVKadGLa-aGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~ 196 (428)
T COG0151 130 AKAYIDEKGAPIVVKADGLA-AGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSL 196 (428)
T ss_pred HHHHHHHcCCCEEEeccccc-CCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEE
Confidence 99999999999999998765 99999999999999998876432 225699999999999985
No 52
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.79 E-value=1.6e-18 Score=146.64 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=132.8
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCcc-------ccCCCCHhhhh------cCCeEE--eccccCCHH
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPE-------VHNFELPVAVV------ACGVLT--VEIEHVDVA 89 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~-------~~~~~d~~~l~------~~d~i~--~~~~~i~~~ 89 (201)
+++++|+++|++++.+-+ .|.....+.- +|+-+ -.+|.+.++|+ .++.+. +.|..-..+
T Consensus 16 RVIRtar~lGi~tVAVYSdaDa~A~hV~~-----ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~ 90 (645)
T COG4770 16 RVIRTARDLGIRTVAVYSDADADALHVRM-----ADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENAD 90 (645)
T ss_pred HHHHHHHHcCCceEEEEecCCCCchhhhh-----cchhhhcCCCchhhhhccHHHHHHHHHHhCcccccCCccccccCHH
Confidence 677899999999998877 6655544311 44422 25688888887 566665 333233468
Q ss_pred HHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 90 IMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 90 ~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
+++.+++.|+ .++|++.+|+.+-||...|.++.+.|+|+.+.+ ...+.+++..+++++|||++||...|| ||||++
T Consensus 91 FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGG-GGKGMR 169 (645)
T COG4770 91 FAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGG-GGKGMR 169 (645)
T ss_pred HHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEeccCC-CCCceE
Confidence 8899999998 789999999999999999999999999997755 578999999999999999999999988 999999
Q ss_pred EcCCHHHHHHHHHHhc------CCCCceEEeecCCCc
Q 042131 167 VAKSEEELSSAITALG------GFDRSLYIEKWAPFV 197 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~ 197 (201)
++++.+|+.++++... -.++.++||+|+.-+
T Consensus 170 vv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P 206 (645)
T COG4770 170 VVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP 206 (645)
T ss_pred eecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC
Confidence 9999999998886432 134569999999754
No 53
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.78 E-value=2.3e-18 Score=143.91 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=129.9
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccc-------cCCCCHhhhh------cCCeEEec--cccCCHH
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEV-------HNFELPVAVV------ACGVLTVE--IEHVDVA 89 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~d~i~~~--~~~i~~~ 89 (201)
++++.|+++|++++.+-+ .|.....+.. +|+.+. .+|.+.+.++ .+..+... +..-..+
T Consensus 12 RVirTakkmGI~tVAV~Sd~D~~SlHVk~-----ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~ 86 (670)
T KOG0238|consen 12 RVIRTAKKMGIRTVAVYSDADRNSLHVKM-----ADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAE 86 (670)
T ss_pred hhhhHHHHhCCeEEEEEccCccccceeec-----ccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchH
Confidence 567899999999998877 5554443321 454321 3466666665 55666432 2223467
Q ss_pred HHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 90 IMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 90 ~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
+++.+++.|+ .++|++.+|+-+.||...|++++..|+|+.+.+ ...|.+++.+.++++|||+++|+..|| ||+|++
T Consensus 87 Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GG-GGkGMr 165 (670)
T KOG0238|consen 87 FAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGG-GGKGMR 165 (670)
T ss_pred HHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCC-CCcceE
Confidence 8899999998 679999999999999999999999999997754 678899999999999999999999988 999999
Q ss_pred EcCCHHHHHHHHHHhc------CCCCceEEeecCCCce
Q 042131 167 VAKSEEELSSAITALG------GFDRSLYIEKWAPFVK 198 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~e 198 (201)
++.+.+|+++.++... -.++.+|+|+||+-++
T Consensus 166 ia~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 166 IAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred eecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 9999999988886432 1345699999998653
No 54
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.78 E-value=2.7e-18 Score=141.30 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=126.7
Q ss_pred cccccccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCccccCC-C-CHhhhh---cCCeEEeccccCC-HHHHH-
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPEVHNF-E-LPVAVV---ACGVLTVEIEHVD-VAIME- 92 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~~~~~-~-d~~~l~---~~d~i~~~~~~i~-~~~~~- 92 (201)
+|...++++++.||+|+++++ +..-.. .+ +|..+..+. . ....+. ..|.+...+..-. ...+-
T Consensus 17 sG~qac~aLkeeg~~vvlvnsnpAti~td~e~-------AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~ 89 (400)
T COG0458 17 SGTQACKALKEEGYGVVLVNSNPATIMTDPEL-------ADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALE 89 (400)
T ss_pred hHHHHHHHHHhcCCeEEEEcCCCccccCCchh-------cceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHH
Confidence 678899999999999999998 322211 23 555444332 2 233333 6677653333211 11111
Q ss_pred -----HHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 93 -----KLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 93 -----~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
.+++.|+ .++.+.++++++.||++|+++|+++|+|+| +...++.+++.+..+.+|||+||||..+ .||.|..
T Consensus 90 l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~-lGG~G~~ 167 (400)
T COG0458 90 LKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFG-LGGSGGG 167 (400)
T ss_pred HHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcCCCEEEecCcC-CCCCcee
Confidence 3556688 468999999999999999999999999999 7788999999999999999999999996 5999999
Q ss_pred EcCCHHHHHHHHHHhcC--CCCceEEeecCCCc
Q 042131 167 VAKSEEELSSAITALGG--FDRSLYIEKWAPFV 197 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~--~~~~~lvEe~i~G~ 197 (201)
+++|.+||.+....... ...++|+||+|.|-
T Consensus 168 i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ 200 (400)
T COG0458 168 IAYNEEELEEIIEEGLRASPVEEVLIEESIIGW 200 (400)
T ss_pred EEeCHHHHHHHHHhccccCccccceeeeeecCc
Confidence 99999999999987653 33679999999984
No 55
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.77 E-value=5.2e-18 Score=144.49 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=96.9
Q ss_pred HHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc--cCCHHHHHHHHHH--hCCCEEEeecCCCCCC
Q 042131 88 VAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME--VNDLESARRAGKQ--FGYPLMVKSKSLAYDG 162 (201)
Q Consensus 88 ~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~--~~~P~VvKp~~g~~~g 162 (201)
..+...|+..|++ ++++.+++.++.||..++++++++|||+|++.. ..+.+++.+.++. +|||+||||..|+ +|
T Consensus 116 G~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~~GG-SS 194 (493)
T PRK06524 116 EETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTPYGD-SG 194 (493)
T ss_pred HHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEECCCC-CC
Confidence 4556778899995 499999999999999999999999999999887 4667777666665 9999999999875 99
Q ss_pred CCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 163 RGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+|++++++.+|+..+++.+.. ...++||+||+|.|++|
T Consensus 195 ~GV~~Vkn~eELe~a~~~~~~-~~~viVEe~I~GrEitV 232 (493)
T PRK06524 195 STTFFVRGQRDWDKYAGGIVG-QPEIKVMKRIRNVEVCI 232 (493)
T ss_pred cCEEEeCCHHHHHHHHHHhcC-CCCEEEEeccCcEEEEE
Confidence 999999999999999888653 24599999999999875
No 56
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.76 E-value=8.2e-18 Score=140.53 Aligned_cols=183 Identities=19% Similarity=0.207 Sum_probs=123.5
Q ss_pred Cchhhhhccccccccc-ccCCCeEEEECC-CC-CcccccCCCCCCCCCCccccCC-CC------Hh-----hhhcCCeEE
Q 042131 16 SPTIHCRRGRRFPVDR-PLKDSRLWELDS-GA-IAARGISPPPLLDSARPEVHNF-EL------PV-----AVVACGVLT 80 (201)
Q Consensus 16 ~~~i~~~~g~~l~~aa-~~~G~~v~~~~~-~~-~~~~~~~~~~~~~a~~~~~~~~-~d------~~-----~l~~~d~i~ 80 (201)
.-.|.+.+|+.+++++ .+.||+|+.++- .+ -.+..... ....+.....+. .. .. .....|++.
T Consensus 15 EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf 92 (364)
T PRK14570 15 EHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDS--VPDPPKLIKRDVLPIVSLIPGCGIFVNNKNLEIDVVF 92 (364)
T ss_pred chhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCc--cccccccccccccccccccccccccccCcCcCCCEEE
Confidence 3457778999999998 688999987665 33 11111100 000000000000 00 00 001355543
Q ss_pred eccc---cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccC------CHHHHHHH-HHHhCC
Q 042131 81 VEIE---HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN------DLESARRA-GKQFGY 149 (201)
Q Consensus 81 ~~~~---~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~------~~~~~~~~-~~~~~~ 149 (201)
.-.- +-+..+-..|+.+|++ ++++..++.++.||..++++|+++|||+|++..++ +.+++... .+.++|
T Consensus 93 ~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~ 172 (364)
T PRK14570 93 PIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGY 172 (364)
T ss_pred EcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhcCC
Confidence 1111 1122344578889994 58888999999999999999999999999976653 34444433 367899
Q ss_pred CEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 150 PLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 150 P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|+||||..+| +|.||.++++.+|+.++++.+....+.+|||+||+|+|++|
T Consensus 173 PviVKP~~~G-sS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~GrEi~v 223 (364)
T PRK14570 173 PVIVKPAVLG-SSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIEAREIEC 223 (364)
T ss_pred CEEEEeCCCC-CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcCCEEEEE
Confidence 9999999976 78899999999999999998776556799999999999975
No 57
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.76 E-value=1.5e-17 Score=151.95 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=124.0
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccCCCC-CCCCCCccccCCC-C-HhhhhcCCeEEecccc---CCHH
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPP-LLDSARPEVHNFE-L-PVAVVACGVLTVEIEH---VDVA 89 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~-~~~a~~~~~~~~~-d-~~~l~~~d~i~~~~~~---i~~~ 89 (201)
-.|.+.+|+.+++++.+.||+|+.++. .+..+......+ ....+.. ...+. + ......+|++..-.-+ -+..
T Consensus 465 ~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~ 543 (809)
T PRK14573 465 HDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSG-KSVLSSEIAQALAKVDVVLPILHGPFGEDGT 543 (809)
T ss_pred hHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEeccccccccccccc-ccccchhhhhccccCCEEEEcCCCCCCCChH
Confidence 345566788999999999999998776 322111110000 0000000 00000 0 0011245654321111 1223
Q ss_pred HHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCC------HH-HHHHHHHHhCCCEEEeecCCCCC
Q 042131 90 IMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVND------LE-SARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 90 ~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~------~~-~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
+-..|+..|++ ++++..++.++.||..+|++|+++|||+|++..++. .+ .+.+..++++||+||||..+| +
T Consensus 544 iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~G-s 622 (809)
T PRK14573 544 MQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHLG-S 622 (809)
T ss_pred HHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCCCC-C
Confidence 44578888984 689999999999999999999999999999887753 22 234556789999999999987 7
Q ss_pred CCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceeeC
Q 042131 162 GRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~sv 201 (201)
|.||.++++.+||..+++.+....+.+||||||.| +|++|
T Consensus 623 S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v 663 (809)
T PRK14573 623 SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEV 663 (809)
T ss_pred CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEE
Confidence 88999999999999999987655556999999765 89985
No 58
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.76 E-value=1.1e-18 Score=132.07 Aligned_cols=91 Identities=24% Similarity=0.410 Sum_probs=73.6
Q ss_pred HHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCC----C
Q 042131 110 IIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGF----D 185 (201)
Q Consensus 110 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~----~ 185 (201)
++.||..|+++++++|+|+|++..+++.+++..+.+.++||+||||..|+ +|+|++++++.+|+.++++.+... .
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~-gs~gv~~~~~~~~l~~~~~~~~~~~~~~~ 79 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLGFPFVVKPVDGS-GSRGVFIVHSPEELEAALAEIREDSPLGN 79 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSSSSEEEEESS-S-TTTT-EEESSHHHHHHHHHHHHHHHS-HS
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEcCccc-cCCCEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 47899999999999999999999999999999999999999999999975 899999999999999998876421 3
Q ss_pred CceEEeecCCCceeeC
Q 042131 186 RSLYIEKWAPFVKVNV 201 (201)
Q Consensus 186 ~~~lvEe~i~G~e~sv 201 (201)
..+++||||+|.||++
T Consensus 80 ~~~ivqe~i~g~e~~~ 95 (184)
T PF13535_consen 80 GPVIVQEYIPGDEYSV 95 (184)
T ss_dssp SSEEEEE---SEEEEE
T ss_pred ccEEEEEeeeeeeEEE
Confidence 4599999999999985
No 59
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.2e-17 Score=136.80 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=121.1
Q ss_pred hhcccccccccccCCCeEEEECC-CCCc-ccccCC-CC-CCCCC-C--ccc-cCCCCHhhhhcCCeEEeccccC---CHH
Q 042131 21 CRRGRRFPVDRPLKDSRLWELDS-GAIA-ARGISP-PP-LLDSA-R--PEV-HNFELPVAVVACGVLTVEIEHV---DVA 89 (201)
Q Consensus 21 ~~~g~~l~~aa~~~G~~v~~~~~-~~~~-~~~~~~-~~-~~~a~-~--~~~-~~~~d~~~l~~~d~i~~~~~~i---~~~ 89 (201)
..+.-++..++++.||++.++++ ...- ...... .. ....+ . +.. ....+...+...|++....... ...
T Consensus 16 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~ 95 (318)
T COG0189 16 KDTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATR 95 (318)
T ss_pred cchHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHH
Confidence 34556778899999999998887 2111 000000 00 00000 0 000 0011111111445554211111 345
Q ss_pred HHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHH-HHhCCCEEEeecCCCCCCCCeEEc
Q 042131 90 IMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAG-KQFGYPLMVKSKSLAYDGRGNAVA 168 (201)
Q Consensus 90 ~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~-~~~~~P~VvKp~~g~~~g~gv~~~ 168 (201)
++..++..|.++.|+++++..|.||..+.++|...|+|+|+|.+..+.++...++ +.+|||+|+||.+|+ +|+||+++
T Consensus 96 ~~~~~E~~G~~viN~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs-~G~gV~~v 174 (318)
T COG0189 96 FLRLAERKGVPVINDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKPLDGS-GGRGVFLV 174 (318)
T ss_pred HHHHHHHcCCeEECCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcCCCEEEeeCCCC-CccceEEe
Confidence 5678899999999999999999999999999999999999999999987766665 457899999999975 99999999
Q ss_pred CCHH-HHHHHHHHhcCCC-CceEEeecCCCc
Q 042131 169 KSEE-ELSSAITALGGFD-RSLYIEKWAPFV 197 (201)
Q Consensus 169 ~~~~-el~~~~~~~~~~~-~~~lvEe~i~G~ 197 (201)
++.+ ++.+..+.+.+.. ..+|+||||+-.
T Consensus 175 ~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~ 205 (318)
T COG0189 175 EDADPELLSLLETLTQEGRKLIIVQEYIPKA 205 (318)
T ss_pred cCCChhHHHHHHHHhccccceEehhhhcCcc
Confidence 9999 9998888876543 469999999743
No 60
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.74 E-value=2e-17 Score=135.34 Aligned_cols=168 Identities=20% Similarity=0.208 Sum_probs=123.6
Q ss_pred ccccccccc-CCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----------cCCeEEeccccC-CHHHH
Q 042131 25 RRFPVDRPL-KDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----------ACGVLTVEIEHV-DVAIM 91 (201)
Q Consensus 25 ~~l~~aa~~-~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----------~~d~i~~~~~~i-~~~~~ 91 (201)
+.++..+++ ..++++..+. ++.+.... +|+.+.++. +.++.. .+|++....... -....
T Consensus 12 ~~~i~~lr~~~~~~i~~sh~~~~~~~~~~-------aD~~~~eP~-~~~~yv~~~l~~C~~~~Idv~~P~~~~~~l~~~r 83 (329)
T PF15632_consen 12 RDIIRSLRANRDFTIIASHRDPRAPILYA-------ADEAYLEPA-DGEEYVDWCLDFCKEHGIDVFVPGRNRELLAAHR 83 (329)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCchHHhc-------CceeeecCC-CHHHHHHHHHHHHHHhCCeEEEcCccHHHHHHHH
Confidence 344445555 4566666666 67777777 888776665 433332 667765322211 12234
Q ss_pred HHHHHCCCcc-c-ccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC---EEEeecCCCCCCCCeE
Q 042131 92 EKLEQQGVDC-Q-PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP---LMVKSKSLAYDGRGNA 166 (201)
Q Consensus 92 ~~l~~~g~~~-~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P---~VvKp~~g~~~g~gv~ 166 (201)
+.+++.|+.+ . ++.++++++.||..+.+.++++|+|+|+++.+++.++++.+++++++| ++|||..|. +|.|.+
T Consensus 84 ~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~-gg~GFr 162 (329)
T PF15632_consen 84 DEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGI-GGRGFR 162 (329)
T ss_pred HHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCC-CcceEE
Confidence 5788899843 4 789999999999999999999999999999999999999999998777 999999975 899999
Q ss_pred EcC-CHHHHHHHHH-------------Hhc--CCCCceEEeecCCCceeeC
Q 042131 167 VAK-SEEELSSAIT-------------ALG--GFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 167 ~~~-~~~el~~~~~-------------~~~--~~~~~~lvEe~i~G~e~sv 201 (201)
+++ +.+++....+ .+. .....+||.||++|+||||
T Consensus 163 ~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~EySV 213 (329)
T PF15632_consen 163 VLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGPEYSV 213 (329)
T ss_pred EEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCCeEEE
Confidence 999 5565554443 122 2234699999999999997
No 61
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.73 E-value=5e-17 Score=141.99 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=132.2
Q ss_pred ccccccccCCCeEEEECC-CCCcc-cccCCCCCCCCCCcc--------ccCCCCHhhhh------cCCeEEecccc--CC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAA-RGISPPPLLDSARPE--------VHNFELPVAVV------ACGVLTVEIEH--VD 87 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~-~~~~~~~~~~a~~~~--------~~~~~d~~~l~------~~d~i~~~~~~--i~ 87 (201)
++.+||.++|++++.+-+ ++... .++. +|+.+ +..|.+++.++ .+|.|-..... -.
T Consensus 21 RvFRAa~ELgi~TVAIys~ED~~S~HR~K------ADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn 94 (1149)
T COG1038 21 RVFRAANELGIKTVAIYSEEDRLSLHRFK------ADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSEN 94 (1149)
T ss_pred HHHHHHHhcCceEEEEeeccccchhhhcc------ccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcccccCC
Confidence 566899999999998887 55432 2222 44432 35577888777 77877533322 24
Q ss_pred HHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCc-c-ccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 88 VAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEF-M-EVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 88 ~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~-~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
.+++..+.+.|+ .++|.++.++.+.||...+....+.|+|+.+. - .+++.+++.+++++.|||++||...|| ||+|
T Consensus 95 ~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GG-GGRG 173 (1149)
T COG1038 95 PEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGG-GGRG 173 (1149)
T ss_pred HHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCC-Cccc
Confidence 578899999998 78999999999999999999999999999553 3 567899999999999999999999988 9999
Q ss_pred eEEcCCHHHHHHHHHHhc------CCCCceEEeecCCCce
Q 042131 165 NAVAKSEEELSSAITALG------GFDRSLYIEKWAPFVK 198 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~e 198 (201)
++++++.++|.+++.+.. -..++++||+||+.+.
T Consensus 174 MR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk 213 (1149)
T COG1038 174 MRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK 213 (1149)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc
Confidence 999999999998887642 1345699999998763
No 62
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.70 E-value=1.8e-16 Score=142.64 Aligned_cols=144 Identities=18% Similarity=0.140 Sum_probs=108.6
Q ss_pred hcccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccccCCHHHHHHHHHCCCcc
Q 042131 22 RRGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEHVDVAIMEKLEQQGVDC 101 (201)
Q Consensus 22 ~~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~i~~~~~~~l~~~g~~~ 101 (201)
.+.+.++++|+++|+++.+++.... ..++ . ... ..+.+. ..+...
T Consensus 432 ~sT~~li~aA~~rGi~v~~ld~~~~-~l~l-------~-------~g~-----~~~~v~---------------~~~~t~ 476 (752)
T PRK02471 432 LSTQILLFDAIQRGIQVEILDEQDQ-FLKL-------Q-------KGD-----HVEYVK---------------NGNMTS 476 (752)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCcc-eehh-------c-------cCC-----CeeEEE---------------eccccC
Confidence 4677899999999999999986211 1122 0 000 111110 001233
Q ss_pred cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh-CCCEEEeecCCCCCCCCeEEc---CCHHHHHHH
Q 042131 102 QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF-GYPLMVKSKSLAYDGRGNAVA---KSEEELSSA 177 (201)
Q Consensus 102 ~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~P~VvKp~~g~~~g~gv~~~---~~~~el~~~ 177 (201)
.++..+..++.||..++++|+++|||+|++..+.+.+++...++.+ |||+||||..|+ +|+||.++ ++.+++.++
T Consensus 477 ~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g~PvVVKP~~g~-~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 477 KDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFADKAIVVKPKSTN-FGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcCCCEEEEECCCC-CcCCeEEecCcCCHHHHHHH
Confidence 4566678888999999999999999999999999998888777764 899999999976 89999975 578899998
Q ss_pred HHHhcCCCCceEEeecCCCceeeC
Q 042131 178 ITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 178 ~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+.........+||||||+|.||+|
T Consensus 556 ~~~a~~~~~~vlVEEfI~G~E~Rv 579 (752)
T PRK02471 556 LEIAFREDSSVLVEEFIVGTEYRF 579 (752)
T ss_pred HHHHHhcCCcEEEEecccCCEEEE
Confidence 887665555699999999999975
No 63
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.70 E-value=2.6e-16 Score=137.80 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=110.3
Q ss_pred cccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccccCCHHHHHHHHHCCCccc
Q 042131 23 RGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEHVDVAIMEKLEQQGVDCQ 102 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~i~~~~~~~l~~~g~~~~ 102 (201)
+.+.++.+|++.|+.+++++.++. ...+ . . ..+..... +. ....
T Consensus 243 y~~~Ii~~a~~~Gi~~~~~~se~~-~~~L-------~-------~-------g~~~~~~~------------~s--~~~~ 286 (547)
T TIGR03103 243 YARIIVDEARRRGIEVEVLDAEGG-LFRL-------S-------L-------GGRSIRCR------------ES--LSEL 286 (547)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCC-EEEe-------c-------C-------CceEEEEE------------ec--cCCC
Confidence 447899999999999998875221 1222 1 0 11111100 11 1245
Q ss_pred ccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE-cCCHHHHHHHHHHh
Q 042131 103 PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV-AKSEEELSSAITAL 181 (201)
Q Consensus 103 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~-~~~~~el~~~~~~~ 181 (201)
+++.++.++.||..++++|+++|||+|++..+.+.+++.++++++| |+||||..|+ +|+||++ +++.+++.++++..
T Consensus 287 ~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~G-~vVVKP~~G~-~G~Gv~v~v~~~~eL~~a~~~a 364 (547)
T TIGR03103 287 TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG-AVVVKPVRGE-QGKGISVDVRTPDDLEAAIAKA 364 (547)
T ss_pred CCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhC-CEEEEECCCC-CCcCeEEecCCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999998 6999999975 9999997 99999999999887
Q ss_pred cCCCCceEEeecCCCceeeC
Q 042131 182 GGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 182 ~~~~~~~lvEe~i~G~e~sv 201 (201)
......+++|+||+|.+|.|
T Consensus 365 ~~~~~~vlvEe~i~G~d~Rv 384 (547)
T TIGR03103 365 RQFCDRVLLERYVPGEDLRL 384 (547)
T ss_pred HhcCCcEEEEEeccCCeEEE
Confidence 65445699999999998753
No 64
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.69 E-value=1.7e-16 Score=143.02 Aligned_cols=100 Identities=28% Similarity=0.409 Sum_probs=91.2
Q ss_pred ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE-cCCHHHHHHHHH
Q 042131 101 CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV-AKSEEELSSAIT 179 (201)
Q Consensus 101 ~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~-~~~~~el~~~~~ 179 (201)
..++..+++++.||..++++|+++|||+|++..+.+.+++.++++++|||+|+||..|+ +|+||++ +++.+|+.++++
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~iG~PvVVKP~~G~-~G~GV~~~v~~~~el~~a~~ 280 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDGN-HGRGVTVNITTREEIEAAYA 280 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEecCCHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999976 8999997 999999999998
Q ss_pred HhcCCCCceEEeecCCCceeeC
Q 042131 180 ALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 180 ~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.+......++||+||+|.+|.|
T Consensus 281 ~a~~~~~~viVEe~I~G~d~Rv 302 (727)
T PRK14016 281 VASKESSDVIVERYIPGKDHRL 302 (727)
T ss_pred HHHHhCCeEEEEEecCCceEEE
Confidence 7764445699999999999864
No 65
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.66 E-value=7.5e-16 Score=137.27 Aligned_cols=99 Identities=23% Similarity=0.231 Sum_probs=86.8
Q ss_pred cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh-CCCEEEeecCCCCCCCCeEEcCC---HHHHHHH
Q 042131 102 QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF-GYPLMVKSKSLAYDGRGNAVAKS---EEELSSA 177 (201)
Q Consensus 102 ~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~P~VvKp~~g~~~g~gv~~~~~---~~el~~~ 177 (201)
..|..++.++.||..++++|+++|||+|++..+++.+++......+ ++|+||||.+|+ +|+||.++++ .+++.++
T Consensus 464 ~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~-~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 464 KDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTN-YGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred CccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCC-CcCCeEEecCcCCHHHHHHH
Confidence 4678889999999999999999999999999999988877777777 699999999976 8999999876 7889999
Q ss_pred HHHhcCCCCceEEeecCCCceeeC
Q 042131 178 ITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 178 ~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+.........+|||+||+|.||+|
T Consensus 543 l~~A~~~~~~VLVEefI~G~EyRv 566 (737)
T TIGR01435 543 LNIAFSEDSSVIIEEFLPGTEYRF 566 (737)
T ss_pred HHHHHhcCCeEEEEecccCCEEEE
Confidence 887665556799999999999975
No 66
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.66 E-value=7.4e-16 Score=141.24 Aligned_cols=98 Identities=27% Similarity=0.384 Sum_probs=89.6
Q ss_pred ccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE-cCCHHHHHHHHHHh
Q 042131 103 PKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV-AKSEEELSSAITAL 181 (201)
Q Consensus 103 ~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~-~~~~~el~~~~~~~ 181 (201)
.+..++.++.||..++++|+++|||+|++..+.+.+++.+++++++||+|+||.+|+ +|+||.+ +++.+++.++++.+
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig~PvVVKP~~g~-~G~GV~l~v~s~~el~~a~~~a 281 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGN-HGRGVTINILTRDEIESAYEAA 281 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCC-CccCEEEEeCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999975 8999998 99999999999887
Q ss_pred cCCCCceEEeecCCCceeeC
Q 042131 182 GGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 182 ~~~~~~~lvEe~i~G~e~sv 201 (201)
......+|||+||+|.+|.|
T Consensus 282 ~~~~~~vlVEefI~G~e~rv 301 (864)
T TIGR02068 282 VEESSGVIVERFITGRDHRL 301 (864)
T ss_pred HhhCCcEEEEEeccCCEEEE
Confidence 65445699999999999874
No 67
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.64 E-value=8.8e-16 Score=126.09 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=115.5
Q ss_pred cccccccccccCCCeEEEECC-C-CCccccc-CCCCCCCCCCccc-cCCCCHh--hh----hcCCeEEecccc-CCHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-G-AIAARGI-SPPPLLDSARPEV-HNFELPV--AV----VACGVLTVEIEH-VDVAIM 91 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~-~~~~~~~-~~~~~~~a~~~~~-~~~~d~~--~l----~~~d~i~~~~~~-i~~~~~ 91 (201)
+.-.+..-||+.|+++++++. . ..++.++ .. +|+.++ .++.|.. .+ ..-+++...... +..-..
T Consensus 27 sal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~-----~d~~i~~~~f~~~~~~~~~~~l~~~n~i~iPh~sf~~y~g~ 101 (366)
T PRK13277 27 SALDVFDGAKDEGFRTIAVCQKGRERTYREFKGI-----VDEVIVLDKFKDILSEKVQDELREENAIFVPNRSFAVYVGY 101 (366)
T ss_pred hHHHHhccHHhcCCcEEEEEcCCCcchhhhhccc-----cceEEEecchhhhhhHHHHHHHHHCCeEEecCCCeEEEecH
Confidence 334677889999999999998 3 4454444 11 566554 4455522 22 244554322211 111123
Q ss_pred HHHH-HCCCcccccHHHHHHH--hCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC--CCCeE
Q 042131 92 EKLE-QQGVDCQPKASTIRII--QDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD--GRGNA 166 (201)
Q Consensus 92 ~~l~-~~g~~~~~~~~~~~~~--~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~--g~gv~ 166 (201)
+.++ +..++.+.|...+++. +||..+.++|+++||++|+++. +. +++++|+||||.+++ | |+|++
T Consensus 102 ~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~--~p-------~eId~PVIVKp~~as-G~~srG~f 171 (366)
T PRK13277 102 DAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPYPKLFK--DP-------EEIDRPVIVKLPEAK-RRLERGFF 171 (366)
T ss_pred HHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCCceeec--Cc-------cccCccEEEEECCCC-CccccCeE
Confidence 5666 4667889999999887 7888887899999999999775 33 356799999999964 9 99999
Q ss_pred EcCCHHHHHHHHHHhcC-------CCCceEEeecCCCceeeC
Q 042131 167 VAKSEEELSSAITALGG-------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~-------~~~~~lvEe~i~G~e~sv 201 (201)
+++|.+|+......+.. ....++|||||.|.+|++
T Consensus 172 ~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~ 213 (366)
T PRK13277 172 TASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNF 213 (366)
T ss_pred eeCCHHHHHHHHHhhhhcCcccccccccceeEeccCCCEEEE
Confidence 99999999988776542 123467999999999975
No 68
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.64 E-value=5.6e-16 Score=119.69 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=66.7
Q ss_pred HHhhCCCCCCCccccCCHHHHH----HHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCC
Q 042131 120 HFSPHGIPLPEFMEVNDLESAR----RAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 120 ~l~~~gip~p~~~~~~~~~~~~----~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
+++.+|||+|++..++..+... +....++||++|||..+| ++.||.++++.+||..+++.+....+.+||||||+
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~G-sS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~ 79 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEG-SSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS 79 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTS-TTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCC-ccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec
Confidence 5789999999999887655443 346789999999999976 78899999999999999999877677899999999
Q ss_pred CceeeC
Q 042131 196 FVKVNV 201 (201)
Q Consensus 196 G~e~sv 201 (201)
|+||+|
T Consensus 80 G~E~tv 85 (203)
T PF07478_consen 80 GREFTV 85 (203)
T ss_dssp SEEEEE
T ss_pred ccceEE
Confidence 999986
No 69
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.63 E-value=2.1e-15 Score=114.54 Aligned_cols=88 Identities=26% Similarity=0.370 Sum_probs=74.7
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCE-EEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CC
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPL-MVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FD 185 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~-VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~ 185 (201)
+|...|++|+++|||++++..+++.+++.++++++++|+ |||+...+ +|+||.++++.+|..++++++.. ..
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~~ViKadGla-~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~ 80 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGYPYVVIKADGLA-AGKGVVIADDREEALEALREIFVDRKFGDAG 80 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSSSEEEEEESSSC-TTTSEEEESSHHHHHHHHHHHHTSSTTCCCG
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCCCceEEccCCCC-CCCEEEEeCCHHHHHHHHHHhccccccCCCC
Confidence 799999999999999999999999999999999999999 99998765 99999999999999999988642 34
Q ss_pred CceEEeecCCCceeeC
Q 042131 186 RSLYIEKWAPFVKVNV 201 (201)
Q Consensus 186 ~~~lvEe~i~G~e~sv 201 (201)
..++||||+.|.|+|+
T Consensus 81 ~~vvIEE~l~G~E~S~ 96 (194)
T PF01071_consen 81 SKVVIEEFLEGEEVSL 96 (194)
T ss_dssp SSEEEEE---SEEEEE
T ss_pred CcEEEEeccCCeEEEE
Confidence 6799999999999985
No 70
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.62 E-value=3.3e-15 Score=115.85 Aligned_cols=87 Identities=28% Similarity=0.419 Sum_probs=72.2
Q ss_pred CHHHHHHHHhhCCCCCCCcccc--CCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------C
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEV--NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG------F 184 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~--~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~ 184 (201)
||..++++++++|+|+|+.... ++.+++.++++++|||++|||..|+ ||+|+++++|.+||.++++.... .
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~gg-GG~gm~iv~~~~eL~~~~~~~~~~s~~~fg 79 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGG-GGRGMRIVHNEEELEEAFERAQRESPAAFG 79 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSS-TTTSEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccc-cccccccccchhhhhhhhhhccccCccccc
Confidence 8999999999999999998877 9999999999999999999999987 99999999999999998865321 2
Q ss_pred CCceEEeecCCCc-eee
Q 042131 185 DRSLYIEKWAPFV-KVN 200 (201)
Q Consensus 185 ~~~~lvEe~i~G~-e~s 200 (201)
.+.+++|+|+.|. ++.
T Consensus 80 ~~~v~iek~i~~~reiE 96 (211)
T PF02786_consen 80 DGPVLIEKFIEGAREIE 96 (211)
T ss_dssp TS-EEEEE--SSEEEEE
T ss_pred cceEEEeeehhhhhhhh
Confidence 3459999999994 543
No 71
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.61 E-value=1.5e-15 Score=114.03 Aligned_cols=75 Identities=33% Similarity=0.649 Sum_probs=64.8
Q ss_pred HhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCc
Q 042131 121 FSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 121 l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
|+++|||+|+|..+++.+++.++++++|||+|+|+..+||+|+|++++++.+|+..+++.+...+ +++|+||+.+
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~--~ilE~~v~f~ 75 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGP--CILEEFVPFD 75 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSC--EEEEE---ES
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCc--EEEEeccCCc
Confidence 67899999999999999999999999999999999999999999999999999999999986556 9999999875
No 72
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.57 E-value=6.1e-15 Score=112.92 Aligned_cols=86 Identities=26% Similarity=0.461 Sum_probs=57.2
Q ss_pred HhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh-CCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceE
Q 042131 111 IQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF-GYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLY 189 (201)
Q Consensus 111 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~l 189 (201)
+.||..+.++|+++|||+|+|.++.+.+++.++.+++ ++|+|+||..|+ .|+||.++++.+++...++.+......++
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~~p~ViKp~~g~-~G~gV~~i~~~~~~~~~l~~~~~~~~~~~ 79 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGGFPVVIKPLRGS-SGRGVFLINSPDELESLLDAFKRLENPIL 79 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH--SSEEEE-SB--------EEEESHCHHHHHHH-----TTT-E
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCC-CCCEEEEecCHHHHHHHHHHHHhccCcce
Confidence 4799999999999999999999999999999999999 899999999965 89999999999999998877654445599
Q ss_pred EeecCCCc
Q 042131 190 IEKWAPFV 197 (201)
Q Consensus 190 vEe~i~G~ 197 (201)
+|+||+..
T Consensus 80 ~Q~fI~~~ 87 (190)
T PF08443_consen 80 VQEFIPKD 87 (190)
T ss_dssp EEE----S
T ss_pred EeccccCC
Confidence 99999865
No 73
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.57 E-value=3.1e-14 Score=122.82 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=126.7
Q ss_pred ccccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCcc--------ccCCCCHhhhh------cCCeEEecccc--C
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPE--------VHNFELPVAVV------ACGVLTVEIEH--V 86 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~--------~~~~~d~~~l~------~~d~i~~~~~~--i 86 (201)
++.+++.++|.+++.+-+ .+.-.+ +- +|+.+ +..|..++.++ .+|.+...... -
T Consensus 47 RvFRa~tEL~~~tvAiYseqD~~sMHRqK-------ADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHPGYGFLSE 119 (1176)
T KOG0369|consen 47 RVFRAATELSMRTVAIYSEQDRLSMHRQK-------ADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHPGYGFLSE 119 (1176)
T ss_pred HHHHHHhhhcceEEEEEeccchhhhhhhc-------cccceecccCCCchhhhhhHHHHHHHHHHcCCCeecCCcccccc
Confidence 556789999999998877 443221 22 44432 23355556555 66666433222 2
Q ss_pred CHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 87 DVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 87 ~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
..++++...+.|+ .++|++++++.+.||...|.+.-+.|+|+.+.. .+++.+|+.++.++.|+|+|+|...|| ||+
T Consensus 120 rsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG-GGR 198 (1176)
T KOG0369|consen 120 RSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG-GGR 198 (1176)
T ss_pred chHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC-CCc
Confidence 3577888899998 689999999999999999999999999996643 679999999999999999999999988 999
Q ss_pred CeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCCc
Q 042131 164 GNAVAKSEEELSSAITALG------GFDRSLYIEKWAPFV 197 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~ 197 (201)
|++++++.+++++++++.. -.++.+.||+|++-+
T Consensus 199 GmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekP 238 (1176)
T KOG0369|consen 199 GMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKP 238 (1176)
T ss_pred ceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCc
Confidence 9999999999998887532 134559999999864
No 74
>PRK12458 glutathione synthetase; Provisional
Probab=99.57 E-value=1.9e-14 Score=119.35 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred HHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCCCCCCCeEEcCCHHH
Q 042131 95 EQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLAYDGRGNAVAKSEEE 173 (201)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~~~g~gv~~~~~~~e 173 (201)
+..|+++.|++++++.+.||..+..+++ +++|++.+..+.+++.++++++++| +|+||..|+ +|+||+++++.++
T Consensus 111 e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~-gG~gV~~v~~~~~ 186 (338)
T PRK12458 111 ARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGS-GGQGVFLIEKSAQ 186 (338)
T ss_pred HhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCC-CccCeEEEecCCh
Confidence 5668888999999999999999987665 6899999999999999999988765 999999974 9999999987663
Q ss_pred --HHHHHHHhcCCCCceEEeecCCCc
Q 042131 174 --LSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 174 --l~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
+...++.+.. ...+++|+||++.
T Consensus 187 ~~~~~ile~~~~-~~~~ivQeyI~~~ 211 (338)
T PRK12458 187 SNLNQILEFYSG-DGYVIAQEYLPGA 211 (338)
T ss_pred hhHHHHHHHHhh-CCCEEEEEcccCC
Confidence 5555554432 2349999999863
No 75
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.56 E-value=7.3e-14 Score=114.72 Aligned_cols=166 Identities=9% Similarity=0.096 Sum_probs=107.6
Q ss_pred hcccccccccccCCCeEEEECC-CCCcc-cc-------cCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc-------
Q 042131 22 RRGRRFPVDRPLKDSRLWELDS-GAIAA-RG-------ISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH------- 85 (201)
Q Consensus 22 ~~g~~l~~aa~~~G~~v~~~~~-~~~~~-~~-------~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~------- 85 (201)
.+...|+++|+++|++++++++ .-... .+ +...+ +...++.........+...|++......
T Consensus 18 ~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~ 95 (312)
T TIGR01380 18 DTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGP--NKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYI 95 (312)
T ss_pred ChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEecc--CCcceeecCcccccccccCCEEEEeCCCCCChhhh
Confidence 3678899999999999999998 32110 00 10000 0000111000000001134554422111
Q ss_pred CCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 86 VDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 86 i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
....+++.++..|+++.|++++++.+.||..+.+++. ++|+|....+.+++.+++++++ |+|+||..|+ +|+|+
T Consensus 96 ~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~~~~~~~~~~g-~vVvKPl~G~-~G~gv 169 (312)
T TIGR01380 96 YATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKAEIRAFLAEHG-DIVLKPLDGM-GGEGI 169 (312)
T ss_pred HHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHHHHHHHHHHcC-CEEEEECCCC-CCceE
Confidence 1135678888889989999999999999999887763 7999999899999999999988 9999999975 99999
Q ss_pred EEcCCH-HHHHHHHHHhcC-CCCceEEeecCC
Q 042131 166 AVAKSE-EELSSAITALGG-FDRSLYIEKWAP 195 (201)
Q Consensus 166 ~~~~~~-~el~~~~~~~~~-~~~~~lvEe~i~ 195 (201)
++++.. .++....+.+.. ....+++|+||+
T Consensus 170 ~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~ 201 (312)
T TIGR01380 170 FRLDPGDPNFNSILETMTQRGREPVMAQRYLP 201 (312)
T ss_pred EEEcCCCccHHHHHHHHHhccCCcEEEEeccc
Confidence 988753 233332232211 123499999997
No 76
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.55 E-value=5.5e-14 Score=115.26 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=101.5
Q ss_pred ccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc--CCHHHHHH-HHHCCCccc
Q 042131 26 RFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH--VDVAIMEK-LEQQGVDCQ 102 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~--i~~~~~~~-l~~~g~~~~ 102 (201)
.|..++++.|+.++.+|... + + .+. . ..|++...... ....+.+. .+.-|+++.
T Consensus 40 ~l~~~~~~~Gi~~v~Id~~~-p---l-------~~q---g---------pfDvilhK~~~~~~~~~~~~~~~e~pgv~vi 96 (328)
T PLN02941 40 SLEALARSKGIDLVAIDPSR-P---L-------SEQ---G---------PFDVILHKLYGKEWRQQLEEYREKHPDVTVL 96 (328)
T ss_pred HHHHHHHHCCCeEEEecCCC-C---c-------ccc---C---------CcCEEEEecCCHHHHHHHHHHHHHCCCcEEE
Confidence 57889999999999998621 1 2 100 0 22333311111 01222233 344577889
Q ss_pred ccHHHHHHHhCHHHHHHHHhhCC-------CCCCCccccCCHHHHH---HHHHHhCCCEEEeecCCC--CCCCCeEEcCC
Q 042131 103 PKASTIRIIQDKYIQKVHFSPHG-------IPLPEFMEVNDLESAR---RAGKQFGYPLMVKSKSLA--YDGRGNAVAKS 170 (201)
Q Consensus 103 ~~~~~~~~~~dK~~~~~~l~~~g-------ip~p~~~~~~~~~~~~---~~~~~~~~P~VvKp~~g~--~~g~gv~~~~~ 170 (201)
+++++++.+.||..+...|+++| ||+|++.++.+.+.+. ...++++||+|+||..|. ..|+++.++.+
T Consensus 97 dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~ 176 (328)
T PLN02941 97 DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYD 176 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecC
Confidence 99999999999999999999999 9999999999987644 234678999999999961 26789999999
Q ss_pred HHHHHHHHHHhcCCCCceEEeecCC
Q 042131 171 EEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 171 ~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
++.|.. + ..+ +++||||+
T Consensus 177 ~~~L~~----l-~~p--~~lQEfVn 194 (328)
T PLN02941 177 QEGLSK----L-EPP--LVLQEFVN 194 (328)
T ss_pred HHHHHh----c-CCc--EEEEEecC
Confidence 998776 3 235 99999995
No 77
>PRK05246 glutathione synthetase; Provisional
Probab=99.50 E-value=3.2e-13 Score=111.16 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=108.5
Q ss_pred hhcccccccccccCCCeEEEECC-CCCcc-cccCC--CCC-C--CCCCccccCCCCHhhhhcCCeEEecccc-C------
Q 042131 21 CRRGRRFPVDRPLKDSRLWELDS-GAIAA-RGISP--PPL-L--DSARPEVHNFELPVAVVACGVLTVEIEH-V------ 86 (201)
Q Consensus 21 ~~~g~~l~~aa~~~G~~v~~~~~-~~~~~-~~~~~--~~~-~--~a~~~~~~~~~d~~~l~~~d~i~~~~~~-i------ 86 (201)
..+..+|+++|+++|++++++++ .-... ..+.. .+. . ....++.......-.+...|++...... .
T Consensus 18 ~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~ 97 (316)
T PRK05246 18 KDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIY 97 (316)
T ss_pred CChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHHH
Confidence 34677899999999999999998 32211 11100 000 0 0000111000000001134555422111 1
Q ss_pred CHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 87 DVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 87 ~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
...+++.++..|+++.|++++++.+.||..+.+++. ++|+|...++.+++.+++++++ |+|+||..|+ +|+||+
T Consensus 98 ~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~~~~~~~~~~~~-~vVlKP~~G~-~G~gV~ 171 (316)
T PRK05246 98 ATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDKAEIRAFRAEHG-DIILKPLDGM-GGAGIF 171 (316)
T ss_pred HHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCHHHHHHHHHHCC-CEEEEECCCC-CccceE
Confidence 123567778788889999999999999999988765 7899999999999999999987 9999999975 999999
Q ss_pred EcCC-HHHHHHHHHHhcC-CCCceEEeecCCC
Q 042131 167 VAKS-EEELSSAITALGG-FDRSLYIEKWAPF 196 (201)
Q Consensus 167 ~~~~-~~el~~~~~~~~~-~~~~~lvEe~i~G 196 (201)
+++. ..++....+.+.. ....+++|+||+.
T Consensus 172 ~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~ 203 (316)
T PRK05246 172 RVKADDPNLGSILETLTEHGREPVMAQRYLPE 203 (316)
T ss_pred EEeCCCccHHHHHHHHHHccCCeEEEEecccc
Confidence 9854 3344333333321 2234999999975
No 78
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.42 E-value=2.4e-12 Score=109.84 Aligned_cols=134 Identities=23% Similarity=0.293 Sum_probs=109.3
Q ss_pred CCCHhhhh------cCCeEEeccccCC-HHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH
Q 042131 67 FELPVAVV------ACGVLTVEIEHVD-VAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE 138 (201)
Q Consensus 67 ~~d~~~l~------~~d~i~~~~~~i~-~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~ 138 (201)
..|.+++. +...+....|.+- ..+...|.+.|++ .+|+.++.++..+|...++++.+||||+..|..+++.+
T Consensus 54 ~~d~~ala~f~~e~~I~lVvvGPE~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e 133 (788)
T KOG0237|consen 54 VADFEALASFCKEHNINLVVVGPELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPE 133 (788)
T ss_pred hhhHHHHHHHHHHcceeEEEECCchhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHH
Confidence 33555555 4444445555443 3456788899995 58899999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHh------cCCCCceEEeecCCCceeeC
Q 042131 139 SARRAGKQFG-YPLMVKSKSLAYDGRGNAVAKSEEELSSAITAL------GGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 139 ~~~~~~~~~~-~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~------~~~~~~~lvEe~i~G~e~sv 201 (201)
++..+++..+ +++|||...-+ .||||.+..+.+|.-++++.+ +....+++|||+++|.|+|+
T Consensus 134 ~a~sfi~~~~~~~~ViKAdGLA-AGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEGeEvS~ 202 (788)
T KOG0237|consen 134 EAKSFIQSATDKALVIKADGLA-AGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEGEEVSF 202 (788)
T ss_pred HHHHHHHhCCCcceEEeecccc-cCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCcceEEE
Confidence 9999999988 56899997665 899999999999988888764 22446799999999999984
No 79
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.3e-11 Score=101.26 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=121.9
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEE---eccccCCHHHHH
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLT---VEIEHVDVAIME 92 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~---~~~~~i~~~~~~ 92 (201)
-.|.++++..++++.+..|+.+.-++. .... ... +.... ...+...|++. .....-+-.+-.
T Consensus 16 ~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~-~~~--------~~~~~-----~~~~~~~~vvfp~lhG~~gEDg~iqg 81 (317)
T COG1181 16 REVSLLSAKAVLRALKGFGYDVTPVDITEAGL-WML--------DKEVT-----KRVLQKADVVFPVLHGPYGEDGTIQG 81 (317)
T ss_pred ceEEEecHHHHHHHHhhcCceeEEEeccccce-EEe--------ccccc-----hhhcccCCEEEEeCCCCCCCCchHHH
Confidence 345667788888999999999987776 3221 111 00000 01111444432 111111223445
Q ss_pred HHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCC----HHHHHHHHHHhCCCEEEeecCCCCCCCCeEE
Q 042131 93 KLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVND----LESARRAGKQFGYPLMVKSKSLAYDGRGNAV 167 (201)
Q Consensus 93 ~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~----~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~ 167 (201)
.++..|+ .++.+..+...+.||..+|.+++..|+|++++..++. ...+.+..+.++||++|||...+ ++-|+..
T Consensus 82 ~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~g-SSvg~~~ 160 (317)
T COG1181 82 LLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREG-SSVGRSP 160 (317)
T ss_pred HHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCcc-ceeeEEE
Confidence 6777888 4688999999999999999999999999999887764 23334556678999999999965 6679999
Q ss_pred cCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 168 AKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 168 ~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+++.+|+..+++.....++++++|+|+.|+|++|
T Consensus 161 v~~~~d~~~~~e~a~~~d~~vl~e~~~~~rei~v 194 (317)
T COG1181 161 VNVEGDLQSALELAFKYDRDVLREQGITGREIEV 194 (317)
T ss_pred eeeccchHHHHHHHHHhCCceeeccCCCcceEEE
Confidence 9999999998888777777799999999998864
No 80
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.29 E-value=8.1e-13 Score=98.57 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=38.7
Q ss_pred HhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEE
Q 042131 111 IQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYI 190 (201)
Q Consensus 111 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lv 190 (201)
|.||+.+.++|+++|||+|.+......+ ...+|+|+||.+|+ ||.|++++++.+++....... .++
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~~~~viKp~~G~-Gg~~i~~~~~~~~~~~~~~~~------~i~ 66 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE-------PIDGPWVIKPRDGA-GGEGIRIVDSEDELEEFLNKL------RIV 66 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS---------SSSEEEEESS--------B--SS--TTE-------------EE
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc-------ccCCcEEEEeCCCC-CCCCeEEECCchhhccccccc------eEE
Confidence 6899999999999999999433222221 23689999999975 999999999999877654332 399
Q ss_pred eecCCCceeeC
Q 042131 191 EKWAPFVKVNV 201 (201)
Q Consensus 191 Ee~i~G~e~sv 201 (201)
||||+|.++||
T Consensus 67 Qe~i~G~~~Sv 77 (161)
T PF02655_consen 67 QEFIEGEPYSV 77 (161)
T ss_dssp EE---SEEEEE
T ss_pred eeeeCCEEeEE
Confidence 99999999985
No 81
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=110.53 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=125.4
Q ss_pred cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCcccc-----CCCCHhhhhcCC-eEEeccccCCHHHHHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVH-----NFELPVAVVACG-VLTVEIEHVDVAIMEKLE 95 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~-----~~~d~~~l~~~d-~i~~~~~~i~~~~~~~l~ 95 (201)
.+...++.++++|++++++.. ++.....+-- +|..+.+ ...|+-++..+. ++...-...+.+++-.|.
T Consensus 940 caV~~~rtLr~~g~kTimvNyNPETVSTDyDe-----cdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~pnNiA~~L~ 1014 (1435)
T KOG0370|consen 940 CAVGCARTLRKLGKKTIMVNYNPETVSTDYDE-----CDRLYFEEISYERVMDIYELENSEGIIISVGGQLPNNIALKLH 1014 (1435)
T ss_pred hhhhHHHHHHHcCCceEEEecCcccccCchHH-----HhhHhHhhhhhhhhhhhhhhccCCceEEEecCcCcchhhhHhH
Confidence 334667889999999999987 4332222200 2222221 122333333333 333222345566777788
Q ss_pred HCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHH
Q 042131 96 QQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174 (201)
Q Consensus 96 ~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el 174 (201)
+.|+ ..+.|++.+..+.|+..|.++|.+.|+..|++..+++.+++.+++++.||||+++|.+ --+|--+.++++.+||
T Consensus 1015 r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP~lvRPSY-VLSGaAMnv~~~~~dl 1093 (1435)
T KOG0370|consen 1015 RNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVLVRPSY-VLSGAAMNVVYSESDL 1093 (1435)
T ss_pred hcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccHHHHHHHHHhcCCceEecccc-eecchhhhhhhcHHHH
Confidence 8888 4689999999999999999999999999999999999999999999999999999987 3578889999999999
Q ss_pred HHHHHHhc--CCCCceEEeecCCCc
Q 042131 175 SSAITALG--GFDRSLYIEKWAPFV 197 (201)
Q Consensus 175 ~~~~~~~~--~~~~~~lvEe~i~G~ 197 (201)
+.+++... ...+.+++-+||+|.
T Consensus 1094 ~~~L~~A~~vs~dhPVVisKfie~A 1118 (1435)
T KOG0370|consen 1094 KSYLEQASAVSPDHPVVISKFIEGA 1118 (1435)
T ss_pred HHHHHHHhhcCCCCCEEhHHhhccc
Confidence 99998764 333449999999985
No 82
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.28 E-value=2.8e-11 Score=102.25 Aligned_cols=89 Identities=28% Similarity=0.335 Sum_probs=74.2
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhC-CCEEEeec--CCCCCCC-CeEEcCCHHHHHHHHHHhcCC----
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFG-YPLMVKSK--SLAYDGR-GNAVAKSEEELSSAITALGGF---- 184 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P~VvKp~--~g~~~g~-gv~~~~~~~el~~~~~~~~~~---- 184 (201)
+.+..|++|+++|||+|++..+++.+++.+++++++ ||+|+||. .|+.|+. ||++++|.+|+.++++++...
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 456778999999999999999999999999999999 99999998 3333333 899999999999999776431
Q ss_pred ---------CCceEEeecCC-CceeeC
Q 042131 185 ---------DRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 185 ---------~~~~lvEe~i~-G~e~sv 201 (201)
.+.++||+|++ |.|++|
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v 110 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYL 110 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEE
Confidence 13699999999 899854
No 83
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.23 E-value=1e-10 Score=92.89 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC---C-CC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD---G-RG 164 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~---g-~g 164 (201)
...++|.+..-.+.++....+...+|-.+.+.++++|+|.|+++.++|..+. ...++.||+|+||-.|+.- + ..
T Consensus 90 q~reeLSa~f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~--~~~el~FPvILKP~mgg~~~~~araK 167 (415)
T COG3919 90 QYREELSAFFEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDT--LVDELTFPVILKPGMGGSVHFEARAK 167 (415)
T ss_pred hhHHHHHHHhcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhhh--hhhheeeeEEecCCCCCcceeehhhh
Confidence 3456777764457899999999999999999999999999999999977654 3578899999999886411 1 25
Q ss_pred eEEcCCHHHHHHHHHHhc--CCCCceEEeecCCCc
Q 042131 165 NAVAKSEEELSSAITALG--GFDRSLYIEKWAPFV 197 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~--~~~~~~lvEe~i~G~ 197 (201)
++.+.+.+|+..++.... ..++.++|||||+|-
T Consensus 168 a~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGG 202 (415)
T COG3919 168 AFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGG 202 (415)
T ss_pred eeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 678889999988886643 356679999999984
No 84
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.23 E-value=7.9e-11 Score=99.61 Aligned_cols=88 Identities=26% Similarity=0.341 Sum_probs=75.0
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh-CCCEEEeecCCCCCCC----CeEEcCCHHHHHHHHHHhcCC---
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF-GYPLMVKSKSLAYDGR----GNAVAKSEEELSSAITALGGF--- 184 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~-~~P~VvKp~~g~~~g~----gv~~~~~~~el~~~~~~~~~~--- 184 (201)
++...+++|+.+|||+|++..+++.+++.++++++ +||+|+||... .+|+ ||.+.+|.+++.++++++...
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~PvVvK~~~~-~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~ 82 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVH-AGGRGKAGGVKLAKSPEEAREFAKQILGMTLV 82 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCCcEEEEEeeC-CCCCcccccEEEcCCHHHHHHHHHHhhcccee
Confidence 57788999999999999999999999999999999 99999999753 2444 899999999999999876522
Q ss_pred ------C----CceEEeecCC-CceeeC
Q 042131 185 ------D----RSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 185 ------~----~~~lvEe~i~-G~e~sv 201 (201)
. ..++||++++ |.|+.|
T Consensus 83 ~~~~~~~g~~~~gvlVe~~~~~~~E~~v 110 (388)
T PRK00696 83 THQTGPKGQPVNKVLVEEGADIAKEYYL 110 (388)
T ss_pred eeccCCCCCEEeEEEEEeccCCCceEEE
Confidence 1 2599999999 888864
No 85
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.21 E-value=3.3e-11 Score=96.35 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=116.4
Q ss_pred cccccccccccCCCeEEEECC--CCCcccccCCCCCCCC-CCccccCCCCH------hhhhcCCeEEeccc-cCCHHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS--GAIAARGISPPPLLDS-ARPEVHNFELP------VAVVACGVLTVEIE-HVDVAIME 92 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~--~~~~~~~~~~~~~~~a-~~~~~~~~~d~------~~l~~~d~i~~~~~-~i~~~~~~ 92 (201)
++-.+...||+.|+++++++. .+.++.++.. + +..++.++.|. +.+..-+++..... .+..-..+
T Consensus 28 SaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~-----a~e~i~v~~f~dil~~~iqe~L~~~n~I~IP~gSfv~Y~G~d 102 (361)
T COG1759 28 SALQILDGAKEEGFRTIAVCQRGREKPYEKFPV-----ADEVIIVDKFSDILNEEIQEELRELNAIFIPHGSFVAYVGYD 102 (361)
T ss_pred hHHHHhhhHHhcCCcEEEEEecCccchHHhhch-----hheEEEechhHHHhhHHHHHHHHHcCeEEecCCceEEEecch
Confidence 445677889999999998888 4555555521 3 33456667665 33444444431111 11111123
Q ss_pred HHH-HCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCH
Q 042131 93 KLE-QQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSE 171 (201)
Q Consensus 93 ~l~-~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~ 171 (201)
.++ +.-++.+.+...+++..|+...+.+|+++||+.|+ ..++++++. -|+|||... +.+|+|-+++.|.
T Consensus 103 ~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLekAgi~~P~--~~~~PeeId-------r~VIVK~pg-AkggRGyFiA~s~ 172 (361)
T COG1759 103 GIENEFEVPMFGNRELLRWEEDRKLEYKLLEKAGLRIPK--KYKSPEEID-------RPVIVKLPG-AKGGRGYFIASSP 172 (361)
T ss_pred hhhhcccCcccccHhHhhhhcchhhHHHHHHHcCCCCCc--ccCChHHcC-------CceEEecCC-ccCCceEEEEcCH
Confidence 233 34468899999999999999999999999999999 457887654 699999986 6699999999999
Q ss_pred HHHHHHHHHhcC-------CCCceEEeecCCCceee
Q 042131 172 EELSSAITALGG-------FDRSLYIEKWAPFVKVN 200 (201)
Q Consensus 172 ~el~~~~~~~~~-------~~~~~lvEe~i~G~e~s 200 (201)
+|+.+..+++.. .-..+.|||||-|..|.
T Consensus 173 eef~ek~e~l~~~gvi~~edlkna~IeEYv~G~~f~ 208 (361)
T COG1759 173 EEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFY 208 (361)
T ss_pred HHHHHHHHHHHHcCCcchhhhhhceeeEEeecccee
Confidence 999998887642 12458999999998764
No 86
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.04 E-value=9.5e-10 Score=89.88 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=58.3
Q ss_pred ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh--CC-CEEEeecCCCCCCCCeEEcCCHH
Q 042131 101 CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF--GY-PLMVKSKSLAYDGRGNAVAKSEE 172 (201)
Q Consensus 101 ~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~~-P~VvKp~~g~~~g~gv~~~~~~~ 172 (201)
..|+.+..-++.||..+..+|+++|||+|+++.+.+.+...+.+.++ ++ |+|+||..|+ .|+||.++++.+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs-~GrGI~~i~~~~ 98 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGS-GGKGILVITSRK 98 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCC-CccCeEEEEecc
Confidence 46788888899999999999999999999999888776544444444 56 6999999975 999999997653
No 87
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.99 E-value=6.9e-09 Score=96.42 Aligned_cols=114 Identities=19% Similarity=0.359 Sum_probs=89.1
Q ss_pred CCCHhhhh------cCCeEEe--ccccCCHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCc------
Q 042131 67 FELPVAVV------ACGVLTV--EIEHVDVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEF------ 131 (201)
Q Consensus 67 ~~d~~~l~------~~d~i~~--~~~~i~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~------ 131 (201)
|.+.+.+. .+|++.. ....-...+=+.|.+.|+ .++|...+++-+.||....-.++..|+|+.++
T Consensus 123 yANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~ 202 (2196)
T KOG0368|consen 123 YANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVK 202 (2196)
T ss_pred cccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcce
Confidence 44555554 5666642 211111244577888888 67999999999999999999999999999654
Q ss_pred --------------------cccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHh
Q 042131 132 --------------------MEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITAL 181 (201)
Q Consensus 132 --------------------~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~ 181 (201)
..+.+.+|-.++++.+|||+++|...|| ||||++.+++.||+...+++.
T Consensus 203 ~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGG-GGKGIRkv~n~ddF~~lf~qv 271 (2196)
T KOG0368|consen 203 VEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGG-GGKGIRKVENEDDFKALFKQV 271 (2196)
T ss_pred eeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCC-CCcceeeccchHHHHHHHHHH
Confidence 1234567778888999999999999988 999999999999999998764
No 88
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.98 E-value=2.1e-09 Score=83.92 Aligned_cols=90 Identities=24% Similarity=0.299 Sum_probs=58.9
Q ss_pred hCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC----CeEE-cCCHHHHHHHHHHhcC---
Q 042131 112 QDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR----GNAV-AKSEEELSSAITALGG--- 183 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~----gv~~-~~~~~el~~~~~~~~~--- 183 (201)
.+-...+++|..+|||+|++..+++.+++..+++++|||+++|-.+-...+| ||.+ ++|.+++.++++++..
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~ 89 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVA 89 (222)
T ss_dssp E-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999999999999999999999986433333 7886 9999999999987531
Q ss_pred ------CCCceEEeecCC--CceeeC
Q 042131 184 ------FDRSLYIEKWAP--FVKVNV 201 (201)
Q Consensus 184 ------~~~~~lvEe~i~--G~e~sv 201 (201)
....++||++++ |.|+.|
T Consensus 90 ~~~p~~~~~gvlVq~m~~~~g~El~v 115 (222)
T PF13549_consen 90 AHHPGARIDGVLVQEMAPSGGRELIV 115 (222)
T ss_dssp HH-TT----EEEEEE------EEEEE
T ss_pred HhCCCCccceEEEEEcccCCcEEEEE
Confidence 224799999998 877653
No 89
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.93 E-value=7.6e-10 Score=89.06 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=92.5
Q ss_pred hcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCc-------cccC--CCCHhhhh--------cCCeEEecc
Q 042131 22 RRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARP-------EVHN--FELPVAVV--------ACGVLTVEI 83 (201)
Q Consensus 22 ~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~-------~~~~--~~d~~~l~--------~~d~i~~~~ 83 (201)
...|.+++.|.++||+|+.++. .+...... +... ...+ ..|.+.|+ .+|+.+...
T Consensus 19 vntR~vveSA~klGf~V~sv~~y~~~Dl~~~-------a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~ 91 (389)
T COG2232 19 VNTRPVVESASKLGFEVYSVQYYDPADLPGD-------AISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPF 91 (389)
T ss_pred ecchHhHHHHHhcCeEEEEeEeecccccccc-------cceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeec
Confidence 3779999999999999999887 43332211 1111 1121 22333333 445532111
Q ss_pred ccCCHHHHHHHHHCCC-cccccHH-HHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC
Q 042131 84 EHVDVAIMEKLEQQGV-DCQPKAS-TIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 84 ~~i~~~~~~~l~~~g~-~~~~~~~-~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
.. .+.+..-.+.+. ..+++++ .+..+.||..+...++..|+|.|......-.++ -..++|+||+.|+ |
T Consensus 92 sg--~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e~~~~-------gekt~IlKPv~Ga-G 161 (389)
T COG2232 92 SG--FEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIEPLEE-------GEKTLILKPVSGA-G 161 (389)
T ss_pred cc--cccccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhhhhhh-------cceeeEEeeccCC-C
Confidence 11 111211112333 3477777 889999999999999999999998775532221 2368999999975 6
Q ss_pred CCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 162 GRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|. +-++.-.++.. +..+++||||+|.-+||
T Consensus 162 G~-~el~~~~Ee~~---------~~~~i~Qefi~G~p~Sv 191 (389)
T COG2232 162 GL-VELVKFDEEDP---------PPGFIFQEFIEGRPVSV 191 (389)
T ss_pred ce-eeecccccccC---------CcceehhhhcCCceeEE
Confidence 64 22222222211 24499999999999886
No 90
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.76 E-value=5.6e-08 Score=80.20 Aligned_cols=86 Identities=31% Similarity=0.403 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhC-CCEEEeecCCCCCCC----CeEEcCCHHHHHHHHHHhcC-----
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFG-YPLMVKSKSLAYDGR----GNAVAKSEEELSSAITALGG----- 183 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P~VvKp~~g~~~g~----gv~~~~~~~el~~~~~~~~~----- 183 (201)
.++.+++|.++|||+|+++++++.+++..++++++ .|+|+|+.--. ||+ ||++++|.+|..++.+.+.+
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~a-GGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~ 83 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHA-GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQT 83 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeee-cCccccCceEEeCCHHHHHHHHHHHhCccccc
Confidence 46778999999999999999999999999999998 79999998532 444 89999999999988887654
Q ss_pred -----CCCceEEeecCC-Cc-eee
Q 042131 184 -----FDRSLYIEKWAP-FV-KVN 200 (201)
Q Consensus 184 -----~~~~~lvEe~i~-G~-e~s 200 (201)
....+|||++++ -. ||.
T Consensus 84 ~~~G~~v~~vlvee~~~~~~~E~Y 107 (387)
T COG0045 84 DIKGEPVNKVLVEEAVDIIKKEYY 107 (387)
T ss_pred CcCCceeeEEEEEecCCCccceEE
Confidence 135899999998 44 553
No 91
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.70 E-value=5.9e-08 Score=78.78 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=68.5
Q ss_pred cccHHHHHHHhCHHHHHHHHhhCCCCCCCccc-----------cCCHHHHHHHHHHh-CCCEEEeecCCCCCCCCeEEcC
Q 042131 102 QPKASTIRIIQDKYIQKVHFSPHGIPLPEFME-----------VNDLESARRAGKQF-GYPLMVKSKSLAYDGRGNAVAK 169 (201)
Q Consensus 102 ~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-----------~~~~~~~~~~~~~~-~~P~VvKp~~g~~~g~gv~~~~ 169 (201)
.++.+...++.||..|++++.++|||+|+... ..+.+++.+++... ..++|+||..| ++|+||.++.
T Consensus 15 ~N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G-~~G~Gi~~i~ 93 (285)
T PF14397_consen 15 YNPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG-SGGKGILVID 93 (285)
T ss_pred cCchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC-CCccCEEEEE
Confidence 37888899999999999999999999999321 23567777777664 57899999996 5999999887
Q ss_pred CHH------HHHHHHHHhcC-CCCceEEeecCCCc
Q 042131 170 SEE------ELSSAITALGG-FDRSLYIEKWAPFV 197 (201)
Q Consensus 170 ~~~------el~~~~~~~~~-~~~~~lvEe~i~G~ 197 (201)
..+ +.......+.. ....+|+||+|.-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh 128 (285)
T PF14397_consen 94 RRDGSEINRDISALYAGLESLGGKDYLIQERIEQH 128 (285)
T ss_pred eecCcccccchhHHHHHHHhcCCccEEEEecccCC
Confidence 654 12222222211 11159999999754
No 92
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.66 E-value=3.7e-08 Score=76.86 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=96.0
Q ss_pred hcccccc----cccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCC--HhhhhcCCeEE---eccccCCHHHH
Q 042131 22 RRGRRFP----VDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFEL--PVAVVACGVLT---VEIEHVDVAIM 91 (201)
Q Consensus 22 ~~g~~l~----~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d--~~~l~~~d~i~---~~~~~i~~~~~ 91 (201)
..|+++. .+.++.|+.++.... .+.. ... ....+..+..+ .+.+..+|... .+.+..-..+.
T Consensus 21 ~EG~aMlesll~~F~~~~ve~y~~~~f~~~~-ig~-------~f~s~~~~~~~~~ek~le~~Da~LvIAPEdd~lLy~Lt 92 (307)
T COG1821 21 AEGRAMLESLLRAFAKSGVEVYETLTFADPS-IGV-------RFKSTADDVLRDEEKALEKADATLVIAPEDDGLLYSLT 92 (307)
T ss_pred HhHHHHHHHHHHHHHhcCceEEEeecccccc-cce-------eeecchhHHHHHHHHHHhcCCeeEEEecCcCChHHHHH
Confidence 3666444 556778977776655 2222 111 11111222222 12333677532 33344445555
Q ss_pred HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCH
Q 042131 92 EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSE 171 (201)
Q Consensus 92 ~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~ 171 (201)
..+++.-..++.|+++++.|.||+.+...|+.. +++|++..... .+--.|+||.+|. +|.|+....+.
T Consensus 93 ri~E~~~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~----------~~~k~ViKp~dgC-gge~i~~~~~~ 160 (307)
T COG1821 93 RIYEEYVENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWAE----------EPKKYVIKPADGC-GGEGILFGRDF 160 (307)
T ss_pred HHHHHHhHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc----------CCceEEecccccC-CcceeeccCCC
Confidence 666666236799999999999999999999988 99999874222 2234799999986 99999888776
Q ss_pred HHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 172 EELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 172 ~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.++ .++||||+|...||
T Consensus 161 pd~-------------~i~qEfIeG~~lSV 177 (307)
T COG1821 161 PDI-------------EIAQEFIEGEHLSV 177 (307)
T ss_pred cch-------------hhHHHhcCCcceEE
Confidence 552 68899999988775
No 93
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.66 E-value=1.5e-07 Score=72.44 Aligned_cols=83 Identities=34% Similarity=0.462 Sum_probs=60.1
Q ss_pred HHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCCCCCC----CeEEcCCHHHHHHHHHHhcCC----
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLAYDGR----GNAVAKSEEELSSAITALGGF---- 184 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~~~g~----gv~~~~~~~el~~~~~~~~~~---- 184 (201)
.+..+++|.++|||+|++.++++.+++..++++++.+ +|||+--.. ||+ ||.+++|.+|..++.+++.+.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~-GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T 82 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLA-GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKT 82 (202)
T ss_dssp HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSS-STTTTTTCEEEESSHHHHHHHHHTTTTSEEE-
T ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEee-cCcccCCceeecCCHHHHHHHHHHHhCCceEe
Confidence 3567899999999999999999999999999999875 799997543 554 799999999999988876421
Q ss_pred ---------CCceEEeecCCCc
Q 042131 185 ---------DRSLYIEKWAPFV 197 (201)
Q Consensus 185 ---------~~~~lvEe~i~G~ 197 (201)
...+|||++++-+
T Consensus 83 ~Qtg~~G~~v~~vlvee~v~~~ 104 (202)
T PF08442_consen 83 KQTGPKGEKVNKVLVEEFVDIK 104 (202)
T ss_dssp TTSTTTEEEE--EEEEE---CC
T ss_pred eecCCCCCEeeEEEEEecCccC
Confidence 1478999998754
No 94
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.63 E-value=2.6e-07 Score=78.24 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=69.6
Q ss_pred HHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCC-CCCC--CeEEcCCHHHHHHHHHHhcCC-----
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLA-YDGR--GNAVAKSEEELSSAITALGGF----- 184 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~-~~g~--gv~~~~~~~el~~~~~~~~~~----- 184 (201)
-+..+++|.++|||+|++.++++.+++.++++++|+| +|+|..... ..|+ ||.+..|.+|+.++++++.+.
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~ 84 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTH 84 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhh
Confidence 4566899999999999999999999999999999995 599974321 1233 799999999999999876432
Q ss_pred --------CCceEEeecCC-Cceee
Q 042131 185 --------DRSLYIEKWAP-FVKVN 200 (201)
Q Consensus 185 --------~~~~lvEe~i~-G~e~s 200 (201)
...++||++++ +.||.
T Consensus 85 ~~~~~g~~v~~vlVe~~~~~~~E~y 109 (392)
T PRK14046 85 QTGPEGKPVQRVYVETADPIERELY 109 (392)
T ss_pred ccCCCCCeeeeEEEEEecCCCcEEE
Confidence 13699999998 66664
No 95
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=98.50 E-value=5.2e-08 Score=87.68 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=125.0
Q ss_pred cccccccccccCCCeEEEECC--CCCc-ccccCCCCCCCCCCccccC-CCC-Hhhhh---cCCeEEeccccC-----CHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS--GAIA-ARGISPPPLLDSARPEVHN-FEL-PVAVV---ACGVLTVEIEHV-----DVA 89 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~--~~~~-~~~~~~~~~~~a~~~~~~~-~~d-~~~l~---~~d~i~~~~~~i-----~~~ 89 (201)
+|...++|+|+.|+.++++.+ ...- ...+ +|..+... ... ...+. ..|.+...+++- +.+
T Consensus 399 SGsQAiKAlkEe~i~TiLiNPNIAtvQts~~l-------AD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgve 471 (1435)
T KOG0370|consen 399 SGSQAIKALKEENIFTILINPNIATVQTSKGL-------ADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVE 471 (1435)
T ss_pred eHHHHHHhhhhcccEEEEECCccccccccccc-------ceEEEEeecCHHHHHHHHHhhCCCeEEEecCCcccccccee
Confidence 466888999999999999987 2111 1123 55543322 222 22222 666665444431 222
Q ss_pred HHH--HHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 90 IME--KLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 90 ~~~--~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
+-+ .+++.|++ ++.+.+++....|+..+.+.+++.+.+..++..+++.+++.++++.++||+|++... +-||.|--
T Consensus 472 l~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~l~ypvivRaay-algglgSg 550 (1435)
T KOG0370|consen 472 LDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAERLGYPVIVRAAY-ALGGLGSG 550 (1435)
T ss_pred eeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHhHHHHHHHHHHhcCcHHHHHHHH-HhcCcccc
Confidence 222 45666773 578889999999999999999999999999999999999999999999999999988 45888888
Q ss_pred EcCCHHHHHHHHHHhcCCCCceEEeecCCC
Q 042131 167 VAKSEEELSSAITALGGFDRSLYIEKWAPF 196 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~~~~~~lvEe~i~G 196 (201)
.+.|++||.+..........++|||+-+.|
T Consensus 551 fa~n~eeL~~l~~~a~a~s~QilvekSlkG 580 (1435)
T KOG0370|consen 551 FANNEEELQDLAAQALALSPQILVEKSLKG 580 (1435)
T ss_pred ccccHHHHHHHHhhccccCceeeehhhhcc
Confidence 999999999988877766778999998886
No 96
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=98.48 E-value=6.3e-07 Score=76.34 Aligned_cols=166 Identities=12% Similarity=0.020 Sum_probs=100.6
Q ss_pred CCchhhhhc---------ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEE
Q 042131 15 PSPTIHCRR---------GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLT 80 (201)
Q Consensus 15 ~~~~i~~~~---------g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~ 80 (201)
.+|.|+|+. -..+.+...+.|+.+++++. ... + .+.....+..-++.+. -.+++.
T Consensus 184 ~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~~L~----y-------~~g~L~~~~~~ID~VyRR~Vt~e~l~ 252 (445)
T PF14403_consen 184 EKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPRDLE----Y-------RDGRLYAGGRPIDAVYRRFVTSELLE 252 (445)
T ss_pred CCCcEEEEecccCCccchHHHHHHHHHHcCCceEecChHHce----e-------cCCEEEECCEeeehhhHhhhhHHhhh
Confidence 378888752 13677788899999999987 221 1 1111122222233332 111110
Q ss_pred eccccCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCC-------------CCCccccCC--------HHH
Q 042131 81 VEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIP-------------LPEFMEVND--------LES 139 (201)
Q Consensus 81 ~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip-------------~p~~~~~~~--------~~~ 139 (201)
.-+-...+++...+. ..+.-++-..+++.||..|.-+-....-. +|.|..++. ..+
T Consensus 253 --~~d~~~~li~Ay~~~-av~~vgsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~d 329 (445)
T PF14403_consen 253 --RYDEVQPLIQAYRDG-AVCMVGSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVD 329 (445)
T ss_pred --ccccchHHHHHHhcC-CeEEecchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchh
Confidence 001113344544433 33445556778888888887555443322 577777766 334
Q ss_pred HHHHHHHhCCCEEEeecCCCCCCCCeE--EcCCHHHHHHHHHHhcCCCCceEEeecCCCc
Q 042131 140 ARRAGKQFGYPLMVKSKSLAYDGRGNA--VAKSEEELSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 140 ~~~~~~~~~~P~VvKp~~g~~~g~gv~--~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
+.+.+....=-+|+||.+ +|||+||+ .-.+.++.+++++++.+.+ +|+|||+.=+
T Consensus 330 L~~~~~a~r~~lVLKP~D-~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~--yilQe~v~~~ 386 (445)
T PF14403_consen 330 LVEFAIANRDRLVLKPND-EYGGKGVYIGWETSPEEWEAALEEAAREP--YILQEYVRPP 386 (445)
T ss_pred HHHHHHhchhcEEecccc-ccCCCCeEECCcCCHHHHHHHHHHHhcCC--cEEEEEecCC
Confidence 444443334468999999 58999999 5668899999999977666 9999998653
No 97
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.47 E-value=4.6e-07 Score=68.08 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=46.3
Q ss_pred CCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCH-HHHHHHHHHhcC-CCCceEEeecCCC
Q 042131 128 LPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSE-EELSSAITALGG-FDRSLYIEKWAPF 196 (201)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~-~el~~~~~~~~~-~~~~~lvEe~i~G 196 (201)
+|++.+..+.+++.++.++.+. +|+||..| +||+||++++.. ..+...++.+.. ....+++|+|++.
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~-~VlKPl~g-~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~ 80 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGD-IVLKPLDG-MGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPE 80 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSS-EEEEESS---TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GG
T ss_pred CcCEEEECCHHHHHHHHHHCCC-EEEEECCC-CCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecccc
Confidence 5899999999999999999998 99999996 599999988874 456666665542 3345999999974
No 98
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.46 E-value=1.3e-06 Score=74.45 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=65.9
Q ss_pred hCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh---CCCEEEeec--CCCCCC---------CCeEEcCCHHHHHHH
Q 042131 112 QDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF---GYPLMVKSK--SLAYDG---------RGNAVAKSEEELSSA 177 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~---~~P~VvKp~--~g~~~g---------~gv~~~~~~~el~~~ 177 (201)
-.-+..+++|+++|||+|++.++++.+++.++++++ ++|+|+|+. .|| .| -||.++++ +|+.++
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GG-RGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGG-RGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCC-ccccccccccCCeEEECCH-HHHHHH
Confidence 346677899999999999999999999999999998 699999998 433 33 24778877 999998
Q ss_pred HHHhcCC-------------CCceE-EeecCCCceee
Q 042131 178 ITALGGF-------------DRSLY-IEKWAPFVKVN 200 (201)
Q Consensus 178 ~~~~~~~-------------~~~~l-vEe~i~G~e~s 200 (201)
++++.+. ...++ .|+...+.||.
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~y 144 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMY 144 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEE
Confidence 8876432 12466 45555566664
No 99
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.39 E-value=6.2e-07 Score=73.08 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=85.3
Q ss_pred cccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc--CCHHHHHHHHHCC-Ccc
Q 042131 25 RRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH--VDVAIMEKLEQQG-VDC 101 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~--i~~~~~~~l~~~g-~~~ 101 (201)
..+...|++.|+..+-+|....-..+- ..|++.....+ +-..+-+.++++- +.+
T Consensus 25 ~~~~~~~~~~gi~~v~id~~~pl~~Qg-----------------------pfDvIlHKltd~~~~~~l~~y~~~hP~v~v 81 (307)
T PF05770_consen 25 PSFIDLARSRGIDFVPIDLSKPLEEQG-----------------------PFDVILHKLTDEDWVQQLEEYIKKHPEVVV 81 (307)
T ss_dssp CHHCCCCCCCTTEEEEEECCSSSGCC-------------------------SCEEEE--CHCHHHHHHHHHHHH-TTSEE
T ss_pred HHHHHHHHhcCCEEEEcCCCCCcccCC-----------------------CcEEEEEeCCCHHHHHHHHHHHHHCCCeEE
Confidence 467778899999999998611111111 23454422111 1123334455553 466
Q ss_pred cccHHHHHHHhCHHHHHHHHhhC-------CCCCCCccccC-CHHHHHHHH--HHhCCCEEEeecCC--CCCCCCeEEcC
Q 042131 102 QPKASTIRIIQDKYIQKVHFSPH-------GIPLPEFMEVN-DLESARRAG--KQFGYPLMVKSKSL--AYDGRGNAVAK 169 (201)
Q Consensus 102 ~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~VvKp~~g--~~~g~gv~~~~ 169 (201)
..++++++.+.|+..+.+.+++. .+.+|++..+. +.+++.+.. +.+.||+|+||... +.++..+.++.
T Consensus 82 iDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf 161 (307)
T PF05770_consen 82 IDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVF 161 (307)
T ss_dssp ET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-
T ss_pred EcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEE
Confidence 78889999999999999988764 67789988877 444444443 35789999999973 22344788999
Q ss_pred CHHHHHHHHHHhcCCCCceEEeecCCC
Q 042131 170 SEEELSSAITALGGFDRSLYIEKWAPF 196 (201)
Q Consensus 170 ~~~el~~~~~~~~~~~~~~lvEe~i~G 196 (201)
+++.|.+. ..+ +++||||+-
T Consensus 162 ~~~gL~~L-----~~P--~VlQeFVNH 181 (307)
T PF05770_consen 162 NEEGLKDL-----KPP--CVLQEFVNH 181 (307)
T ss_dssp SGGGGTT-------SS--EEEEE----
T ss_pred CHHHHhhc-----CCC--EEEEEeecC
Confidence 99997652 346 999999974
No 100
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.24 E-value=7.9e-06 Score=69.12 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=64.6
Q ss_pred HHHHHHHhhC-----CCCCCCcccc-CCHHHHHHHHHH---hCCC-EEEeecCCCCCCC----CeEEcCCHHHHHHHHHH
Q 042131 115 YIQKVHFSPH-----GIPLPEFMEV-NDLESARRAGKQ---FGYP-LMVKSKSLAYDGR----GNAVAKSEEELSSAITA 180 (201)
Q Consensus 115 ~~~~~~l~~~-----gip~p~~~~~-~~~~~~~~~~~~---~~~P-~VvKp~~g~~~g~----gv~~~~~~~el~~~~~~ 180 (201)
+.-+++|.++ |||+|+..++ ++.+++.+++++ ++.| +|||+.... ||+ ||.+++|.+|+.+..++
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~-GgRGKaGGVk~~~s~~Ea~~~a~~ 87 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLF-GKRGKSGLVALNLDLAQVATFVKE 87 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEccccc-CCCcccCceEEeCCHHHHHHHHHH
Confidence 4456777777 9999999888 999999998887 7664 699998653 555 79999999999999887
Q ss_pred hcCCC----------CceEEeecCCC
Q 042131 181 LGGFD----------RSLYIEKWAPF 196 (201)
Q Consensus 181 ~~~~~----------~~~lvEe~i~G 196 (201)
+.+.. ..+|||++++-
T Consensus 88 ~Lg~~l~t~g~~G~v~~vLVEe~v~i 113 (423)
T PLN02235 88 RLGKEVEMGGCKGPITTFIVEPFVPH 113 (423)
T ss_pred HhCCceEecCCCccEeEEEEEecCCC
Confidence 65322 37899999865
No 101
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.18 E-value=1.4e-05 Score=64.17 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=72.7
Q ss_pred HHCCCcccccHHHHHHHhCHHHHHHHHhhCC-CC--CCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcC--
Q 042131 95 EQQGVDCQPKASTIRIIQDKYIQKVHFSPHG-IP--LPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAK-- 169 (201)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~g-ip--~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~-- 169 (201)
++.|+++++. .+.||+.+.++|.+.. +. .|+|..+++.+++.+++++.+ -+.|||..|+ .|+||..++
T Consensus 5 ~~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~-~vylKP~~Gs-~G~gI~ri~~~ 77 (262)
T PF14398_consen 5 KQKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK-SVYLKPDNGS-KGKGIIRIEKK 77 (262)
T ss_pred hcCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC-EEEEEeCCCC-CCccEEEEEEe
Confidence 3456766665 2589999999998763 44 499999999999999999886 4999999975 899988655
Q ss_pred --------------------CHHHHHHHHHHhcCCCCceEEeecCCCcee
Q 042131 170 --------------------SEEELSSAITALGGFDRSLYIEKWAPFVKV 199 (201)
Q Consensus 170 --------------------~~~el~~~~~~~~~~~~~~lvEe~i~G~e~ 199 (201)
+.+++...+..... ...+|||+.|+-..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~yIiQq~I~l~~~ 126 (262)
T PF14398_consen 78 GGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLG-KRRYIIQQGIPLATY 126 (262)
T ss_pred CCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcC-CCcEEEeCCcccccc
Confidence 44566666655432 335999999975543
No 102
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.04 E-value=0.00012 Score=51.26 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=60.0
Q ss_pred cccccccccCCCeEEEECC-C-CCcccccCCCCCCCCCCcccc-CCCCH------hhhhcCCeEEecccc-CCHHHHHHH
Q 042131 25 RRFPVDRPLKDSRLWELDS-G-AIAARGISPPPLLDSARPEVH-NFELP------VAVVACGVLTVEIEH-VDVAIMEKL 94 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~-~~~~~~~~~~~~~~a~~~~~~-~~~d~------~~l~~~d~i~~~~~~-i~~~~~~~l 94 (201)
-.+..-|++.|+++++++. . ..++.++.. +|+.++. ++.|. +.+..-+++...... +..-..+.+
T Consensus 10 LqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~-----iDe~i~~d~f~di~~~~~q~~L~~~N~I~VPhgSfv~Y~G~d~i 84 (124)
T PF06849_consen 10 LQILDGAKDEGFRTIAICQKGREKFYRRFPF-----IDEVIVLDSFSDILSEEVQEKLREMNAIFVPHGSFVAYVGYDRI 84 (124)
T ss_dssp HHHHHHHHHTT--EEEEEETTCHHHHHTTTT------SEEEEESSCGHCCSHHHHHHHHHTTEEE--BTTHHHHH-HHHH
T ss_pred HHHhhhHHHcCCcEEEEECCCCcchhhhcCc-----CcEEEEeCCHHHHHhHHHHHHHHHCCeEEecCCCeeEeecHHHH
Confidence 3566779999999999988 3 334444421 6666553 35442 333355555322211 111224667
Q ss_pred HH-CCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc
Q 042131 95 EQ-QGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM 132 (201)
Q Consensus 95 ~~-~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~ 132 (201)
++ .-++++.|...+++..|+...+++|+++|||.|+..
T Consensus 85 e~~~~vP~FGNR~lLrwEseR~~~~~lL~~AgI~~P~~~ 123 (124)
T PF06849_consen 85 ENEFKVPIFGNRNLLRWESERDKERNLLEKAGIPMPRKF 123 (124)
T ss_dssp HHT-SS-EES-CCGGHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred hhcCCCCeecChHHHHhhhhhhhHHHHHHHcCCCCCccC
Confidence 76 667889999999999999999999999999999853
No 103
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=96.81 E-value=0.00057 Score=47.58 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=51.1
Q ss_pred cccccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCccc-------cCCCCHhhhh------cCCeEEe--ccccC
Q 042131 25 RRFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPEV-------HNFELPVAVV------ACGVLTV--EIEHV 86 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~d~i~~--~~~~i 86 (201)
.+++++++++|++++++.+ ++.... .. +|+.+. ..|.+.+.+. .++.+.. .+...
T Consensus 15 ~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~-------ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse 87 (110)
T PF00289_consen 15 VRIIRALRELGIETVAVNSNPDTVSTHVDM-------ADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSE 87 (110)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTGHHHHH-------SSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTT
T ss_pred HHHHHHHHHhCCcceeccCchhcccccccc-------cccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHH
Confidence 4778899999999999988 554432 33 555433 3467777776 5566652 23333
Q ss_pred CHHHHHHHHHCCC-cccccHHHH
Q 042131 87 DVAIMEKLEQQGV-DCQPKASTI 108 (201)
Q Consensus 87 ~~~~~~~l~~~g~-~~~~~~~~~ 108 (201)
..++.+.+++.|+ .++|+++++
T Consensus 88 ~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 88 NAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHHHHHHHHTT-EESSS-HHHH
T ss_pred HHHHHHHHHHCCCEEECcChHhC
Confidence 4677888889998 679998875
No 104
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=96.28 E-value=0.013 Score=46.54 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=58.1
Q ss_pred ccHHHHHHHhCHHHHHHHHhhCC---CCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHH---HH
Q 042131 103 PKASTIRIIQDKYIQKVHFSPHG---IPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL---SS 176 (201)
Q Consensus 103 ~~~~~~~~~~dK~~~~~~l~~~g---ip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el---~~ 176 (201)
........+.||...|+++++.+ .-+|-..+.++.+++.- ..+.-++|||+..|+ |+..|..-.+..+. ..
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~~--~~Lp~~fViK~nhgs-g~~~i~~dk~~~d~~~~~~ 86 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDIDF--DSLPDKFVIKPNHGS-GSNIIVRDKSKLDIEEAKK 86 (239)
T ss_pred CCCccceecchHHHHHHHHHHhCCCceECceeecCCChhhhhh--hcCCCCEEEEEecCC-CcEEEEeCCcccCHHHHHH
Confidence 33445667899999999999886 33455666777777652 456678999999853 54455554433332 22
Q ss_pred HHHHh-c-------------CCCCceEEeecCCCc
Q 042131 177 AITAL-G-------------GFDRSLYIEKWAPFV 197 (201)
Q Consensus 177 ~~~~~-~-------------~~~~~~lvEe~i~G~ 197 (201)
.+... . +-...+++|+++.-.
T Consensus 87 ~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~ 121 (239)
T PF14305_consen 87 KLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDE 121 (239)
T ss_pred HHHHHhhhccccccccccCcCCCceEEEEeccccC
Confidence 22221 0 112479999998754
No 105
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=96.11 E-value=0.0056 Score=49.81 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=24.0
Q ss_pred CEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCC
Q 042131 150 PLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF 196 (201)
Q Consensus 150 P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G 196 (201)
-+|+||..++ .|+|++++++.+++... .......++||+||+-
T Consensus 67 ~wI~KP~~~~-rG~GI~l~~~~~~i~~~---~~~~~~~~vvQkYI~~ 109 (292)
T PF03133_consen 67 LWIVKPSNGS-RGRGIKLFNNLEQILRF---SKNKNQPYVVQKYIEN 109 (292)
T ss_dssp -EEEEES--------EEEES-HHHHHCC---HCCTTS-EEEEE--SS
T ss_pred EEEEeccccC-CCCCceecCCHHHHHHH---hhhhhhhhhhhhccCC
Confidence 4899999864 89999999999987753 1233456999999973
No 106
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.10 E-value=0.049 Score=45.19 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=54.0
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhC-CCEEEeecCCCCCC-----------CCeEEcCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFG-YPLMVKSKSLAYDG-----------RGNAVAKSEEELSSAITA 180 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P~VvKp~~g~~~g-----------~gv~~~~~~~el~~~~~~ 180 (201)
.-+.-.++|.++|+.+|+.++..|.||+...+++++ -.+|||...-+ || .||.++.+++|.+..-..
T Consensus 26 hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lA-gGRgKGtF~SglkgGV~iVf~p~Eak~va~q 104 (434)
T KOG2799|consen 26 HEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLA-GGRGKGTFDSGLKGGVKIVFSPQEAKAVASQ 104 (434)
T ss_pred HHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecc-cCcccCCcCcCcCCceEEEeChHHHHHHHHH
Confidence 334447899999999999999999999999999986 56999987432 22 189999999887776655
Q ss_pred h
Q 042131 181 L 181 (201)
Q Consensus 181 ~ 181 (201)
+
T Consensus 105 m 105 (434)
T KOG2799|consen 105 M 105 (434)
T ss_pred h
Confidence 4
No 107
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.08 E-value=0.024 Score=46.64 Aligned_cols=68 Identities=28% Similarity=0.336 Sum_probs=52.2
Q ss_pred CCCccccCCHHHHHHHHHHh--CCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC---CCCceEEeecCCC
Q 042131 128 LPEFMEVNDLESARRAGKQF--GYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG---FDRSLYIEKWAPF 196 (201)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~--~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~---~~~~~lvEe~i~G 196 (201)
+-+.+.+.|.+++..+.+.+ +-|+=+||+.+. +|+|+.++.+.++|+.++..+.. ....+++|+=++-
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~-gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~ 186 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRDGPVRLKPVHAT-GGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEE 186 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhccCCeeeccCccc-CCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCC
Confidence 44567788899998877664 579999999964 99999999999999999987542 1223677775543
No 108
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=95.20 E-value=0.082 Score=40.29 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=48.9
Q ss_pred ccHHHHHHHhCHHHH-HHH------HhhCCCCCCC-ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHH
Q 042131 103 PKASTIRIIQDKYIQ-KVH------FSPHGIPLPE-FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174 (201)
Q Consensus 103 ~~~~~~~~~~dK~~~-~~~------l~~~gip~p~-~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el 174 (201)
||.+++..+.||-.. .++ |-.-.+|..+ ++..+.. + +.....||+|||--.. .+|.|=.+++|..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~-e---m~s~~~fPvVvKvG~~-h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHR-E---MLSAPRFPVVVKVGHA-HAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGG-G---GCS-SSSSEEEEESS--STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChh-h---hccCCCCCEEEEEccc-cCceeEEEEccHHHH
Confidence 355666677776432 222 2223455533 3333332 2 2233579999999764 589999999999998
Q ss_pred HHHHHHhcCCCCceEEeecCCC
Q 042131 175 SSAITALGGFDRSLYIEKWAPF 196 (201)
Q Consensus 175 ~~~~~~~~~~~~~~lvEe~i~G 196 (201)
.+...-+......+.+|+||+-
T Consensus 76 qDi~sll~~~~~Y~T~EPfId~ 97 (203)
T PF02750_consen 76 QDIASLLAITKDYATTEPFIDA 97 (203)
T ss_dssp HHHHHHHHHHTS-EEEEE---E
T ss_pred HHHHHHHHhcCceEEeeccccc
Confidence 8776655433445889999963
No 109
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=0.18 Score=41.83 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHHCCCcccccHHHHHHHhCHHHH-HHH---HhhCC---CCCCC-ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 93 KLEQQGVDCQPKASTIRIIQDKYIQ-KVH---FSPHG---IPLPE-FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 93 ~l~~~g~~~~~~~~~~~~~~dK~~~-~~~---l~~~g---ip~p~-~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
-+...|++..++..++-.+.||-.. +++ ....| +|..+ ++.-++.+ ....-.||+|||--.+ ..|.|
T Consensus 180 g~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK~----m~s~~tyPvVVkvgha-hsGmG 254 (488)
T KOG3895|consen 180 GLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHKE----MLSQPTYPVVVKVGHA-HSGMG 254 (488)
T ss_pred HHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCchh----hccCCCCcEEEEeccc-ccccc
Confidence 4566788888999888888887543 333 34445 55433 33334322 2233459999999874 58999
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCCC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAPF 196 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G 196 (201)
-.+++|.+|+.+.-....-.....-+|.||+.
T Consensus 255 KiKV~Nh~dfqDi~svval~~Tyat~epFiDa 286 (488)
T KOG3895|consen 255 KIKVENHEDFQDIASVVALTKTYATAEPFIDA 286 (488)
T ss_pred eeeecchhhhHhHHHHHHHHhhhhhccccccc
Confidence 99999999987655443222223667777763
No 110
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.11 Score=44.31 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=56.3
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE--EcCCHHHHHHHHHHhcCCCCceEEeecCC
Q 042131 122 SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA--VAKSEEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 122 ~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~--~~~~~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
++.-+|.++|+-|...++....+..+. -+||||+.|+ ||.|.. -.-+++|+.+..+++...+.+++.|+-+.
T Consensus 340 e~~lL~nv~T~~c~~~~el~~VL~~l~-~lViK~~~~~-gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~ 413 (488)
T COG2308 340 EEPLLPNVPTYWCGEPDELEHVLANLS-ELVIKPVEGS-GGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQ 413 (488)
T ss_pred cccccCCCCeeecCCHHHHHHHHhchh-hheEeeeccC-CCCcceeccccCHHHHHHHHHHHHhChhhhccccccc
Confidence 566789999999999999999888876 5899999975 554433 66688888888888776666688887654
No 111
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=93.22 E-value=0.54 Score=42.96 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred cCCeEE-eccccCCHHHH-HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCH---HHHHHHHH----
Q 042131 75 ACGVLT-VEIEHVDVAIM-EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDL---ESARRAGK---- 145 (201)
Q Consensus 75 ~~d~i~-~~~~~i~~~~~-~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~---~~~~~~~~---- 145 (201)
.||.+. +-..+.+-+-+ ++..-.+-.+.++...-.++.|+-...+.|+..||++|++..++.. .+...+++
T Consensus 90 ~CdcLIsFhSsGFPLdKAiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~ 169 (1018)
T KOG1057|consen 90 LCDCLISFHSKGFPLDKAVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDH 169 (1018)
T ss_pred ccceEEEeccCCCChHHHHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCe
Confidence 555543 33334443333 3333333346788888889999999999999999999998876532 22333332
Q ss_pred ------HhCCCEEEeecCCCCCCCCeEEcC------CHHHHHHHHHHhc---------CCCCceEEeecCCCc
Q 042131 146 ------QFGYPLMVKSKSLAYDGRGNAVAK------SEEELSSAITALG---------GFDRSLYIEKWAPFV 197 (201)
Q Consensus 146 ------~~~~P~VvKp~~g~~~g~gv~~~~------~~~el~~~~~~~~---------~~~~~~lvEe~i~G~ 197 (201)
-|..|+|=||++| .-..|++-. ....|.+.+..-. ...+.++.|||++-+
T Consensus 170 vEVnGevf~KPFVEKPVs~--EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptd 240 (1018)
T KOG1057|consen 170 VEVNGEVFQKPFVEKPVSA--EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTD 240 (1018)
T ss_pred EEEcceeccCCcccCCCCc--ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCC
Confidence 2568999999984 334555433 1223333332110 123569999999754
No 112
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=92.99 E-value=0.15 Score=42.33 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=40.9
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHH-HHHHHHHHhcCCCCceEEe
Q 042131 122 SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEE-ELSSAITALGGFDRSLYIE 191 (201)
Q Consensus 122 ~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~-el~~~~~~~~~~~~~~lvE 191 (201)
++.-++..+|+.+.+.++.....+.+. -+|+||++| ++|+|+++-.... |..+.++++...+..|+.|
T Consensus 262 eellL~~VpT~~cg~~~~~~~Vl~~l~-~lvvKp~~g-~gg~~~~~G~~~s~e~~~~~~~I~~~P~~yVAQ 330 (330)
T PF04174_consen 262 EELLLPNVPTWWCGDPEDREYVLANLD-ELVVKPADG-YGGKGVYIGPKLSAERRALRAEILARPHRYVAQ 330 (330)
T ss_dssp S--SSEE---EETTSHHHHHHHHHSGG-GEEEEE---------EEEGGG--HHHHHHHHHHHHSGGGEEEE
T ss_pred CCcccCCCCcEeCCCHHHHHHHHhchh-hcEEEecCC-CCCCcceeCCcCCHHHHHHHHHHHhCccCCccC
Confidence 566778888999999999988888876 599999996 5999998654332 7777777776555567766
No 113
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=90.11 E-value=1 Score=24.78 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHHHHHhhCCCCCCCccccCCHHHHHHHHHH
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQ 146 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 146 (201)
...++.+|..+||++++.. .+.+++.+.+.+
T Consensus 6 ~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence 3567889999999999877 788888776543
No 114
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=89.34 E-value=1.6 Score=36.70 Aligned_cols=47 Identities=21% Similarity=0.082 Sum_probs=33.3
Q ss_pred CC-EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc---------CCCCceEEeecCCC
Q 042131 149 YP-LMVKSKSLAYDGRGNAVAKSEEELSSAITALG---------GFDRSLYIEKWAPF 196 (201)
Q Consensus 149 ~P-~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~---------~~~~~~lvEe~i~G 196 (201)
-| +|||.-.|. =|.||..++|.+|+...=.+-. ...++++|||=|.-
T Consensus 257 ~PfViVKADaGT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T 313 (403)
T TIGR02049 257 QPYVIVKADAGT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 313 (403)
T ss_pred CCeEEEEcCCCC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence 35 699999876 5999999999999876443211 12357899885543
No 115
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=85.75 E-value=2.7 Score=33.94 Aligned_cols=67 Identities=22% Similarity=0.400 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCCCCC--C---------CeEEcCCHHHHHHHHHHh
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLAYDG--R---------GNAVAKSEEELSSAITAL 181 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~~~g--~---------gv~~~~~~~el~~~~~~~ 181 (201)
.++.+++|+++|+.+-++.+.++..+..+.+..++-| .|+|....+ || + ||++..+.....++.+.+
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILA-GGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qM 102 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILA-GGRGKGVFNNGLKGGVHITKDKNVVLQLAKQM 102 (412)
T ss_pred HhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeee-cCcccceecCCccceeEEecCHhHHHHHHHHH
Confidence 3456789999999999999999999988888888755 689986432 33 2 577888888877776654
No 116
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=1 Score=39.46 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=33.8
Q ss_pred CCcc-ccCCHHHHHHHHHH-hCCCEEEeecCCCCCCCCeEEcCCHHHH
Q 042131 129 PEFM-EVNDLESARRAGKQ-FGYPLMVKSKSLAYDGRGNAVAKSEEEL 174 (201)
Q Consensus 129 p~~~-~~~~~~~~~~~~~~-~~~P~VvKp~~g~~~g~gv~~~~~~~el 174 (201)
|+++ +-.+.+++++..++ -.--+||||..++ .|.||++++.-.++
T Consensus 284 PrtyilP~d~e~lrk~w~~nasr~wIVkppasa-Rg~gIrv~~kw~q~ 330 (662)
T KOG2156|consen 284 PRTYILPADREELRKYWEKNASRLWIVKPPASA-RGIGIRVINKWSQF 330 (662)
T ss_pred ceeeeccccHHHHHHHHhhCccccEEecCcccc-cCcceEeccchhhC
Confidence 6655 55888999887765 2233899999865 89999999887663
No 117
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.68 E-value=6.4 Score=34.19 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=31.7
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHH
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEE 173 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~e 173 (201)
+..-....++.+..+.+.-++|+||-.| +.|+|++++++..+
T Consensus 209 w~lPa~l~df~a~~~~~KrtfivkpDsg-aqg~giylisDir~ 250 (565)
T KOG2158|consen 209 WRLPAPLCDFPASTEIMKRTFIVKPDSG-AQGSGIYLISDIRE 250 (565)
T ss_pred ccCchHHHHHHHHHHHhcccEEECCCCC-CCCcceeeechhhh
Confidence 3455666777777777778999999885 59999999865543
No 118
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=78.49 E-value=0.073 Score=44.01 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=52.6
Q ss_pred HHHHHHHHCCCc--ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc-cCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 89 AIMEKLEQQGVD--CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME-VNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 89 ~~~~~l~~~g~~--~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
.++..+...+.. .........++.+|..++..+++.++..|.-.- ......+..+++.+|+|.+.||+.++ .+.++
T Consensus 25 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~S-a~~md 103 (317)
T COG1181 25 AVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLAS-AGAMD 103 (317)
T ss_pred HHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhh-hhccc
Confidence 344555544431 223334677788888888999999988877443 34556667778889999999999964 55554
Q ss_pred E
Q 042131 166 A 166 (201)
Q Consensus 166 ~ 166 (201)
.
T Consensus 104 k 104 (317)
T COG1181 104 K 104 (317)
T ss_pred H
Confidence 4
No 119
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=74.01 E-value=1.4 Score=31.09 Aligned_cols=21 Identities=0% Similarity=0.078 Sum_probs=16.5
Q ss_pred cccccccccccCCCeEEEECC
Q 042131 23 RGRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~ 43 (201)
++-.|+.+|+++||+++.+..
T Consensus 19 TT~alm~eAq~RGhev~~~~~ 39 (119)
T PF02951_consen 19 TTFALMLEAQRRGHEVFYYEP 39 (119)
T ss_dssp HHHHHHHHHHHTT-EEEEE-G
T ss_pred hHHHHHHHHHHCCCEEEEEEc
Confidence 556789999999999999876
No 120
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=71.78 E-value=1.8 Score=36.57 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=25.8
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHH----Hh---cC--CCCceEEeecCCC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAIT----AL---GG--FDRSLYIEKWAPF 196 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~----~~---~~--~~~~~lvEe~i~G 196 (201)
++||.-.|. -|.||..++|.+|+...=. ++ .+ ..+.+||||=|.-
T Consensus 263 V~VKAD~GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T 316 (404)
T PF08886_consen 263 VFVKADAGT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYT 316 (404)
T ss_dssp EEEEEE-GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE----
T ss_pred EEEEcCCCC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcch
Confidence 699999876 5999999999999743221 12 11 2357999986543
No 121
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=68.37 E-value=7.6 Score=32.02 Aligned_cols=45 Identities=4% Similarity=-0.187 Sum_probs=30.7
Q ss_pred cccccccccCCCeEEEECC-CCCcccccCCCCCCCC-CCccccCCCCHhhhh
Q 042131 25 RRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDS-ARPEVHNFELPVAVV 74 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a-~~~~~~~~~d~~~l~ 74 (201)
...+.++.+.||+|+++|+ .+.....+.. . -.++..|..|.+.+.
T Consensus 14 SHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~-----~~~~f~~gDi~D~~~L~ 60 (329)
T COG1087 14 SHTVRQLLKTGHEVVVLDNLSNGHKIALLK-----LQFKFYEGDLLDRALLT 60 (329)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCHHHhhh-----ccCceEEeccccHHHHH
Confidence 3566778889999999999 6655444410 1 246677888876665
No 122
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=66.65 E-value=44 Score=23.83 Aligned_cols=91 Identities=9% Similarity=-0.028 Sum_probs=47.0
Q ss_pred cccccccCCCeEEEECC-CCCccc-ccCCCCCCCCCCccccCCCCHh-hhh-----cCCeEEeccccCCHHHHHHHHHCC
Q 042131 27 FPVDRPLKDSRLWELDS-GAIAAR-GISPPPLLDSARPEVHNFELPV-AVV-----ACGVLTVEIEHVDVAIMEKLEQQG 98 (201)
Q Consensus 27 l~~aa~~~G~~v~~~~~-~~~~~~-~~~~~~~~~a~~~~~~~~~d~~-~l~-----~~d~i~~~~~~i~~~~~~~l~~~g 98 (201)
+.+.|++.|++++++.+ ...... .. ....++..-.|.. ..+ .-|++.+. +..++..+-..|
T Consensus 2 i~~~a~r~~i~vi~Van~~h~~~~~~~-------~~~i~Vd~g~DaaD~~I~~~~~~gDiVITq----DigLA~~~l~Kg 70 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYSHRLPRSPY-------VEMIVVDSGFDAADFYIVNHAKPGDIVITQ----DIGLASLLLAKG 70 (130)
T ss_pred HHHHHHHHCCEEEEEeCCCccCCCCCC-------eEEEEECCCCChHHHHHHHcCCCCCEEEEC----CHHHHHHHHHCC
Confidence 45678999999999987 422211 22 2333344444432 222 44554321 234556555566
Q ss_pred Ccc-cc-----cHHHHHHHhCHHHHHHHHhhCCCCC
Q 042131 99 VDC-QP-----KASTIRIIQDKYIQKVHFSPHGIPL 128 (201)
Q Consensus 99 ~~~-~~-----~~~~~~~~~dK~~~~~~l~~~gip~ 128 (201)
..+ .+ +.+.+....+.-.+.+-+.+.|..+
T Consensus 71 a~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~ 106 (130)
T PF02639_consen 71 AYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRT 106 (130)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 533 21 3455554444444455566667654
No 123
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=64.41 E-value=20 Score=32.55 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=55.0
Q ss_pred HhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCC----CCCCeEEcCCHHHHHHHHHHhcCCC-
Q 042131 111 IQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAY----DGRGNAVAKSEEELSSAITALGGFD- 185 (201)
Q Consensus 111 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~----~g~gv~~~~~~~el~~~~~~~~~~~- 185 (201)
..++...+++++.+|+++|++ ..++.+++...++.++ |-.+--- .-.||.+=.+..++.+++......+
T Consensus 470 ~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~-----Kl~s~~i~hksev~gv~l~~~~~~v~~a~~~~~~~pa 543 (598)
T COG1042 470 TLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG-----KLRSPDIDHKSEVGGVMLNRTADAVEKAADDILARPA 543 (598)
T ss_pred ccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh-----hccCCccchhhhccceeecCcHHHHHHHHHhHhcccc
Confidence 356778899999999999999 9999999999988887 4432211 1125554488888888887654321
Q ss_pred --CceEEeecCC
Q 042131 186 --RSLYIEKWAP 195 (201)
Q Consensus 186 --~~~lvEe~i~ 195 (201)
..+++|+...
T Consensus 544 ~i~g~lvq~m~~ 555 (598)
T COG1042 544 RIAGVLVQTMAK 555 (598)
T ss_pred hhhhhhhHhhhh
Confidence 2355555544
No 124
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=62.25 E-value=5.8 Score=27.01 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=26.8
Q ss_pred ccCCCCHhhhh------cCCeEEeccccCC-HHHHHHHHHCCCc-ccccHHHHHH
Q 042131 64 VHNFELPVAVV------ACGVLTVEIEHVD-VAIMEKLEQQGVD-CQPKASTIRI 110 (201)
Q Consensus 64 ~~~~~d~~~l~------~~d~i~~~~~~i~-~~~~~~l~~~g~~-~~~~~~~~~~ 110 (201)
..+..|.+.+. .+|.+....|.+- ..+.+.|.+.|++ ++|+.++.++
T Consensus 45 ~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 45 PIDITDPEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp -S-TT-HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence 34677777776 6676655444432 2456889999995 5888887765
No 125
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.37 E-value=11 Score=33.27 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc-----CCCCceEEeecCCCce
Q 042131 148 GYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG-----GFDRSLYIEKWAPFVK 198 (201)
Q Consensus 148 ~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~-----~~~~~~lvEe~i~G~e 198 (201)
...+|+||..- +-|+||+++++.+++......+. ...+.+.++.||+-++
T Consensus 199 ~~~wIvKP~~~-srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~pl 253 (497)
T KOG2157|consen 199 RSWWIVKPASK-SRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPL 253 (497)
T ss_pred cceEEeccccc-cccceeEEecchhhhhhhhhcccccccccccccceeeeeccCcc
Confidence 46799999874 58999999999999887664321 2345688899887654
No 126
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.80 E-value=83 Score=23.09 Aligned_cols=92 Identities=8% Similarity=-0.076 Sum_probs=50.7
Q ss_pred ccccccccCCCeEEEECC-CCC-cccccCCCCCCCCCCccccCCCCH-hhhh-----cCCeEEeccccCCHHHHHHHHHC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAI-AARGISPPPLLDSARPEVHNFELP-VAVV-----ACGVLTVEIEHVDVAIMEKLEQQ 97 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~-~~~~~~~~~~~~a~~~~~~~~~d~-~~l~-----~~d~i~~~~~~i~~~~~~~l~~~ 97 (201)
.+.+.|.++|.+|.++.+ ... +.... ....++..-.|. +..+ .-|++.+. +..++..+-..
T Consensus 16 ~i~r~A~r~~~~v~~Van~~~~~~~~~~-------i~~v~V~~g~DaaD~~Iv~~a~~gDlVVT~----Di~LA~~ll~k 84 (150)
T COG1671 16 EIYRVAERMGLKVTFVANFPHRVPPSPE-------IRTVVVDAGFDAADDWIVNLAEKGDLVVTA----DIPLASLLLDK 84 (150)
T ss_pred HHHHHHHHhCCeEEEEeCCCccCCCCCc-------eeEEEecCCcchHHHHHHHhCCCCCEEEEC----chHHHHHHHhc
Confidence 456789999999999988 433 21112 222333333332 2222 33444321 23456667777
Q ss_pred CCcc-cc-----cHHHHHHHhCHHHHHHHHhhCCCCC
Q 042131 98 GVDC-QP-----KASTIRIIQDKYIQKVHFSPHGIPL 128 (201)
Q Consensus 98 g~~~-~~-----~~~~~~~~~dK~~~~~~l~~~gip~ 128 (201)
|..+ .| +.+.|....+.-.+..-+...|..+
T Consensus 85 g~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~ 121 (150)
T COG1671 85 GAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT 121 (150)
T ss_pred CCEEECCCCcccCHhHHHHHHHHHHHHHHHHHhcccc
Confidence 7643 33 3566666666666666667777765
No 127
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.61 E-value=1.1e+02 Score=24.50 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=48.3
Q ss_pred HHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCC
Q 042131 91 MEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKS 170 (201)
Q Consensus 91 ~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~ 170 (201)
.+..++.|+++..+. .|......+.+...+-...+..+.+.+- ...+.+.+.|+++|--.. .+
T Consensus 72 ~~~~~~~Gl~~~Tev------~d~~~v~~~~e~vdilqIgs~~~~n~~L-L~~va~tgkPVilk~G~~----------~t 134 (250)
T PRK13397 72 HEVCQEFGLLSVSEI------MSERQLEEAYDYLDVIQVGARNMQNFEF-LKTLSHIDKPILFKRGLM----------AT 134 (250)
T ss_pred HHHHHHcCCCEEEee------CCHHHHHHHHhcCCEEEECcccccCHHH-HHHHHccCCeEEEeCCCC----------CC
Confidence 345567788655543 3333333333322222244556667554 445566799999997432 37
Q ss_pred HHHHHHHHHHhcC-CC-CceEEeecC
Q 042131 171 EEELSSAITALGG-FD-RSLYIEKWA 194 (201)
Q Consensus 171 ~~el~~~~~~~~~-~~-~~~lvEe~i 194 (201)
.+|+..+.+.+.. .+ +-+|.|+-+
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcccc
Confidence 8888888877642 22 334556454
No 128
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=54.43 E-value=68 Score=25.69 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCCCCCCccccCC---HHHHHHHHHHhCCCE-EEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVND---LESARRAGKQFGYPL-MVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~---~~~~~~~~~~~~~P~-VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
+..-+++++++++.+.-++-.-. ..+-.+++.++|.|+ ||+-..- -.+...+++.+|+.+.+.+
T Consensus 186 ~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~---~~~~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 186 EELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT---IPGVAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC---CCCCccCCCHHHHHHHHHH
Confidence 56667777888877765553321 233345677788886 3443321 1224566788887777654
No 129
>PRK05849 hypothetical protein; Provisional
Probab=53.75 E-value=90 Score=29.43 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=53.9
Q ss_pred HhCHHHHHHHHhh--CCCCCCCccccCC------HHHHHHHHHH-h-CCCEEEeecCCCC-----CCCCeE----EcCCH
Q 042131 111 IQDKYIQKVHFSP--HGIPLPEFMEVND------LESARRAGKQ-F-GYPLMVKSKSLAY-----DGRGNA----VAKSE 171 (201)
Q Consensus 111 ~~dK~~~~~~l~~--~gip~p~~~~~~~------~~~~~~~~~~-~-~~P~VvKp~~g~~-----~g~gv~----~~~~~ 171 (201)
+..|..+-..|+. .|.++|+.+++.. .+.+.+.+.. + +-|++|+...-+- +.-|.+ -+...
T Consensus 8 ~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~ 87 (783)
T PRK05849 8 FQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNAD 87 (783)
T ss_pred cchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCC
Confidence 4567777778887 8899998776654 3333333332 2 4689999765321 222544 33333
Q ss_pred --HHHHHHHHHhc-----CCCCceEEeecCCCce
Q 042131 172 --EELSSAITALG-----GFDRSLYIEKWAPFVK 198 (201)
Q Consensus 172 --~el~~~~~~~~-----~~~~~~lvEe~i~G~e 198 (201)
++|..++.... .....++||++|.+..
T Consensus 88 ~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~~~ 121 (783)
T PRK05849 88 SKDQLLKAIEKVIASYGTSKDDEILVQPMLEDIV 121 (783)
T ss_pred cHHHHHHHHHHHHHhhCCCCCCeEEEEeCccCCC
Confidence 38888876532 1335699999998533
No 130
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=44.24 E-value=1.6e+02 Score=23.66 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=31.7
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC-CCCceEE-ee
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG-FDRSLYI-EK 192 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~-~~~~~lv-Ee 192 (201)
+..+.+.+ +...+.+.|.|+++|--.. .+.+|+..+++.+.. ...++++ |.
T Consensus 116 s~~~~n~~-LL~~~a~~gkPVilk~G~~----------~t~~e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 116 ARNMQNFE-LLKEVGKQGKPVLLKRGMG----------NTIEEWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred cccccCHH-HHHHHhcCCCcEEEeCCCC----------CCHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 44556655 3344567799999997432 268888888887652 2333444 54
No 131
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=42.40 E-value=16 Score=26.57 Aligned_cols=36 Identities=8% Similarity=-0.128 Sum_probs=27.1
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFE 68 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~ 68 (201)
..++.|++.|.+++.++. .+.+..+. +|..+.....
T Consensus 97 ~~~~~a~~~g~~ii~iT~~~~s~l~~~-------ad~~l~~~~~ 133 (154)
T TIGR00441 97 KAIEAAKDKGMKTITLAGKDGGKMAGL-------ADIELRVPHF 133 (154)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhh-------CCEEEEeCCC
Confidence 677889999999999998 77777777 6655544333
No 132
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.36 E-value=15 Score=25.44 Aligned_cols=33 Identities=3% Similarity=-0.117 Sum_probs=25.9
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCcccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVH 65 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~ 65 (201)
..++.|+++|.+++.++. .+.+..+. +|..+..
T Consensus 65 ~~~~~a~~~g~~vi~iT~~~~s~la~~-------ad~~l~~ 98 (128)
T cd05014 65 NLLPHLKRRGAPIIAITGNPNSTLAKL-------SDVVLDL 98 (128)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCchhhh-------CCEEEEC
Confidence 667789999999999998 78887777 6665443
No 133
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.27 E-value=9.4 Score=26.38 Aligned_cols=26 Identities=4% Similarity=-0.225 Sum_probs=22.1
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
..++.|++.|.+++.++. ++.+..+.
T Consensus 64 ~~~~~a~~~g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 64 AALRLAKEKGAKTVAITNVVGSTLARE 90 (126)
T ss_pred HHHHHHHHcCCeEEEEECCCCChHHHh
Confidence 667889999999999998 78887777
No 134
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.10 E-value=11 Score=32.93 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=34.3
Q ss_pred CCCCCCccCCCCCCCCchhhhh----cccccccccccCCCeEEEECC
Q 042131 1 MTPPLGFCSSPCPLPSPTIHCR----RGRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~~----~g~~l~~aa~~~G~~v~~~~~ 43 (201)
|+-|+|-|+=.......+++++ .|..++..++++|++|.++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 1 MSRPPGLTSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDD 47 (480)
T ss_pred CCcccchhhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 7788898887766666677766 456778899999999999886
No 135
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=41.67 E-value=62 Score=19.74 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh----CCCEEE
Q 042131 115 YIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF----GYPLMV 153 (201)
Q Consensus 115 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~----~~P~Vv 153 (201)
...+++|+++|++.....+-.+.+....+.+.. .+|.|+
T Consensus 14 ~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 14 VRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 345677788888665444434433333333222 577765
No 136
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=41.34 E-value=1.4e+02 Score=23.86 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHHhhCCCCCCCccccCC--HHHHHHHHHHhCCCE-EEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVND--LESARRAGKQFGYPL-MVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~--~~~~~~~~~~~~~P~-VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
+..-+++++++++.+.-++-.-. ..+-.+++.+.|.|+ |||-..- .. +...+++.+|+.+.+.+
T Consensus 179 ~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~--~~-~~~~~~~~~e~~~~l~~ 245 (248)
T PRK08057 179 LELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPAL--PY-ADREFEDVAELVAWLRH 245 (248)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC--CC-CCcccCCHHHHHHHHHH
Confidence 66777888899988876664433 344446778899996 5664331 11 23557888888887765
No 137
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=41.33 E-value=1.1e+02 Score=26.95 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=39.3
Q ss_pred HHHhCHHHHHHHHhhCCCCC-CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC-CeEEcCCHH----HHHHHHHH
Q 042131 109 RIIQDKYIQKVHFSPHGIPL-PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR-GNAVAKSEE----ELSSAITA 180 (201)
Q Consensus 109 ~~~~dK~~~~~~l~~~gip~-p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~-gv~~~~~~~----el~~~~~~ 180 (201)
.+..++..++++-++.|+++ |+ ...++.+.+++++.-+..|... +-||. |+.++.+.. .+.+.|..
T Consensus 360 ~i~~~R~~Lr~~~~~sgv~IEp~-----~~t~Lld~~~~~~Gvl~a~vpG-AGGgDa~~~l~~~~~~~~~~~~~~W~~ 431 (454)
T TIGR01219 360 AMLRIRRLMRQITEEASVDIEPE-----SQTQLLDSTMSLEGVLLAGVPG-AGGFDAIFAITLGDVDSGTKLTQAWSS 431 (454)
T ss_pred HHHHHHHHHHHhhHhcCCcccCH-----HHHHHHHHHhhcCCeeEeecCC-CCccceEEEEecCChHHHHHHHHHHhh
Confidence 35677888888888888887 33 2334444555555544478764 42444 455767643 45555544
No 138
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=39.77 E-value=1.6e+02 Score=25.38 Aligned_cols=97 Identities=10% Similarity=0.152 Sum_probs=58.5
Q ss_pred HHHHHHHCCCcccccHHHHHHHhCH--H-HHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 90 IMEKLEQQGVDCQPKASTIRIIQDK--Y-IQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 90 ~~~~l~~~g~~~~~~~~~~~~~~dK--~-~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
+.+.|.+.|+.+..+.++...+.+. . .-.++-.++-=...-.+++++.+++-+.+++.+ ++.....
T Consensus 276 l~~~l~~~gvelr~d~~~~~~~~~~~~~A~e~Dw~tEyLd~ilavkvVd~ld~AI~HIn~y~-----------S~HsdaI 344 (417)
T COG0014 276 LANALQEAGVELRGDAEALALLPDAVKPATEEDWDTEYLDLILAVKVVDSLDEAIAHINTYG-----------SGHSDAI 344 (417)
T ss_pred HHHHHHhcCeEEEcCHHHHHhccccCCCCchhhHHHHhhhheeEEEEeCCHHHHHHHHHHhC-----------CCCCcce
Confidence 3466777888777788877776652 1 111122222222333456777777766666543 2555778
Q ss_pred EcCCHHHHHHHHHHhcCCCCceEE---eecCCCcee
Q 042131 167 VAKSEEELSSAITALGGFDRSLYI---EKWAPFVKV 199 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~~~~~~lv---Ee~i~G~e~ 199 (201)
+.+|....+.+........ +++ -+|-+|.+|
T Consensus 345 iTe~~~~a~~F~~~VDSAa--VyvNASTRFtDG~~f 378 (417)
T COG0014 345 ITEDYANAERFVNEVDSAA--VYVNASTRFTDGGQF 378 (417)
T ss_pred eeCCHHHHHHHHhhcchhe--EEEecccccccCccc
Confidence 8889888888777655433 444 567777665
No 139
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=39.66 E-value=19 Score=26.71 Aligned_cols=37 Identities=3% Similarity=-0.197 Sum_probs=27.7
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFEL 69 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d 69 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+.....+
T Consensus 119 ~~~~~ak~~Ga~vI~IT~~~~s~La~~-------aD~~l~~~~~~ 156 (177)
T cd05006 119 KALEAAKERGMKTIALTGRDGGKLLEL-------ADIEIHVPSDD 156 (177)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhh-------CCEEEEeCCCC
Confidence 677889999999999988 77777777 66655444433
No 140
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=37.50 E-value=12 Score=33.97 Aligned_cols=52 Identities=6% Similarity=-0.097 Sum_probs=32.2
Q ss_pred ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh-----cCCeEE
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV-----ACGVLT 80 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~-----~~d~i~ 80 (201)
|+.+++.+++.|++++++|. ++.- ...+. . -...+..|..+.+.+. +++.+.
T Consensus 412 G~~va~~L~~~g~~vvvID~d~~~v-~~~~~---~-g~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 412 GQVIGRLLMANKMRITVLERDISAV-NLMRK---Y-GYKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred HHHHHHHHHhCCCCEEEEECCHHHH-HHHHh---C-CCeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 56888889999999999997 3221 11100 0 2234566777777665 555554
No 141
>TIGR03586 PseI pseudaminic acid synthase.
Probab=37.02 E-value=2.5e+02 Score=23.47 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=51.9
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCC--ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPE--FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~--~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
.+.+..++.|+.++.++- |.... +++.++|++.-+ +.-+++..-+ +.+.+.|.|+++|--.
T Consensus 81 ~L~~~~~~~Gi~~~stpf------d~~sv-d~l~~~~v~~~KI~S~~~~n~~LL-~~va~~gkPvilstG~--------- 143 (327)
T TIGR03586 81 ELFERAKELGLTIFSSPF------DETAV-DFLESLDVPAYKIASFEITDLPLI-RYVAKTGKPIIMSTGI--------- 143 (327)
T ss_pred HHHHHHHHhCCcEEEccC------CHHHH-HHHHHcCCCEEEECCccccCHHHH-HHHHhcCCcEEEECCC---------
Confidence 344667788886555442 22222 577777777533 3344555544 4456679999999621
Q ss_pred EcCCHHHHHHHHHHhcC-CCCceEEeecCC
Q 042131 167 VAKSEEELSSAITALGG-FDRSLYIEKWAP 195 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~-~~~~~lvEe~i~ 195 (201)
.+.+|+..+++.+.. ...++.+-.++.
T Consensus 144 --~t~~Ei~~Av~~i~~~g~~~i~LlhC~s 171 (327)
T TIGR03586 144 --ATLEEIQEAVEACREAGCKDLVLLKCTS 171 (327)
T ss_pred --CCHHHHHHHHHHHHHCCCCcEEEEecCC
Confidence 278888888887752 223355544543
No 142
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.93 E-value=49 Score=22.87 Aligned_cols=20 Identities=10% Similarity=0.193 Sum_probs=16.1
Q ss_pred ccccccccccCCCeEEEECC
Q 042131 24 GRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~ 43 (201)
|+.+...+++.||+++.+++
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp 35 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNP 35 (116)
T ss_dssp HHHHHHHHHHTT-EEEEEST
T ss_pred HHHHHHHHHhCCCEEEEECC
Confidence 56777888889999999987
No 143
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=35.50 E-value=1.2e+02 Score=25.43 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=50.2
Q ss_pred HHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCC---c---cccCCHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 90 IMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPE---F---MEVNDLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 90 ~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~---~---~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
.++.+.++++ .+.|..+...++.++..|.+. |+..-- . ..+++...+-+++++.+.|+ |
T Consensus 58 ~l~~C~~~~Idv~~P~~~~~~l~~~r~~F~a~----Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipv---p------- 123 (329)
T PF15632_consen 58 CLDFCKEHGIDVFVPGRNRELLAAHRDEFEAL----GVKLLTASSAETLELADDKAAFYEFMEANGIPV---P------- 123 (329)
T ss_pred HHHHHHHhCCeEEEcCccHHHHHHHHHHHHHh----CCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCC---C-------
Confidence 4566778888 567887777788777766654 655421 1 13344444444555555544 1
Q ss_pred CCeEEcCCHHHHHHHHHHhcC
Q 042131 163 RGNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~ 183 (201)
--+.+++.+|++++++.+..
T Consensus 124 -~~~~v~t~~el~~a~~~l~~ 143 (329)
T PF15632_consen 124 -PYWRVRTADELKAAYEELRF 143 (329)
T ss_pred -CEEEeCCHHHHHHHHHhcCC
Confidence 12478999999999998653
No 144
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=35.36 E-value=74 Score=27.11 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCCCCccccCCHHHHH----HHHHHh---C-CCEEEeecCCCCCCCCeEEc---CCHHHHHHHHHHhcC
Q 042131 115 YIQKVHFSPHGIPLPEFMEVNDLESAR----RAGKQF---G-YPLMVKSKSLAYDGRGNAVA---KSEEELSSAITALGG 183 (201)
Q Consensus 115 ~~~~~~l~~~gip~p~~~~~~~~~~~~----~~~~~~---~-~P~VvKp~~g~~~g~gv~~~---~~~~el~~~~~~~~~ 183 (201)
....++++++|+|+++-.-..+.+++. +.++++ + ==+|+|+..+ ..+-+..+ .|-.|+.-++..+..
T Consensus 177 ~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~--~~~~~KYtT~~~n~~Di~~~~~~~~d 254 (374)
T TIGR01209 177 EERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEM--RVKPLKYTTSYANINDIKYAARYFFE 254 (374)
T ss_pred HHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccc--cCCcceeecCccChHHHHHHHhhccc
Confidence 556678999999997755444554443 222332 1 1279998863 34444433 355677666665443
No 145
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=34.93 E-value=16 Score=29.01 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCCchhhhhcc----cccccccccCCCeEEEECC
Q 042131 14 LPSPTIHCRRG----RRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 14 ~~~~~i~~~~g----~~l~~aa~~~G~~v~~~~~ 43 (201)
.+.|++.+.++ +.+++-|+.+||+|.++|+
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~ 131 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDS 131 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeC
Confidence 46678887754 5778889999999999998
No 146
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=34.54 E-value=1.5e+02 Score=24.02 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC-CeEEcCCHHHHHHHHHHh
Q 042131 116 IQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR-GNAVAKSEEELSSAITAL 181 (201)
Q Consensus 116 ~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~-gv~~~~~~~el~~~~~~~ 181 (201)
.+-+.+++.|+-+-++ +.+.++++.++ +-|-.+++=-.....+|. |.....+.++..+..+++
T Consensus 141 emi~~A~~~gl~T~~y--vf~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i 204 (268)
T PF09370_consen 141 EMIRKAHEKGLFTTAY--VFNEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEI 204 (268)
T ss_dssp HHHHHHHHTT-EE--E--E-SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeeee--ecCHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHH
Confidence 4445667777777664 46999988776 556666665553333444 788888888776666554
No 147
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.84 E-value=18 Score=26.82 Aligned_cols=32 Identities=0% Similarity=-0.140 Sum_probs=25.7
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEV 64 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~ 64 (201)
.+++.|++.|.+++.++. .+.|..+. +|..+.
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~la~~-------ad~~l~ 122 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPESTLGKL-------ADVVVE 122 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCchHHh-------CCEEEE
Confidence 666779999999999998 88887777 666543
No 148
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=33.71 E-value=28 Score=27.22 Aligned_cols=55 Identities=5% Similarity=-0.037 Sum_probs=35.2
Q ss_pred cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh-----cCCeEE
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV-----ACGVLT 80 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~-----~~d~i~ 80 (201)
-|+.+++.+.+.|+.|++++. +.......+. ......+..+-.+.+.|. .+|++.
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 367899999999999999998 3322221200 002234567778888777 666654
No 149
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.58 E-value=79 Score=21.14 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCc---ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 88 VAIMEKLEQQGVD---CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 88 ~~~~~~l~~~g~~---~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
.++++.|.+.|.+ +.|+. ...+....+.|+..|+++.+..++++...+...+++.. +++.
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns-----~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~------------~~~~ 82 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNS-----SRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHK------------GGKK 82 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-S-----SS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHT------------TSSE
T ss_pred HHHHHHHHHcCCCEEEEeCCC-----CCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcC------------CCCE
Confidence 3677888888863 23333 14555666777999999988888999888887776631 3556
Q ss_pred eEEcCCHHHHHHHH
Q 042131 165 NAVAKSEEELSSAI 178 (201)
Q Consensus 165 v~~~~~~~el~~~~ 178 (201)
|+++-+. .+.+.+
T Consensus 83 v~vlG~~-~l~~~l 95 (101)
T PF13344_consen 83 VYVLGSD-GLREEL 95 (101)
T ss_dssp EEEES-H-HHHHHH
T ss_pred EEEEcCH-HHHHHH
Confidence 6666665 334333
No 150
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.16 E-value=27 Score=26.78 Aligned_cols=38 Identities=3% Similarity=-0.245 Sum_probs=28.2
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCH
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELP 70 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~ 70 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+.....+.
T Consensus 131 ~a~~~Ak~~G~~vI~iT~~~~s~La~~-------aD~~l~v~~~e~ 169 (196)
T PRK13938 131 RAAKTARELGVTVVAMTGESGGQLAEF-------ADFLINVPSRDT 169 (196)
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhhhh-------CCEEEEeCCCch
Confidence 667789999999999998 77777777 666554444433
No 151
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=32.07 E-value=1.2e+02 Score=19.96 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=31.7
Q ss_pred hCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEee
Q 042131 112 QDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKS 155 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp 155 (201)
.|-.....+|+..+.|.| +..--+.+++..++++.||-+.+=|
T Consensus 33 dDA~RYa~lLEAqd~~~p-~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 33 DDAERYAGLLEAQDFPDP-TVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred HHHHHHHHHHHhcCCCCC-CeEEECHHHHHHHHHHCCceEEEEC
Confidence 344556678888899888 5555577888899999998875544
No 152
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=32.04 E-value=17 Score=24.43 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=13.3
Q ss_pred cccHHHHHHHhCHHHHHHHHhhCCCC
Q 042131 102 QPKASTIRIIQDKYIQKVHFSPHGIP 127 (201)
Q Consensus 102 ~~~~~~~~~~~dK~~~~~~l~~~gip 127 (201)
+|+++.+..+ +....++++...|++
T Consensus 27 ~pt~~~l~~~-~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 27 FPTPEALAEA-SEEELRELIRPLGFS 51 (108)
T ss_dssp CSSHHHHHCS-HHHHHHHHHTTSTSH
T ss_pred CCCHHHHHhC-CHHHHHHHhhccCCC
Confidence 4666666433 355555555555544
No 153
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=31.59 E-value=1.3e+02 Score=24.22 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHH
Q 042131 115 YIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAIT 179 (201)
Q Consensus 115 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~ 179 (201)
-.+.+..+..|+..|.-+ .. +.++-+.+|+|++.+-..| .+|+|+.+-..-+++...+.
T Consensus 32 gS~s~AA~~l~~s~~a~s--~~---i~~le~~lg~~L~~r~~gg-~~g~~~~lT~~G~~l~~~~~ 90 (263)
T PRK10676 32 GSISQGAKLAGISYKSAW--DA---INEMNQLSEHILVERATGG-KGGGGAVLTRYGERLIQLYD 90 (263)
T ss_pred CCHHHHHHHhCCCHHHHH--HH---HHHHHHHhCCCeEEEecCC-CCCCCcEECHHHHHHHHHHH
Confidence 344556666676665422 11 2222346899999998764 47888887776666655443
No 154
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.16 E-value=20 Score=24.85 Aligned_cols=26 Identities=8% Similarity=-0.095 Sum_probs=21.7
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
..++.|++.|.+++.++. .+.+..+.
T Consensus 65 ~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (120)
T cd05710 65 AAAKFAKEKGATVIGLTDDEDSPLAKL 91 (120)
T ss_pred HHHHHHHHcCCeEEEEECCCCCcHHHh
Confidence 667788999999999998 77777677
No 155
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=30.10 E-value=1.7e+02 Score=19.61 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=38.3
Q ss_pred hCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 112 QDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
.+-..+....+..|+..+. +... +..+-+.+|.|++.+...|. +|+|+.+...-+++...+..
T Consensus 14 ~~~gSis~AA~~L~iS~st--vs~~---I~~LE~~lg~~Lf~R~~~g~-~~~g~~lT~~G~~l~~~~~~ 76 (99)
T TIGR00637 14 ARMGSISQAAKDAGISYKS--AWDY---IRAMNNLSGEPLVERATGGK-GGGGAVLTEYGQRLIQLYDL 76 (99)
T ss_pred HHhCCHHHHHHHHCCCHHH--HHHH---HHHHHHHhCCCeEEecCCCC-CCCCeeECHHHHHHHHHHHH
Confidence 3334445566666665543 1122 22233568999999987643 68888888877777555443
No 156
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=29.67 E-value=1.5e+02 Score=19.04 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCccccCCHHHHHHHHHHhCCCEEEee
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEFMEVNDLESARRAGKQFGYPLMVKS 155 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~P~VvKp 155 (201)
.+++.|.+.|..++....+. ++|+++|+++ .-...-.....+.+.+++-.+-+|+=-
T Consensus 4 ~~~~~l~~lG~~i~AT~gTa----------~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~ 62 (90)
T smart00851 4 ELAKRLAELGFELVATGGTA----------KFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINT 62 (90)
T ss_pred HHHHHHHHCCCEEEEccHHH----------HHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEEC
Confidence 45667778888665555443 5667788875 111121222334444444445555543
No 157
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=29.32 E-value=1.3e+02 Score=25.34 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=41.7
Q ss_pred HHHHHHHHhhCCCCCCCc---cccCCHHHHHHHHHHh---CC-CEEEeecCCCCCCCCeE---EcCCHHHHHHHHHHhcC
Q 042131 114 KYIQKVHFSPHGIPLPEF---MEVNDLESARRAGKQF---GY-PLMVKSKSLAYDGRGNA---VAKSEEELSSAITALGG 183 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~---~~~~~~~~~~~~~~~~---~~-P~VvKp~~g~~~g~gv~---~~~~~~el~~~~~~~~~ 183 (201)
-...+++|+++|+|.++. ..+++.+++.++.++. |. =+|+|..++ -.+-+. -..|-.|+..++..+..
T Consensus 144 ~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~--~~~~~Ky~t~~~~~~di~~~~~~~~d 221 (342)
T cd07894 144 VEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDM--RVPPLKYTTSYSNCSDIRYAFRYPFD 221 (342)
T ss_pred HHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEecccc--ccCcceeecCCCCcHHHHHHhhhccc
Confidence 356668899999988663 4556666666655442 22 279998762 233333 33466677777765543
No 158
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.29 E-value=30 Score=26.11 Aligned_cols=35 Identities=3% Similarity=-0.175 Sum_probs=26.6
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNF 67 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 67 (201)
..++.|++.|.+++.++. .+.+..+. +|..+....
T Consensus 124 ~~~~~ak~~g~~~I~iT~~~~s~L~~~-------ad~~l~~~~ 159 (188)
T PRK13937 124 AALEKARELGMKTIGLTGRDGGKMKEL-------CDHLLIVPS 159 (188)
T ss_pred HHHHHHHHCCCeEEEEeCCCCChhHHh-------CCEEEEeCC
Confidence 567889999999999998 77777777 666554433
No 159
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.22 E-value=3.5e+02 Score=22.88 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=27.1
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG 182 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~ 182 (201)
...+.+.+ +...+.+.+.|+++|--.. .+.+|+..+.+.+.
T Consensus 192 a~~~~n~~-LL~~va~t~kPVllk~G~~----------~t~ee~~~A~e~i~ 232 (352)
T PRK13396 192 ARNMQNFS-LLKKVGAQDKPVLLKRGMA----------ATIDEWLMAAEYIL 232 (352)
T ss_pred cccccCHH-HHHHHHccCCeEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 44455544 3344556789999997432 37889888888764
No 160
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=28.88 E-value=12 Score=26.51 Aligned_cols=31 Identities=10% Similarity=-0.053 Sum_probs=21.6
Q ss_pred CCCCchhhhh----cccccccccccCCCeEEEECC
Q 042131 13 PLPSPTIHCR----RGRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 13 ~~~~~~i~~~----~g~~l~~aa~~~G~~v~~~~~ 43 (201)
.-++.+|.++ -|..|..++++.||.+..+.+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 3456677776 456899999999999988776
No 161
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.68 E-value=3.6e+02 Score=22.81 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=46.8
Q ss_pred HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcC
Q 042131 92 EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAK 169 (201)
Q Consensus 92 ~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~ 169 (201)
+..++.|+.+..++ .|..... ++.++ ++. ..+..+++.+ +...+.+.|.|+++|--.. .
T Consensus 176 ~~~~~~Gl~~~t~v------~d~~~~~-~l~~~-vd~lkI~s~~~~n~~-LL~~~a~~gkPVilk~G~~----------~ 236 (360)
T PRK12595 176 QVADEYGLAVISEI------VNPADVE-VALDY-VDVIQIGARNMQNFE-LLKAAGRVNKPVLLKRGLS----------A 236 (360)
T ss_pred HHHHHcCCCEEEee------CCHHHHH-HHHHh-CCeEEECcccccCHH-HHHHHHccCCcEEEeCCCC----------C
Confidence 45567787654443 2222222 33333 333 3355566654 4455667799999997432 2
Q ss_pred CHHHHHHHHHHhcC-CC-CceEEeecCC
Q 042131 170 SEEELSSAITALGG-FD-RSLYIEKWAP 195 (201)
Q Consensus 170 ~~~el~~~~~~~~~-~~-~~~lvEe~i~ 195 (201)
+.+|+..+++.+.. ++ +-+|.|+.+.
T Consensus 237 t~~e~~~Ave~i~~~Gn~~i~L~erg~s 264 (360)
T PRK12595 237 TIEEFIYAAEYIMSQGNGQIILCERGIR 264 (360)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCccC
Confidence 78888888877642 22 2344454443
No 162
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.75 E-value=30 Score=25.74 Aligned_cols=26 Identities=4% Similarity=-0.061 Sum_probs=22.2
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
.+++.|++.|.+++.++. .+.+..+.
T Consensus 93 ~~~~~ak~~g~~iI~IT~~~~s~la~~ 119 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSPLAKL 119 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 677889999999999998 77887777
No 163
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.63 E-value=2e+02 Score=20.41 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc
Q 042131 135 NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG 182 (201)
Q Consensus 135 ~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~ 182 (201)
.+..++.+.+...++|+.||-.- + |..+--.++++....+++.
T Consensus 17 vsp~elv~~l~~~~~PvtiKeTC--f---Gaii~G~Ed~v~klveriR 59 (142)
T COG4029 17 VSPKELVQKLLELSPPVTIKETC--F---GAIIDGPEDEVRKLVERIR 59 (142)
T ss_pred cChHHHHHHHHhcCCCeEeeeee--e---eeeecCcHHHHHHHHHHHH
Confidence 35677777888899999999764 2 3344445555666665543
No 164
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A ....
Probab=27.62 E-value=1.4e+02 Score=24.79 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=20.8
Q ss_pred CHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQ 146 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~ 146 (201)
+.....++|.++|+++++ ...+.+.+++.++.+.
T Consensus 235 t~~e~l~~L~~~GF~v~~~~~~~~~~~~v~~~~~~ 269 (315)
T PF01653_consen 235 TQSERLQFLKEWGFPVNPYIRFCKSIEEVEEYIEE 269 (315)
T ss_dssp BHHHHHHHHHHTT--B-TTEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcceEecCCHHHHHHHHHH
Confidence 456666777888888755 4556777777766543
No 165
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=27.42 E-value=1.4e+02 Score=24.64 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=30.2
Q ss_pred HHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEE-EeecCCCCCCCCeEEcCCHHHH
Q 042131 119 VHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLM-VKSKSLAYDGRGNAVAKSEEEL 174 (201)
Q Consensus 119 ~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~V-vKp~~g~~~g~gv~~~~~~~el 174 (201)
.+|.+.|+-+| ..+.+...+++.| .. -|-..+|.||-++.++++.+..
T Consensus 237 ~LL~~LgVs~~------~L~~lv~~a~~~G--a~gaKlTGAGgGGc~IaL~~~~~~~ 285 (307)
T COG1577 237 GLLKALGVSTP------ELDELVEAARSLG--ALGAKLTGAGGGGCIIALAKNEEIA 285 (307)
T ss_pred HHHHhcCcCcH------HHHHHHHHHHhcC--ccccccccCCCCceEEEEeccchHH
Confidence 45566664443 3455666666665 35 6888766566678899985553
No 166
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.27 E-value=3.7e+02 Score=22.47 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCC--ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPE--FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~--~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
.+.+..++.|+.++.++ .|.... +++.++|++.-+ +.-+++..-+ +.+.+.|.|+|+|.-.
T Consensus 80 ~L~~~~~~~Gi~~~stp------fd~~sv-d~l~~~~v~~~KIaS~~~~n~pLL-~~~A~~gkPvilStGm--------- 142 (329)
T TIGR03569 80 ELKEYCESKGIEFLSTP------FDLESA-DFLEDLGVPRFKIPSGEITNAPLL-KKIARFGKPVILSTGM--------- 142 (329)
T ss_pred HHHHHHHHhCCcEEEEe------CCHHHH-HHHHhcCCCEEEECcccccCHHHH-HHHHhcCCcEEEECCC---------
Confidence 34567778898655544 222222 577778877644 4455666544 4456679999999621
Q ss_pred EcCCHHHHHHHHHHhc
Q 042131 167 VAKSEEELSSAITALG 182 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~ 182 (201)
.+.+|+..+++.+.
T Consensus 143 --atl~Ei~~Av~~i~ 156 (329)
T TIGR03569 143 --ATLEEIEAAVGVLR 156 (329)
T ss_pred --CCHHHHHHHHHHHH
Confidence 27888888887765
No 167
>PRK00124 hypothetical protein; Validated
Probab=26.84 E-value=2.6e+02 Score=20.55 Aligned_cols=18 Identities=6% Similarity=-0.274 Sum_probs=14.7
Q ss_pred ccccccccCCCeEEEECC
Q 042131 26 RFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~ 43 (201)
.+.++|++.|..++++.+
T Consensus 15 ~i~r~a~r~~i~v~~Vas 32 (151)
T PRK00124 15 IIIRVAERHGIPVTLVAS 32 (151)
T ss_pred HHHHHHHHHCCeEEEEEe
Confidence 456788899999999884
No 168
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.66 E-value=31 Score=27.87 Aligned_cols=33 Identities=0% Similarity=-0.092 Sum_probs=26.9
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCcccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVH 65 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~ 65 (201)
.+++.|++.|.+++.+++ ..+|..+. +|..+..
T Consensus 195 ~~a~~ak~~ga~vIaiT~~~~spla~~-------Ad~~L~~ 228 (281)
T COG1737 195 EAAELAKERGAKVIAITDSADSPLAKL-------ADIVLLV 228 (281)
T ss_pred HHHHHHHHCCCcEEEEcCCCCCchhhh-------hceEEec
Confidence 677889999999999999 78888888 6665443
No 169
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=26.22 E-value=4e+02 Score=22.80 Aligned_cols=89 Identities=9% Similarity=-0.014 Sum_probs=47.4
Q ss_pred ccccccccCCCeEEEECCC-CCcccccCCCCCCCCCCccccCCCCHhhhh-cCCeEEeccccCCHHHHHHHHHCCCcccc
Q 042131 26 RFPVDRPLKDSRLWELDSG-AIAARGISPPPLLDSARPEVHNFELPVAVV-ACGVLTVEIEHVDVAIMEKLEQQGVDCQP 103 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~-~~d~i~~~~~~i~~~~~~~l~~~g~~~~~ 103 (201)
++..+++.+|.++++-... +.....+ -+.+++.++....+++ .+|++... =+.....++-..|++..-
T Consensus 256 ~~~~a~~~l~~~vi~~~~~~~~~~~~~-------p~n~~v~~~~p~~~~l~~ad~vI~h---GG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 256 IVLEALADLDVRVIVSLGGARDTLVNV-------PDNVIVADYVPQLELLPRADAVIHH---GGAGTTSEALYAGVPLVV 325 (406)
T ss_pred HHHHHHhcCCcEEEEeccccccccccC-------CCceEEecCCCHHHHhhhcCEEEec---CCcchHHHHHHcCCCEEE
Confidence 5667889999999876542 2211223 3345566777666666 77766421 112233333345664322
Q ss_pred cHHHHHHHhCHHHHHHHHhhCCCCC
Q 042131 104 KASTIRIIQDKYIQKVHFSPHGIPL 128 (201)
Q Consensus 104 ~~~~~~~~~dK~~~~~~l~~~gip~ 128 (201)
=+. ..|.....+.+++.|...
T Consensus 326 ~P~----~~DQ~~nA~rve~~G~G~ 346 (406)
T COG1819 326 IPD----GADQPLNAERVEELGAGI 346 (406)
T ss_pred ecC----CcchhHHHHHHHHcCCce
Confidence 111 155555556666666553
No 170
>CHL00194 ycf39 Ycf39; Provisional
Probab=26.07 E-value=1.2e+02 Score=24.55 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=53.1
Q ss_pred ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccc----c------CC-
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIE----H------VD- 87 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~----~------i~- 87 (201)
|+.+++++.+.||+|.+++. .... ..... . -...+..|..|.+.+. .+|++..... . +.
T Consensus 13 G~~lv~~Ll~~g~~V~~l~R~~~~~-~~l~~---~-~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~ 87 (317)
T CHL00194 13 GRQIVRQALDEGYQVRCLVRNLRKA-SFLKE---W-GAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDW 87 (317)
T ss_pred HHHHHHHHHHCCCeEEEEEcChHHh-hhHhh---c-CCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhH
Confidence 57888888899999988875 2111 11100 0 1123345666665543 6676542110 0 01
Q ss_pred ---HHHHHHHHHCCC-c-ccccH---H---HHHHHhCHHHHHHHHhhCCCCC
Q 042131 88 ---VAIMEKLEQQGV-D-CQPKA---S---TIRIIQDKYIQKVHFSPHGIPL 128 (201)
Q Consensus 88 ---~~~~~~l~~~g~-~-~~~~~---~---~~~~~~dK~~~~~~l~~~gip~ 128 (201)
..+++.+.+.|+ . ++.|. + .......|..+.+++++.|++.
T Consensus 88 ~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ 139 (317)
T CHL00194 88 DGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPY 139 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCe
Confidence 134456666776 2 22222 1 1223455777888888888765
No 171
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=25.96 E-value=1e+02 Score=22.94 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=24.6
Q ss_pred EEcCCHHHHHHHHHHhcCCCCceEEeecCCCce
Q 042131 166 AVAKSEEELSSAITALGGFDRSLYIEKWAPFVK 198 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e 198 (201)
..+++.+|+..++++.....+..+||=.++..+
T Consensus 141 ~~v~~~~el~~al~~a~~~~~p~liev~~~~~~ 173 (177)
T cd02010 141 YRIESADDLLPVLERALAADGVHVIDCPVDYSE 173 (177)
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEEEecccc
Confidence 466899999999988765445588887776544
No 172
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.85 E-value=3.5e+02 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=25.7
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG 182 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~ 182 (201)
...+++.+-+ ..+.+.+.|+++|--..+ +.+|+..+.+.+.
T Consensus 118 a~~~~n~~LL-~~~a~~gkPV~lk~G~~~----------s~~e~~~A~e~i~ 158 (266)
T PRK13398 118 SRNMQNFELL-KEVGKTKKPILLKRGMSA----------TLEEWLYAAEYIM 158 (266)
T ss_pred cccccCHHHH-HHHhcCCCcEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 4455565433 444678899999974322 5667777776654
No 173
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=25.80 E-value=2.2e+02 Score=22.73 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCCCCcc---ccCCHHHHHHHHHHhCCCE-EEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPEFM---EVNDLESARRAGKQFGYPL-MVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~---~~~~~~~~~~~~~~~~~P~-VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
++..-+++++++++.+.-++ .. ..++-.+++.+.|.|+ |||-.. --.+...+++.+|+.+.+++
T Consensus 182 s~e~n~al~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~---~~~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 182 SKELNRALFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIVIKRPP---EPYGDPVVETIEELLDWLEQ 249 (249)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCC---CCCCCcccCCHHHHHHHHhC
No 174
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=25.69 E-value=38 Score=21.65 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=23.7
Q ss_pred CCchhhhhcc--------cccccccccCCCeEEEECC
Q 042131 15 PSPTIHCRRG--------RRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 15 ~~~~i~~~~g--------~~l~~aa~~~G~~v~~~~~ 43 (201)
++..|.+..| ..+++.+.+.||.|+..|.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 5667777665 3788899999999999998
No 175
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=25.68 E-value=26 Score=30.09 Aligned_cols=91 Identities=5% Similarity=-0.018 Sum_probs=46.8
Q ss_pred cHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCH--H-HHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 104 KASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDL--E-SARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 104 ~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~--~-~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
++---.+..||..+.-+=+.+. .+|. .+-... + ...+...--+...|.||..| -.|.+|.++.....+.+.-..
T Consensus 262 eP~wk~llsnKalLalLW~l~p-~hp~-LLpay~~~d~~~~~~~~~~~~~yV~KPi~g-REG~nV~i~~~g~~~~~~~g~ 338 (397)
T PHA02117 262 EPAWKMMLSNKGLLALLYERYP-DCPW-LVPAYVEDDFDRENLFTLENPKYVSKPLLS-REGNNIHIFEYGGESEDTDGN 338 (397)
T ss_pred chhHHhHhccHHHHHHHHHhcC-CCcc-cccccccccccccchhccccCCEEeccCCC-cCCCCEEEEECCeEEeccCCC
Confidence 4444457799999885544321 2332 111111 1 10000000111379999996 589999999763332211001
Q ss_pred hcCCCCceEEeecCCCcee
Q 042131 181 LGGFDRSLYIEKWAPFVKV 199 (201)
Q Consensus 181 ~~~~~~~~lvEe~i~G~e~ 199 (201)
. ....++.|+|++=+.+
T Consensus 339 y--~~~~~IyQ~~~~Lp~f 355 (397)
T PHA02117 339 Y--AEEPRVVQQLIEWGRF 355 (397)
T ss_pred C--CCCCeEEEEccCCccc
Confidence 1 2345899999886554
No 176
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=25.63 E-value=51 Score=27.41 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCCCchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh-cCCeEEe
Q 042131 13 PLPSPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV-ACGVLTV 81 (201)
Q Consensus 13 ~~~~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~-~~d~i~~ 81 (201)
-+.+.++.+++ |+.+++.++..|++|+.+|+ ........ .-.....+.+.++ .+|+++.
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~----------~~~~~~~~Ld~lL~~sDiv~l 203 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV----------DGVVGVDSLDELLAEADILTL 203 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc----------ccceecccHHHHHhhCCEEEE
Confidence 34577888763 67999999999999999997 32221111 1123345566776 8888864
No 177
>PRK10537 voltage-gated potassium channel; Provisional
Probab=25.55 E-value=43 Score=28.68 Aligned_cols=20 Identities=0% Similarity=-0.174 Sum_probs=16.0
Q ss_pred ccccccccccCCCeEEEECC
Q 042131 24 GRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~ 43 (201)
|+.+++.+++.|+++++++.
T Consensus 252 g~~v~~~L~~~g~~vvVId~ 271 (393)
T PRK10537 252 AINTYLGLRQRGQAVTVIVP 271 (393)
T ss_pred HHHHHHHHHHCCCCEEEEEC
Confidence 45777788888999988886
No 178
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=25.31 E-value=52 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHhCHHHHHHHHhhCCCCCCCccccCC
Q 042131 110 IIQDKYIQKVHFSPHGIPLPEFMEVND 136 (201)
Q Consensus 110 ~~~dK~~~~~~l~~~gip~p~~~~~~~ 136 (201)
...|.+...+++++.||++|.+.++..
T Consensus 42 ~~~nE~~~~~lA~~~Gi~v~~~~l~~~ 68 (81)
T PF07805_consen 42 LVENEYACMRLARAAGIPVPETRLIRF 68 (81)
T ss_dssp HHHHHHHHHHHHHHTT-----EEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 345666667889999999999887543
No 179
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.95 E-value=31 Score=31.42 Aligned_cols=54 Identities=7% Similarity=-0.120 Sum_probs=32.3
Q ss_pred Cchhhhh----cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh
Q 042131 16 SPTIHCR----RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV 74 (201)
Q Consensus 16 ~~~i~~~----~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~ 74 (201)
.+++.+. -|+.+++.+++.|++++++|. ++.- ...+. .-...+..|-.+.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v-~~~~~----~g~~v~~GDat~~~~L~ 458 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHI-ETLRK----FGMKVFYGDATRMDLLE 458 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHH-HHHHh----cCCeEEEEeCCCHHHHH
Confidence 3455544 356788889999999999987 3211 11100 02234566777777665
No 180
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=24.76 E-value=3.4e+02 Score=21.21 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 86 VDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 86 i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
+++-+++...++|+.+.-+..-+-........+ .+....++..+++++++|+||=. +....
T Consensus 118 ~dHVLAKlAa~n~VAIe~~L~plL~~~G~~Rar--------------~L~~~r~~l~L~rKYd~P~VISS-----~A~s~ 178 (216)
T PRK03892 118 IDHVLARMAAKRGVAIGFSLSPLLRANPYERAN--------------ILRFMMKAWQLVNKYKVPRFITS-----SAESK 178 (216)
T ss_pred ccHHHHHHHHHcCeEEEEecHHHHhhCchhHHH--------------HHHHHHHHHHHHHHcCCCEEEec-----Ccchh
Confidence 455555666666664444433322222222222 33455667778889999999853 56677
Q ss_pred EEcCCHHHHHHHHHHhc
Q 042131 166 AVAKSEEELSSAITALG 182 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~ 182 (201)
+=++++.|+......++
T Consensus 179 ~~lRsPRdl~aL~~~iG 195 (216)
T PRK03892 179 WEVRGPRDLMSLGINIG 195 (216)
T ss_pred ccCCCHHHHHHHHHHhC
Confidence 77888888877766554
No 181
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=24.76 E-value=1.4e+02 Score=22.55 Aligned_cols=34 Identities=26% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCC
Q 042131 162 GRGNAVAKSEEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
..+.+.+++.+||.+++++.....+..+||=.++
T Consensus 130 ~~~~~~v~~~~el~~al~~a~~~~~p~lIev~~~ 163 (188)
T cd03371 130 YRAVYEVPSLEELVAALAKALAADGPAFIEVKVR 163 (188)
T ss_pred CceEEecCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3344566788888888877654333467766554
No 182
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.64 E-value=37 Score=25.81 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=26.7
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNF 67 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 67 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+....
T Consensus 129 ~~~~~ak~~g~~iI~iT~~~~s~l~~~-------ad~~l~~~~ 164 (192)
T PRK00414 129 KAIEAARAKGMKVITLTGKDGGKMAGL-------ADIEIRVPH 164 (192)
T ss_pred HHHHHHHHCCCeEEEEeCCCCChhHHh-------CCEEEEeCC
Confidence 667889999999999998 77777777 666554433
No 183
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=24.51 E-value=1.2e+02 Score=19.84 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC-CCccccCCH---H---HHHHHHHHhCCCEEEeec
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL-PEFMEVNDL---E---SARRAGKQFGYPLMVKSK 156 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~-p~~~~~~~~---~---~~~~~~~~~~~P~VvKp~ 156 (201)
.+++.+.+.|..++.+..+. ++|+++|+++ .-....... + ++.+.+++-...+||=-.
T Consensus 4 ~~a~~l~~lG~~i~AT~gTa----------~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 4 PLAKRLAELGFEIYATEGTA----------KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHHHHTTSEEEEEHHHH----------HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHCCCEEEEChHHH----------HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 45677888888666665543 6788999983 333333333 1 255555554555555443
No 184
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.42 E-value=38 Score=23.28 Aligned_cols=26 Identities=0% Similarity=-0.033 Sum_probs=20.7
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
.+++.+++.|.++++++. .+.+..++
T Consensus 78 ~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 78 EAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred HHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 466789999999999988 66666666
No 185
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=24.14 E-value=1.4e+02 Score=22.55 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.3
Q ss_pred CCCCe--EEcCCHHHHHHHHHHhcCCCCceEEeecCCCc
Q 042131 161 DGRGN--AVAKSEEELSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 161 ~g~gv--~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
|.+++ ..+++.+|+..++++.....+..+||=+++..
T Consensus 148 G~~~~~~~~v~~~~el~~al~~al~~~gp~vIev~~~C~ 186 (193)
T cd03375 148 GATFVARGFSGDIKQLKEIIKKAIQHKGFSFVEVLSPCP 186 (193)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEEEECCCC
Confidence 44444 35788999999998866444558888877754
No 186
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=24.13 E-value=1.1e+02 Score=24.65 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=34.0
Q ss_pred HhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEE
Q 042131 111 IQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLM 152 (201)
Q Consensus 111 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~V 152 (201)
..--.-|+.+.++.|=|-..+.++.+-.+-.++++.+++|++
T Consensus 213 vGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw 254 (274)
T TIGR01658 213 VGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFV 254 (274)
T ss_pred cchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeE
Confidence 344455777778889888999999998888888999999985
No 187
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=23.70 E-value=1.4e+02 Score=22.03 Aligned_cols=29 Identities=24% Similarity=0.121 Sum_probs=20.1
Q ss_pred EEcCCHHHHHHHHHHhcCCCCceEEeecC
Q 042131 166 AVAKSEEELSSAITALGGFDRSLYIEKWA 194 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~~~~~~lvEe~i 194 (201)
..+++.+|++.+++++....+..+||=.+
T Consensus 146 ~~v~~~~el~~al~~a~~~~~p~lIev~v 174 (175)
T cd02009 146 RRVSSLDELEQALESALAQDGPHVIEVKT 174 (175)
T ss_pred eeCCCHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 45778999988888765444447777544
No 188
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=23.50 E-value=1.7e+02 Score=27.05 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=26.6
Q ss_pred hCHHHHHHHHhhCCCCCCCc-cccCCHHHHHHHHHHh
Q 042131 112 QDKYIQKVHFSPHGIPLPEF-MEVNDLESARRAGKQF 147 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~-~~~~~~~~~~~~~~~~ 147 (201)
.+....-++|.++|++++++ ..+++.+++.++.+.+
T Consensus 236 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ei~~~~~~~ 272 (665)
T PRK07956 236 DSQSEALEFLKAWGFPVNPYRKLCTSIEEVLAFYEEI 272 (665)
T ss_pred CCHHHHHHHHHHCCCCcCCceEeeCCHHHHHHHHHHH
Confidence 35666777889999998764 5678888888776544
No 189
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=23.30 E-value=3.5e+02 Score=21.65 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCEEEeecCCCCCCCCeE-EcCCHHHHHHHHHHhc
Q 042131 137 LESARRAGKQFGYPLMVKSKSLAYDGRGNA-VAKSEEELSSAITALG 182 (201)
Q Consensus 137 ~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~-~~~~~~el~~~~~~~~ 182 (201)
.+.+...+.+.+|-+|.=...++|.|.|-. +=++.+||..+++.+.
T Consensus 55 ~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~ 101 (299)
T KOG4840|consen 55 TTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQ 101 (299)
T ss_pred HHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhh
Confidence 455555666777777766666677778766 4456677877777654
No 190
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=23.21 E-value=1.8e+02 Score=23.13 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCCCCCccccCC-HHHHHHH
Q 042131 114 KYIQKVHFSPHGIPLPEFMEVND-LESARRA 143 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~~~~~~~-~~~~~~~ 143 (201)
-....++....|+|+|.-++++. ..|..+.
T Consensus 36 E~~~~~La~~LgVpiPq~rvi~~~~~E~~e~ 66 (238)
T cd05124 36 EYFLSKLAKILGLPIPQMRVLEWNSSEFTEM 66 (238)
T ss_pred HHHHHHHHHHhCCCCCceeeeecCCHHHHHH
Confidence 34455677888999999988765 5554443
No 191
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.92 E-value=1.7e+02 Score=22.96 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=53.1
Q ss_pred hhcCCeEEeccccCC--HHHHHHHHHCCCc-c-cccHHHHHHHhCHHHHHHHHhhCCCCC--CCc-cccC--CHHHHHHH
Q 042131 73 VVACGVLTVEIEHVD--VAIMEKLEQQGVD-C-QPKASTIRIIQDKYIQKVHFSPHGIPL--PEF-MEVN--DLESARRA 143 (201)
Q Consensus 73 l~~~d~i~~~~~~i~--~~~~~~l~~~g~~-~-~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~-~~~~--~~~~~~~~ 143 (201)
+..+|++..-..+++ ..+...+.+.|+. + .++..-- ..-+..+++.+++.|+.+ |+. ..+. ....+.++
T Consensus 49 i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F 126 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEF 126 (217)
T ss_pred CCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCccccccCCCCChhHHHH
Confidence 337787654333333 3555666666662 2 2321111 455668888999998665 653 3333 34667889
Q ss_pred HHHhCCCEE-EeecCCCCCCCCeEEcCCH
Q 042131 144 GKQFGYPLM-VKSKSLAYDGRGNAVAKSE 171 (201)
Q Consensus 144 ~~~~~~P~V-vKp~~g~~~g~gv~~~~~~ 171 (201)
++.||.|-+ |+-..+ .=+.|.++++.
T Consensus 127 ~~~fGkP~~ei~v~~~--~I~~V~VlR~a 153 (217)
T PF02593_consen 127 AEYFGKPKVEIEVENG--KIKDVKVLRSA 153 (217)
T ss_pred HHHhCCceEEEEecCC--cEEEEEEEecC
Confidence 999999953 322221 12366666643
No 192
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.86 E-value=1.8e+02 Score=24.38 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=49.1
Q ss_pred hCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCC--CEEEeecCCCCCCCCeEEcC-CHHHHHHHHHHhc
Q 042131 112 QDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGY--PLMVKSKSLAYDGRGNAVAK-SEEELSSAITALG 182 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--P~VvKp~~g~~~g~gv~~~~-~~~el~~~~~~~~ 182 (201)
-.|.-+-+.|.+.|.--|++. .|.-++...+.+.+- +++.=|+..| .-+|.+.+. .-.++.+++..+.
T Consensus 247 VqKgTlvE~lw~~g~YRPPwL--WSivEVL~~~~~~~~~~~i~sdp~G~g-s~RGphNc~~cd~~v~~aI~~fs 317 (358)
T COG1244 247 VQKGTLVEKLWRRGLYRPPWL--WSIVEVLREAKKTGPMLRILSDPVGAG-SDRGPHNCGKCDKRVADAIRKFS 317 (358)
T ss_pred cchhhHHHHHHHcCCCCCchH--HHHHHHHHHHHhcCCCCceeecCCCCC-CCCCCcccchhcHHHHHHHHHhc
Confidence 457777888888898888854 577777766666554 7888887644 556999884 4447888887765
No 193
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=22.77 E-value=1.6e+02 Score=24.29 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=24.4
Q ss_pred CHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHHh
Q 042131 113 DKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQF 147 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~~ 147 (201)
+....-++|+++|+++++ +..+.+.+++.++.+.+
T Consensus 228 t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 263 (307)
T cd00114 228 TQSEALAFLKEWGFPVSPETRLCKNIEEVLAFYDEI 263 (307)
T ss_pred CHHHHHHHHHHCCCCCCCCeEEeCCHHHHHHHHHHH
Confidence 455566678888888874 55677788877766554
No 194
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=22.66 E-value=2.2e+02 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=26.7
Q ss_pred hCHHHHHHHHhhCCCCCCCcc-ccCCHHHHHHHHHHh
Q 042131 112 QDKYIQKVHFSPHGIPLPEFM-EVNDLESARRAGKQF 147 (201)
Q Consensus 112 ~dK~~~~~~l~~~gip~p~~~-~~~~~~~~~~~~~~~ 147 (201)
.+....-++|+++|++++++. .+++.+++.++.+.+
T Consensus 224 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ei~~~~~~~ 260 (652)
T TIGR00575 224 ATQYEALAWLKKWGFPVSPHIRLCDSIEEVLEYYREI 260 (652)
T ss_pred CCHHHHHHHHHHCCCCCCCCeEeeCCHHHHHHHHHHH
Confidence 355666778899999996654 678888888776544
No 195
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.25 E-value=1.7e+02 Score=20.80 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=4.0
Q ss_pred HHHHCCC
Q 042131 93 KLEQQGV 99 (201)
Q Consensus 93 ~l~~~g~ 99 (201)
.|+..|+
T Consensus 25 ~l~~~Gf 31 (132)
T TIGR00640 25 AYADLGF 31 (132)
T ss_pred HHHhCCc
Confidence 4555665
No 196
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=22.01 E-value=4.8e+02 Score=21.90 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=28.0
Q ss_pred ccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC-CC-CceEEee
Q 042131 133 EVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG-FD-RSLYIEK 192 (201)
Q Consensus 133 ~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~-~~-~~~lvEe 192 (201)
.+++.+- .+.+.+.+.|+++|--.. .+.+|+..+.+.+.. .+ +-+|+|.
T Consensus 186 ~~~N~~L-L~~va~~~kPViLk~G~~----------~ti~E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 186 NMQNFDL-LKEVGKTNKPVLLKRGMS----------ATIEEWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred cccCHHH-HHHHHcCCCcEEEeCCCC----------CCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3344432 334456688999997432 267788888877642 22 2355554
No 197
>PRK13744 conjugal transfer protein TrbG; Provisional
Probab=21.57 E-value=70 Score=19.73 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=11.0
Q ss_pred CCCCCCccCCCCCCC
Q 042131 1 MTPPLGFCSSPCPLP 15 (201)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (201)
+|||+-+.++|.|.+
T Consensus 23 itpplcevsapepda 37 (83)
T PRK13744 23 ITPPLCEVSAPEPDA 37 (83)
T ss_pred CCCccccccCCCCCC
Confidence 488887777776665
No 198
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.56 E-value=23 Score=24.33 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=21.8
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
..++.|++.|.+++.++. .+.+..+.
T Consensus 71 ~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 71 ELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp HHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred hhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 566789999999999998 77777777
No 199
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=21.23 E-value=3.6e+02 Score=22.59 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHH---HHHHHHHhc
Q 042131 137 LESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEE---LSSAITALG 182 (201)
Q Consensus 137 ~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~e---l~~~~~~~~ 182 (201)
.+++.+.+++.|. -.|....|.||-.+.++.+.++ +.++|++.+
T Consensus 300 l~~li~~a~~~ga--~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~G 346 (358)
T TIGR01220 300 LKALCDAAEAYGG--AAKPSGAGGGDCGIAILDAEADITHVRQRWETAG 346 (358)
T ss_pred HHHHHHHHhhcCc--eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHCC
Confidence 3555666677776 6898754422224557775544 556665544
No 200
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.84 E-value=2.9e+02 Score=23.90 Aligned_cols=28 Identities=4% Similarity=-0.097 Sum_probs=22.8
Q ss_pred Cchhhhh----cccccccccccCCCeEEEECC
Q 042131 16 SPTIHCR----RGRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 16 ~~~i~~~----~g~~l~~aa~~~G~~v~~~~~ 43 (201)
..+++++ +|+.+++.+++.|+.|.+.|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECC
Confidence 4456655 678899999999999999986
No 201
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.73 E-value=1.3e+02 Score=17.47 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=18.7
Q ss_pred HHHHHHHhhCCCCCCCccccCCHHHHHHHHHH----hCCCEEE
Q 042131 115 YIQKVHFSPHGIPLPEFMEVNDLESARRAGKQ----FGYPLMV 153 (201)
Q Consensus 115 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~----~~~P~Vv 153 (201)
...+++|++.|++. ...-+++.++..+.+.+ .++|.|.
T Consensus 13 ~~~~~~L~~~~i~y-~~~dv~~~~~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 13 KKAKEFLDEKGIPY-EEVDVDEDEEAREELKELSGVRTVPQVF 54 (60)
T ss_dssp HHHHHHHHHTTBEE-EEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred HHHHHHHHHcCCee-eEcccccchhHHHHHHHHcCCCccCEEE
Confidence 34567777777664 22223333233333322 3577665
No 202
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=20.45 E-value=2e+02 Score=18.50 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.7
Q ss_pred CCCCCeEEcCCHHHHHHHHHH
Q 042131 160 YDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 160 ~~g~gv~~~~~~~el~~~~~~ 180 (201)
..|+|.|++.+.+-++.+...
T Consensus 36 ~~GRGaYvc~~~~c~~~a~kk 56 (79)
T cd00279 36 LPGRGAYVCADRECIEKAKKK 56 (79)
T ss_pred CCCCeEEEcCCHHHHHHHHHh
Confidence 369999999999988887754
No 203
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=20.38 E-value=1.4e+02 Score=19.04 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=18.5
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHH
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~ 180 (201)
+++-+... ..|+|.|++.+.+-+..+...
T Consensus 27 i~~D~~~k-~~GRGaYvc~~~~c~~~a~kk 55 (78)
T PF04296_consen 27 IVPDPSGK-LPGRGAYVCPDPECLEKAKKK 55 (78)
T ss_dssp EEEETTS----SEEEEEES-HHHHHHHHHH
T ss_pred EEECCCCC-CCCCeEEEcCCHHHHHHHHHH
Confidence 55555543 489999999999877766643
No 204
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=20.31 E-value=2.3e+02 Score=17.87 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=20.9
Q ss_pred HHhCHHHHHHHHhhCCCCCCCccccCCHHHHHH
Q 042131 110 IIQDKYIQKVHFSPHGIPLPEFMEVNDLESARR 142 (201)
Q Consensus 110 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~ 142 (201)
.-.+++.|.++|.++||+ .. .+.+++.+
T Consensus 44 ag~s~~eF~~~L~~~gI~-~~----~~~eel~~ 71 (76)
T PF03683_consen 44 AGMSRWEFLELLKERGIP-IN----YDEEELEE 71 (76)
T ss_pred hCCCHHHHHHHHHHCCCC-CC----CCHHHHHH
Confidence 345999999999999999 43 35555554
No 205
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=20.10 E-value=1.8e+02 Score=22.85 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=25.8
Q ss_pred CCCCeE--EcCCHHHHHHHHHHhcC-CCCceEEeecCCCce
Q 042131 161 DGRGNA--VAKSEEELSSAITALGG-FDRSLYIEKWAPFVK 198 (201)
Q Consensus 161 ~g~gv~--~~~~~~el~~~~~~~~~-~~~~~lvEe~i~G~e 198 (201)
|..+++ .+.+.+++..++++... .++..+|+=+++..+
T Consensus 166 G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 166 GCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYTPCIT 206 (237)
T ss_pred CCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 445554 46778888888887654 555588887776543
No 206
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=20.08 E-value=81 Score=26.92 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=25.3
Q ss_pred CCCCchhhhhc----ccccccccccCCCeEEEECC
Q 042131 13 PLPSPTIHCRR----GRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 13 ~~~~~~i~~~~----g~~l~~aa~~~G~~v~~~~~ 43 (201)
.+.+.++.+++ |+.+++.++..|++|+++|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 35567787763 67899999999999999986
No 207
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=20.02 E-value=1.7e+02 Score=22.09 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCc-cccCCHHHHHHHHHH---hCCCEEEeecCCC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEF-MEVNDLESARRAGKQ---FGYPLMVKSKSLA 159 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~-~~~~~~~~~~~~~~~---~~~P~VvKp~~g~ 159 (201)
.+...+++.|+.++..+.- .-=..++..++..|-|. ... ..+-+...+..+.+. -.-|.+..+..|.
T Consensus 54 ~t~~~~~~~gv~vi~tpG~----GYv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~~~~G~ 126 (177)
T COG2266 54 KTKEYLESVGVKVIETPGE----GYVEDLRFALESLGTPILVVSADLPFLNPSIIDSVIDAAASVEVPIVTVVKAGR 126 (177)
T ss_pred hHHHHHHhcCceEEEcCCC----ChHHHHHHHHHhcCCceEEEecccccCCHHHHHHHHHHHhhccCceeEeeccCc
Confidence 3455666676644332211 01123445666666432 110 011123333333333 3478888887753
Done!