Query 042131
Match_columns 201
No_of_seqs 134 out of 1846
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k5i_A Phosphoribosyl-aminoimi 100.0 3.7E-30 1.3E-34 216.8 14.4 177 15-201 23-212 (403)
2 3orq_A N5-carboxyaminoimidazol 100.0 3.5E-30 1.2E-34 215.2 13.8 178 14-201 10-197 (377)
3 4e4t_A Phosphoribosylaminoimid 100.0 7.2E-30 2.5E-34 216.0 14.1 178 13-201 32-223 (419)
4 3q2o_A Phosphoribosylaminoimid 100.0 1.3E-29 4.3E-34 212.5 14.9 179 13-201 11-199 (389)
5 1kjq_A GART 2, phosphoribosylg 99.9 2.3E-27 7.7E-32 198.6 15.2 178 16-201 11-205 (391)
6 3aw8_A PURK, phosphoribosylami 99.9 1.8E-27 6.2E-32 198.0 14.0 167 24-201 11-183 (369)
7 2dwc_A PH0318, 433AA long hypo 99.9 2.9E-27 9.9E-32 200.6 14.1 178 16-201 19-213 (433)
8 3ax6_A Phosphoribosylaminoimid 99.9 5E-27 1.7E-31 196.0 10.8 162 24-201 13-180 (380)
9 4dim_A Phosphoribosylglycinami 99.9 1.2E-26 4.1E-31 195.0 12.1 177 16-201 7-198 (403)
10 3eth_A Phosphoribosylaminoimid 99.9 9.8E-27 3.4E-31 192.7 8.1 154 18-201 3-164 (355)
11 3ouz_A Biotin carboxylase; str 99.9 2.9E-25 1E-29 189.0 13.0 177 17-201 7-215 (446)
12 2ip4_A PURD, phosphoribosylami 99.9 1.1E-24 3.7E-29 184.0 14.0 174 18-201 2-190 (417)
13 3vot_A L-amino acid ligase, BL 99.9 5.2E-25 1.8E-29 186.3 11.8 175 17-201 6-208 (425)
14 2w70_A Biotin carboxylase; lig 99.9 5.9E-25 2E-29 187.2 11.3 176 18-201 4-212 (449)
15 1ulz_A Pyruvate carboxylase N- 99.9 6.2E-25 2.1E-29 187.2 11.3 176 18-201 4-210 (451)
16 2vpq_A Acetyl-COA carboxylase; 99.9 3.4E-24 1.1E-28 182.7 15.4 170 24-201 13-210 (451)
17 2yw2_A Phosphoribosylamine--gl 99.9 1.3E-24 4.3E-29 183.9 12.5 175 18-201 2-195 (424)
18 2yrx_A Phosphoribosylglycinami 99.9 1.8E-24 6.1E-29 184.5 12.7 177 16-201 21-216 (451)
19 2xcl_A Phosphoribosylamine--gl 99.9 1.1E-24 3.6E-29 184.2 10.2 175 18-201 2-195 (422)
20 2z04_A Phosphoribosylaminoimid 99.9 8.4E-25 2.9E-29 181.6 8.4 164 24-201 13-179 (365)
21 2qk4_A Trifunctional purine bi 99.9 4.1E-24 1.4E-28 182.2 11.5 176 17-201 25-222 (452)
22 2dzd_A Pyruvate carboxylase; b 99.9 9.6E-24 3.3E-28 180.4 12.7 177 17-201 7-216 (461)
23 3glk_A Acetyl-COA carboxylase 99.9 5.2E-24 1.8E-28 184.9 10.0 178 16-201 40-283 (540)
24 4eg0_A D-alanine--D-alanine li 99.9 8.9E-24 3.1E-28 172.4 9.8 158 23-201 33-199 (317)
25 3jrx_A Acetyl-COA carboxylase 99.9 1.5E-23 5.1E-28 183.1 11.5 177 17-201 57-299 (587)
26 3u9t_A MCC alpha, methylcroton 99.9 2.3E-24 7.9E-29 191.4 6.0 178 16-201 28-237 (675)
27 3lp8_A Phosphoribosylamine-gly 99.9 4.9E-23 1.7E-27 175.3 13.9 176 17-201 22-216 (442)
28 4ffl_A PYLC; amino acid, biosy 99.9 3.6E-23 1.2E-27 171.7 11.7 157 17-201 2-170 (363)
29 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.4E-22 4.9E-27 163.8 13.8 161 19-201 18-190 (306)
30 2pbz_A Hypothetical protein; N 99.9 3.1E-25 1.1E-29 180.9 -2.3 155 23-200 12-172 (320)
31 3n6r_A Propionyl-COA carboxyla 99.9 7.9E-24 2.7E-28 188.2 5.9 176 18-201 4-211 (681)
32 2r7k_A 5-formaminoimidazole-4- 99.9 9.2E-24 3.2E-28 175.0 5.8 166 18-200 20-208 (361)
33 1vkz_A Phosphoribosylamine--gl 99.9 9.6E-23 3.3E-27 172.0 11.7 169 18-201 17-199 (412)
34 4fu0_A D-alanine--D-alanine li 99.9 1.7E-22 5.9E-27 167.5 12.8 112 89-201 114-229 (357)
35 3i12_A D-alanine-D-alanine lig 99.9 1.8E-22 6.3E-27 167.7 12.8 184 17-201 17-231 (364)
36 3e5n_A D-alanine-D-alanine lig 99.9 1.2E-22 4.2E-27 170.0 11.8 183 18-201 37-250 (386)
37 3mjf_A Phosphoribosylamine--gl 99.9 2.6E-22 8.9E-27 170.3 13.1 176 17-201 4-200 (431)
38 2r85_A PURP protein PF1517; AT 99.9 8.8E-23 3E-27 166.9 9.8 159 24-200 13-182 (334)
39 2i87_A D-alanine-D-alanine lig 99.9 5.1E-22 1.8E-26 165.0 14.2 183 17-201 17-223 (364)
40 3r5x_A D-alanine--D-alanine li 99.9 8.4E-23 2.9E-27 165.6 8.4 162 19-201 19-185 (307)
41 1a9x_A Carbamoyl phosphate syn 99.9 6.2E-22 2.1E-26 183.9 15.2 169 24-201 30-218 (1073)
42 1a9x_A Carbamoyl phosphate syn 99.9 8.8E-22 3E-26 182.8 15.9 181 14-201 557-764 (1073)
43 2pn1_A Carbamoylphosphate synt 99.9 1.8E-22 6.1E-27 165.2 9.9 171 17-201 5-197 (331)
44 1ehi_A LMDDL2, D-alanine:D-lac 99.9 1.1E-21 3.9E-26 163.7 14.3 183 17-201 17-227 (377)
45 3se7_A VANA; alpha-beta struct 99.9 5E-22 1.7E-26 164.0 9.6 182 17-201 17-217 (346)
46 3k3p_A D-alanine--D-alanine li 99.9 9.3E-22 3.2E-26 164.4 10.2 182 19-201 53-253 (383)
47 1e4e_A Vancomycin/teicoplanin 99.9 9.3E-22 3.2E-26 162.1 9.1 182 17-201 17-217 (343)
48 1uc8_A LYSX, lysine biosynthes 99.9 4.2E-22 1.4E-26 158.9 6.8 157 23-197 12-175 (280)
49 3hbl_A Pyruvate carboxylase; T 99.9 3E-22 1E-26 186.1 6.2 177 17-201 5-214 (1150)
50 3va7_A KLLA0E08119P; carboxyla 99.9 2.3E-22 7.8E-27 187.5 4.7 177 17-201 32-239 (1236)
51 3tqt_A D-alanine--D-alanine li 99.8 6.7E-21 2.3E-25 158.7 13.0 184 17-201 18-232 (372)
52 1w96_A ACC, acetyl-coenzyme A 99.8 7.7E-21 2.6E-25 165.9 13.9 178 16-201 47-289 (554)
53 2qf7_A Pyruvate carboxylase pr 99.8 2.1E-21 7.1E-26 180.8 7.7 169 25-201 27-230 (1165)
54 3lwb_A D-alanine--D-alanine li 99.8 1E-20 3.4E-25 157.7 10.7 112 89-201 126-240 (373)
55 3vmm_A Alanine-anticapsin liga 99.8 1E-19 3.6E-24 155.9 15.3 122 75-198 102-235 (474)
56 2cqy_A Propionyl-COA carboxyla 99.8 2.3E-21 8E-26 133.8 3.2 92 109-201 4-104 (108)
57 2pvp_A D-alanine-D-alanine lig 99.8 3.1E-19 1E-23 148.5 9.8 110 89-200 124-237 (367)
58 2fb9_A D-alanine:D-alanine lig 99.8 1.1E-18 3.6E-23 142.8 8.9 123 75-201 76-203 (322)
59 1gsa_A Glutathione synthetase; 99.7 1.5E-18 5.1E-23 140.4 5.7 164 21-196 18-203 (316)
60 1z2n_X Inositol 1,3,4-trisphos 99.7 8.2E-18 2.8E-22 137.2 10.0 145 26-200 26-184 (324)
61 3ln6_A Glutathione biosynthesi 99.7 4.2E-18 1.4E-22 152.5 8.0 143 22-201 428-575 (750)
62 3ln7_A Glutathione biosynthesi 99.7 2.5E-17 8.7E-22 147.3 7.4 100 101-201 477-581 (757)
63 3df7_A Putative ATP-grAsp supe 99.6 4.2E-16 1.4E-20 126.5 7.8 101 75-201 69-172 (305)
64 1wr2_A Hypothetical protein PH 99.6 4.3E-16 1.5E-20 122.2 7.1 90 111-201 19-124 (238)
65 2q7d_A Inositol-tetrakisphosph 99.6 3.3E-15 1.1E-19 123.1 6.6 98 97-201 100-211 (346)
66 1i7n_A Synapsin II; synapse, p 99.5 2.5E-14 8.5E-19 115.8 10.3 104 88-195 88-198 (309)
67 2p0a_A Synapsin-3, synapsin II 99.5 3.8E-14 1.3E-18 116.1 7.4 106 89-199 106-218 (344)
68 1pk8_A RAT synapsin I; ATP bin 99.5 1.1E-13 3.9E-18 115.5 9.8 106 89-199 201-313 (422)
69 2nu8_B SCS-beta, succinyl-COA 99.4 8.9E-13 3E-17 110.0 11.3 89 113-201 4-110 (388)
70 3ufx_B Succinyl-COA synthetase 99.4 1.1E-12 3.7E-17 109.8 10.8 88 113-201 4-102 (397)
71 2fp4_B Succinyl-COA ligase [GD 99.4 8.6E-13 2.9E-17 110.3 9.9 88 113-201 4-117 (395)
72 3t7a_A Inositol pyrophosphate 98.7 5.6E-10 1.9E-14 89.1 -2.9 120 75-195 57-205 (330)
73 3mwd_A ATP-citrate synthase; A 98.0 8.4E-06 2.9E-10 68.5 6.8 86 115-200 9-120 (425)
74 3pff_A ATP-citrate synthase; p 97.8 3.3E-05 1.1E-09 69.7 6.3 86 115-201 9-121 (829)
75 3tig_A TTL protein; ATP-grAsp, 96.9 0.0019 6.5E-08 53.4 6.8 44 148-195 147-190 (380)
76 3n6x_A Putative glutathionylsp 96.7 0.002 6.7E-08 54.8 5.4 106 89-197 297-412 (474)
77 2io8_A Bifunctional glutathion 93.1 0.027 9.4E-07 49.4 1.4 98 89-199 474-576 (619)
78 2vob_A Trypanothione synthetas 76.2 1.5 5.2E-05 38.7 2.9 99 90-199 488-591 (652)
79 3k1t_A Glutamate--cysteine lig 71.8 3.7 0.00013 33.8 3.9 47 151-198 280-335 (432)
80 1b04_A Protein (DNA ligase); D 42.0 38 0.0013 27.0 5.0 35 113-147 233-268 (318)
81 3jsl_A DNA ligase; NAD+-depend 36.8 52 0.0018 26.2 5.0 33 114-146 232-265 (318)
82 3uq8_A DNA ligase; adenylated 36.7 58 0.002 26.0 5.3 33 114-146 238-271 (322)
83 2wqp_A Polysialic acid capsule 36.7 1.7E+02 0.0056 23.6 8.1 88 90-196 96-185 (349)
84 3g8r_A Probable spore coat pol 35.3 1.7E+02 0.006 23.5 9.4 86 90-194 83-170 (350)
85 1vli_A Spore coat polysacchari 34.6 1.9E+02 0.0064 23.6 10.3 88 89-195 105-195 (385)
86 3l9w_A Glutathione-regulated p 34.3 3.9 0.00013 33.9 -2.0 21 23-43 15-35 (413)
87 2e5j_A Methenyltetrahydrofolat 33.9 56 0.0019 20.2 4.0 47 136-183 32-78 (97)
88 2jvr_A Nucleolar protein 3; RN 32.1 1E+02 0.0036 19.9 5.3 48 136-183 41-89 (111)
89 3fs2_A 2-dehydro-3-deoxyphosph 29.4 1.5E+02 0.0052 23.3 6.5 72 92-182 106-179 (298)
90 1rwu_A Hypothetical UPF0250 pr 28.6 1.3E+02 0.0043 19.8 7.1 45 138-185 51-103 (109)
91 3kzx_A HAD-superfamily hydrola 28.1 1.4E+02 0.0047 21.1 5.9 65 114-181 162-228 (231)
92 2fi0_A Conserved domain protei 27.8 38 0.0013 20.9 2.3 54 89-151 24-77 (81)
93 3gon_A Phosphomevalonate kinas 27.3 58 0.002 25.2 3.9 58 138-197 275-332 (335)
94 2xbl_A Phosphoheptose isomeras 27.3 17 0.00057 26.1 0.6 35 26-67 134-169 (198)
95 4glw_A DNA ligase; inhibitor, 26.5 1E+02 0.0035 24.3 5.1 32 114-145 227-259 (305)
96 3umb_A Dehalogenase-like hydro 25.8 1.3E+02 0.0044 21.2 5.4 68 113-180 157-228 (233)
97 1vr6_A Phospho-2-dehydro-3-deo 25.6 1.8E+02 0.0061 23.4 6.4 41 131-182 197-237 (350)
98 3trj_A Phosphoheptose isomeras 25.5 27 0.00091 25.5 1.4 26 26-51 132-158 (201)
99 1rw1_A Conserved hypothetical 25.2 97 0.0033 20.1 4.1 81 89-178 15-113 (114)
100 3p5t_L Cleavage and polyadenyl 25.0 57 0.0019 19.8 2.8 20 164-183 48-67 (90)
101 1o60_A 2-dehydro-3-deoxyphosph 24.8 1.2E+02 0.0041 23.6 5.2 71 92-181 83-155 (292)
102 1tk9_A Phosphoheptose isomeras 24.8 13 0.00045 26.4 -0.4 35 26-67 128-163 (188)
103 2cpx_A Hypothetical protein FL 24.6 92 0.0031 19.7 3.9 48 136-183 38-89 (115)
104 1zco_A 2-dehydro-3-deoxyphosph 24.4 1.7E+02 0.0059 22.3 6.0 73 91-182 80-154 (262)
105 1vs1_A 3-deoxy-7-phosphoheptul 24.2 2.5E+02 0.0084 21.6 7.5 55 129-194 127-183 (276)
106 4hv4_A UDP-N-acetylmuramate--L 24.0 88 0.003 26.2 4.6 106 16-127 22-150 (494)
107 1zau_A DNA ligase; AMP; HET: D 23.8 81 0.0028 25.2 4.0 31 116-146 251-282 (328)
108 1m3s_A Hypothetical protein YC 23.7 18 0.00061 25.7 0.1 26 26-51 97-123 (186)
109 3fwz_A Inner membrane protein 23.7 18 0.0006 24.5 0.1 28 16-43 7-38 (140)
110 3dhn_A NAD-dependent epimerase 23.3 40 0.0014 24.3 2.1 58 17-80 5-72 (227)
111 3sho_A Transcriptional regulat 23.0 17 0.00058 25.8 -0.1 33 26-65 105-138 (187)
112 3dqp_A Oxidoreductase YLBE; al 22.3 37 0.0013 24.5 1.7 50 24-80 13-68 (219)
113 2wfl_A Polyneuridine-aldehyde 22.2 23 0.00079 26.3 0.5 30 14-43 8-45 (264)
114 2xhz_A KDSD, YRBH, arabinose 5 22.1 17 0.00058 25.7 -0.2 26 26-51 114-140 (183)
115 3m9l_A Hydrolase, haloacid deh 21.6 1.5E+02 0.0052 20.5 5.0 68 115-183 131-200 (205)
116 1ta8_A DNA ligase, NAD-depende 21.3 1.2E+02 0.0039 24.3 4.5 34 113-146 239-273 (332)
117 1vim_A Hypothetical protein AF 20.8 15 0.00052 26.7 -0.7 32 26-64 107-139 (200)
118 2owo_A DNA ligase; protein-DNA 20.5 1.3E+02 0.0045 26.6 5.0 34 113-146 238-272 (671)
119 3sz8_A 2-dehydro-3-deoxyphosph 20.4 1.7E+02 0.006 22.7 5.2 71 92-181 85-157 (285)
120 3nvt_A 3-deoxy-D-arabino-heptu 20.3 2.1E+02 0.0073 23.2 6.0 51 131-192 233-284 (385)
121 2la6_A RNA-binding protein FUS 20.1 95 0.0032 19.1 3.2 20 164-183 66-85 (99)
No 1
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.97 E-value=3.7e-30 Score=216.80 Aligned_cols=177 Identities=37% Similarity=0.540 Sum_probs=158.5
Q ss_pred CCchhhhhc----ccccccccccCCCeEEEECCCCCcccccCCCCCCCCC--CccccCCCCHhhhh----cCCeEEeccc
Q 042131 15 PSPTIHCRR----GRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSA--RPEVHNFELPVAVV----ACGVLTVEIE 84 (201)
Q Consensus 15 ~~~~i~~~~----g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~d~~~l~----~~d~i~~~~~ 84 (201)
+.++|++++ |++++++|+++|++|+++|..+.+..++ ++ ..+..++.|.+++. .+|+++++++
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d~~~~p~~~~-------ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e 95 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLDADNSPAKQI-------SAHDGHVTGSFKEREAVRQLAKTCDVVTAEIE 95 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESTTCTTGGG-------CCSSCCEESCTTCHHHHHHHHTTCSEEEESSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcHHHh-------ccccceeecCCCCHHHHHHHHHhCCEEEECCC
Confidence 356788774 4799999999999999998656777788 66 66788899988776 8899999999
Q ss_pred cCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccC--CHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 85 HVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVN--DLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 85 ~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~--~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
+++..+++.+++ |+++++++++++++.||..++++|+++|||+|++..++ +.+++.++++++|||+||||..|+|+|
T Consensus 96 ~~~~~~l~~l~~-g~~v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g 174 (403)
T 3k5i_A 96 HVDTYALEEVAS-EVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAYDG 174 (403)
T ss_dssp CSCHHHHHHHTT-TSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHCSSEEEEESSSCCTT
T ss_pred CCCHHHHHHHHc-CCccCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHhCCCEEEEeCCCCcCC
Confidence 999999999998 88899999999999999999999999999999999999 999999999999999999999887899
Q ss_pred CCeEEcCCHHHHHHHHHHhcCCCCceEEeecCC-CceeeC
Q 042131 163 RGNAVAKSEEELSSAITALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
+||+++++.+|+.++++.+... .+++|+||+ |.|++|
T Consensus 175 ~Gv~~v~~~~el~~a~~~~~~~--~~lvEe~i~~~~E~sv 212 (403)
T 3k5i_A 175 RGNFRVNSQDDIPEALEALKDR--PLYAEKWAYFKMELAV 212 (403)
T ss_dssp TTEEEECSTTSHHHHHHHTTTS--CEEEEECCCEEEEEEE
T ss_pred CCEEEECCHHHHHHHHHhcCCC--cEEEecCCCCCeEEEE
Confidence 9999999999999999987544 499999999 689885
No 2
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.97 E-value=3.5e-30 Score=215.25 Aligned_cols=178 Identities=20% Similarity=0.321 Sum_probs=160.6
Q ss_pred CCCchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccc
Q 042131 14 LPSPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIE 84 (201)
Q Consensus 14 ~~~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~ 84 (201)
.+.++|++++ |++++++|+++|++|+++|+ ++.+..++ ++..+..++.|.+.+. .+|+++++++
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~-------ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E 82 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYV-------AHEFIQAKYDDEKALNQLGQKCDVITYEFE 82 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGG-------SSEEEECCTTCHHHHHHHHHHCSEEEESST
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhh-------CCEEEECCCCCHHHHHHHHHhCCcceeccc
Confidence 4567888874 47999999999999999999 88888888 8888889999988776 7899999999
Q ss_pred cCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 85 HVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 85 ~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
++....+..+++.+ .+++++++++++.||..++++|+++|||+|++..+++.+++.+++++++||+|+||..|+|+|+|
T Consensus 83 ~~~~~~l~~l~~~~-~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~G 161 (377)
T 3orq_A 83 NISAQQLKLLCEKY-NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKG 161 (377)
T ss_dssp TSCHHHHHHHHHHS-CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTCSSEEEEESSSCCTTTT
T ss_pred ccCHHHHHHHhhhc-CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCCCEEEEeCCCCCCCCC
Confidence 99988888888774 46799999999999999999999999999999999999999999999999999999998778999
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceeeC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~sv 201 (201)
++++++.+|+.++++.+.... +++|+||+| .|++|
T Consensus 162 v~~v~~~~el~~a~~~~~~~~--~ivEe~i~g~~E~sv 197 (377)
T 3orq_A 162 QVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVSL 197 (377)
T ss_dssp EEEECSTTSHHHHHHHHTTSC--EEEEECCCEEEEEEE
T ss_pred eEEECCHHHHHHHHHhcCCCc--EEEEccCCCCEEEEE
Confidence 999999999999999887644 999999999 78885
No 3
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.96 E-value=7.2e-30 Score=216.01 Aligned_cols=178 Identities=23% Similarity=0.349 Sum_probs=159.0
Q ss_pred CCCCchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEecc
Q 042131 13 PLPSPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEI 83 (201)
Q Consensus 13 ~~~~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~ 83 (201)
..++.+|++++ |++++++|+++|++|+++|. ++.+..++ ++..+..++.|.+.+. .+|++++++
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~-------ad~~~~~~~~d~~~l~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAV-------ADRHLRAAYDDEAALAELAGLCEAVSTEF 104 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHH-------SSEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhh-------CCEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence 34677888875 47999999999999999998 88888889 8888889999988877 889999999
Q ss_pred ccCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHH----hCCCEEEeecCCC
Q 042131 84 EHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQ----FGYPLMVKSKSLA 159 (201)
Q Consensus 84 ~~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~----~~~P~VvKp~~g~ 159 (201)
++++..+++.+++. ..+++++++++++.||..++++|+++|||+|++..+++.+++.+++++ + ||+||||..+|
T Consensus 105 e~~~~~~~~~l~~~-~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g 182 (419)
T 4e4t_A 105 ENVPAASLDFLART-TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV-LPGILKTARLG 182 (419)
T ss_dssp TTCCHHHHHHHHTT-SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT-CSEEEEESSSC
T ss_pred CcCCHHHHHHHHcc-CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc-CCEEEEecCCC
Confidence 99998889999887 468999999999999999999999999999999999999999888888 9 99999999445
Q ss_pred CCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCC-CceeeC
Q 042131 160 YDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 160 ~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
++|+|+++++|.+|+.++++.+.... +++|+||+ +.|+||
T Consensus 183 ~~G~Gv~~v~~~~el~~a~~~~~~~~--~lvEe~i~~~~Eisv 223 (419)
T 4e4t_A 183 YDGKGQVRVSTAREARDAHAALGGVP--CVLEKRLPLKYEVSA 223 (419)
T ss_dssp CTTTTEEEECSHHHHHHHHHHTTTCC--EEEEECCCEEEEEEE
T ss_pred CCCCceEEECCHHHHHHHHHhcCCCc--EEEeecCCCCeEEEE
Confidence 79999999999999999999875444 99999999 578875
No 4
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.96 E-value=1.3e-29 Score=212.54 Aligned_cols=179 Identities=23% Similarity=0.379 Sum_probs=160.6
Q ss_pred CCCCchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEecc
Q 042131 13 PLPSPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEI 83 (201)
Q Consensus 13 ~~~~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~ 83 (201)
..++++|++++ |++++++|+++|++|+++|. .+.+..++ ++..+..++.|.+.+. .+|++++++
T Consensus 11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~-------ad~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQV-------ADIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTT-------CSEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHh-------CCceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 35677888874 47999999999999999998 78888888 7888888899877665 789999999
Q ss_pred ccCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 84 EHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 84 ~~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
+.++...++.+++.|. +++++++++++.||..++++|+++|||+|++..+++.+++.+++++++||+||||..|+++|+
T Consensus 84 e~~~~~~~~~l~~~g~-~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~ 162 (389)
T 3q2o_A 84 ENIDYRCLQWLEKHAY-LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGK 162 (389)
T ss_dssp CCCCHHHHHHHHHHSC-CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEEESSCCSSSC
T ss_pred ccccHHHHHHHHhhCc-cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 9999999999998887 789999999999999999999999999999999999999999999999999999999875689
Q ss_pred CeEEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceeeC
Q 042131 164 GNAVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~sv 201 (201)
|++++++.+|+.++++.+...+ +++|+||+| .|++|
T Consensus 163 Gv~~v~~~~el~~~~~~~~~~~--~lvEe~i~g~~E~~v 199 (389)
T 3q2o_A 163 GQVVLRSEADVDEARKLANAAE--CILEKWVPFEKEVSV 199 (389)
T ss_dssp CEEEESSGGGHHHHHHHHHHSC--EEEEECCCCSEEEEE
T ss_pred CeEEECCHHHHHHHHHhcCCCC--EEEEecccCceEEEE
Confidence 9999999999999998876444 999999998 89875
No 5
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.95 E-value=2.3e-27 Score=198.56 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=150.9
Q ss_pred Cchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccc
Q 042131 16 SPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIE 84 (201)
Q Consensus 16 ~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~ 84 (201)
.++|++++ |++++++++++|++|++++. ++.+.... ++..+..++.|.+.+. .+|++....+
T Consensus 11 ~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~-------~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e 83 (391)
T 1kjq_A 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHV-------AHRSHVINMLDGDALRRVVELEKPHYIVPEIE 83 (391)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGG-------SSEEEECCTTCHHHHHHHHHHHCCSEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhh-------ccceEECCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 45677663 57899999999999999998 77777777 7777777888877665 7888888788
Q ss_pred cCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHH-hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 85 HVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHF-SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 85 ~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
......++.+++.|+++++++++++++.||..++++| +++|||+|++..+++.+++.+++++++||+|+||..|+ +|+
T Consensus 84 ~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~ 162 (391)
T 1kjq_A 84 AIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS-SGK 162 (391)
T ss_dssp CSCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSSEEEEESCC----C
T ss_pred cCCHHHHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcCCCEEEEeCCCC-CCC
Confidence 7777777888889987789999999999999999999 89999999999999999999999999999999999865 999
Q ss_pred CeEEcCCHHHHHHHHHHhcC----CCCceEEeecCC-CceeeC
Q 042131 164 GNAVAKSEEELSSAITALGG----FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~----~~~~~lvEe~i~-G~e~sv 201 (201)
||+++++.+|+.++++.+.. ....+++||||+ |.|++|
T Consensus 163 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv 205 (391)
T 1kjq_A 163 GQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITL 205 (391)
T ss_dssp CCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEE
T ss_pred CeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEE
Confidence 99999999999999887532 134599999999 899985
No 6
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.95 E-value=1.8e-27 Score=197.97 Aligned_cols=167 Identities=29% Similarity=0.423 Sum_probs=142.2
Q ss_pred ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccccCCHHHHHHHHHCC
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIEHVDVAIMEKLEQQG 98 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~~i~~~~~~~l~~~g 98 (201)
|++++++++++|++++++++ .+.+...+ ++. +..++.|.+++. .+|++....+......++.+++.|
T Consensus 11 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~-------a~~-~~~~~~d~~~l~~~~~~~d~v~~~~e~~~~~~~~~l~~~g 82 (369)
T 3aw8_A 11 GRMLALAGYPLGLSFRFLDPSPEACAGQV-------GEL-VVGEFLDEGALLRFAEGLALVTYEFENVPVEAARRLEGRL 82 (369)
T ss_dssp HHHHHHHHTTBTCCEEEEESCTTCGGGGT-------SEE-EECCTTCHHHHHHHHTTCSEEEECCTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCChHHHh-------hce-EecCCCCHHHHHHHHhCCCEEEECCCCcCHHHHHHHHHcC
Confidence 68999999999999999998 66766667 666 667888887776 678888777777777778888888
Q ss_pred CcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHH
Q 042131 99 VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI 178 (201)
Q Consensus 99 ~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~ 178 (201)
.++++.++++++.||..++++|+++|||+|++..+++.+++.+++++++||+|+||..|+|+|+||++++|.+|+.+++
T Consensus 83 -~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~ 161 (369)
T 3aw8_A 83 -PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEAL 161 (369)
T ss_dssp -CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHH
T ss_pred -CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHH
Confidence 6899999999999999999999999999999999999999999889999999999999766899999999999999999
Q ss_pred HHhcCCCCceEEeecCC-CceeeC
Q 042131 179 TALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 179 ~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
+.+. ...+++||||+ |.||+|
T Consensus 162 ~~~~--~~~~lvEe~i~~g~e~sv 183 (369)
T 3aw8_A 162 KALG--GRGLILEGFVPFDREVSL 183 (369)
T ss_dssp TTTC--SSSEEEEECCCCSEEEEE
T ss_pred HhcC--CCcEEEEEcCCCCEEEEE
Confidence 8775 34599999999 999985
No 7
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.95 E-value=2.9e-27 Score=200.64 Aligned_cols=178 Identities=17% Similarity=0.229 Sum_probs=145.8
Q ss_pred Cchhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccc
Q 042131 16 SPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIE 84 (201)
Q Consensus 16 ~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~ 84 (201)
..+|++++ |++++++++++|+++++++. ++.+.... ++..+..++.|.+.+. .+|++....+
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~-------ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e 91 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQV-------AHRSYVGNMMDKDFLWSVVEREKPDAIIPEIE 91 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHH-------SSEEEESCTTCHHHHHHHHHHHCCSEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhh-------cceEEECCCCCHHHHHHHHHHcCCCEEEECcc
Confidence 34677663 57899999999999999998 77776677 6777777888877665 7888887778
Q ss_pred cCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHH-hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 85 HVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHF-SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 85 ~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
......++.+++.|+++++++++++++.||..++++| +++|||+|++..+++.+++.+++++++||+||||..|+ +|+
T Consensus 92 ~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~ 170 (433)
T 2dwc_A 92 AINLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIGYPCHTKAIMSS-SGK 170 (433)
T ss_dssp CSCHHHHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHCSSEEEEECCC-----
T ss_pred cCCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcCCCEEEEECCCc-CCC
Confidence 7777777888889987789999999999999999999 89999999999999999999999999999999999865 999
Q ss_pred CeEEcCCHHHHHHHHHHhcC----CCCceEEeecCC-CceeeC
Q 042131 164 GNAVAKSEEELSSAITALGG----FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~----~~~~~lvEe~i~-G~e~sv 201 (201)
||+++++.+|+.++++.+.. ....+++||||+ |.|++|
T Consensus 171 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv 213 (433)
T 2dwc_A 171 GSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTE 213 (433)
T ss_dssp --EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEE
T ss_pred CeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEE
Confidence 99999999999999876542 234699999999 899985
No 8
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.94 E-value=5e-27 Score=196.04 Aligned_cols=162 Identities=31% Similarity=0.524 Sum_probs=137.2
Q ss_pred ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEEeccccCCHHHHHHHHHCC
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLTVEIEHVDVAIMEKLEQQG 98 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~~~~~~i~~~~~~~l~~~g 98 (201)
|++++++++++|++++++++ .+.+...+ ++..+..++.|.+.+. .+|++....+.+....++.+++.|
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~~~~~~~l~~~g 85 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQV-------ADEQIVAGFFDSERIEDLVKGSDVTTYDLEHIDVQTLKKLYNEG 85 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGG-------SSEEEECCTTCHHHHHHHHHTCSEEEESCSCSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhh-------CceEEECCCCCHHHHHHHHhcCCEEEecccCCCHHHHHHHHHCC
Confidence 68999999999999999998 67766667 6766777888877775 788888888887777788899999
Q ss_pred CcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHH
Q 042131 99 VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAI 178 (201)
Q Consensus 99 ~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~ 178 (201)
+++++++++++++.||..++++|+++|||+|++..+++.++ ++++++||+|+||..|+|+|+||+++++.+|+..++
T Consensus 86 i~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~ 162 (380)
T 3ax6_A 86 YKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAI 162 (380)
T ss_dssp CEESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCC
T ss_pred CeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHh
Confidence 88889999999999999999999999999999999999887 567899999999999766899999999999987765
Q ss_pred HHhcCCCCceEEeecCC-CceeeC
Q 042131 179 TALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 179 ~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
+ ..+++||||+ |.||+|
T Consensus 163 ~------~~~lvEe~i~~g~e~sv 180 (380)
T 3ax6_A 163 K------GETYLEEFVEIEKELAV 180 (380)
T ss_dssp C------SSEEEEECCCEEEEEEE
T ss_pred c------CCEEEEeccCCCeeEEE
Confidence 4 4599999999 899985
No 9
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.94 E-value=1.2e-26 Score=194.97 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=141.5
Q ss_pred Cchhhhhcc----cccccccccCCCeEEEECC-C-CCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecc
Q 042131 16 SPTIHCRRG----RRFPVDRPLKDSRLWELDS-G-AIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEI 83 (201)
Q Consensus 16 ~~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~-~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~ 83 (201)
..+|++.++ ..++++|+++|+++++++. . +.+..++ ++..+..++.|.+.+. .+|.+....
T Consensus 7 ~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~-------ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~ 79 (403)
T 4dim_A 7 NKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNL-------ADEISYMDISNPDEVEQKVKDLNLDGAATCC 79 (403)
T ss_dssp CCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHH-------CSEEEECCTTCHHHHHHHTTTSCCSEEECCS
T ss_pred CCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhh-------CCeEEEecCCCHHHHHHHHHHcCCCEEEeCC
Confidence 456776643 4788999999999999986 4 4466677 7887788888888776 567776533
Q ss_pred ccCCH-HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 84 EHVDV-AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 84 ~~i~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
..... .+.+.+++.|+ +++++++++.+.||..++++|+++|+|+|++..+++.+++.+++++++||+|+||..|+ ||
T Consensus 80 ~~~~~~~~a~~~~~~gl-~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~-gg 157 (403)
T 4dim_A 80 LDTGIVSLARICDKENL-VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLKLPVIVKATDLQ-GS 157 (403)
T ss_dssp CSTTHHHHHHHHHHHTC-SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSCSSEEEECSCC----
T ss_pred cchhHHHHHHHHHHcCc-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCCCCEEEEECCCC-CC
Confidence 33333 34456677787 58999999999999999999999999999999999999999999999999999999975 99
Q ss_pred CCeEEcCCHHHHHHHHHHhcC--CCCceEEeecCCCceeeC
Q 042131 163 RGNAVAKSEEELSSAITALGG--FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~--~~~~~lvEe~i~G~e~sv 201 (201)
+||+++++.+|+.+++..+.. ..+.+++||||+|.||+|
T Consensus 158 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv 198 (403)
T 4dim_A 158 KGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGA 198 (403)
T ss_dssp --CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEE
T ss_pred CCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEE
Confidence 999999999999999987642 235599999999999985
No 10
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.93 E-value=9.8e-27 Score=192.67 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=132.3
Q ss_pred hhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccccCCHHHHH
Q 042131 18 TIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEHVDVAIME 92 (201)
Q Consensus 18 ~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~i~~~~~~ 92 (201)
+|++++ |||++.+|+++|++| ++. .+++. .+ +. + .+|++++++++++.+.++
T Consensus 3 ~igilGgGqlg~m~~~aa~~lG~~v--~~~~~~a~~-~~------------~~-------l-~~d~it~e~e~v~~~~l~ 59 (355)
T 3eth_A 3 QVCVLGNGQLGRMLRQAGEPLGIAV--WPVGLDAEP-AA------------VP-------F-QQSVITAEIERWPETALT 59 (355)
T ss_dssp EEEEESCSHHHHHHHHHHGGGTCEE--EEECTTCCG-GG------------CC-------C-TTSEEEESCSCCCCCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEE--ECCCCCCCc-eE------------Ec-------c-cCCEEEECcCCcCHHHHH
Confidence 466653 589999999999999 454 44432 22 11 2 889999999999988999
Q ss_pred HHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCC--
Q 042131 93 KLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKS-- 170 (201)
Q Consensus 93 ~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~-- 170 (201)
.+++.| .++|++++++++.||..+|++|+++|||+|++..+++.+++.++++++|||+||||..+|++|+|++++++
T Consensus 60 ~l~~~~-~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~ 138 (355)
T 3eth_A 60 RQLARH-PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANE 138 (355)
T ss_dssp HHHHTC-TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTC
T ss_pred HHHhcC-CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCC
Confidence 999987 78999999999999999999999999999999999999999999999999999999997779999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEeecCC-CceeeC
Q 042131 171 EEELSSAITALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 171 ~~el~~~~~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
.+|+.+++ + + .+++|+||+ |.|+||
T Consensus 139 ~~el~~a~--~-~---~vivEe~I~~~~Eisv 164 (355)
T 3eth_A 139 TEQLPAEC--Y-G---ECIVEQGINFSGEVSL 164 (355)
T ss_dssp GGGSCGGG--T-T---TEEEEECCCCSEEEEE
T ss_pred HHHHHHHh--h-C---CEEEEEccCCCcEEEE
Confidence 99988754 2 2 499999999 688885
No 11
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.92 E-value=2.9e-25 Score=189.04 Aligned_cols=177 Identities=17% Similarity=0.224 Sum_probs=142.5
Q ss_pred chhhhhc----ccccccccccCCCeEEEECC---CCCcccccCCCCCCCCCCccc-------cCCCCHhhhh------cC
Q 042131 17 PTIHCRR----GRRFPVDRPLKDSRLWELDS---GAIAARGISPPPLLDSARPEV-------HNFELPVAVV------AC 76 (201)
Q Consensus 17 ~~i~~~~----g~~l~~aa~~~G~~v~~~~~---~~~~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~ 76 (201)
.+|++.+ +++++++|+++|++++++++ .+.+..++ +|..+. .++.|.+.+. .+
T Consensus 7 ~kiLI~g~g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~-------ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~ 79 (446)
T 3ouz_A 7 KSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKY-------ADASICIGKARSSESYLNIPAIIAAAEIAEA 79 (446)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHH-------SSEEEEEECCTTTTGGGCHHHHHHHHHHHTC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEcCcccccchHhh-------CCEEEEcCCCCccccccCHHHHHHHHHHhCc
Confidence 4666654 36889999999999998865 35555666 666553 2667766665 67
Q ss_pred CeEEecccc--CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCE
Q 042131 77 GVLTVEIEH--VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 77 d~i~~~~~~--i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~ 151 (201)
|++....+. -...+++.+++.|++ +++++++++.+.||..++++|+++|+|+|++. .+++.+++.+++++++||+
T Consensus 80 d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~Pv 159 (446)
T 3ouz_A 80 DAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPV 159 (446)
T ss_dssp SEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSE
T ss_pred CEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCE
Confidence 877643322 235677888999985 47999999999999999999999999999997 7899999999999999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
||||..|+ ||+||+++++.+|+.++++.+.. ....+++||||+| .|++|
T Consensus 160 vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v 215 (446)
T 3ouz_A 160 ILKAAAGG-GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEV 215 (446)
T ss_dssp EEEETTCC-TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEE
T ss_pred EEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEE
Confidence 99999976 99999999999999999876431 1345999999999 67764
No 12
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.1e-24 Score=183.96 Aligned_cols=174 Identities=17% Similarity=0.139 Sum_probs=138.1
Q ss_pred hhhhhc--cccccccc---ccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccC
Q 042131 18 TIHCRR--GRRFPVDR---PLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHV 86 (201)
Q Consensus 18 ~i~~~~--g~~l~~aa---~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i 86 (201)
+|++++ ||+++.++ +++|++++++++.+.....+ ++ .+. ++.|.+.+. .+|++....++.
T Consensus 2 kililG~g~r~~a~a~~l~~~~g~~~v~~~~~~~~~~~~-------~~-~~~-~~~d~~~l~~~~~~~~~d~v~~~~E~~ 72 (417)
T 2ip4_A 2 KVLVVGSGGREHALLWKAAQSPRVKRLYAAPGNAGMEAL-------AE-LVP-WNGDVEALADWALAEGIDLTLVGPEAP 72 (417)
T ss_dssp EEEEEESSHHHHHHHHHHHTCSSCCEEEEEECCTTGGGT-------SE-ECC-CCSCHHHHHHHHHHHTCCEEEECSSHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEECCCcchhhh-------cc-cCC-CccCHHHHHHHHHHcCCCEEEECCchH
Confidence 355553 35666554 78999988887633222333 33 344 788887776 678887666553
Q ss_pred C-HHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 87 D-VAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 87 ~-~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
. ..+++.+++.|+++ +++.++++++.||..++++|+++|||+|++..+++.+++.+++++++||+|+||..|+ +|+|
T Consensus 73 ~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~-gg~G 151 (417)
T 2ip4_A 73 LVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGVPVVVKDSGLA-AGKG 151 (417)
T ss_dssp HHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHCSSEEEECTTSC-SSTT
T ss_pred HHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcCCCEEEEECCCC-CCCC
Confidence 2 24567788888854 6999999999999999999999999999999999999999999999999999999976 9999
Q ss_pred eEEcCCHHHHHHHHHHhcC--CCCceEEeecCCCceeeC
Q 042131 165 NAVAKSEEELSSAITALGG--FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~--~~~~~lvEe~i~G~e~sv 201 (201)
|+++++.+|+.++++.+.. ....+++||||+|.||+|
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~E~sv 190 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEGEEATV 190 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCSCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECccCcEEEE
Confidence 9999999999999988742 225699999999999986
No 13
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.92 E-value=5.2e-25 Score=186.35 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=124.8
Q ss_pred chhhhhcc----cccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCcc-ccCCCCHhhhh----------cCCeEE
Q 042131 17 PTIHCRRG----RRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPE-VHNFELPVAVV----------ACGVLT 80 (201)
Q Consensus 17 ~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~-~~~~~d~~~l~----------~~d~i~ 80 (201)
++|++++| ..++++|+++|++|+++++ .+........ ++..+ ...+.|.+.+. ..|.+.
T Consensus 6 k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~-----~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~ 80 (425)
T 3vot_A 6 KNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPA-----VERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVM 80 (425)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTT-----EEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEE
T ss_pred cEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhh-----ccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEE
Confidence 45666543 2556899999999999887 5544333311 34443 34456654433 456554
Q ss_pred eccccCCHHHH-HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCC
Q 042131 81 VEIEHVDVAIM-EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLA 159 (201)
Q Consensus 81 ~~~~~i~~~~~-~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~ 159 (201)
...+.. ...+ ...+.+|++ ++++++++++.||..+|++|+++|||+|++..+++.+++.. .+++||+||||..|+
T Consensus 81 ~~~e~~-~~~~a~l~e~lglp-g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~g~P~vvKp~~g~ 156 (425)
T 3vot_A 81 TLFEPA-LPFTAKAAEALNLP-GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKLSYPLVVKPVNGF 156 (425)
T ss_dssp CCCGGG-HHHHHHHHHHTTCS-SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCCCSSEEEEESCC-
T ss_pred ECCchh-HHHHHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhcCCcEEEEECCCC
Confidence 333322 2233 334566764 89999999999999999999999999999999999988753 578999999999975
Q ss_pred CCCCCeEEcCCHHHHHHHHHHhc-----------CCCCceEEeecCCCceeeC
Q 042131 160 YDGRGNAVAKSEEELSSAITALG-----------GFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 160 ~~g~gv~~~~~~~el~~~~~~~~-----------~~~~~~lvEe~i~G~e~sv 201 (201)
+|+||++++|.+|+.++++.+. .....+++|+||+|+||||
T Consensus 157 -gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv 208 (425)
T 3vot_A 157 -SSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAI 208 (425)
T ss_dssp -----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEE
T ss_pred -CCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEE
Confidence 9999999999999999987642 2345699999999999986
No 14
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.92 E-value=5.9e-25 Score=187.23 Aligned_cols=176 Identities=20% Similarity=0.272 Sum_probs=139.4
Q ss_pred hhhhhc----ccccccccccCCCeEEEECC-C--CCcccccCCCCCCCCCCcccc-------CCCCHhhhh------cCC
Q 042131 18 TIHCRR----GRRFPVDRPLKDSRLWELDS-G--AIAARGISPPPLLDSARPEVH-------NFELPVAVV------ACG 77 (201)
Q Consensus 18 ~i~~~~----g~~l~~aa~~~G~~v~~~~~-~--~~~~~~~~~~~~~~a~~~~~~-------~~~d~~~l~------~~d 77 (201)
+|++++ +++++++++++|++++++++ . ..+..++ ++..+.. ++.|.+.+. .+|
T Consensus 4 ~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~-------ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d 76 (449)
T 2w70_A 4 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL-------ADETVCIGPAPSVKSYLNIPAIISAAEITGAV 76 (449)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHH-------SSEEEEEECSSGGGTTTCHHHHHHHHHHHTCC
T ss_pred eEEEeCCcHHHHHHHHHHHHcCCeEEEEeccccccCchhhh-------CCEEEEcCCCCccccccCHHHHHHHHHHcCCC
Confidence 455543 46888999999999998865 3 3454556 5655443 677777665 678
Q ss_pred eEEeccccCC--HHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHH-HHHHHHhCCCE
Q 042131 78 VLTVEIEHVD--VAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESA-RRAGKQFGYPL 151 (201)
Q Consensus 78 ~i~~~~~~i~--~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~-~~~~~~~~~P~ 151 (201)
.+....+..+ ..+++.+++.|++ +++++++++++.||..++++|+++|||+|++. .+++.+++ .+++++++||+
T Consensus 77 ~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~Pv 156 (449)
T 2w70_A 77 AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPV 156 (449)
T ss_dssp EEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSE
T ss_pred EEEECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcE
Confidence 8775543322 3456788889985 68999999999999999999999999999987 78899999 88889999999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
||||..|+ +|+||+++++.+|+.++++.+.. ....+++||||+| .||+|
T Consensus 157 vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v 212 (449)
T 2w70_A 157 IIKASGGG-GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEI 212 (449)
T ss_dssp EEEETTCC-TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEE
T ss_pred EEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEE
Confidence 99999976 99999999999999998876421 1345999999998 68764
No 15
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.92 E-value=6.2e-25 Score=187.16 Aligned_cols=176 Identities=15% Similarity=0.217 Sum_probs=138.5
Q ss_pred hhhhhc----ccccccccccCCCeEEEECC-CC--CcccccCCCCCCCCCCcccc------CCCCHhhhh------cCCe
Q 042131 18 TIHCRR----GRRFPVDRPLKDSRLWELDS-GA--IAARGISPPPLLDSARPEVH------NFELPVAVV------ACGV 78 (201)
Q Consensus 18 ~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~--~~~~~~~~~~~~~a~~~~~~------~~~d~~~l~------~~d~ 78 (201)
+|++++ +.+++++++++|++++++++ .+ .+..++ ++..+.. ++.|.+++. .+|.
T Consensus 4 ~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~-------ad~~~~~~p~~~~~~~d~~~l~~~~~~~~~d~ 76 (451)
T 1ulz_A 4 KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKL-------ADEAYMIGTDPLDTYLNKQRIINLALEVGADA 76 (451)
T ss_dssp SEEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHH-------SSEEEECCSSTTHHHHCHHHHHHHHHHTTCCE
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEechhhcccchhhh-------CcEEEEcCCCcccccCCHHHHHHHHHHcCCCE
Confidence 455553 45788999999999999886 43 444556 5655433 455555555 6777
Q ss_pred EEeccccC--CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEE
Q 042131 79 LTVEIEHV--DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMV 153 (201)
Q Consensus 79 i~~~~~~i--~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~Vv 153 (201)
+....+.. ...+++.+++.|++ +++++++++++.||..++++|+++|||+|++. .+++.+++.+++++++||+||
T Consensus 77 v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~Pvvv 156 (451)
T 1ulz_A 77 IHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLL 156 (451)
T ss_dssp EECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEE
T ss_pred EEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEE
Confidence 76554332 23456788889985 58999999999999999999999999999987 789999999999999999999
Q ss_pred eecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 154 KSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 154 Kp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
||..|+ +|+||+++++.+|+.++++.+.. ....+++||||+| .||+|
T Consensus 157 Kp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v 210 (451)
T 1ulz_A 157 KATAGG-GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEY 210 (451)
T ss_dssp EECSSS-SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEE
T ss_pred EECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEE
Confidence 999976 99999999999999998876421 1345999999999 57764
No 16
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.92 E-value=3.4e-24 Score=182.65 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=136.8
Q ss_pred ccccccccccCCCeEEEECC-CC--CcccccCCCCCCCCCCccc-------cCCCCHhhhh------cCCeEEeccccC-
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GA--IAARGISPPPLLDSARPEV-------HNFELPVAVV------ACGVLTVEIEHV- 86 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~--~~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~d~i~~~~~~i- 86 (201)
+++++++++++|++++++++ .+ .+..++ ++..+. .++.|.+.+. .+|++....+..
T Consensus 13 ~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~-------ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~ 85 (451)
T 2vpq_A 13 AVRIIRACRDLGIQTVAIYSEGDKDALHTQI-------ADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLA 85 (451)
T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCHHHHH-------SSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTT
T ss_pred HHHHHHHHHHcCCEEEEEecccccccchhhh-------CCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccc
Confidence 45888999999999999876 33 444455 565443 4677776665 678877554433
Q ss_pred -CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 87 -DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 87 -~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
...+++.+++.|++ ++++.++++++.||..++++|+++|||+|++. .+++.+++.+++++++||+||||..|+ +|
T Consensus 86 e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg 164 (451)
T 2vpq_A 86 ENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGG-GG 164 (451)
T ss_dssp TCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETTCC-TT
T ss_pred cCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEEECCCC-CC
Confidence 24566788888985 68899999999999999999999999999976 789999999999999999999999976 99
Q ss_pred CCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 163 RGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
+||+++++.+|+.++++.+.. ....+++||||+| .||+|
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v 210 (451)
T 2vpq_A 165 KGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEI 210 (451)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEE
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEE
Confidence 999999999999998876421 1345999999999 57764
No 17
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.92 E-value=1.3e-24 Score=183.89 Aligned_cols=175 Identities=17% Similarity=0.221 Sum_probs=137.4
Q ss_pred hhhhhc--cccccccc---ccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccC
Q 042131 18 TIHCRR--GRRFPVDR---PLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHV 86 (201)
Q Consensus 18 ~i~~~~--g~~l~~aa---~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i 86 (201)
+|++++ |++++.++ +++|++++++++.+.....+ ++ .+..++.|.+.+. .+|++....+..
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~~~~~~~~-------~~-~~~~~~~d~~~l~~~~~~~~~d~v~~~~E~~ 73 (424)
T 2yw2_A 2 KVLVVGNGGREHAIAWKVAQSPLVKELYVAKGNAGIWEI-------AK-RVDISPTDVEKLAEFAKNEGVDFTIVGPEAP 73 (424)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTCSEEEEEECCTTGGGT-------SE-EECSCTTCHHHHHHHHHHHTCSEEEECSHHH
T ss_pred EEEEECCCHHHHHHHHHHhhCCCCCEEEEECCCcchhhh-------cc-cccCCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 355553 35555544 78999988887633333334 33 3456777877776 678887665543
Q ss_pred C-HHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 87 D-VAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 87 ~-~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
. ..+++.+++.|+++ ++++++++++.||..++++|+++|||+|++..+++.+++.+++++++||+|+||..|+ +|+|
T Consensus 74 ~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~PvvvKp~~g~-gg~G 152 (424)
T 2yw2_A 74 LVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVGAPIVVKADGLA-AGKG 152 (424)
T ss_dssp HHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCC-TTCS
T ss_pred HHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCCcEEEEeCCCC-CCCC
Confidence 1 23557788889854 6999999999999999999999999999999999999999999999999999999975 9999
Q ss_pred eEEcCCHHHHHHHHHHhcCC------CCceEEeecCCCceeeC
Q 042131 165 NAVAKSEEELSSAITALGGF------DRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~------~~~~lvEe~i~G~e~sv 201 (201)
|+++++.+|+.++++.+... ...+++||||+|.||+|
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g~E~sv 195 (424)
T 2yw2_A 153 AVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEGEEASY 195 (424)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCcEEEE
Confidence 99999999999999876431 24699999999999986
No 18
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.91 E-value=1.8e-24 Score=184.50 Aligned_cols=177 Identities=19% Similarity=0.161 Sum_probs=135.6
Q ss_pred Cchhhhhcc--cccccc---cccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccc
Q 042131 16 SPTIHCRRG--RRFPVD---RPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIE 84 (201)
Q Consensus 16 ~~~i~~~~g--~~l~~a---a~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~ 84 (201)
+.+|+++++ ++++.+ ++++|++++++++.+.....+ ++ .+..++.|.+.+. .+|++....+
T Consensus 21 ~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~~~~~~~~-------~~-~~~~~~~d~~~l~~~~~~~~~d~vi~~~E 92 (451)
T 2yrx_A 21 HMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIADV-------AE-LVHIDELDIEALVQFAKQQAIDLTIVGPE 92 (451)
T ss_dssp SEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEECCTTGGGT-------SE-ECCCCTTCHHHHHHHHHHTTCSEEEECSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhhhh-------Cc-eeccCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 357777643 555544 388999988777633333334 33 3445677777776 6788876655
Q ss_pred cCC-HHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCC
Q 042131 85 HVD-VAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDG 162 (201)
Q Consensus 85 ~i~-~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g 162 (201)
... ..+++.+++.|+++ +++.++++++.||..++++|+++|||+|++..+++.+++.+++++++||+||||..|+ +|
T Consensus 93 ~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~PvVvKp~~~~-gg 171 (451)
T 2yrx_A 93 APLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKGAPIVIKADGLA-AG 171 (451)
T ss_dssp HHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEECC-----
T ss_pred hHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCCcEEEEeCCCC-CC
Confidence 532 24567788889864 6999999999999999999999999999999999999999999999999999999976 99
Q ss_pred CCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCceeeC
Q 042131 163 RGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 163 ~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
+||+++++.+|+.++++.+.. ....++|||||+|.||+|
T Consensus 172 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G~E~sv 216 (451)
T 2yrx_A 172 KGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEGEEFSF 216 (451)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCSEEEEE
T ss_pred CcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcCcEEEE
Confidence 999999999999999877531 124699999999999986
No 19
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.91 E-value=1.1e-24 Score=184.22 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=136.8
Q ss_pred hhhhhc--cccccccc---ccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEeccccC
Q 042131 18 TIHCRR--GRRFPVDR---PLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEHV 86 (201)
Q Consensus 18 ~i~~~~--g~~l~~aa---~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~i 86 (201)
+|++++ ||+++.++ +++|++++++++.+....++ ++ .+..++.|.+.+. .+|.+....+..
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~~~~~~~~-------~~-~~~~~~~d~~~l~~~~~~~~~d~v~~~~E~~ 73 (422)
T 2xcl_A 2 NVLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDGMAAS-------AQ-LVNIEESDHAGLVSFAKQNQVGLTIVGPEVP 73 (422)
T ss_dssp EEEEEECSHHHHHHHHHHTTCTTCSEEEEEECCGGGTTT-------CE-ECCCCTTCHHHHHHHHHHTTEEEEEECSHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCChhhhhh-------cc-ccccCcCCHHHHHHHHHHcCCCEEEECCcHH
Confidence 345543 35565554 67899998887633222334 34 3456777877776 457676655543
Q ss_pred C-HHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 87 D-VAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 87 ~-~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
. ..+++.+++.|+++ +++.++++++.||..++++|+++|||+|++..+++.+++.+++++++||+|+||..|+ +|+|
T Consensus 74 ~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~-~g~G 152 (422)
T 2xcl_A 74 LIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLA-AGKG 152 (422)
T ss_dssp HHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCG-GGTC
T ss_pred HHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCCc
Confidence 1 24567788889865 6999999999999999999999999999999999999999999999999999999975 9999
Q ss_pred eEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCceeeC
Q 042131 165 NAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
|+++++.+|+..+++.+.. ....+++||||+|.||||
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g~E~sv 195 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSGEEFSL 195 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcCcEEEE
Confidence 9999999999999987642 124699999999999986
No 20
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.91 E-value=8.4e-25 Score=181.56 Aligned_cols=164 Identities=22% Similarity=0.393 Sum_probs=98.5
Q ss_pred ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh-cCCeEEeccccCCHHHHHHHHHCCCcc
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV-ACGVLTVEIEHVDVAIMEKLEQQGVDC 101 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~-~~d~i~~~~~~i~~~~~~~l~~~g~~~ 101 (201)
|++++++++++|+++++++. .+.+..++ ++..+..+ ....+. .+|++....++....+++.++. .+
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~-------~~~~~~~~--~l~~~~~~~d~v~~~~e~~~~~~~~~l~~---~~ 80 (365)
T 2z04_A 13 GWMTILEGRKLGFKFHVLEDKENAPACRV-------ADRCFRTG--QISEFVDSCDIITYEFEHIKDEVLEKCES---KL 80 (365)
T ss_dssp HHHHHHHHGGGTCEEEEECSSSSCHHHHH-------SSEEECGG--GHHHHHHHCSEEEESSSCCCHHHHHHHTT---TB
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhh-------ccceeeHH--HHHHHhhcCCEEEECCCCCcHHHHHHHhh---hc
Confidence 57899999999999999998 66665566 55544443 222222 7888887777777666666654 57
Q ss_pred cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHh
Q 042131 102 QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITAL 181 (201)
Q Consensus 102 ~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~ 181 (201)
+++.++++++.||..++++|+++|||+|++..++ .+++.+++++++||+|+||..|+|+|+||+++++.+|+.++++.+
T Consensus 81 g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~ 159 (365)
T 2z04_A 81 IPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNH 159 (365)
T ss_dssp SSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC---------------CEEEECC-------------------------
T ss_pred CCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHh
Confidence 8999999999999999999999999999999988 888888888999999999999766899999999999999998776
Q ss_pred cCCCCceEEeecCC-CceeeC
Q 042131 182 GGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 182 ~~~~~~~lvEe~i~-G~e~sv 201 (201)
.. ...+++||||+ |.|++|
T Consensus 160 ~~-~~~~lvEe~i~~g~e~sv 179 (365)
T 2z04_A 160 DK-EESFIIEEFVKFEAEISC 179 (365)
T ss_dssp ------CEEEECCCCSEEEEE
T ss_pred cc-CCCEEEEccCCCCEEEEE
Confidence 32 34599999999 899985
No 21
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=182.24 Aligned_cols=176 Identities=22% Similarity=0.248 Sum_probs=135.4
Q ss_pred chhhhhcc--ccccc---ccccCCCeEEEECC-CCCcccccCCCCCCCCCC-ccccCCCCHhhhh------cCCeEEecc
Q 042131 17 PTIHCRRG--RRFPV---DRPLKDSRLWELDS-GAIAARGISPPPLLDSAR-PEVHNFELPVAVV------ACGVLTVEI 83 (201)
Q Consensus 17 ~~i~~~~g--~~l~~---aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~-~~~~~~~d~~~l~------~~d~i~~~~ 83 (201)
.+|+++++ ++++. .++++|++++++++ ...+. .. ++. .+..++.|.+.+. .+|.+....
T Consensus 25 ~~IlIlG~g~r~~al~~~~a~~~g~~~v~~~~~~~~~~-~~-------~~~~~~~~~~~d~~~l~~~~~~~~~d~V~~~~ 96 (452)
T 2qk4_A 25 ARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTA-CS-------EKISNTAISISDHTALAQFCKEKKIEFVVVGP 96 (452)
T ss_dssp EEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGS-BS-------SSEEECCCCSSCHHHHHHHHHHHTCCEEEECS
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhh-hh-------ccccccccCCCCHHHHHHHHHHcCCCEEEECC
Confidence 46777643 33332 26888999887776 33332 33 332 3445777877776 678887666
Q ss_pred ccC-CHHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCCC
Q 042131 84 EHV-DVAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLAY 160 (201)
Q Consensus 84 ~~i-~~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~~ 160 (201)
+.. ...+++.+++.|+++ ++++++++++.||..++++|+++|||+|++..+++.+++.+++++++|| +||||..|+
T Consensus 97 E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvvKp~~~~- 175 (452)
T 2qk4_A 97 EAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLA- 175 (452)
T ss_dssp SHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCSSCEEEEEESBC--
T ss_pred cHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCCCCeEEEEeCCCC-
Confidence 653 224567788889854 6999999999999999999999999999999999999999999999999 999999975
Q ss_pred CCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCCceeeC
Q 042131 161 DGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 161 ~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
+|+||+++++.+|+.++++.+.. ....+++||||+|.||+|
T Consensus 176 gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G~E~sv 222 (452)
T 2qk4_A 176 AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSC 222 (452)
T ss_dssp --CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCSEEEEE
T ss_pred CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCeEEE
Confidence 99999999999999999987642 134699999999999986
No 22
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.90 E-value=9.6e-24 Score=180.35 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=136.9
Q ss_pred chhhhhcc----cccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccc--------cCCCCHhhhh------c
Q 042131 17 PTIHCRRG----RRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEV--------HNFELPVAVV------A 75 (201)
Q Consensus 17 ~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~--------~~~~d~~~l~------~ 75 (201)
.+|++.++ .+++++++++|++++++++ .+. +..++ ++..+. .+|.|.+.+. .
T Consensus 7 k~ILI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~-------ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~ 79 (461)
T 2dzd_A 7 RKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYK-------ADEAYLVGEGKKPIEAYLDIEGIIEIAKAHD 79 (461)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEEEECGGGTTCTHHHH-------SSSEEECSTTSCTTGGGTCHHHHHHHHHHTT
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCEEEEEECCcccccchhhh-------CCEEEEcCCCCCccccccCHHHHHHHHHHhC
Confidence 45666533 5778999999999999987 443 33344 454332 1345666665 5
Q ss_pred CCeEEeccccC--CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCC
Q 042131 76 CGVLTVEIEHV--DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYP 150 (201)
Q Consensus 76 ~d~i~~~~~~i--~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P 150 (201)
+|.+....+.. ...+++.+++.|++ +++++++++++.||..++++|+++|||+|++. .+++.+++.+++++++||
T Consensus 80 id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~P 159 (461)
T 2dzd_A 80 VDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYP 159 (461)
T ss_dssp CCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSC
T ss_pred CCEEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCc
Confidence 67776443221 23567788889985 68999999999999999999999999999987 789999999999999999
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
+||||..|+ +|+||+++++.+|+.++++.+.. ....+++||||+| .|++|
T Consensus 160 vvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v 216 (461)
T 2dzd_A 160 IIIKAALGG-GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEV 216 (461)
T ss_dssp EEEEESTTC-SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEE
T ss_pred EEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEE
Confidence 999999976 99999999999999998876421 1345999999999 57664
No 23
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.90 E-value=5.2e-24 Score=184.95 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=134.0
Q ss_pred Cchhhhhc-c---cccccccccC---------CCeEEEECC-----CCCcccccCCCCCCCCCCccc-------cCCCCH
Q 042131 16 SPTIHCRR-G---RRFPVDRPLK---------DSRLWELDS-----GAIAARGISPPPLLDSARPEV-------HNFELP 70 (201)
Q Consensus 16 ~~~i~~~~-g---~~l~~aa~~~---------G~~v~~~~~-----~~~~~~~~~~~~~~~a~~~~~-------~~~~d~ 70 (201)
..+|++.+ | .+++++++++ |++++.+.+ .+.+..++ +|+.+. .+|.|.
T Consensus 40 ~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~-------ADe~~~i~~~~~~~sy~d~ 112 (540)
T 3glk_A 40 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKM-------ADHYVPVPGGPNNNNYANV 112 (540)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHH-------SSEEEECCCSSGGGTTTCH
T ss_pred ccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHh-------CCEEEEeCCCCcccccccH
Confidence 44666653 3 3667888865 899988754 34555566 666543 368887
Q ss_pred hhhh------cCCeEEec--cccCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc--------
Q 042131 71 VAVV------ACGVLTVE--IEHVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME-------- 133 (201)
Q Consensus 71 ~~l~------~~d~i~~~--~~~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------- 133 (201)
+++. .+|++... +......+...+++.|++ ++|++++++.+.||..++++|+++|||+|++..
T Consensus 113 ~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~ 192 (540)
T 3glk_A 113 ELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWT 192 (540)
T ss_dssp HHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCC
T ss_pred HHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCccccccccccc
Confidence 7776 66776533 323345677888999995 579999999999999999999999999999877
Q ss_pred ---------------------cCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC--CCCceEE
Q 042131 134 ---------------------VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG--FDRSLYI 190 (201)
Q Consensus 134 ---------------------~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~--~~~~~lv 190 (201)
+++.+++.++++++|||+||||..|+ ||+|++++++.+|+.++++.+.. ..+.++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~gg-GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlV 271 (540)
T 3glk_A 193 EDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFL 271 (540)
T ss_dssp CTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC-----EEEECSTTTHHHHHHHHHHHSTTCCEEE
T ss_pred ccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhhccCCCEEE
Confidence 88999999999999999999999986 99999999999999999987642 2345999
Q ss_pred eecCCC-ceeeC
Q 042131 191 EKWAPF-VKVNV 201 (201)
Q Consensus 191 Ee~i~G-~e~sv 201 (201)
|+||+| .|++|
T Consensus 272 Ee~I~g~rei~V 283 (540)
T 3glk_A 272 MKLAQHARHLEV 283 (540)
T ss_dssp EECCSSEEEEEE
T ss_pred EEecCCCcEEEE
Confidence 999999 88875
No 24
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.90 E-value=8.9e-24 Score=172.43 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=119.9
Q ss_pred cccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc---CCHHHHHHHHHCCC
Q 042131 23 RGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH---VDVAIMEKLEQQGV 99 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~---i~~~~~~~l~~~g~ 99 (201)
+|+.+++++++.||+|+.++..+.....+ .. ...|++...... -...+...++..|+
T Consensus 33 s~~~v~~al~~~g~~v~~i~~~~~~~~~l-------------------~~-~~~D~v~~~~hg~~ge~~~~~~~le~~gi 92 (317)
T 4eg0_A 33 SGRLVLQGLRDAGIDAHPFDPAERPLSAL-------------------KD-EGFVRAFNALHGGYGENGQIQGALDFYGI 92 (317)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTSCTTHH-------------------HH-TTCCEEEECCCSGGGTSSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchHHHh-------------------hh-cCCCEEEEcCCCCCCchHHHHHHHHHcCC
Confidence 56789999999999999998521111111 00 033444311111 12245567788899
Q ss_pred c-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHH----HHhCCCEEEeecCCCCCCCCeEEcCCHHHH
Q 042131 100 D-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAG----KQFGYPLMVKSKSLAYDGRGNAVAKSEEEL 174 (201)
Q Consensus 100 ~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~----~~~~~P~VvKp~~g~~~g~gv~~~~~~~el 174 (201)
+ ++++.+++.++.||..++++|+++|||+|++..+++.+++..++ ++++||+||||..|+ +|+||+++++.+|+
T Consensus 93 p~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~-~s~Gv~~v~~~~el 171 (317)
T 4eg0_A 93 RYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEG-SSVAVLKVKTADAL 171 (317)
T ss_dssp EESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC------CCEEECSGGGH
T ss_pred CeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHH
Confidence 5 57899999999999999999999999999999998888777776 789999999999976 89999999999999
Q ss_pred HHHHHHhcCCCCceEEeecCC-CceeeC
Q 042131 175 SSAITALGGFDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 175 ~~~~~~~~~~~~~~lvEe~i~-G~e~sv 201 (201)
.++++........+||||||+ |.||+|
T Consensus 172 ~~a~~~~~~~~~~~lvEe~i~~G~E~~v 199 (317)
T 4eg0_A 172 PAALSEAATHDKIVIVEKSIEGGGEYTA 199 (317)
T ss_dssp HHHHHHHTTTCSEEEEEECCCSSEEEEE
T ss_pred HHHHHHHHhCCCeEEEEcCCCCCcEEEE
Confidence 999988776667799999999 999985
No 25
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.90 E-value=1.5e-23 Score=183.07 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=138.9
Q ss_pred chhhhhc-c---cccccccccC---------CCeEEEECC-----CCCcccccCCCCCCCCCCccc-------cCCCCHh
Q 042131 17 PTIHCRR-G---RRFPVDRPLK---------DSRLWELDS-----GAIAARGISPPPLLDSARPEV-------HNFELPV 71 (201)
Q Consensus 17 ~~i~~~~-g---~~l~~aa~~~---------G~~v~~~~~-----~~~~~~~~~~~~~~~a~~~~~-------~~~~d~~ 71 (201)
.+|++.+ | .+++++++++ |++++++.+ .+.+..++ +|+.+. .+|.|.+
T Consensus 57 ~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~-------ADe~v~i~~~~~~~syld~~ 129 (587)
T 3jrx_A 57 EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKM-------ADHYVPVPGGPNNNNYANVE 129 (587)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHH-------SSEEEECCCSSGGGTTTCHH
T ss_pred CEEEEECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHh-------CCEEEEeCCCCccccccCHH
Confidence 3555543 2 2667888865 899988754 34555566 666543 3688887
Q ss_pred hhh------cCCeEEeccc--cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc---------
Q 042131 72 AVV------ACGVLTVEIE--HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME--------- 133 (201)
Q Consensus 72 ~l~------~~d~i~~~~~--~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------- 133 (201)
+++ .+|++..... .-...+.+.+++.|++ ++|++++++.+.||..++++|+++|||+|++..
T Consensus 130 ~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~ 209 (587)
T 3jrx_A 130 LIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTE 209 (587)
T ss_dssp HHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC--
T ss_pred HHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccc
Confidence 776 6676653322 2234567888999985 579999999999999999999999999999876
Q ss_pred --------------------cCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC--CCCceEEe
Q 042131 134 --------------------VNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG--FDRSLYIE 191 (201)
Q Consensus 134 --------------------~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~--~~~~~lvE 191 (201)
+++.+++.++++++|||+||||..|+ ||+||+++++.+|+.++++.+.. ....++||
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~Gg-GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVE 288 (587)
T 3jrx_A 210 DDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLM 288 (587)
T ss_dssp ----CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCC-SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEE
T ss_pred cccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCC-CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEE
Confidence 78999999999999999999999986 99999999999999999987642 23459999
Q ss_pred ecCCC-ceeeC
Q 042131 192 KWAPF-VKVNV 201 (201)
Q Consensus 192 e~i~G-~e~sv 201 (201)
+||+| .|++|
T Consensus 289 eyI~g~rei~V 299 (587)
T 3jrx_A 289 KLAQHARHLEV 299 (587)
T ss_dssp ECCCSCEEEEE
T ss_pred EecCCCcEEEE
Confidence 99999 88875
No 26
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.89 E-value=2.3e-24 Score=191.44 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=135.7
Q ss_pred Cchhhhhc----ccccccccccCCCeEEEECC-CCCcc--cccCCCCCCCCCCccc-------cCCCCHhhhh------c
Q 042131 16 SPTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAA--RGISPPPLLDSARPEV-------HNFELPVAVV------A 75 (201)
Q Consensus 16 ~~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~--~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~ 75 (201)
..+|++.+ +++++++|+++|++++++++ .+.+. .++ +|..+. .+|.|.+.+. .
T Consensus 28 ~~kILI~g~Geia~~iiraar~lGi~~vav~s~~d~~a~~~~~-------AD~~~~i~~~~~~~syld~~~i~~~a~~~~ 100 (675)
T 3u9t_A 28 IQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAE-------ADIAVDLGGAKPADSYLRGDRIIAAALASG 100 (675)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHHTCEEEEEECSGGGGCHHHHT-------CSEEEECCCSSGGGTTTCHHHHHHHHHHTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCchhHhh-------CCEEEEcCCCccccCccCHHHHHHHHHHhC
Confidence 35677654 36888999999999999977 44433 344 565442 5788877776 5
Q ss_pred CCeEEeccc--cCCHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccc--cCCHHHHHHHHHHhCCC
Q 042131 76 CGVLTVEIE--HVDVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFME--VNDLESARRAGKQFGYP 150 (201)
Q Consensus 76 ~d~i~~~~~--~i~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P 150 (201)
+|++....+ .-...+++.+++.|+ .++|++++++.+.||..++++|+++|+|+|+++. +++.+++.++++++|||
T Consensus 101 ~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~igyP 180 (675)
T 3u9t_A 101 AQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYP 180 (675)
T ss_dssp CSEEECCSSTTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHSCSS
T ss_pred cCEEEeCCcccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhCCCc
Confidence 677763332 223567888999998 4689999999999999999999999999999775 78999999999999999
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
+||||..|+ ||+|++++++.+|+.++++.+.. ..+.+++|+||+| .+++|
T Consensus 181 vvvKp~~G~-Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev 237 (675)
T 3u9t_A 181 VLLKAAAGG-GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEI 237 (675)
T ss_dssp BCCBCCC-------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEE
T ss_pred EEEEECCCC-CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEE
Confidence 999999976 99999999999999999865432 1346999999999 56653
No 27
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.89 E-value=4.9e-23 Score=175.25 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=135.3
Q ss_pred chhhhhcc--c--ccccccccC-CCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecccc
Q 042131 17 PTIHCRRG--R--RFPVDRPLK-DSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEH 85 (201)
Q Consensus 17 ~~i~~~~g--~--~l~~aa~~~-G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~ 85 (201)
.+|+++++ | .++.++++. |+..+++.+ .++.... .+..+..++.|.+.+. .+|.+....+.
T Consensus 22 m~ilvlG~ggre~ala~~l~~s~~v~~v~~~p-gn~g~~~-------~~~~~~i~~~d~~~l~~~a~~~~id~vv~g~E~ 93 (442)
T 3lp8_A 22 MNVLVIGSGGREHSMLHHIRKSTLLNKLFIAP-GREGMSG-------LADIIDIDINSTIEVIQVCKKEKIELVVIGPET 93 (442)
T ss_dssp EEEEEEECSHHHHHHHHHHTTCTTEEEEEEEE-CCGGGTT-------TSEECCCCTTCHHHHHHHHHHTTCCEEEECSHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCCEEEEEC-CChHHhh-------ccceeecCcCCHHHHHHHHHHhCCCEEEECCcH
Confidence 45666633 4 355555555 455555543 2343333 3444455777887776 56777665444
Q ss_pred CCH-HHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC
Q 042131 86 VDV-AIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR 163 (201)
Q Consensus 86 i~~-~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~ 163 (201)
... .+++.+++.|+++ +++.++++++.||..++++|+++|||+|++..+++.+++.+++++++||+||||..|+ +|+
T Consensus 94 ~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~-gg~ 172 (442)
T 3lp8_A 94 PLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPLVVKADGLA-QGK 172 (442)
T ss_dssp HHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSCSSEEEEESSCC-TTT
T ss_pred HHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcCCcEEEeECCCC-CCC
Confidence 322 3567888999965 6999999999999999999999999999999999999999999999999999999865 999
Q ss_pred CeEEcCCHHHHHHHHHHhcCC------CCceEEeecCCCceeeC
Q 042131 164 GNAVAKSEEELSSAITALGGF------DRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~~------~~~~lvEe~i~G~e~sv 201 (201)
||+++++.+|+.++++.+... ...++|||||+|.|+||
T Consensus 173 GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G~E~sv 216 (442)
T 3lp8_A 173 GTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEGKEISF 216 (442)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEEEEE
T ss_pred eEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecCcEEEE
Confidence 999999999999999876421 24699999999999986
No 28
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.89 E-value=3.6e-23 Score=171.68 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=121.4
Q ss_pred chhhhhc----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccC-CCCHhhhh----cCCeEEeccccC
Q 042131 17 PTIHCRR----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHN-FELPVAVV----ACGVLTVEIEHV 86 (201)
Q Consensus 17 ~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~-~~d~~~l~----~~d~i~~~~~~i 86 (201)
++|++++ |++++.+|+++||+|+++|. ++.+..++ +|..+..+ +.|.+.+. .+|++....++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~-------aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 74 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNY-------ADEFYCFDVIKEPEKLLELSKRVDAVLPVNENL 74 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTT-------SSEEEECCTTTCHHHHHHHHTSSSEEEECCCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHhh-------CCEEEECCCCcCHHHHHHHhcCCCEEEECCCCh
Confidence 4566664 46899999999999999999 88888888 78765544 55666555 889888777765
Q ss_pred CH-HHHHHH-HHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 87 DV-AIMEKL-EQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 87 ~~-~~~~~l-~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
.. .....+ ++.|+++++++++++++.||..+|++|+++|+|+|++.. ++||+||||..|+ ||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~-------------ig~P~vvKp~~g~-g~~g 140 (363)
T 4ffl_A 75 ACIEFLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP-------------SKPPYFVKPPCES-SSVG 140 (363)
T ss_dssp HHHHHHHHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC-------------SSSCEEEECSSCC-TTTT
T ss_pred hHHHHHHHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee-------------cCCCEEEEECCCC-CCcC
Confidence 43 233334 455567899999999999999999999999999999763 5899999999976 9999
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+++++|.+++.. ....+++||||+|.|+||
T Consensus 141 v~~v~~~~~~~~-------~~~~~~~ee~i~g~e~sv 170 (363)
T 4ffl_A 141 ARIIYDDKDLEG-------LEPDTLVEEYVEGEVVSL 170 (363)
T ss_dssp CEEEC------C-------CCTTCEEEECCCSEEEEE
T ss_pred eEEeccHHHhhh-------hccchhhhhhccCcEEEE
Confidence 999999988653 234599999999999986
No 29
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.89 E-value=1.4e-22 Score=163.82 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=123.5
Q ss_pred hhhhcccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccc---cCCHHHHHHHH
Q 042131 19 IHCRRGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIE---HVDVAIMEKLE 95 (201)
Q Consensus 19 i~~~~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~---~i~~~~~~~l~ 95 (201)
+.+.++++++++++++||++++++..+.+...+ .. . .+|++..... .-...+...++
T Consensus 18 ~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~-------~~-------~------~~d~v~~~~~~~~~e~~~~~~~~e 77 (306)
T 1iow_A 18 VSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL-------KS-------M------GFQKVFIALHGRGGEDGTLQGMLE 77 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT-------TT-------T------TEEEEEECCCSTTTSSSHHHHHHH
T ss_pred EcHHhHHHHHHHHHHCCCeEEEEecCchHHHHh-------hc-------c------CCCEEEEcCCCCCCcchHHHHHHH
Confidence 444577889999999999999998732222222 10 0 2333332210 01112344567
Q ss_pred HCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHH--------HHHHhCCCEEEeecCCCCCCCCeE
Q 042131 96 QQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARR--------AGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 96 ~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~--------~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
..|++ ++++++++.++.||..++++|+++|||+|++..+++. ++.+ +.++++||+|+||..|+ +|+||+
T Consensus 78 ~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~-~~~gv~ 155 (306)
T 1iow_A 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLAEISALGLPVIVKPSREG-SSVGMS 155 (306)
T ss_dssp HHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCC-TTTTCE
T ss_pred HcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhhHHhccCCCEEEEeCCCC-CCCCEE
Confidence 77885 4799999999999999999999999999999988887 6666 67789999999999976 899999
Q ss_pred EcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 167 VAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
++++.+|+..+++.+......+++||||+|.||+|
T Consensus 156 ~v~~~~el~~~~~~~~~~~~~~lvee~i~g~e~~v 190 (306)
T 1iow_A 156 KVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 (306)
T ss_dssp EESSGGGHHHHHHHHTTTCSEEEEEECCCCCEEEE
T ss_pred EeCCHHHHHHHHHHHHhhCCCEEEEeCcCCEEEEE
Confidence 99999999999988764456699999999999985
No 30
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.89 E-value=3.1e-25 Score=180.86 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=116.7
Q ss_pred cccccccccccCCCeEEEECC-CCCc---ccccCCCCCCCCCCccccC-CCCHhhhh-cCCeEEeccccCCHHHHHHHHH
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIA---ARGISPPPLLDSARPEVHN-FELPVAVV-ACGVLTVEIEHVDVAIMEKLEQ 96 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~---~~~~~~~~~~~a~~~~~~~-~~d~~~l~-~~d~i~~~~~~i~~~~~~~l~~ 96 (201)
.+++++.+|+++|++|+++|. .+.| +.++ +|..++.+ +.| +. ..|+++++.+++....++.+++
T Consensus 12 l~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~-------ad~~~~~~~~~d---l~~~~dvitpe~e~v~~~~l~~le~ 81 (320)
T 2pbz_A 12 SSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPI-------VDDLVVAEEMTS---ILNDDGIVVPHGSFVAYLGIEAIEK 81 (320)
T ss_dssp THHHHHHHHHHTTCCEEEEECTTTHHHHHTCTT-------CSEEEECSCSCC---TTCCSSBCCCBTTHHHHSCHHHHHT
T ss_pred hHHHHHHHHHHCCCEEEEEECCCCCccchhhhc-------CCeEEECCcHHH---HHhcCCEEEecccchhHHHHHHHHH
Confidence 467999999999999999999 6666 6778 88877777 666 43 6788888888775555677788
Q ss_pred CCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHH
Q 042131 97 QGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSS 176 (201)
Q Consensus 97 ~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~ 176 (201)
.|++++++.++++...||...+++|+++|||+|+++. .+++ +++||+||||..|+ ||+|+++++| +|+..
T Consensus 82 ~~~p~~p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~---~ee~-----~i~~PviVKp~~g~-ggkG~~~v~~-eel~~ 151 (320)
T 2pbz_A 82 AKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVVE---PEDA-----KPDELYFVRIEGPR-GGSGHFIVEG-SELEE 151 (320)
T ss_dssp CCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC---SCCC-----CSSCCEEEECC-------------C-EECSC
T ss_pred cCCCcCCCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC---HhHc-----CcCCcEEEEECCCC-CCCCEEEECh-HHHHH
Confidence 8888999999999999999999999999999999883 3332 47999999999987 9999999999 99887
Q ss_pred HHHHhcCCCCceEEeecCCCceee
Q 042131 177 AITALGGFDRSLYIEKWAPFVKVN 200 (201)
Q Consensus 177 ~~~~~~~~~~~~lvEe~i~G~e~s 200 (201)
+++.+. ..++|||||+|.+++
T Consensus 152 ~~~~~~---~~~IiEEfI~g~~~~ 172 (320)
T 2pbz_A 152 RLSTLE---EPYRVERFIPGVYLY 172 (320)
T ss_dssp CCC-------CCEEEECCCSCEEE
T ss_pred HHHhcC---CCEEEEeeeceEecc
Confidence 665442 359999999999975
No 31
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.89 E-value=7.9e-24 Score=188.20 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=86.6
Q ss_pred hhhhhc----ccccccccccCCCeEEEECC-C--CCcccccCCCCCCCCCCccc-------cCCCCHhhhh------cCC
Q 042131 18 TIHCRR----GRRFPVDRPLKDSRLWELDS-G--AIAARGISPPPLLDSARPEV-------HNFELPVAVV------ACG 77 (201)
Q Consensus 18 ~i~~~~----g~~l~~aa~~~G~~v~~~~~-~--~~~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~d 77 (201)
+|++.+ +.+++++|+++|++++++++ . +.+..++ +|+.+. .+|.|.+.+. .+|
T Consensus 4 kiLIanrGeia~riiraar~lGi~~vav~sd~d~~a~~~~~-------aD~~~~i~p~~~~~syld~~~i~~~a~~~~~d 76 (681)
T 3n6r_A 4 KILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQM-------ADEAVHIGPPPANQSYIVIDKVMAAIRATGAQ 76 (681)
T ss_dssp CBCBSCCHHHHHHHHHHHGGGSCCBCCEECSTTSSCHHHHH-------SSCCEECSSSSGGGTTSCHHHHHHHHHHTCCS
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEEcCCCCCChhHHh-------CCEEEEcCCCCcccCccCHHHHHHHHHHhCcC
Confidence 455543 35888999999999998865 3 3444456 565543 3677877776 577
Q ss_pred eEEeccc--cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEE
Q 042131 78 VLTVEIE--HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLM 152 (201)
Q Consensus 78 ~i~~~~~--~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~V 152 (201)
++....+ .-...+++.+++.|++ ++|++++++.+.||..++++|+++|+|+|+++ .+++.+++.++++++|||+|
T Consensus 77 aI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvV 156 (681)
T 3n6r_A 77 AVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVM 156 (681)
T ss_dssp CCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-----------------------
T ss_pred EEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEE
Confidence 7763322 2235677889999985 57999999999999999999999999999975 78899999999999999999
Q ss_pred EeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 153 VKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 153 vKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
|||..|+ ||+|++++++.+|+.++++.+.. ..+.+++|+||+| .+++|
T Consensus 157 vKp~~gg-ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V 211 (681)
T 3n6r_A 157 IKASAGG-GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEI 211 (681)
T ss_dssp -----------------------------------------------CCSCEEEEE
T ss_pred EEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEE
Confidence 9999976 99999999999999998876532 1346999999999 57764
No 32
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.88 E-value=9.2e-24 Score=175.02 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=126.5
Q ss_pred hhhhhc---ccccccccccCCCeEEEECC-CCCc---ccccCCCCCCCCCCccccC-CCC---Hhhhh----cCCeEEec
Q 042131 18 TIHCRR---GRRFPVDRPLKDSRLWELDS-GAIA---ARGISPPPLLDSARPEVHN-FEL---PVAVV----ACGVLTVE 82 (201)
Q Consensus 18 ~i~~~~---g~~l~~aa~~~G~~v~~~~~-~~~~---~~~~~~~~~~~a~~~~~~~-~~d---~~~l~----~~d~i~~~ 82 (201)
+|+++. +++++++|+++|++|+++|. .+.| ..++ ++..++.+ ++| .+.+. ..++++++
T Consensus 20 ~I~ilGs~l~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~-------ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe 92 (361)
T 2r7k_A 20 TIATLGSHTSLHILKGAKLEGFSTVCITMKGRDVPYKRFKV-------ADKFIYVDNFSDIKNEEIQEKLRELNSIVVPH 92 (361)
T ss_dssp EEEEESSTTHHHHHHHHHHTTCCEEEEECTTSCHHHHHTTC-------CSEEEECSSGGGGGSHHHHHHHHHTTEEECCB
T ss_pred EEEEECcHHHHHHHHHHHHCCCEEEEEECCCCCCccccccc-------CceEEECCCcccccHHHHHHHHHHcCCEEEeC
Confidence 455553 47999999999999999998 6666 5667 78777666 555 33333 44666565
Q ss_pred cccCCHHHHHHHH-HCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC
Q 042131 83 IEHVDVAIMEKLE-QQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 83 ~~~i~~~~~~~l~-~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
.+.+....+..++ +.|++++++..++++..||...+++|+++|||+|++ +++.+++ +||+||||..++ +
T Consensus 93 ~~~v~~~gl~~l~~~~g~~v~g~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~~~e~-------~~PvVVK~~~~a-~ 162 (361)
T 2r7k_A 93 GSFIAYCGLDNVENSFLVPMFGNRRILRWESERSLEGKLLREAGLRVPKK--YESPEDI-------DGTVIVKFPGAR-G 162 (361)
T ss_dssp HHHHHHHCHHHHHHTCCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESSGGGC-------CSCEEEECSCCC-C
T ss_pred chhhhHHHHHHHHHHcCCCcCCCHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCCHHHc-------CCCEEEeeCCCC-C
Confidence 5555433455555 788888889999999999999999999999999986 4666544 699999999987 9
Q ss_pred CCCeEEcCCHHHHHHHHHHhcC-C----C--CceEEeecCCCceee
Q 042131 162 GRGNAVAKSEEELSSAITALGG-F----D--RSLYIEKWAPFVKVN 200 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~-~----~--~~~lvEe~i~G~e~s 200 (201)
|+||++++|.+|+.++++.+.. . . ..++|||||+|.|+|
T Consensus 163 GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G~e~s 208 (361)
T 2r7k_A 163 GRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFC 208 (361)
T ss_dssp ---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCSEEEE
T ss_pred CCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccceEEee
Confidence 9999999999999999977521 1 1 359999999999986
No 33
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.88 E-value=9.6e-23 Score=171.97 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=126.0
Q ss_pred hhhhh--cccccccc---cccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhh---cCCeEEeccccCCHH
Q 042131 18 TIHCR--RGRRFPVD---RPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVV---ACGVLTVEIEHVDVA 89 (201)
Q Consensus 18 ~i~~~--~g~~l~~a---a~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~---~~d~i~~~~~~i~~~ 89 (201)
+|+++ .||+.+.+ ++++| +|+++. .+|+... ++..+ +......+. .+|.+....+....
T Consensus 17 ~vlviG~Ggr~~a~a~~~a~~~g-~v~~~~--~np~~~~-------~d~~i--d~~~l~~~~~~~~~d~V~~~~E~~~~- 83 (412)
T 1vkz_A 17 RVHILGSGGREHAIGWAFAKQGY-EVHFYP--GNAGTKR-------DGTNH--PYEGEKTLKAIPEEDIVIPGSEEFLV- 83 (412)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTC-EEEEEE--CCTTGGG-------TSEEC--CCCTHHHHHTSCSSCEECCSSGGGTC-
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-CEEEEC--CChhhhc-------ccccC--CHHHHHHHHHHcCCCEEEECCcHHHH-
Confidence 55555 34554433 68899 988884 3455666 55442 333333332 67877765555432
Q ss_pred HHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcC
Q 042131 90 IMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAK 169 (201)
Q Consensus 90 ~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~ 169 (201)
...++..+..+++++++++++.||..++++|+++|||+|++..+++.+++.+++++++||+||||..|+ +|+||++++
T Consensus 84 -a~~~~~l~~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~g~PvvvKp~~~~-gg~Gv~~v~ 161 (412)
T 1vkz_A 84 -EGVSNWRSNVFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLA-RGKGVLILD 161 (412)
T ss_dssp -C-----CTTBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSCSSEEEEESSCC-SSCCEEEES
T ss_pred -HHHHHHhhhhhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEEC
Confidence 133344444568999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred CHHHHHHHHHHhcC------CCCceEEeecCCCceeeC
Q 042131 170 SEEELSSAITALGG------FDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 170 ~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~sv 201 (201)
|.+|+.++++.+.. ..+.++|||||+|.||||
T Consensus 162 ~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G~E~sv 199 (412)
T 1vkz_A 162 SKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSA 199 (412)
T ss_dssp SHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCSEEEEE
T ss_pred CHHHHHHHHHHHHhhccccCCCCeEEEEECCcCcEEEE
Confidence 99999999877531 113699999999999986
No 34
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.88 E-value=1.7e-22 Score=167.49 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=98.3
Q ss_pred HHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH---HHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 89 AIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE---SARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 89 ~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
.+...|+..|+ .++++..++.++.||..++++|+++|||+|++..+.+.+ .+.++.+++|||+||||..|+ +|+|
T Consensus 114 ~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg-~s~G 192 (357)
T 4fu0_A 114 TLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAG-SSFG 192 (357)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCS-SSTT
T ss_pred HHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhcCCCEEEEECCCC-CCCc
Confidence 34567889999 469999999999999999999999999999998776543 344566789999999999976 8999
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
++++++.+||.+++.........+++|+||+|.|++|
T Consensus 193 v~~v~~~~el~~~~~~a~~~~~~vlvE~~i~G~e~~v 229 (357)
T 4fu0_A 193 ITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGC 229 (357)
T ss_dssp CEEESSHHHHHHHHHHHTTTCSEEEEEECCCSEEEEE
T ss_pred eEEeccHHhHHHHHHHHhccCCeEEEEEecCCEEEEE
Confidence 9999999999999998877777899999999999875
No 35
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.88 E-value=1.8e-22 Score=167.75 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=131.4
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccCC--------CCC-CC----CCCc-cccCCCCHh--------hh
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISP--------PPL-LD----SARP-EVHNFELPV--------AV 73 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~--------~~~-~~----a~~~-~~~~~~d~~--------~l 73 (201)
--|.+.+|+.+++++++.||+|+.++. .+..+..... .+. .. .... +..+..... ..
T Consensus 17 ~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (364)
T 3i12_A 17 HEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPL 96 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEEECTTCSSSCEEETTTCCBC
T ss_pred ccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccceecccccccceecccccccc
Confidence 456677889999999999999998886 3322211100 000 00 0000 000000000 01
Q ss_pred hcCCeEEecccc---CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH----HHHHHHH
Q 042131 74 VACGVLTVEIEH---VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE----SARRAGK 145 (201)
Q Consensus 74 ~~~d~i~~~~~~---i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~----~~~~~~~ 145 (201)
..+|++.....+ -+..+...++..|++ ++++..++.++.||..++++|+++|||+|++..+++.+ ++.++.+
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 176 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVES 176 (364)
T ss_dssp CCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHH
T ss_pred CCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHH
Confidence 145665432211 122455678889995 58899999999999999999999999999999988877 7778888
Q ss_pred HhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 146 QFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 146 ~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+++||+||||..|+ +|.||+++++.+|+..+++.+......+|||+||+|.||+|
T Consensus 177 ~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G~E~~v 231 (364)
T 3i12_A 177 RLGLPLFVKPANQG-SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIEC 231 (364)
T ss_dssp HHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCCSEEEEE
T ss_pred hcCCCEEEEECCCC-CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcCCeEEEE
Confidence 99999999999976 88999999999999999987654455699999999999975
No 36
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.88 E-value=1.2e-22 Score=169.98 Aligned_cols=183 Identities=11% Similarity=0.079 Sum_probs=131.1
Q ss_pred hhhhhcccccccccccCCCeEEEECC-CCCcccccCCC----CCCC---------CCCccccCC-CC--------Hhhhh
Q 042131 18 TIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPP----PLLD---------SARPEVHNF-EL--------PVAVV 74 (201)
Q Consensus 18 ~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~----~~~~---------a~~~~~~~~-~d--------~~~l~ 74 (201)
-|.+.+|+.+++++++.||+|+.++. .+..+...... ...+ ......... .. .....
T Consensus 37 evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (386)
T 3e5n_A 37 EVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPGAQQQQLRPIQPEQALA 116 (386)
T ss_dssp HHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECTTCSSSCEEECC--CCCC
T ss_pred hhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeeccCccccceeccccccccC
Confidence 45566888999999999999999886 33211110000 0000 000000000 00 00011
Q ss_pred cCCeEEeccccC---CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH----HHHHHHHH
Q 042131 75 ACGVLTVEIEHV---DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE----SARRAGKQ 146 (201)
Q Consensus 75 ~~d~i~~~~~~i---~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~----~~~~~~~~ 146 (201)
.+|++.....+. +..+...++..|++ ++++..++.++.||..++++|+++|||+|++..+++.+ ++..+.++
T Consensus 117 ~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~ 196 (386)
T 3e5n_A 117 QIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQ 196 (386)
T ss_dssp CCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHh
Confidence 456554222111 12345678889995 68999999999999999999999999999999998877 77778889
Q ss_pred hCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 147 FGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 147 ~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
++||+||||..|+ +|.||+++++.+|+.++++.+......+|||+||+|.||+|
T Consensus 197 lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G~E~~v 250 (386)
T 3e5n_A 197 LGLPLFVKPANQG-SSVGVSQVRTADAFAAALALALAYDHKVLVEAAVAGREIEC 250 (386)
T ss_dssp HCSSEEEEESBSC-SSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSEEEEE
T ss_pred cCCCEEEEECCCC-cCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCCCeEEEE
Confidence 9999999999976 89999999999999999998876667799999999999975
No 37
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.88 E-value=2.6e-22 Score=170.29 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=131.6
Q ss_pred chhhhh--ccc--ccccccccCCC-eEEEECCCCCccc-ccCCCCCCCCC-CccccCCCCHhhhh------cCCeEEecc
Q 042131 17 PTIHCR--RGR--RFPVDRPLKDS-RLWELDSGAIAAR-GISPPPLLDSA-RPEVHNFELPVAVV------ACGVLTVEI 83 (201)
Q Consensus 17 ~~i~~~--~g~--~l~~aa~~~G~-~v~~~~~~~~~~~-~~~~~~~~~a~-~~~~~~~~d~~~l~------~~d~i~~~~ 83 (201)
.+|+++ +|| .++.++++.+. ..+.+.+. ++.. .. +. ..+..+..|.+.+. .+|.+....
T Consensus 4 mkvlviG~ggre~ala~~l~~s~~v~~v~~~pg-n~g~~~~-------~~~~~~~~~~~d~~~l~~~a~~~~id~vv~g~ 75 (431)
T 3mjf_A 4 MNILIIGNGGREHALGWKAAQSPLADKIYVAPG-NAGTALE-------PTLENVDIAATDIAGLLAFAQSHDIGLTIVGP 75 (431)
T ss_dssp EEEEEEECSHHHHHHHHHHTTCTTEEEEEEEEC-CHHHHHC-------TTCEECCCCTTCHHHHHHHHHHTTEEEEEECS
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEEECC-CHHHhhh-------cccceecCCcCCHHHHHHHHHHhCcCEEEECC
Confidence 456666 344 56666666653 33333332 2222 23 22 12445677777776 456665443
Q ss_pred ccCC-HHHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC
Q 042131 84 EHVD-VAIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 84 ~~i~-~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
+... ..+++.+++.|+++ +++.++++++.||..++++|+++|||+|++..+++.+++.+++++++||+||||..++ +
T Consensus 76 e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~-g 154 (431)
T 3mjf_A 76 EAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLA-A 154 (431)
T ss_dssp HHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHCSSEEEEESSSC-T
T ss_pred chHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHcCCeEEEEECCCC-C
Confidence 3321 23567888999965 6999999999999999999999999999999999999999999999999999999865 9
Q ss_pred CCCeEEcCCHHHHHHHHHHhc------CCCCceEEeecCCCceeeC
Q 042131 162 GRGNAVAKSEEELSSAITALG------GFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~------~~~~~~lvEe~i~G~e~sv 201 (201)
|+||++++|.+|+.++++.+. .....++|||||+|.|+||
T Consensus 155 g~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G~E~sv 200 (431)
T 3mjf_A 155 GKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASF 200 (431)
T ss_dssp TCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCSEEEEE
T ss_pred CCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCCcEEEE
Confidence 999999999999999998654 2234699999999999986
No 38
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.88 E-value=8.8e-23 Score=166.94 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=118.7
Q ss_pred ccccccccccCCCeEEEECC-CCCc---ccccCCCCCCCCCCccccC-CCCHhhhh-cCCeEEeccccCCHHHHHHHHHC
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIA---ARGISPPPLLDSARPEVHN-FELPVAVV-ACGVLTVEIEHVDVAIMEKLEQQ 97 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~---~~~~~~~~~~~a~~~~~~~-~~d~~~l~-~~d~i~~~~~~i~~~~~~~l~~~ 97 (201)
+++++++++++|+++++++. .+.+ .... ++..+..+ +.+ ..+. ..|++....+......++.|+..
T Consensus 13 ~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d-~~l~~~~d~i~~~~e~~~~~~~~~le~~ 84 (334)
T 2r85_A 13 ALQILKGAKDEGFETIAFGSSKVKPLYTKYFP-------VADYFIEEKYPE-EELLNLNAVVVPTGSFVAHLGIELVENM 84 (334)
T ss_dssp HHHHHHHHHHTTCCEEEESCGGGHHHHHTTSC-------CCSEEECSSCCH-HHHHHTTEEECCCTTHHHHHCHHHHHTC
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCcccccccc-------cCceEecCCcCh-HHhcccCCEEEECcchhhhhHHHHHHHc
Confidence 57899999999999999998 4433 2334 45554444 444 4444 45666544333323334566788
Q ss_pred CCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHH
Q 042131 98 GVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSA 177 (201)
Q Consensus 98 g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~ 177 (201)
|++..++++++.++.||..++++|+++|||+|++ +++.++ ++||+||||..|+ +|+||+++++.+|+..+
T Consensus 85 g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~-------l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~ 154 (334)
T 2r85_A 85 KVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEV--YEDPDD-------IEKPVIVKPHGAK-GGKGYFLAKDPEDFWRK 154 (334)
T ss_dssp CSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CSCGGG-------CCSCEEEEECC-----TTCEEESSHHHHHHH
T ss_pred CCCccCCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cCChHH-------cCCCEEEEeCCCC-CCCCEEEECCHHHHHHH
Confidence 8887788899999999999999999999999998 566553 5799999999976 99999999999999999
Q ss_pred HHHhcCC-----CCceEEeecCCCceee
Q 042131 178 ITALGGF-----DRSLYIEKWAPFVKVN 200 (201)
Q Consensus 178 ~~~~~~~-----~~~~lvEe~i~G~e~s 200 (201)
++.+... ...+++||||+|.|++
T Consensus 155 ~~~~~~~~~~~~~~~~lvee~i~G~e~~ 182 (334)
T 2r85_A 155 AEKFLGIKRKEDLKNIQIQEYVLGVPVY 182 (334)
T ss_dssp HHHHHCCCSGGGCCSEEEEECCCCEEEE
T ss_pred HHHHHhhcccCCCCcEEEEeccCCceeE
Confidence 9876421 2569999999999987
No 39
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.88 E-value=5.1e-22 Score=164.95 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=129.5
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCCCCCC--Cccc---cCCCCHhhh-------hcCCeEEecc
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSA--RPEV---HNFELPVAV-------VACGVLTVEI 83 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~--~~~~---~~~~d~~~l-------~~~d~i~~~~ 83 (201)
-.+.+.+|+.+++++++.||+++.++. .+..+..... .....+ ..+. ........+ ...|++....
T Consensus 17 ~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 95 (364)
T 2i87_A 17 HEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNN-ITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLL 95 (364)
T ss_dssp HHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECC-CCSCCCSGGGSCGGGSEEECSSGGGGBCTTSSBCSEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccc-cccccccchhhcccccccccccccccccccccCCCEEEEeC
Confidence 345566788999999999999999876 4332221100 000000 0000 000000011 1567665332
Q ss_pred cc---CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH-------HHHHHHHHhCCCEE
Q 042131 84 EH---VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE-------SARRAGKQFGYPLM 152 (201)
Q Consensus 84 ~~---i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~-------~~~~~~~~~~~P~V 152 (201)
.. -...+...++..|++ ++++.+++.++.||..++++|+++|||+|++..+++.+ ++.++.++++||+|
T Consensus 96 ~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g~Pvv 175 (364)
T 2i87_A 96 HGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVF 175 (364)
T ss_dssp CCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCSSEE
T ss_pred CCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHHHHhcCCCEE
Confidence 11 122345667788885 47889999999999999999999999999999888765 46666778999999
Q ss_pred EeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 153 VKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 153 vKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|||..|+ +|+||+++++.+|+..+++.+......+|||+||+|.||+|
T Consensus 176 vKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G~E~~v 223 (364)
T 2i87_A 176 VKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEV 223 (364)
T ss_dssp EEESSCS-SCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCCCEEEEE
T ss_pred EEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCccCeEEEE
Confidence 9999976 89999999999999999988765556799999999999975
No 40
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.88 E-value=8.4e-23 Score=165.61 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=120.4
Q ss_pred hhhhcccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccccC---CHHHHHHHH
Q 042131 19 IHCRRGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEHV---DVAIMEKLE 95 (201)
Q Consensus 19 i~~~~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~i---~~~~~~~l~ 95 (201)
+.+.+++.+++++++.||+++.++..+.. ..+ ..+...|++....... ...+...++
T Consensus 19 vs~~s~~~v~~al~~~g~~v~~i~~~~~~-~~~-------------------~~~~~~D~v~~~~~~~~ge~~~~~~~le 78 (307)
T 3r5x_A 19 VSIMTGNEMIANLDKNKYEIVPITLNEKM-DLI-------------------EKAKDIDFALLALHGKYGEDGTVQGTLE 78 (307)
T ss_dssp HHHHHHHHHHHHSCTTTEEEEEEECSSGG-GHH-------------------HHTTTCSEEEECCCSHHHHSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcccCch-hHH-------------------HhccCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 33456789999999999999999861111 011 1111445543222110 112345678
Q ss_pred HCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHH-HHHHhCCCEEEeecCCCCCCCCeEEcCCHHH
Q 042131 96 QQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARR-AGKQFGYPLMVKSKSLAYDGRGNAVAKSEEE 173 (201)
Q Consensus 96 ~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~-~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~e 173 (201)
..|++ ++++.++++++.||..++++|+++|||+|++..+++.+++.. +.++++||+|+||..|+ +|+||+++++.+|
T Consensus 79 ~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~e 157 (307)
T 3r5x_A 79 SLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLGFPLVVKPNSGG-SSVGVKIVYDKDE 157 (307)
T ss_dssp HHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHHCSSEEEEECC-----CCCEEECSHHH
T ss_pred HcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhcCCCEEEEeCCCC-CCCCEEEeCCHHH
Confidence 88885 468899999999999999999999999999999888776654 67889999999999976 8999999999999
Q ss_pred HHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 174 LSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 174 l~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+.++++.+......+++||||+|.||+|
T Consensus 158 l~~~~~~~~~~~~~~lvee~i~G~e~~v 185 (307)
T 3r5x_A 158 LISMLETVFEWDSEVVIEKYIKGEEITC 185 (307)
T ss_dssp HHHHHHHHHHHCSEEEEEECCCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCcCCEEEEE
Confidence 9999987654445699999999999985
No 41
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.88 E-value=6.2e-22 Score=183.85 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=133.6
Q ss_pred ccccccccccCCCeEEEECC-CCC--cccccCCCCCCCCCCccccCCCCHhhhh------cCCeEEecccc-----CCHH
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAI--AARGISPPPLLDSARPEVHNFELPVAVV------ACGVLTVEIEH-----VDVA 89 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~--~~~~~~~~~~~~a~~~~~~~~~d~~~l~------~~d~i~~~~~~-----i~~~ 89 (201)
|++++++++++||+|+++++ ++. +...+ ++..+..+ .+.+.+. .+|++....+. ....
T Consensus 30 g~~~~~al~~~G~~vv~v~~~~~~~~~~~~~-------ad~~~i~p-~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~ 101 (1073)
T 1a9x_A 30 GAQACKALREEGYRVINVNSNPATIMTDPEM-------ADATYIEP-IHWEVVRKIIEKERPDAVLPTMGGQTALNCALE 101 (1073)
T ss_dssp HHHHHHHHHHHTCEEEEECSCTTCGGGCGGG-------SSEEECSC-CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCcccccCChhh-------CcEEEECC-CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHH
Confidence 45688999999999999998 544 22345 56655444 3555444 67887654432 1112
Q ss_pred HHH--HHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 90 IME--KLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 90 ~~~--~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
+.+ .+++.|++ ++++.++++.+.||..++++|+++|+|+|++..+++.+++.++++++|||+||||..|+ ||+|++
T Consensus 102 l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~ig~PvVvKp~~~~-Gg~Gv~ 180 (1073)
T 1a9x_A 102 LERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTM-GGSGGG 180 (1073)
T ss_dssp HHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHCSSEEEEETTCC-TTTTCE
T ss_pred HHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCC-CCCceE
Confidence 222 56788884 57999999999999999999999999999999999999999999999999999999975 899999
Q ss_pred EcCCHHHHHHHHHHhc--CCCCceEEeecCCC-ceeeC
Q 042131 167 VAKSEEELSSAITALG--GFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~--~~~~~~lvEe~i~G-~e~sv 201 (201)
+++|.+|+.+++.... ...++++|||||+| .||+|
T Consensus 181 iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v 218 (1073)
T 1a9x_A 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 (1073)
T ss_dssp EESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEE
T ss_pred EeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEE
Confidence 9999999999987643 23356999999999 58875
No 42
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.87 E-value=8.8e-22 Score=182.85 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=130.9
Q ss_pred CCCchhhhhccc---------------ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh---
Q 042131 14 LPSPTIHCRRGR---------------RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV--- 74 (201)
Q Consensus 14 ~~~~~i~~~~g~---------------~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~--- 74 (201)
...++|++++|. +++.+++++||++++++. ++........ ++..+. +..+.+.+.
T Consensus 557 ~~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~-----ad~~~~-~p~~~e~v~~i~ 630 (1073)
T 1a9x_A 557 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDT-----SDRLYF-EPVTLEDVLEIV 630 (1073)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTS-----SSEEEC-CCCSHHHHHHHH
T ss_pred ccCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEEEEecCCccccccccc-----ccEEEe-ccchhhhhhhhh
Confidence 356788877543 348899999999999998 5443222100 344332 223444443
Q ss_pred ---cCCeEEecccc-CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCC
Q 042131 75 ---ACGVLTVEIEH-VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGY 149 (201)
Q Consensus 75 ---~~d~i~~~~~~-i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 149 (201)
..|.+....+. ....++..|++.|++ +++++++++++.||..++++|+++|||+|++..+++.+++.++++++||
T Consensus 631 ~~e~~d~Vi~~~g~~~~~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~ig~ 710 (1073)
T 1a9x_A 631 RIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGY 710 (1073)
T ss_dssp HHHCCSEEECSSSTHHHHTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCS
T ss_pred hhcCcceEEeecCCchHHHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHcCC
Confidence 66776644432 223456788889985 5799999999999999999999999999999999999999999999999
Q ss_pred CEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC--CCCceEEeecCCCc-eeeC
Q 042131 150 PLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG--FDRSLYIEKWAPFV-KVNV 201 (201)
Q Consensus 150 P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~--~~~~~lvEe~i~G~-e~sv 201 (201)
|+||||..|+ ||+|+++++|.+|+.+++..+.. ..+.++||+||+|. |++|
T Consensus 711 PvvVKP~~~~-gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V 764 (1073)
T 1a9x_A 711 PLVVRASYVL-GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDV 764 (1073)
T ss_dssp SEEEEC--------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEE
T ss_pred CEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEE
Confidence 9999999976 99999999999999999987642 23459999999999 9875
No 43
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.87 E-value=1.8e-22 Score=165.21 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=109.1
Q ss_pred chhhhhccc---ccccccccC-C-CeEEEECC-CCCcccccCCCCCCCCCCccccC-CCC---Hhhhh------cCCeEE
Q 042131 17 PTIHCRRGR---RFPVDRPLK-D-SRLWELDS-GAIAARGISPPPLLDSARPEVHN-FEL---PVAVV------ACGVLT 80 (201)
Q Consensus 17 ~~i~~~~g~---~l~~aa~~~-G-~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~-~~d---~~~l~------~~d~i~ 80 (201)
.+|+++++. .+++++++. | ++|++++. ++.+.... ++..+..+ +.+ .+.+. .+|++.
T Consensus 5 ~~Ili~g~g~~~~l~~~l~~~~~~~~v~~~d~~~~~~~~~~-------~d~~~~~~~~~~~~~~~~l~~~~~~~~~d~vi 77 (331)
T 2pn1_A 5 PHLLITSAGRRAKLVEYFVKEFKTGRVSTADCSPLASALYM-------ADQHYIVPKIDEVEYIDHLLTLCQDEGVTALL 77 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCCSSEEEEEESCTTCGGGGG-------SSSEEECCCTTSTTHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEecCCchHHHHHHHHHhcCCCEEEEEeCCCcchhHHh-------hhceecCCCCCChhHHHHHHHHHHHcCCCEEE
Confidence 456666543 577777765 6 99999988 77776666 66654433 333 33443 677776
Q ss_pred eccccC---CHHHHHHHHHCCC-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHH--HHhCCCEEEe
Q 042131 81 VEIEHV---DVAIMEKLEQQGV-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAG--KQFGYPLMVK 154 (201)
Q Consensus 81 ~~~~~i---~~~~~~~l~~~g~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~--~~~~~P~VvK 154 (201)
...+.- .....+.++..|+ .+++++++++++.||..++++|+++|||+|++.. +.+++.+++ ++++||+|+|
T Consensus 78 ~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P~vvK 155 (331)
T 2pn1_A 78 TLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEVQLPVFVK 155 (331)
T ss_dssp ESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSSCSCEEEE
T ss_pred eCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccCCCCEEEE
Confidence 433321 1123456777788 4689999999999999999999999999999875 566666665 4689999999
Q ss_pred ecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 155 SKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 155 p~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|..|+ +|+||+++++.+|+.++++. ...+++||||+|.||+|
T Consensus 156 p~~g~-g~~gv~~v~~~~el~~~~~~----~~~~lvee~i~G~e~~v 197 (331)
T 2pn1_A 156 PRNGS-ASIEVRRVETVEEVEQLFSK----NTDLIVQELLVGQELGV 197 (331)
T ss_dssp ESBC----------------------------CEEEEECCCSEEEEE
T ss_pred eCCCC-CCCCeEEeCCHHHHHHHHHh----CCCeEEEecCCCcEEEE
Confidence 99976 89999999999999887754 23499999999999985
No 44
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.87 E-value=1.1e-21 Score=163.67 Aligned_cols=183 Identities=12% Similarity=0.066 Sum_probs=130.6
Q ss_pred chhhhhccccccccc-ccCCCeEEEECC-CCCccc---------------ccC-CC-CCCCCCCccccCCCCHhhhhcCC
Q 042131 17 PTIHCRRGRRFPVDR-PLKDSRLWELDS-GAIAAR---------------GIS-PP-PLLDSARPEVHNFELPVAVVACG 77 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa-~~~G~~v~~~~~-~~~~~~---------------~~~-~~-~~~~a~~~~~~~~~d~~~l~~~d 77 (201)
..+.+.+|+.+++++ ++.||+++.++. .+..+. .+. .. +.. ..........-...+..+|
T Consensus 17 ~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D 95 (377)
T 1ehi_A 17 HDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTV-DASDPLARIHALKSAGDFD 95 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSC-CTTCTTCTTGGGGTTCCCS
T ss_pred cceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhcccccccc-ccccccCcchhhccccCCC
Confidence 345566788999999 999999999875 322111 010 00 000 0000000000000122567
Q ss_pred eEEeccccC---CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHH----HHHHHHHhCC
Q 042131 78 VLTVEIEHV---DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLES----ARRAGKQFGY 149 (201)
Q Consensus 78 ~i~~~~~~i---~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~----~~~~~~~~~~ 149 (201)
++....... ...+...++..|++ ++++.+++.++.||..++++|+++|||+|++..+++.++ +..+.++++|
T Consensus 96 ~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~ 175 (377)
T 1ehi_A 96 IFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGN 175 (377)
T ss_dssp EEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCS
T ss_pred EEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhcCC
Confidence 765443222 22345677888995 479999999999999999999999999999999887754 6666778999
Q ss_pred CEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceeeC
Q 042131 150 PLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 150 P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~sv 201 (201)
|+||||..|+ +|.||+++++.+||..+++.+......+|||+||+| .||+|
T Consensus 176 PvvVKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v 227 (377)
T 1ehi_A 176 IVFVKAANQG-SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEV 227 (377)
T ss_dssp CEEEEESSCC-TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCSCEEEE
T ss_pred CEEEEeCCCC-CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCceEEE
Confidence 9999999976 899999999999999999887665567999999999 99975
No 45
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.86 E-value=5e-22 Score=163.99 Aligned_cols=182 Identities=18% Similarity=0.143 Sum_probs=128.7
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccCC-CCCCCCCCc----cccCCCCHh-------hhh--cCCeEEe
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISP-PPLLDSARP----EVHNFELPV-------AVV--ACGVLTV 81 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~-~~~~~a~~~----~~~~~~d~~-------~l~--~~d~i~~ 81 (201)
.-|.+.+|+.+++++++.||+|+.++. .+..+..... ......... +..+..+.. .+. .+|++..
T Consensus 17 ~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~ 96 (346)
T 3se7_A 17 HDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLP 96 (346)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEE
T ss_pred ccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEE
Confidence 456777899999999999999999986 4322211100 000000000 000000000 011 4566542
Q ss_pred cccc---CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecC
Q 042131 82 EIEH---VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKS 157 (201)
Q Consensus 82 ~~~~---i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~ 157 (201)
.... -...+...++..|++ ++++..++.++.||..++++|+++|||+|++..+++.+ ..+.++++||+||||..
T Consensus 97 ~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~~~~~~lg~PvvvKP~~ 174 (346)
T 3se7_A 97 VLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADE--KIPTDQLTYPVFVKPAR 174 (346)
T ss_dssp CCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTS--CCCTTTCCSSEEEEESS
T ss_pred ccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcH--HHHHHhcCCCEEEEeCC
Confidence 2211 122455677888995 58889999999999999999999999999999887765 23456789999999999
Q ss_pred CCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 158 LAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 158 g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|+ +|.||+++++.+|+..+++.+......+|||+||+|.||+|
T Consensus 175 ~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~E~~v 217 (346)
T 3se7_A 175 SG-SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVIGTEIGC 217 (346)
T ss_dssp CC-TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCCSEEEEE
T ss_pred CC-CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcCCEEEEE
Confidence 76 89999999999999999998876667799999999999985
No 46
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.86 E-value=9.3e-22 Score=164.43 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=122.6
Q ss_pred hhhhcccccccccccCCCeEEEECC-CCCccccc-CCCC-CCCCCCccccCCC------CHhhh-hcCCeEEecccc---
Q 042131 19 IHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGI-SPPP-LLDSARPEVHNFE------LPVAV-VACGVLTVEIEH--- 85 (201)
Q Consensus 19 i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~-~~~~-~~~a~~~~~~~~~------d~~~l-~~~d~i~~~~~~--- 85 (201)
|.+.+|+.+++++++.||+|+.++. .+..+... .... ....+........ +...+ ...|++......
T Consensus 53 vSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~G 132 (383)
T 3k3p_A 53 VSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMG 132 (383)
T ss_dssp HHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGCCTTCEEEEECCSTTT
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccccccCCCEEEEcCCCCCc
Confidence 4445778999999999999999886 33222110 0000 0000000000000 00001 145655422211
Q ss_pred CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCC-CCCCCccccCCH----HHHHHHHHHhCCCEEEeecCCC
Q 042131 86 VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHG-IPLPEFMEVNDL----ESARRAGKQFGYPLMVKSKSLA 159 (201)
Q Consensus 86 i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~g-ip~p~~~~~~~~----~~~~~~~~~~~~P~VvKp~~g~ 159 (201)
-+..+...++..|++ ++++..++.++.||..++++|+++| ||+|++..+++. +++.++.++++||+||||..|+
T Consensus 133 Edg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg 212 (383)
T 3k3p_A 133 EDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMG 212 (383)
T ss_dssp SSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCCSSEEEEECC--
T ss_pred chHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHhcCCCEEEEeCCCC
Confidence 123455678889995 6899999999999999999999999 999999988765 4666778899999999999976
Q ss_pred CCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 160 YDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 160 ~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+|.||+++++.+|+.++++.+......+|||+||+|.||+|
T Consensus 213 -ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~G~E~~v 253 (383)
T 3k3p_A 213 -SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEV 253 (383)
T ss_dssp -----CEEESSHHHHHHHHHHHHHHCSEEEEEECCCSEEEEE
T ss_pred -CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCeEEEE
Confidence 89999999999999999987654455699999999999985
No 47
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.85 E-value=9.3e-22 Score=162.14 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=127.7
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccC-CCCCCC--C-CCccccCCCCHhh-h---------hcCCeEEe
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGIS-PPPLLD--S-ARPEVHNFELPVA-V---------VACGVLTV 81 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~-~~~~~~--a-~~~~~~~~~d~~~-l---------~~~d~i~~ 81 (201)
..+.+.+|+.+++++++.||+++.++. .+..+.... ..+... . +..+.....+... + ..+|++..
T Consensus 17 ~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~ 96 (343)
T 1e4e_A 17 HDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFS 96 (343)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEETTEEEEEECSEEEE
T ss_pred cchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccccccceeecccccccccCCEEEE
Confidence 345556788899999999999999876 433221110 000000 0 0000011011011 1 15666653
Q ss_pred ccccC---CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecC
Q 042131 82 EIEHV---DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKS 157 (201)
Q Consensus 82 ~~~~i---~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~ 157 (201)
..... +..+...++..|++ ++++.+++.++.||..++++|+++|||+|++..+++.+++.. ++++||+||||..
T Consensus 97 ~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~--~~~~~PvvvKP~~ 174 (343)
T 1e4e_A 97 ALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVA--ATFTYPVFVKPAR 174 (343)
T ss_dssp CCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTTCCCCG--GGSCSCEEEEESS
T ss_pred eCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEechhhhhh--hccCCCEEEEeCC
Confidence 32211 22345567788885 578999999999999999999999999999998887765432 6789999999999
Q ss_pred CCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 158 LAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 158 g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|+ +|.||+++++.+|+..+++.+......+|||+||+|.||+|
T Consensus 175 ~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G~E~~v 217 (343)
T 1e4e_A 175 SG-SSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGC 217 (343)
T ss_dssp CC-TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCCSEEEEE
T ss_pred CC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcCCeEEEE
Confidence 76 89999999999999999988765556799999999999985
No 48
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.85 E-value=4.2e-22 Score=158.92 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=114.6
Q ss_pred cccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCC-eEEeccc-cCCHHHHHHHHHCCC
Q 042131 23 RGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACG-VLTVEIE-HVDVAIMEKLEQQGV 99 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d-~i~~~~~-~i~~~~~~~l~~~g~ 99 (201)
++++++++++++|+++++++. .... .+ ++.. ..+...| ++..... .....+...++..|+
T Consensus 12 ~~~~~~~a~~~~G~~v~~~~~~~~~~--~~-------~~~~--------~~~~~~d~~~~~~~~~~~~~~~~~~l~~~g~ 74 (280)
T 1uc8_A 12 DERMLFERAEALGLPYKKVYVPALPM--VL-------GERP--------KELEGVTVALERCVSQSRGLAAARYLTALGI 74 (280)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGGGCCE--ET-------TBCC--------GGGTTCCEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcEEEEehhhcee--ec-------cCCC--------cccCCCCEEEECCccchhhHHHHHHHHHCCC
Confidence 567899999999999999987 4332 23 2211 1111445 3321111 112345567888888
Q ss_pred cccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHH
Q 042131 100 DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAIT 179 (201)
Q Consensus 100 ~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~ 179 (201)
++.++++++..+.||..++++|+++|+|+|++..+++.+++.+++++++||+|+||..|+ +|+||+++++.+|+..+++
T Consensus 75 ~~~~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~-~~~gv~~v~~~~el~~~~~ 153 (280)
T 1uc8_A 75 PVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGS-WGRLLAXXXXXXXXXXXXX 153 (280)
T ss_dssp CEESCHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEECSBCC-BCSHHHHHHHHHC------
T ss_pred ceeCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhCCCEEEEECCCC-Ccccceecccccccchhhh
Confidence 777889999999999999999999999999999999999999988999999999999976 8999999999999998887
Q ss_pred Hh--cC--CCCceEEeecCCCc
Q 042131 180 AL--GG--FDRSLYIEKWAPFV 197 (201)
Q Consensus 180 ~~--~~--~~~~~lvEe~i~G~ 197 (201)
.+ .. ....+++||||+|+
T Consensus 154 ~~~~~~~~~~~~~lvqe~i~~~ 175 (280)
T 1uc8_A 154 XKEVLGGFQHQLFYIQEYVEKP 175 (280)
T ss_dssp ------CTTTTCEEEEECCCCS
T ss_pred hHhhhcccCCCcEEEEeccCCC
Confidence 65 22 14569999999973
No 49
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.85 E-value=3e-22 Score=186.12 Aligned_cols=177 Identities=15% Similarity=0.210 Sum_probs=132.8
Q ss_pred chhhhhcc----cccccccccCCCeEEEECC-CCCccc--ccCCCCCCCCCCccc--------cCCCCHhhhh------c
Q 042131 17 PTIHCRRG----RRFPVDRPLKDSRLWELDS-GAIAAR--GISPPPLLDSARPEV--------HNFELPVAVV------A 75 (201)
Q Consensus 17 ~~i~~~~g----~~l~~aa~~~G~~v~~~~~-~~~~~~--~~~~~~~~~a~~~~~--------~~~~d~~~l~------~ 75 (201)
.+|++.++ .+++++|+++|++++++++ .+.... .. +|+.+. .+|.|.+.+. .
T Consensus 5 kkVLIagrGeia~riiraa~elGi~vVav~s~~d~~s~~~~~-------ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~ 77 (1150)
T 3hbl_A 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYK-------ADESYLVGSDLGPAESYLNIERIIDVAKQAN 77 (1150)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGT-------SSEEEECCTTSCTTGGGTCHHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCcccchhhhh-------cceeeecCCCCCccccccCHHHHHHHHHHhC
Confidence 45565432 4888999999999999987 544433 34 555442 2456666665 6
Q ss_pred CCeEEeccc--cCCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCC
Q 042131 76 CGVLTVEIE--HVDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYP 150 (201)
Q Consensus 76 ~d~i~~~~~--~i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P 150 (201)
+|++....+ .-...+++.+++.|++ +++++++++++.||..++++++++|||+|++. .+++.+++.++++++|||
T Consensus 78 ~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyP 157 (1150)
T 3hbl_A 78 VDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFP 157 (1150)
T ss_dssp CSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSS
T ss_pred CCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCC
Confidence 787764432 2235677889999984 58999999999999999999999999999988 788999888888999999
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCC------CCceEEeecCCC-ceeeC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITALGGF------DRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~sv 201 (201)
+||||..|+ ||+|++++++.+|+.++++..... .+.+++|+||+| .+|+|
T Consensus 158 vVVKP~~Gg-Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV 214 (1150)
T 3hbl_A 158 LMIKATSGG-GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEV 214 (1150)
T ss_dssp EEEECCC--------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEE
T ss_pred EEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEE
Confidence 999999976 999999999999999999865421 356999999999 57764
No 50
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.85 E-value=2.3e-22 Score=187.53 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=85.5
Q ss_pred chhhhhc----ccccccccccCCCeEEEECC-CC--CcccccCCCCCCCCCCccc-------cCCCCHhhhh------cC
Q 042131 17 PTIHCRR----GRRFPVDRPLKDSRLWELDS-GA--IAARGISPPPLLDSARPEV-------HNFELPVAVV------AC 76 (201)
Q Consensus 17 ~~i~~~~----g~~l~~aa~~~G~~v~~~~~-~~--~~~~~~~~~~~~~a~~~~~-------~~~~d~~~l~------~~ 76 (201)
.+|++.+ +++++++|+++|++++++++ .+ .+..++ +|+.+. .+|.|.+.+. .+
T Consensus 32 kkILI~grGeia~~iiraar~lGi~vVaV~s~~d~~a~~~~~-------ADe~~~i~p~~~~~syld~~~Il~~a~~~~i 104 (1236)
T 3va7_A 32 ETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTD-------ADFSVALHGRTAAETYLDIDKIINAAKKTGA 104 (1236)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHTCEEEEEECSGGGGCHHHHH-------SSEEEECCCSSTTTTTTCHHHHHHHHHHTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCEEEEEEcCCCcCchhhhh-------CCEEEEeCCCcccccccCHHHHHHHHHHhCC
Confidence 4677663 36899999999999998866 33 344455 565443 3677777776 67
Q ss_pred CeEEeccccC--CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHHhCCCEE
Q 042131 77 GVLTVEIEHV--DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQFGYPLM 152 (201)
Q Consensus 77 d~i~~~~~~i--~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~~~~P~V 152 (201)
|++....... ...+++.+++.|++ ++++.++++++.||..++++|+++|||+|+ +..+++.+++.+++++++||+|
T Consensus 105 DaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~iGyPvV 184 (1236)
T 3va7_A 105 QAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKLEYPVM 184 (1236)
T ss_dssp SEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-----------------------
T ss_pred CEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHcCCCEE
Confidence 8776433222 25677888999995 589999999999999999999999999988 5678899999999999999999
Q ss_pred EeecCCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCCC-ceeeC
Q 042131 153 VKSKSLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 153 vKp~~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~G-~e~sv 201 (201)
|||..|+ ||+||++++|.+|+.++++.+.. ....++|||||+| .|++|
T Consensus 185 VKP~~Gg-GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV 239 (1236)
T 3va7_A 185 VKSTAGG-GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEI 239 (1236)
T ss_dssp -------------------------------------------------CCEEEEE
T ss_pred EEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEE
Confidence 9999976 99999999999999999876432 2345999999999 88875
No 51
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.85 E-value=6.7e-21 Score=158.71 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=127.0
Q ss_pred chhhhhcccccccccccCCCeEEEECC-CCCcccccCCCCC-CCC----------CCc--cccC--C------CCHhhhh
Q 042131 17 PTIHCRRGRRFPVDRPLKDSRLWELDS-GAIAARGISPPPL-LDS----------ARP--EVHN--F------ELPVAVV 74 (201)
Q Consensus 17 ~~i~~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~-~~a----------~~~--~~~~--~------~d~~~l~ 74 (201)
--|.+.+|+.+++++.+.||+|+.++. .+-.+........ ... ... +... . .+...+.
T Consensus 18 ~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (372)
T 3tqt_A 18 HEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRY 97 (372)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECCHHHHHHSCHHHHHHHTCSEEEEECTTCSSCCEEEC----CEE
T ss_pred cHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEeccchhhhhccccccccccccccceeecccccccceeecccccccc
Confidence 456677889999999999999998876 3321111000000 000 000 0000 0 0000112
Q ss_pred cCCeEEecccc---CCHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHH----HHHHHHH
Q 042131 75 ACGVLTVEIEH---VDVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLES----ARRAGKQ 146 (201)
Q Consensus 75 ~~d~i~~~~~~---i~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~----~~~~~~~ 146 (201)
.+|++...... -+..+...|+..|++ ++++..++.++.||..++++|+++|||+|++..+++.++ +..+.++
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~ 177 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDR 177 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHH
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHh
Confidence 45665422211 122455678889994 689999999999999999999999999999998877653 4566788
Q ss_pred hCCC-EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 147 FGYP-LMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 147 ~~~P-~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
++|| +||||..|+ +|.||+++++.+||..+++........+|||+||+|+||+|
T Consensus 178 lg~P~vvVKP~~gg-ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G~E~~v 232 (372)
T 3tqt_A 178 WGTSELFVKAVSLG-SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIEC 232 (372)
T ss_dssp C---CEEEEESSCC-SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCCSEEEEE
T ss_pred cCCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCCCEEEEE
Confidence 9999 999999976 88999999999999999988776667799999999999975
No 52
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.85 E-value=7.7e-21 Score=165.87 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=133.7
Q ss_pred Cchhhhhcc----cccccccccCCC---------eEEEECC-----CCCcccccCCCCCCCCCCcccc-------CCCCH
Q 042131 16 SPTIHCRRG----RRFPVDRPLKDS---------RLWELDS-----GAIAARGISPPPLLDSARPEVH-------NFELP 70 (201)
Q Consensus 16 ~~~i~~~~g----~~l~~aa~~~G~---------~v~~~~~-----~~~~~~~~~~~~~~~a~~~~~~-------~~~d~ 70 (201)
.++|++.++ .+++++++++|| +++++.+ .+.+..++ +|+.+.. ++.|.
T Consensus 47 ~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~-------aD~~~~ip~~~~~~~y~d~ 119 (554)
T 1w96_A 47 ISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRM-------ADQYIEVPGGTNNNNYANV 119 (554)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHH-------SSEEEECCCSSGGGTTTCH
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEEEEecccccccCChhhhh-------CCEEEEcCCCCccccccCH
Confidence 346666532 467889999855 4455433 23344456 5665443 56677
Q ss_pred hhhh------cCCeEEecccc--CCHHHHHHHHHCC--C-cccccHHHHHHHhCHHHHHHHHhhCCCCCCCcccc-----
Q 042131 71 VAVV------ACGVLTVEIEH--VDVAIMEKLEQQG--V-DCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEV----- 134 (201)
Q Consensus 71 ~~l~------~~d~i~~~~~~--i~~~~~~~l~~~g--~-~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~----- 134 (201)
+.+. .+|.+...... -...+...+++.| + .++++.++++++.||..++++|+++|||+|++..+
T Consensus 120 ~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~ 199 (554)
T 1w96_A 120 DLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTV 199 (554)
T ss_dssp HHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCC
T ss_pred HHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccc
Confidence 7776 57877643311 1123455678888 7 56899999999999999999999999999998764
Q ss_pred ---------------------CCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC--CCCceEEe
Q 042131 135 ---------------------NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG--FDRSLYIE 191 (201)
Q Consensus 135 ---------------------~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~--~~~~~lvE 191 (201)
++.+++.+++++++||+||||..|+ ||+||+++++.+|+..+++.+.. ....++||
T Consensus 200 ~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvE 278 (554)
T 1w96_A 200 HVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGG-GGKGIRQVEREEDFIALYHQAANEIPGSPIFIM 278 (554)
T ss_dssp EECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCC-TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred cccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHhhccCCCEEEE
Confidence 7889998888999999999999976 99999999999999999987642 23459999
Q ss_pred ecCCC-ceeeC
Q 042131 192 KWAPF-VKVNV 201 (201)
Q Consensus 192 e~i~G-~e~sv 201 (201)
|||+| .|++|
T Consensus 279 e~i~g~~e~sv 289 (554)
T 1w96_A 279 KLAGRARHLEV 289 (554)
T ss_dssp ECCCSCEEEEE
T ss_pred EecCCCcEEEE
Confidence 99996 68875
No 53
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.84 E-value=2.1e-21 Score=180.81 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=81.7
Q ss_pred cccccccccCCCeEEEECC-CCCc--ccccCCCCCCCCCCcccc--------------CCCCHhhhh------cCCeEEe
Q 042131 25 RRFPVDRPLKDSRLWELDS-GAIA--ARGISPPPLLDSARPEVH--------------NFELPVAVV------ACGVLTV 81 (201)
Q Consensus 25 ~~l~~aa~~~G~~v~~~~~-~~~~--~~~~~~~~~~~a~~~~~~--------------~~~d~~~l~------~~d~i~~ 81 (201)
.+++++|+++|++++++++ .+.+ ..+. +|..+.. +|.|.+.+. .+|++..
T Consensus 27 ~riiraa~elGi~vvav~s~~d~~a~~~~~-------ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~p 99 (1165)
T 2qf7_A 27 IRVFRAANELGIKTVAIWAEEDKLALHRFK-------ADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHP 99 (1165)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGTTCHHHHS-------SSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHcCCEEEEEECCCcccchhHHh-------CCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEE
Confidence 5888999999999999998 5543 2344 5554322 233555555 6787765
Q ss_pred ccccC--CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeec
Q 042131 82 EIEHV--DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSK 156 (201)
Q Consensus 82 ~~~~i--~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~ 156 (201)
..+.. ...+++.+++.|++ +++++++++++.||..++++|+++|||+|++. .+++.+++.+++++++||+||||.
T Consensus 100 g~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~igyPvVVKp~ 179 (1165)
T 2qf7_A 100 GYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKAS 179 (1165)
T ss_dssp CSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC-----------------------------
T ss_pred CCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcCCCEEEEeC
Confidence 43322 24677888899984 58999999999999999999999999999988 688999998888999999999999
Q ss_pred CCCCCCCCeEEcCCHHHHHHHHHHhcC------CCCceEEeecCC-CceeeC
Q 042131 157 SLAYDGRGNAVAKSEEELSSAITALGG------FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 157 ~g~~~g~gv~~~~~~~el~~~~~~~~~------~~~~~lvEe~i~-G~e~sv 201 (201)
.|+ ||+||+++++.+|+.++++.+.. ....++||+||+ |.|++|
T Consensus 180 ~g~-GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV 230 (1165)
T 2qf7_A 180 WGG-GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVES 230 (1165)
T ss_dssp -----------------------------------------CCCSSEEEEEE
T ss_pred CCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEE
Confidence 976 99999999999999998876532 134699999999 578875
No 54
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1e-20 Score=157.75 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=97.5
Q ss_pred HHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHH--HHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 89 AIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLES--ARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 89 ~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~--~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
.+...++..|++ ++++.+++.++.||..++++|+++|||+|++..+++.++ .....++++||+||||..|+ +|.||
T Consensus 126 ~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg-ss~GV 204 (373)
T 3lwb_A 126 TIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGG-SSIGV 204 (373)
T ss_dssp HHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBCS-TTTTC
T ss_pred HHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhcCCCEEEEeCCCC-CCCCE
Confidence 455677888984 588999999999999999999999999999998887664 13346789999999999976 89999
Q ss_pred EEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 166 AVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+++++.+||..+++.+......+|||+||+|.||+|
T Consensus 205 ~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G~E~~v 240 (373)
T 3lwb_A 205 SRVSSWDQLPAAVARARRHDPKVIVEAAISGRELEC 240 (373)
T ss_dssp EEECSGGGHHHHHHHHHTTCSSEEEEECCEEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHhcCCCEEEeCCCCCeEEEE
Confidence 999999999999988776666799999999999975
No 55
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1e-19 Score=155.91 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=106.7
Q ss_pred cCCeEEeccccCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEe
Q 042131 75 ACGVLTVEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVK 154 (201)
Q Consensus 75 ~~d~i~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvK 154 (201)
.+|.+....+.....+...+++.|++ ++++++++++.||..++++|+++|+|+|++..+++.+++.++++++|||+|||
T Consensus 102 ~id~Vip~sE~~l~~~a~~~e~~Gi~-g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg~PvVVK 180 (474)
T 3vmm_A 102 GADAITTNNELFIAPMAKACERLGLR-GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGTPLILK 180 (474)
T ss_dssp TCSEEEESCGGGHHHHHHHHHHTTCC-CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSCSSEEEE
T ss_pred CCCEEEECCcccHHHHHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCCCEEEE
Confidence 67877665555445567788889987 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCeEEcCCHHHHHHHHHHhc------------CCCCceEEeecCCCce
Q 042131 155 SKSLAYDGRGNAVAKSEEELSSAITALG------------GFDRSLYIEKWAPFVK 198 (201)
Q Consensus 155 p~~g~~~g~gv~~~~~~~el~~~~~~~~------------~~~~~~lvEe~i~G~e 198 (201)
|..|+ ||+|++++++.+|+.++++... ...+.++|||||+|.|
T Consensus 181 P~~g~-gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e 235 (474)
T 3vmm_A 181 PTYLA-SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEY 235 (474)
T ss_dssp ESSCC-TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCH
T ss_pred ECCCC-cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCce
Confidence 99976 9999999999999999987642 1235699999999998
No 56
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-21 Score=133.79 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=81.3
Q ss_pred HHHhCHHHHHHHHhhCCCCCCCcc--ccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc----
Q 042131 109 RIIQDKYIQKVHFSPHGIPLPEFM--EVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG---- 182 (201)
Q Consensus 109 ~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~---- 182 (201)
.++.||..++++|+++|||+|++. .+++.+++..++++++||+|+||..|+ +|+||++++|.+|+..++..+.
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~-~~~gv~~v~~~~el~~~~~~~~~~~~ 82 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGG-GGKGMRIAWDDEETRDGFRLSSQEAA 82 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSC-CTTTCEEESSHHHHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998 889999999888999999999999976 8999999999999999987652
Q ss_pred --CCCCceEEeecCCCc-eeeC
Q 042131 183 --GFDRSLYIEKWAPFV-KVNV 201 (201)
Q Consensus 183 --~~~~~~lvEe~i~G~-e~sv 201 (201)
.....++||+||+|. |++|
T Consensus 83 ~~~~~~~~lvee~i~g~~E~~v 104 (108)
T 2cqy_A 83 SSFGDDRLLIEKFIDNPRHISG 104 (108)
T ss_dssp HHTSSCCEEEEECCSSSSCCCS
T ss_pred hhcCCCcEEEeeccCCCcEEEE
Confidence 113459999999998 9876
No 57
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.79 E-value=3.1e-19 Score=148.46 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=96.8
Q ss_pred HHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH--HHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 89 AIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE--SARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 89 ~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~--~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
.+...++..|++ ++++.+++.++.||..++++|+++|||+|++..+++.+ ++.+ .++++||+||||..|+ +|.||
T Consensus 124 ~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~g~-ss~Gv 201 (367)
T 2pvp_A 124 KLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNFNFPFIVKPSNAG-SSLGV 201 (367)
T ss_dssp HHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCSCSCEEEEESSCC-TTTTC
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-HhccCCCEEEEECCCC-CCCCE
Confidence 355677888995 47999999999999999999999999999999888776 6655 6779999999999976 89999
Q ss_pred EEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceee
Q 042131 166 AVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVN 200 (201)
Q Consensus 166 ~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~s 200 (201)
+++++.+||..+++.+......++||+||+| .|||
T Consensus 202 ~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 202 NVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYN 237 (367)
T ss_dssp EEESSTTSHHHHHHHHTTTCSCEEEEECCTTCEEEE
T ss_pred EEECCHHHHHHHHHHHHhcCCcEEEEeCCCCCceee
Confidence 9999999999999887655567999999999 9965
No 58
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.76 E-value=1.1e-18 Score=142.77 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=99.6
Q ss_pred cCCeEEeccccC---CHHHHHHHHHCCCc-ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC
Q 042131 75 ACGVLTVEIEHV---DVAIMEKLEQQGVD-CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP 150 (201)
Q Consensus 75 ~~d~i~~~~~~i---~~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P 150 (201)
..|++....... ...+...++..|++ ++++.+++.++.||..++++|+++|||+|++..+++.++. .. +++||
T Consensus 76 ~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~--~~-~~g~P 152 (322)
T 2fb9_A 76 RYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPP--VV-PFDPP 152 (322)
T ss_dssp TCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCC--CC-CSCSC
T ss_pred CCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECchhh--hh-ccCCC
Confidence 567665333211 12345667888885 5788999999999999999999999999999988776531 22 68999
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCC-ceeeC
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPF-VKVNV 201 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~sv 201 (201)
+||||..|+ +|.||+++++.+|+..+++.+......+|||+||+| +||+|
T Consensus 153 vvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v 203 (322)
T 2fb9_A 153 FFVKPANTG-SSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEV 203 (322)
T ss_dssp EEEEETTCC-TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCSSCEEEEE
T ss_pred EEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCCCCeeEEE
Confidence 999999986 899999999999999999887765667999999999 99875
No 59
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.74 E-value=1.5e-18 Score=140.40 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=118.4
Q ss_pred hhcccccccccccCCCeEEEECC-CCCccc-ccCCCCCCCCC--Cc-cccC----CC-CH---hhhhcCCeEEeccccC-
Q 042131 21 CRRGRRFPVDRPLKDSRLWELDS-GAIAAR-GISPPPLLDSA--RP-EVHN----FE-LP---VAVVACGVLTVEIEHV- 86 (201)
Q Consensus 21 ~~~g~~l~~aa~~~G~~v~~~~~-~~~~~~-~~~~~~~~~a~--~~-~~~~----~~-d~---~~l~~~d~i~~~~~~i- 86 (201)
..++++++++++++|+++++++. ...... ... ++ .. +..+ +. +. ..+..+|++.......
T Consensus 18 ~~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~ 91 (316)
T 1gsa_A 18 KDSSFAMLLEAQRRGYELHYMEMGDLYLINGEAR------AHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPF 91 (316)
T ss_dssp TCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEE------EEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCC
T ss_pred CChHHHHHHHHHHCCCEEEEEchhHeEEECCeEE------EEEeeeEeccCcccceeccCccccccccCCEEEEecCCCC
Confidence 45678999999999999999987 321100 000 00 00 0000 00 00 0111567765432211
Q ss_pred ------CHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCC
Q 042131 87 ------DVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAY 160 (201)
Q Consensus 87 ------~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~ 160 (201)
...+++.++..|++++++++++.++.||..++++++ |+|++..+++.+++.+++++++ |+|+||..|+
T Consensus 92 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~~~-p~vvKP~~g~- 165 (316)
T 1gsa_A 92 DTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNKAQLKAFWEKHS-DIILKPLDGM- 165 (316)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTT----TSCCEEEESCHHHHHHHHHHHS-SEEEECSSCC-
T ss_pred chhhHHHHHHHHHHHHcCCeEecCHHHHHhhhhHHHHHhhhh----cCCCeEEeCCHHHHHHHHHHcC-CEEEEECCCC-
Confidence 124556677888888899999999999999999987 9999999999999998888899 9999999975
Q ss_pred CCCCeEEcC-CHHHHHHHHHHhcCC-CCceEEeecCCC
Q 042131 161 DGRGNAVAK-SEEELSSAITALGGF-DRSLYIEKWAPF 196 (201)
Q Consensus 161 ~g~gv~~~~-~~~el~~~~~~~~~~-~~~~lvEe~i~G 196 (201)
+|+||++++ +.+++..+++.+... ...+++|+||+|
T Consensus 166 ~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~ 203 (316)
T 1gsa_A 166 GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPA 203 (316)
T ss_dssp TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGG
T ss_pred CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCC
Confidence 999999998 888999888776532 356999999997
No 60
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.73 E-value=8.2e-18 Score=137.15 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=106.6
Q ss_pred ccccccccCCCeE--EEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccccCC---HHHHHHHHH--CC
Q 042131 26 RFPVDRPLKDSRL--WELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEHVD---VAIMEKLEQ--QG 98 (201)
Q Consensus 26 ~l~~aa~~~G~~v--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~i~---~~~~~~l~~--~g 98 (201)
+++++++++|+++ +.++. +.+ . ... . . ..|++........ ...++.+.. .|
T Consensus 26 ~l~~al~~~G~~v~~~~~d~-~~~---~-------~~~---~--~------~~d~v~~~~~~~~~~~~~~l~~~~~~~~g 83 (324)
T 1z2n_X 26 LFISTKNHTQFELNNIIFDV-TLS---T-------ELP---D--K------EPNAIITKRTHPVGKMADEMRKYEKDHPK 83 (324)
T ss_dssp HBSSCCSEEEEEETTEEEEE-EEE---S-------SCC---S--S------CCSEEEECCSCSSSHHHHHHHHHHHHCTT
T ss_pred hHHHHHHhcCcEEEEEEecC-CCC---c-------ccc---C--C------CceEEEEeccchHHHHHHHHHHHHHhCCC
Confidence 7899999999999 99885 111 1 000 0 0 1222221111111 233444444 67
Q ss_pred CcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHh--CCCEEEeecCCCCCC---CCeEEcCCHHH
Q 042131 99 VDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQF--GYPLMVKSKSLAYDG---RGNAVAKSEEE 173 (201)
Q Consensus 99 ~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~~P~VvKp~~g~~~g---~gv~~~~~~~e 173 (201)
++++++++++..+.||..++++|+++|||+|++..+++.+++.+++++. +||+|+||..| +|| +|++++++.++
T Consensus 84 ~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~g-~g~~~s~gv~~v~~~~~ 162 (324)
T 1z2n_X 84 VLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENA-QGTFNAHQMKIVLEQEG 162 (324)
T ss_dssp SEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTCSCSSEEEEESBC-SSSSGGGEEEEECSGGG
T ss_pred CeEeCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcCCCCCEEEeeCCC-CCCccceeeEEEeCHHH
Confidence 8788999999999999999999999999999999999999988888775 49999999996 488 89999999888
Q ss_pred HHHHHHHhcCCCCceEEeecCCC--ceee
Q 042131 174 LSSAITALGGFDRSLYIEKWAPF--VKVN 200 (201)
Q Consensus 174 l~~~~~~~~~~~~~~lvEe~i~G--~e~s 200 (201)
+.. ....+++|+||+| .+++
T Consensus 163 l~~-------~~~~~lvqe~i~~~g~~~~ 184 (324)
T 1z2n_X 163 IDD-------IHFPCLCQHYINHNNKIVK 184 (324)
T ss_dssp GTT-------CCSSEEEEECCCCTTCEEE
T ss_pred Hhh-------cCCCEEEEEccCCCCcEEE
Confidence 653 2345999999974 5554
No 61
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.73 E-value=4.2e-18 Score=152.53 Aligned_cols=143 Identities=17% Similarity=0.077 Sum_probs=109.2
Q ss_pred hcccccccccccCCCeEEEECCCCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEeccccCCHHHHHHHHHCCC-c
Q 042131 22 RRGRRFPVDRPLKDSRLWELDSGAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEHVDVAIMEKLEQQGV-D 100 (201)
Q Consensus 22 ~~g~~l~~aa~~~G~~v~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~i~~~~~~~l~~~g~-~ 100 (201)
.++++++.+|+++|+.+.++++.... ... ...+ ..+.+ +. |. .
T Consensus 428 ~S~~~l~~aA~~~Gi~v~vidp~~~l-~~l--------------~~~~-----~~~~~-~~---------------g~it 471 (750)
T 3ln6_A 428 LSTQLLLFDVIQKGVNFEVLDEQDQF-LKL--------------WHNS-----HIEYV-KN---------------GNMT 471 (750)
T ss_dssp HHHHHHHHHHHHHTCEEEESCSSSCE-EEE--------------EETT-----EEEEE-ET---------------TTBC
T ss_pred ccHHHHHHHHHhCCCCEEEECCCchH-hhh--------------ccCC-----CcEEE-ec---------------CCee
Confidence 47889999999999999999862211 111 0000 11111 00 11 2
Q ss_pred ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHH-HHhCCCEEEeecCCCCCCCCeEEcC---CHHHHHH
Q 042131 101 CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAG-KQFGYPLMVKSKSLAYDGRGNAVAK---SEEELSS 176 (201)
Q Consensus 101 ~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~-~~~~~P~VvKp~~g~~~g~gv~~~~---~~~el~~ 176 (201)
...+..++..+.||..++++|+++|||+|++..+++.+++.+++ +.+|||+||||..|+ +|+||++++ +.+++.+
T Consensus 472 g~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~G~-~G~GV~iv~~~~s~eel~~ 550 (750)
T 3ln6_A 472 SKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTN-FGLGISIFKTSANLASYEK 550 (750)
T ss_dssp TTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSSSSCEEEEETTCC-SSSSCEEESSCCCHHHHHH
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEEeCCCCHHHHHH
Confidence 23345567777899999999999999999999999998887777 678999999999976 899999998 9999999
Q ss_pred HHHHhcCCCCceEEeecCCCceeeC
Q 042131 177 AITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 177 ~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
+++.+......++|||||+|.||+|
T Consensus 551 a~~~~~~~~~~vlVEefI~G~E~~v 575 (750)
T 3ln6_A 551 AIDIAFTEDSAILVEEYIEGTEYRF 575 (750)
T ss_dssp HHHHHHHHCSEEEEEECCCSEEEEE
T ss_pred HHHHHHhhCCcEEEEeccCCCEEEE
Confidence 9987654445699999999999985
No 62
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.69 E-value=2.5e-17 Score=147.31 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=89.1
Q ss_pred ccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHH-HHhCCCEEEeecCCCCCCCCeEEc----CCHHHHH
Q 042131 101 CQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAG-KQFGYPLMVKSKSLAYDGRGNAVA----KSEEELS 175 (201)
Q Consensus 101 ~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~-~~~~~P~VvKp~~g~~~g~gv~~~----~~~~el~ 175 (201)
.+++..++.++.||..++++|+++|||+|++..+++.+++.+++ +.+|||+||||..|+ +|+||+++ ++.+++.
T Consensus 477 ~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~g~-~G~GV~iv~~~v~~~eel~ 555 (757)
T 3ln7_A 477 SHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTN-YGLGITIFQQGVQNREDFA 555 (757)
T ss_dssp SSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCHHHHHHGGGGSSSSCEEEEESSCS-TTTTCEECSSCCCCHHHHH
T ss_pred CCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCCEEEEeCCCC-CCCCeEEecCCCCCHHHHH
Confidence 46788999999999999999999999999999999999987766 678999999999976 89999999 8999999
Q ss_pred HHHHHhcCCCCceEEeecCCCceeeC
Q 042131 176 SAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 176 ~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
.+++.+......++|||||+|.|++|
T Consensus 556 ~al~~a~~~~~~vlVEefI~G~Ei~v 581 (757)
T 3ln7_A 556 KALEIAFREDKEVMVEDYLVGTEYRF 581 (757)
T ss_dssp HHHHHHHHHCSSEEEEECCCSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEcCCCcEEEE
Confidence 99876543344599999999999985
No 63
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.63 E-value=4.2e-16 Score=126.50 Aligned_cols=101 Identities=11% Similarity=0.200 Sum_probs=79.1
Q ss_pred cCCeEE---eccccCCHHHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCE
Q 042131 75 ACGVLT---VEIEHVDVAIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 75 ~~d~i~---~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~ 151 (201)
.+|++. .+.+.....+++.++..|..+++++++++++.||..+++++++ |||+|++.. ++++||+
T Consensus 69 ~~D~~~~i~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~-----------~~~~~P~ 136 (305)
T 3df7_A 69 KSDAFLIIAPEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL-----------RPLDCKF 136 (305)
T ss_dssp TCSEEEEECCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-----------SCCSSSE
T ss_pred hcCEEEEEccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-----------ccCCCCE
Confidence 667643 2333444566777777775679999999999999999999999 999999885 2578999
Q ss_pred EEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCceeeC
Q 042131 152 MVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKVNV 201 (201)
Q Consensus 152 VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~sv 201 (201)
|+||..|+ +|+||+++++ ....+++|+||+|.||+|
T Consensus 137 vvKP~~g~-gs~Gv~~v~~-------------~~~~~lvEe~I~G~e~sv 172 (305)
T 3df7_A 137 IIKPRTAC-AGEGIGFSDE-------------VPDGHIAQEFIEGINLSV 172 (305)
T ss_dssp EEEESSCC-----CBCCSS-------------CCTTEEEEECCCSEEEEE
T ss_pred EEEeCCCC-CCCCEEEEec-------------CCCCEEEEeccCCcEEEE
Confidence 99999975 8999999999 234499999999999986
No 64
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.63 E-value=4.3e-16 Score=122.16 Aligned_cols=90 Identities=23% Similarity=0.274 Sum_probs=78.3
Q ss_pred HhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCC-----CCCCCCeEE-cCCHHHHHHHHHHhcC-
Q 042131 111 IQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSL-----AYDGRGNAV-AKSEEELSSAITALGG- 183 (201)
Q Consensus 111 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g-----~~~g~gv~~-~~~~~el~~~~~~~~~- 183 (201)
..||..++++|+++|||+|++..+++.+++..+++++|||+|+||..+ + +|.||.+ ++|.+|+.++++.+..
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~-~~gGv~~~v~~~~el~~a~~~~~~~ 97 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKS-DAKVVMLNIKNEEELKKKWEEIHEN 97 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHH-HHTCEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhCCCEEEEEccCCCCcCC-ccCCEEEeCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999998999999999999986 3 4669998 7999999999876532
Q ss_pred --------CCCceEEeecCC-CceeeC
Q 042131 184 --------FDRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 184 --------~~~~~lvEe~i~-G~e~sv 201 (201)
..+.++||+||+ |.|++|
T Consensus 98 ~~~~~~~~~~~~vlVEe~i~~g~E~~v 124 (238)
T 1wr2_A 98 AKKYRPDAEILGVLVAPMLKPGREVII 124 (238)
T ss_dssp HHHHCTTCCCCEEEEEECCCCCEEEEE
T ss_pred hhhhCCCCccceEEEEECCCCCeEEEE
Confidence 125699999999 788874
No 65
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.56 E-value=3.3e-15 Score=123.13 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=78.4
Q ss_pred CCCcccccHHHHHHHhCHHHHHHHHhhC-------CCCCCCccccCCH--HHHHHHHH--HhCCCEEEeecCCC-CCCCC
Q 042131 97 QGVDCQPKASTIRIIQDKYIQKVHFSPH-------GIPLPEFMEVNDL--ESARRAGK--QFGYPLMVKSKSLA-YDGRG 164 (201)
Q Consensus 97 ~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~--~~~~~~~~--~~~~P~VvKp~~g~-~~g~g 164 (201)
.|+++.+++++++.+.||..+.++|.++ |||+|++.++.+. +++...++ .++||+|+||..|. ..+.|
T Consensus 100 ~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~ 179 (346)
T 2q7d_A 100 PETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHE 179 (346)
T ss_dssp TTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCE
T ss_pred CCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeee
Confidence 3788999999999999999999999987 9999999998763 45555543 57899999999742 12669
Q ss_pred eEEcCCHHHHHHHHHHhcCCCCceEEeecCC--CceeeC
Q 042131 165 NAVAKSEEELSSAITALGGFDRSLYIEKWAP--FVKVNV 201 (201)
Q Consensus 165 v~~~~~~~el~~~~~~~~~~~~~~lvEe~i~--G~e~sv 201 (201)
+.++++.++|... ..+ +++||||+ |.+|.|
T Consensus 180 v~~v~~~~~l~~~-----~~~--~lvQefI~~~G~dirv 211 (346)
T 2q7d_A 180 MAIVFNQEGLNAI-----QPP--CVVQNFINHNAVLYKV 211 (346)
T ss_dssp EEEECSGGGTTC-------CC--EEEEECCCCTTEEEEE
T ss_pred eEEecCHHHHHhc-----CCC--EEEEEeeCCCCeEEEE
Confidence 9999999887652 234 99999997 777654
No 66
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.54 E-value=2.5e-14 Score=115.83 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=82.8
Q ss_pred HHHHHHHHHCCCcccccHHHHHHHhCH----HHHHHHHhhCCC---CCCCccccCCHHHHHHHHHHhCCCEEEeecCCCC
Q 042131 88 VAIMEKLEQQGVDCQPKASTIRIIQDK----YIQKVHFSPHGI---PLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAY 160 (201)
Q Consensus 88 ~~~~~~l~~~g~~~~~~~~~~~~~~dK----~~~~~~l~~~gi---p~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~ 160 (201)
..++..++..|+++.++++++..|.|| ..+.++++++|+ |.+++....+..+ +.+.+|||+|+||..|+
T Consensus 88 r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~~---~~~~~g~PvVvK~~~Gs- 163 (309)
T 1i7n_A 88 RHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHRE---MLTLPTFPVVVKIGHAH- 163 (309)
T ss_dssp HHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGG---GSSCCCSSEEEEESSCS-
T ss_pred HHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChhh---hhhccCCCEEEEeCCCC-
Confidence 345677999999999999999999999 667778888888 8545443444433 34568999999999975
Q ss_pred CCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCC
Q 042131 161 DGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 161 ~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
.|+||.++++.+++++..+.+......+++||||+
T Consensus 164 ~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~ 198 (309)
T 1i7n_A 164 SGMGKVKVENHYDFQDIASVVALTQTYATAEPFID 198 (309)
T ss_dssp TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC
Confidence 89999999999999988876543233488999998
No 67
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=116.14 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=82.7
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCH----HHHHHHHhhCCC---CCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDK----YIQKVHFSPHGI---PLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK----~~~~~~l~~~gi---p~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
.++..++..|+++.++++++..|.|| ..+..+|.++|+ |.+++....+..+ +.+.+|||+|+||..|+ .
T Consensus 106 ~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~---~~~~~g~PvVvK~~~Gs-~ 181 (344)
T 2p0a_A 106 SLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKP---MVTAPHFPVVVKLGHAH-A 181 (344)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTT---CCCCSSSSEEEEESSCC-T
T ss_pred HHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchhh---hhhccCCCEEEEeCCCC-c
Confidence 45677999999999999999999999 677778888888 8544433344332 34568999999999975 8
Q ss_pred CCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCcee
Q 042131 162 GRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKV 199 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~ 199 (201)
|+||.++++.++++..++.+......+++||||+ ..+
T Consensus 182 G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~ 218 (344)
T 2p0a_A 182 GMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKY 218 (344)
T ss_dssp TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEE
T ss_pred eeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCc
Confidence 9999999999999988776542223488999998 444
No 68
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.48 E-value=1.1e-13 Score=115.46 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=82.9
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCH----HHHHHHHhhCCC---CCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDK----YIQKVHFSPHGI---PLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYD 161 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK----~~~~~~l~~~gi---p~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~ 161 (201)
.++..++..|+++.++++++..|.|| ..+..+|+++|+ |.+++....+..+ +++.++||+|+||..|+ .
T Consensus 201 ~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~~~~---~i~~~g~PvVvKp~~GS-~ 276 (422)
T 1pk8_A 201 SLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKE---MLSSTTYPVVVKMGHAH-S 276 (422)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGG---CCCCSSSSEEEEESSCC-T
T ss_pred HHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCchhh---hhhccCCCEEEEeCCCC-c
Confidence 45677999999999999999999999 566777788888 7444433344333 34568999999999975 8
Q ss_pred CCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCcee
Q 042131 162 GRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFVKV 199 (201)
Q Consensus 162 g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~e~ 199 (201)
|+||.++++.++++..++.+......+++||||+ ..+
T Consensus 277 G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~ 313 (422)
T 1pk8_A 277 GMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKY 313 (422)
T ss_dssp TTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEE
T ss_pred eeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCc
Confidence 9999999999999988876543234488999998 444
No 69
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.43 E-value=8.9e-13 Score=110.04 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=76.5
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCC-EEEeecCCC---CCCCCeEEcCCHHHHHHHHHHhcCC----
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYP-LMVKSKSLA---YDGRGNAVAKSEEELSSAITALGGF---- 184 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P-~VvKp~~g~---~~g~gv~~~~~~~el~~~~~~~~~~---- 184 (201)
+++..+++|+++|||+|++..+++.+++.++++++||| +||||..+. +.|.||++++|.+|+.++++.+...
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t 83 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVT 83 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECC
T ss_pred CHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhc
Confidence 68899999999999999999999999999999999999 999998742 1233999999999999999886431
Q ss_pred ---------CCceEEeecCC-CceeeC
Q 042131 185 ---------DRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 185 ---------~~~~lvEe~i~-G~e~sv 201 (201)
.+.++||+|++ |.|++|
T Consensus 84 ~q~g~~g~~~~~vlVEe~v~~~~E~~v 110 (388)
T 2nu8_B 84 YQTDANGQPVNQILVEAATDIAKELYL 110 (388)
T ss_dssp TTSCTTCEECCCEEEEECCCEEEEEEE
T ss_pred cccCCCCcccceEEEEEccccCCcEEE
Confidence 23699999999 788875
No 70
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=99.41 E-value=1.1e-12 Score=109.80 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=76.1
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC----CeEEcCCHHHHHHHHHHhcCC----
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR----GNAVAKSEEELSSAITALGGF---- 184 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~----gv~~~~~~~el~~~~~~~~~~---- 184 (201)
+.+..|++|+++|||+|++..+++.+++.++++++|||+|+|+... .+|+ ||++++|.+|+.++++++...
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~PvVvKa~~~-~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g 82 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVH-VGGRGKAGGVKLADTPQEAYEKAQAILGMNIKG 82 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTSCEEEEECCS-SSCTTTTTCEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCCCEEEEEccc-cCCCCccceEEEeCCHHHHHHHHHHhhhhhccC
Confidence 4567899999999999999999999999999999999999999873 2343 999999999999999887531
Q ss_pred --CCceEEeecCC-CceeeC
Q 042131 185 --DRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 185 --~~~~lvEe~i~-G~e~sv 201 (201)
.+.++||+|++ |.|++|
T Consensus 83 ~~~~~vlVEe~v~~g~El~v 102 (397)
T 3ufx_B 83 LTVKKVLVAEAVDIAKEYYA 102 (397)
T ss_dssp EECCCEEEEECCCEEEEEEE
T ss_pred CccceEEEEEeecCCeeEEE
Confidence 25699999999 888874
No 71
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.41 E-value=8.6e-13 Score=110.28 Aligned_cols=88 Identities=16% Similarity=0.282 Sum_probs=75.0
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCC-CEEEeec--CCCCCCCC---------eEEcCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGY-PLMVKSK--SLAYDGRG---------NAVAKSEEELSSAITA 180 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-P~VvKp~--~g~~~g~g---------v~~~~~~~el~~~~~~ 180 (201)
+++..+++|+++|||+|++..+++.+++.++++++|| |+|+||. .|| +|+| |++++|.+|+.++++.
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GG-rGKg~~ks~~~GGV~l~~s~~e~~~a~~~ 82 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGG-RGKGVFSSGLKGGVHLTKDPEVVGQLAKQ 82 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSC-GGGCEETTSCBCSEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCC-CccCccccCCcCCEEEECCHHHHHHHHHH
Confidence 5778899999999999999999999999999999999 8999995 433 4544 9999999999999987
Q ss_pred hcCC-------------CCceEEeecCC-CceeeC
Q 042131 181 LGGF-------------DRSLYIEKWAP-FVKVNV 201 (201)
Q Consensus 181 ~~~~-------------~~~~lvEe~i~-G~e~sv 201 (201)
+... .+.++||+|++ |.|++|
T Consensus 83 ~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v 117 (395)
T 2fp4_B 83 MIGYNLATKQTPKEGVKVNKVMVAEALDISRETYL 117 (395)
T ss_dssp TTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEE
T ss_pred HhhcchhhhccCCCCCccceEEEEEccCCceeEEE
Confidence 6421 13699999999 888875
No 72
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.69 E-value=5.6e-10 Score=89.15 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=79.8
Q ss_pred cCCeEE-eccccCCH-HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHH------------HH
Q 042131 75 ACGVLT-VEIEHVDV-AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLE------------SA 140 (201)
Q Consensus 75 ~~d~i~-~~~~~i~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~------------~~ 140 (201)
.||.+. +-..+.+. ..+.+.+..+..+.|+..+...+.||....++|+++|||+|++.+++... +.
T Consensus 57 ~~d~lisf~s~gfpl~kai~y~~lr~p~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~ 136 (330)
T 3t7a_A 57 LCDCLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDH 136 (330)
T ss_dssp CCSEEEECCCTTCCHHHHHHHHHHHCCEESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSE
T ss_pred cCCEEEEeccCCCcHHHHHHHHHHhCCceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchh
Confidence 667654 43344454 56677787788889999999999999999999999999999999877532 11
Q ss_pred HH-HHHHhCCCEEEeecCCC----------CCCCCe----EEcCCHHHHHHHHHHhcCCCCceEEeecCC
Q 042131 141 RR-AGKQFGYPLMVKSKSLA----------YDGRGN----AVAKSEEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 141 ~~-~~~~~~~P~VvKp~~g~----------~~g~gv----~~~~~~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
.+ ..+.+++|+|+||++|. ..|.|. +++.|.+.....-. .......+|+||||+
T Consensus 137 i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~-~vr~~~~~i~QEFI~ 205 (330)
T 3t7a_A 137 VEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPES-NVRKTGSYIYEEFMP 205 (330)
T ss_dssp EEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCC-SCCSSSCEEEEECCC
T ss_pred hhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhh-hhccCCcEEEEeccC
Confidence 11 12446799999999963 123343 34444332100000 112344599999997
No 73
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=98.03 E-value=8.4e-06 Score=68.50 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHHHHHHhhCCC---C---CCCccccCCH---HHHHHHHHHhC-CCEEEeecCCC-CCCC--CeEEcCCHHHHHHHHHHh
Q 042131 115 YIQKVHFSPHGI---P---LPEFMEVNDL---ESARRAGKQFG-YPLMVKSKSLA-YDGR--GNAVAKSEEELSSAITAL 181 (201)
Q Consensus 115 ~~~~~~l~~~gi---p---~p~~~~~~~~---~~~~~~~~~~~-~P~VvKp~~g~-~~g~--gv~~~~~~~el~~~~~~~ 181 (201)
+.-|++|.+|++ | .+++..+++. +++.+.++++| ||+|+|+..-. ..|+ ||.+..|.+|+.+++.++
T Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~m 88 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 455677888887 3 2346556554 77777788898 99999997621 0233 899999999999988775
Q ss_pred cCC----------CCceEEeecCCC---ceee
Q 042131 182 GGF----------DRSLYIEKWAPF---VKVN 200 (201)
Q Consensus 182 ~~~----------~~~~lvEe~i~G---~e~s 200 (201)
... -..++||++++. .||.
T Consensus 89 l~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~y 120 (425)
T 3mwd_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120 (425)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEE
T ss_pred HhhhhhccCCCceEEEEEEEecccCCCCceEE
Confidence 421 135999999974 6775
No 74
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=97.77 E-value=3.3e-05 Score=69.69 Aligned_cols=86 Identities=16% Similarity=0.063 Sum_probs=63.5
Q ss_pred HHHHHHHhhCCCC------CCCccccCCH---HHHHHHHHHhC-CCEEEeecCCCCCCC----CeEEcCCHHHHHHHHHH
Q 042131 115 YIQKVHFSPHGIP------LPEFMEVNDL---ESARRAGKQFG-YPLMVKSKSLAYDGR----GNAVAKSEEELSSAITA 180 (201)
Q Consensus 115 ~~~~~~l~~~gip------~p~~~~~~~~---~~~~~~~~~~~-~P~VvKp~~g~~~g~----gv~~~~~~~el~~~~~~ 180 (201)
+.-|++|.+|++| .+++..+++. +++.+.+++++ +|+|||+..- .+|| ||.+..|.+|+.+++.+
T Consensus 9 y~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~-~GgRGKaGGVkL~~s~eEa~~aa~~ 87 (829)
T 3pff_A 9 QTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQL-IKRRGKLGLVGVNLTLDGVKSWLKP 87 (829)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSS-CSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccc-ccCCCcCCeEEEECCHHHHHHHHHH
Confidence 4567888888888 4567666665 66666667787 9999999764 2444 89999999999998877
Q ss_pred hcCC----------CCceEEeecCCC---ceeeC
Q 042131 181 LGGF----------DRSLYIEKWAPF---VKVNV 201 (201)
Q Consensus 181 ~~~~----------~~~~lvEe~i~G---~e~sv 201 (201)
+... -..++||++++. .||.+
T Consensus 88 iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYv 121 (829)
T 3pff_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYV 121 (829)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEE
T ss_pred HHHHHHhhcCCCceEEEEEEEecccCCCccEEEE
Confidence 5321 135999999974 67753
No 75
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=96.92 E-value=0.0019 Score=53.37 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=33.0
Q ss_pred CCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCC
Q 042131 148 GYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAP 195 (201)
Q Consensus 148 ~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~ 195 (201)
+.++|+||..|+ .|+||+++++.+++.+.++.- . ..++||+||+
T Consensus 147 ~~~wI~KP~~~s-rG~GI~l~~~~~~i~~~~~~~-~--~~~VvQkYI~ 190 (380)
T 3tig_A 147 GNVWIAKSSSGA-KGEGILISSDATELLDFIDNQ-G--QVHVIQKYLE 190 (380)
T ss_dssp CCCEEEEESCC-----CCBCCSCSHHHHHHHHHH-T--SCEEEEECCS
T ss_pred CCeEEEeCCccC-CCCCEEEeCCHHHHHHHHhcc-C--CcEEEEeccc
Confidence 578999999975 899999999999988776542 2 3499999995
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.70 E-value=0.002 Score=54.77 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHH-------HHHH-hhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQ-------KVHF-SPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAY 160 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~-------~~~l-~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~ 160 (201)
.+++...+-++.+.|.+.+ .++.||..+ +.++ ++.=++..+|+.+.+.++...+.++.. -+|+||..| +
T Consensus 297 gLl~A~r~G~V~i~Na~gs-gv~~dKal~a~Lp~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~~l~-~lViKp~~g-~ 373 (474)
T 3n6x_A 297 GLLSVYRNGGVTLANAVGT-GVADDKDTYIYVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDNLA-ELVVKEVQG-S 373 (474)
T ss_dssp THHHHHHTTSCEEESCTTT-HHHHSTTTGGGHHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHSGG-GEEEEECCC-E
T ss_pred HHHHHHHcCCEEEeCCCch-hhhcCcHHHHHhHHHHHHhCCHhhhccCCCceecCCHHHHHHHHhchh-heEEEecCC-C
Confidence 3555555544544444433 345555322 2333 344456677888889988888887776 689999996 5
Q ss_pred CCCCeEE--cCCHHHHHHHHHHhcCCCCceEEeecCCCc
Q 042131 161 DGRGNAV--AKSEEELSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 161 ~g~gv~~--~~~~~el~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
+|.|+.+ --+.++.++..+++...+..+++|+++.-.
T Consensus 374 gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls 412 (474)
T 3n6x_A 374 GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALS 412 (474)
T ss_dssp -----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCC
T ss_pred CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCc
Confidence 8999986 557888888888776666779999999753
No 77
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=93.13 E-value=0.027 Score=49.43 Aligned_cols=98 Identities=15% Similarity=0.047 Sum_probs=61.7
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCC-CC---CccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIP-LP---EFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRG 164 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip-~p---~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~g 164 (201)
.+++.+.+.++.+++++.++- +.||..+.-+.+.+ | +| ++..-.+. ++ ..- ..|+||..| ..|.|
T Consensus 474 ~ll~~l~~~~v~iieP~~~~l-lsNKailalLw~l~--p~hp~LLpT~f~~~~-~l----~~~--~yV~KPi~g-ReG~n 542 (619)
T 2io8_A 474 RLIDVLLRPEVLVFEPLWTVI-PGNKAILPILWSLF--PHHRYLLDTDFTVND-EL----VKT--GYAVKPIAG-RCGSN 542 (619)
T ss_dssp CHHHHHTCTTCEEESCGGGGT-TTSTTHHHHHHHHS--TTCTTCCCEESSCCH-HH----HHH--CEEEEETTC-CTTTT
T ss_pred HHHHHHHhCCCEEECHHHHHH-hhhHHHHHHHHHhC--CCCCCCCCeeecCCc-cc----ccC--CEEEccCCC-CCCCC
Confidence 466767766677777777654 89999999777754 3 34 56543333 22 122 479999995 69999
Q ss_pred eEEcCCHHH-HHHHHHHhcCCCCceEEeecCCCcee
Q 042131 165 NAVAKSEEE-LSSAITALGGFDRSLYIEKWAPFVKV 199 (201)
Q Consensus 165 v~~~~~~~e-l~~~~~~~~~~~~~~lvEe~i~G~e~ 199 (201)
|.+.+...+ +.+....+. ...++.|+|++=+.+
T Consensus 543 V~i~~~~~~~~~~~~~~y~--~~~~IyQe~~~lp~~ 576 (619)
T 2io8_A 543 IDLVSHHEEVLDKTSGKFA--EQKNIYQQLWCLPKV 576 (619)
T ss_dssp CEEECTTSCEEEECCCTTT--TSCEEEEECCCCCEE
T ss_pred EEEEeCCChhHhhcccccc--CCCeEEEEecCCCCc
Confidence 999876221 111111111 244899999986654
No 78
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=76.20 E-value=1.5 Score=38.70 Aligned_cols=99 Identities=9% Similarity=-0.029 Sum_probs=40.1
Q ss_pred HHHHHHHC--CCcccccHHHHHHHhCHHHHHHHHhhC--CCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCe
Q 042131 90 IMEKLEQQ--GVDCQPKASTIRIIQDKYIQKVHFSPH--GIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGN 165 (201)
Q Consensus 90 ~~~~l~~~--g~~~~~~~~~~~~~~dK~~~~~~l~~~--gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv 165 (201)
+++.+.+. .+.+++++ -..+..||..+.-+=+.+ .-..+++..-.+. ++ ..- ..|+||..| +.|.||
T Consensus 488 ~~~~l~~~~~~v~~ieP~-wk~LlsNKaiLalLW~l~p~hp~LLpt~f~~~~-~~----~~~--~yV~KPi~g-ReG~nV 558 (652)
T 2vob_A 488 LCDLLLGDDWEILYFEPM-WKVIPSNKAILPMIYHNHPEHPAILKAEYELTD-EL----RKH--GYAKKPIVG-RVGSNV 558 (652)
T ss_dssp HHHHHSSSCTTSEEESCG-GGGTTTSTTHHHHHHHHCTTCTTBCCEESSCCH-HH----HHH--CEEEEECC--------
T ss_pred HHHHHhcCCCceEEeChh-HHHhhcCHHHHHHHHhcccCCCCCCchhhcCCC-cc----ccC--CeEeccCCC-CCCCCE
Confidence 44555544 44444444 345679999888554422 1122344422222 21 122 479999995 799999
Q ss_pred EEcCCHHHH-HHHHHHhcCCCCceEEeecCCCcee
Q 042131 166 AVAKSEEEL-SSAITALGGFDRSLYIEKWAPFVKV 199 (201)
Q Consensus 166 ~~~~~~~el-~~~~~~~~~~~~~~lvEe~i~G~e~ 199 (201)
.+.+...+. .+........ .+++|+|++=+++
T Consensus 559 ~I~~~~~~~~~~~~g~y~~~--~~IyQe~~~lp~f 591 (652)
T 2vob_A 559 IITSGDGVVHAESGGKYGKR--NMIYQQLFELKKQ 591 (652)
T ss_dssp ----------------------CEEEEECCC--CB
T ss_pred EEEcCCchhhhhcccccCCC--CeEEEecccCCcc
Confidence 998754332 2222222233 4999999985543
No 79
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=71.82 E-value=3.7 Score=33.84 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=32.8
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHH----HHHhc-----CCCCceEEeecCCCce
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSA----ITALG-----GFDRSLYIEKWAPFVK 198 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~----~~~~~-----~~~~~~lvEe~i~G~e 198 (201)
++||...|. -|.||..++|.+|+... -.++. ...+.+||||=|.--|
T Consensus 280 V~VKADaGT-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E 335 (432)
T 3k1t_A 280 VIVKADAGT-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFE 335 (432)
T ss_dssp EEEEEECGG-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCE
T ss_pred EEEEcCCCC-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhh
Confidence 699999976 59999999999997431 12221 1346799998665433
No 80
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=42.01 E-value=38 Score=26.96 Aligned_cols=35 Identities=3% Similarity=-0.025 Sum_probs=22.3
Q ss_pred CHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHHh
Q 042131 113 DKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQF 147 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~~ 147 (201)
......++|+++|+|+++ +..+.+.+++.++.+.+
T Consensus 233 t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 268 (318)
T 1b04_A 233 SHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEW 268 (318)
T ss_dssp BHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHH
Confidence 444555677777777754 45677777777665543
No 81
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=36.78 E-value=52 Score=26.18 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHH
Q 042131 114 KYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQ 146 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~ 146 (201)
....-++|+++|+++.+ +..+.+.+++.++.+.
T Consensus 232 ~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~ 265 (318)
T 3jsl_A 232 QSEALDELDKLGFTTNKNRARVNNIDGVLEYIEK 265 (318)
T ss_dssp HHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCCcceEeCCHHHHHHHHHH
Confidence 34444555666666533 4455666666555443
No 82
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=36.73 E-value=58 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHH
Q 042131 114 KYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQ 146 (201)
Q Consensus 114 K~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~ 146 (201)
....-++|+++|+|+++ +..+.+.+++.++.+.
T Consensus 238 ~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~ 271 (322)
T 3uq8_A 238 HYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRD 271 (322)
T ss_dssp HHHHHHHHHHTTCCCCTTCEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCcEEeCCHHHHHHHHHH
Confidence 34444555566666543 3445555555554443
No 83
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=36.67 E-value=1.7e+02 Score=23.60 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=51.8
Q ss_pred HHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCC--CccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE
Q 042131 90 IMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLP--EFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV 167 (201)
Q Consensus 90 ~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p--~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~ 167 (201)
+.+..++.|+.++.++ .|.... ++|.++|++.- .+.-+++..-++. +.+.+.|+++|--.
T Consensus 96 L~~~~~~~Gi~~~st~------~d~~sv-d~l~~~~v~~~KI~S~~~~n~~LL~~-va~~gkPviLstGm---------- 157 (349)
T 2wqp_A 96 LKEYVESKGMIFISTL------FSRAAA-LRLQRMDIPAYKIGSGECNNYPLIKL-VASFGKPIILSTGM---------- 157 (349)
T ss_dssp HHHHHHHTTCEEEEEE------CSHHHH-HHHHHHTCSCEEECGGGTTCHHHHHH-HHTTCSCEEEECTT----------
T ss_pred HHHHHHHhCCeEEEee------CCHHHH-HHHHhcCCCEEEECcccccCHHHHHH-HHhcCCeEEEECCC----------
Confidence 4466778898654433 222222 46666777663 3556677775554 45579999998621
Q ss_pred cCCHHHHHHHHHHhcCCCCceEEeecCCC
Q 042131 168 AKSEEELSSAITALGGFDRSLYIEKWAPF 196 (201)
Q Consensus 168 ~~~~~el~~~~~~~~~~~~~~lvEe~i~G 196 (201)
.+.+|+..+++.+.....++++-+.+.+
T Consensus 158 -at~~Ei~~Ave~i~~~G~~iiLlhc~s~ 185 (349)
T 2wqp_A 158 -NSIESIKKSVEIIREAGVPYALLHCTNI 185 (349)
T ss_dssp -CCHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 2788888888766421113555455543
No 84
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=35.29 E-value=1.7e+02 Score=23.48 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=52.4
Q ss_pred HHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCC--ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEE
Q 042131 90 IMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPE--FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAV 167 (201)
Q Consensus 90 ~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~--~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~ 167 (201)
+.+..++.|+.++.++ .|.... ++|.++|++.-+ +.-+++..-++. +.+.+.|+|+|.-.
T Consensus 83 L~~~~~~~Gi~~~st~------fD~~sv-d~l~~~~v~~~KI~S~~~~N~pLL~~-va~~gKPviLstGm---------- 144 (350)
T 3g8r_A 83 LVAEMKANGFKAICTP------FDEESV-DLIEAHGIEIIKIASCSFTDWPLLER-IARSDKPVVASTAG---------- 144 (350)
T ss_dssp HHHHHHHTTCEEEEEE------CSHHHH-HHHHHTTCCEEEECSSSTTCHHHHHH-HHTSCSCEEEECTT----------
T ss_pred HHHHHHHcCCcEEecc------CCHHHH-HHHHHcCCCEEEECcccccCHHHHHH-HHhhCCcEEEECCC----------
Confidence 4466778898654443 222222 467778777633 455667665554 45679999999621
Q ss_pred cCCHHHHHHHHHHhcCCCCceEEeecC
Q 042131 168 AKSEEELSSAITALGGFDRSLYIEKWA 194 (201)
Q Consensus 168 ~~~~~el~~~~~~~~~~~~~~lvEe~i 194 (201)
.+.+|+..+++.+.....++++-.+.
T Consensus 145 -stl~Ei~~Ave~i~~~g~~viLlhC~ 170 (350)
T 3g8r_A 145 -ARREDIDKVVSFMLHRGKDLTIMHCV 170 (350)
T ss_dssp -CCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred -CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 27888888888765322245554443
No 85
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=34.63 E-value=1.9e+02 Score=23.64 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCC--CccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeE
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLP--EFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNA 166 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p--~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~ 166 (201)
.+.+..++.|+.++.++ .|.... ++|.++|++.- .+.-+++..-++. +.+.+.|+++|--.
T Consensus 105 ~L~~~~~~~Gi~~~stp------fD~~sv-d~l~~~~vd~~KIgS~~~~N~pLL~~-va~~gKPViLStGm--------- 167 (385)
T 1vli_A 105 PLLDYCREKQVIFLSTV------CDEGSA-DLLQSTSPSAFKIASYEINHLPLLKY-VARLNRPMIFSTAG--------- 167 (385)
T ss_dssp HHHHHHHHTTCEEECBC------CSHHHH-HHHHTTCCSCEEECGGGTTCHHHHHH-HHTTCSCEEEECTT---------
T ss_pred HHHHHHHHcCCcEEEcc------CCHHHH-HHHHhcCCCEEEECcccccCHHHHHH-HHhcCCeEEEECCC---------
Confidence 45567788998665543 222222 56777887763 3556677775554 45579999999621
Q ss_pred EcCCHHHHHHHHHHhcC-CCCceEEeecCC
Q 042131 167 VAKSEEELSSAITALGG-FDRSLYIEKWAP 195 (201)
Q Consensus 167 ~~~~~~el~~~~~~~~~-~~~~~lvEe~i~ 195 (201)
.+.+|+..+++.+.. ...++++-+.+.
T Consensus 168 --aTl~Ei~~Ave~i~~~Gn~~iiLlhc~s 195 (385)
T 1vli_A 168 --AEISDVHEAWRTIRAEGNNQIAIMHCVA 195 (385)
T ss_dssp --CCHHHHHHHHHHHHTTTCCCEEEEEECS
T ss_pred --CCHHHHHHHHHHHHHCCCCcEEEEeccC
Confidence 278899888887753 223455544544
No 86
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=34.27 E-value=3.9 Score=33.89 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=18.5
Q ss_pred cccccccccccCCCeEEEECC
Q 042131 23 RGRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 23 ~g~~l~~aa~~~G~~v~~~~~ 43 (201)
-|+.+++.+++.|+.|+++|.
T Consensus 15 ~G~~va~~L~~~g~~vvvId~ 35 (413)
T 3l9w_A 15 FGQITGRLLLSSGVKMVVLDH 35 (413)
T ss_dssp HHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEEC
Confidence 357888999999999999997
No 87
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.94 E-value=56 Score=20.18 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC
Q 042131 136 DLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 136 ~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~ 183 (201)
+.+++.++..++|- +.++-..+...|.+.....+.++...+++.+.+
T Consensus 32 t~~~l~~~F~~~G~-v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 78 (97)
T 2e5j_A 32 RVSDLKRALRELGS-VPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG 78 (97)
T ss_dssp CHHHHHHHHHHTTC-CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhcCC-EEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC
Confidence 45666666666662 211222222245566678899999999988753
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=32.13 E-value=1e+02 Score=19.93 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHhCCC-EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC
Q 042131 136 DLESARRAGKQFGYP-LMVKSKSLAYDGRGNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 136 ~~~~~~~~~~~~~~P-~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~ 183 (201)
+.+++.++..++|.+ .-++-......|.|.....+.++...|++.+.+
T Consensus 41 te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng 89 (111)
T 2jvr_A 41 SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNN 89 (111)
T ss_dssp CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCC
Confidence 567888888888732 233332211256678888999999999988753
No 89
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=29.38 E-value=1.5e+02 Score=23.27 Aligned_cols=72 Identities=7% Similarity=0.068 Sum_probs=42.1
Q ss_pred HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcC
Q 042131 92 EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAK 169 (201)
Q Consensus 92 ~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~ 169 (201)
+..++.|+++..+. .|..... ++.++ ++. .....+.+.+-+++ +.+.+.|+++|--.+ -
T Consensus 106 ~~~~e~GLpv~Tev------~D~~~v~-~l~~~-vd~lkIgA~~~~n~~LLr~-va~~gkPVilK~Gms----------~ 166 (298)
T 3fs2_A 106 DLKKEYGFPVLTDI------HTEEQCA-AVAPV-VDVLQIPAFLCRQTDLLIA-AARTGRVVNVKKGQF----------L 166 (298)
T ss_dssp HHHHHHCCCEEEEC------CSHHHHH-HHTTT-CSEEEECGGGTTCHHHHHH-HHHTTSEEEEECCTT----------C
T ss_pred HHHHhcCCeEEEEe------CCHHHHH-HHHhh-CCEEEECccccCCHHHHHH-HHccCCcEEEeCCCC----------C
Confidence 34557787654432 2333332 44444 343 33556677775544 557899999997431 2
Q ss_pred CHHHHHHHHHHhc
Q 042131 170 SEEELSSAITALG 182 (201)
Q Consensus 170 ~~~el~~~~~~~~ 182 (201)
+.+|+..+++.+.
T Consensus 167 t~~ei~~ave~i~ 179 (298)
T 3fs2_A 167 APWDMKNVLAKIT 179 (298)
T ss_dssp CGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6677777777664
No 90
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=28.61 E-value=1.3e+02 Score=19.81 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=30.7
Q ss_pred HHHHHHHHHh---CCCEEEeecCCCCCCC--CeE---EcCCHHHHHHHHHHhcCCC
Q 042131 138 ESARRAGKQF---GYPLMVKSKSLAYDGR--GNA---VAKSEEELSSAITALGGFD 185 (201)
Q Consensus 138 ~~~~~~~~~~---~~P~VvKp~~g~~~g~--gv~---~~~~~~el~~~~~~~~~~~ 185 (201)
+++.+..++. +|..-.|+.. .|+ .|. .+.|.+++.+.++.+...+
T Consensus 51 ~~V~~vv~~~~p~d~~~~~r~Ss---~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~ 103 (109)
T 1rwu_A 51 DQVVEVVQRHAPGDYTPTVKPSS---KGNYHSVSITINATHIEQVETLYEELGKID 103 (109)
T ss_dssp HHHHHHHHHHSSSCCCEEEEESS---CSSEEEEEEEECCSSHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhCCCCCCceecCCC---CCeEEEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 3444555665 6777667754 566 333 7889999999999987544
No 91
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=28.07 E-value=1.4e+02 Score=21.09 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=41.6
Q ss_pred HHHHHHHHhhCCCCCC-Ccccc-CCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHh
Q 042131 114 KYIQKVHFSPHGIPLP-EFMEV-NDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITAL 181 (201)
Q Consensus 114 K~~~~~~l~~~gip~p-~~~~~-~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~ 181 (201)
+..++.+++++|++.- ....+ ++..++ ..++..|+..|.=.. +..-.....+.+..|+.+.+.++
T Consensus 162 ~~~~~~~~~~lgi~~~~~~v~vGD~~~Di-~~a~~aG~~~v~~~~--~~~~~~~~~~~~~~el~~~l~~~ 228 (231)
T 3kzx_A 162 PEPVLAALTNINIEPSKEVFFIGDSISDI-QSAIEAGCLPIKYGS--TNIIKDILSFKNFYDIRNFICQL 228 (231)
T ss_dssp SHHHHHHHHHHTCCCSTTEEEEESSHHHH-HHHHHTTCEEEEECC-------CCEEESSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcccCEEEEcCCHHHH-HHHHHCCCeEEEECC--CCCCCCceeeCCHHHHHHHHHHH
Confidence 3667788899998876 55555 445444 467788876544211 11224567899999999888764
No 92
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=27.79 E-value=38 Score=20.88 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCE
Q 042131 89 AIMEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPL 151 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~ 151 (201)
.+.+.+.++|+....++.+...+......++.++.+|+ +.+++.+.+++.||-+
T Consensus 24 ~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gi---------d~d~l~~~L~~~g~~~ 77 (81)
T 2fi0_A 24 EVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGT---------PMDKIVRTLEANGYEV 77 (81)
T ss_dssp GGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTC---------CHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCC---------CHHHHHHHHHHcCCEe
Confidence 34567777887666677666666666667777777775 5677777888888855
No 93
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=27.33 E-value=58 Score=25.21 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcCCCCceEEeecCCCc
Q 042131 138 ESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGGFDRSLYIEKWAPFV 197 (201)
Q Consensus 138 ~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~~~~~~lvEe~i~G~ 197 (201)
+.+.+.+.+. ....|-..+|+||-.+.++.+.+..+...+.+....-+.+-++.+-.+
T Consensus 275 d~l~~~a~~~--g~~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~~Gi~~~y~~~~g~~ 332 (335)
T 3gon_A 275 RQLKEASQDL--QAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERIGHD 332 (335)
T ss_dssp HHHHHTTTTS--SEEEEECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCEEEEEEEC---
T ss_pred HHHHHHHHhC--CcEEEEccccchheEEEEECCHHHHHHHHHHHHHCCCcEEeehhhcCC
Confidence 4444444444 457897654434446778988765444333332222224555555443
No 94
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=27.28 E-value=17 Score=26.09 Aligned_cols=35 Identities=6% Similarity=-0.219 Sum_probs=26.2
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNF 67 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 67 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+....
T Consensus 134 ~~~~~ak~~g~~vI~IT~~~~s~L~~~-------ad~~l~~~~ 169 (198)
T 2xbl_A 134 AAFREAKAKGMTCVGFTGNRGGEMREL-------CDLLLEVPS 169 (198)
T ss_dssp HHHHHHHHTTCEEEEEECSCCCTHHHH-------CSEEEECSC
T ss_pred HHHHHHHHCCCeEEEEECCCCCcHHHh-------CCEEEEeCC
Confidence 566789999999999988 77777777 665554433
No 95
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=26.52 E-value=1e+02 Score=24.27 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCCC-CCccccCCHHHHHHHHH
Q 042131 114 KYIQKVHFSPHGIPL-PEFMEVNDLESARRAGK 145 (201)
Q Consensus 114 K~~~~~~l~~~gip~-p~~~~~~~~~~~~~~~~ 145 (201)
....-++|+++|+++ |.+..+++.+++.++.+
T Consensus 227 ~~e~l~~L~~~Gf~~~~~~~~~~~~~ev~~~~~ 259 (305)
T 4glw_A 227 QEKGLKYLEQLGFVVNPKRILAENIDEIWNFIQ 259 (305)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCceEEeCCHHHHHHHHH
Confidence 344455667777776 34556667776665544
No 96
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=25.79 E-value=1.3e+02 Score=21.23 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=41.5
Q ss_pred CHHHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCC----CCCCeEEcCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAY----DGRGNAVAKSEEELSSAITA 180 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~----~g~gv~~~~~~~el~~~~~~ 180 (201)
++..+..+++++|++.-....+.+...-...++..|+.++.=...+.. ...--+++++.+|+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~~G~~~~~v~~~~~~~~~~~~~~~~v~~~~~el~~~l~~ 228 (233)
T 3umb_A 157 APAAYALAPRAFGVPAAQILFVSSNGWDACGATWHGFTTFWINRLGHPPEALDVAPAAAGHDMRDLLQFVQA 228 (233)
T ss_dssp SHHHHTHHHHHHTSCGGGEEEEESCHHHHHHHHHHTCEEEEECTTCCCCCSSSCCCSEEESSHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCcccEEEEeCCHHHHHHHHHcCCEEEEEcCCCCCchhccCCCCEEECCHHHHHHHHHH
Confidence 345566788888887555555543333334677889988764432210 11235588999999887654
No 97
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=25.62 E-value=1.8e+02 Score=23.40 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=26.6
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG 182 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~ 182 (201)
+..+++.+-++++ .+.+.|+++|--.. -+.+|+..+++.+.
T Consensus 197 Ar~~~n~~LL~~v-a~~~kPVilk~G~~----------~tl~ei~~Ave~i~ 237 (350)
T 1vr6_A 197 ARNAQNFRLLSKA-GSYNKPVLLKRGFM----------NTIEEFLLSAEYIA 237 (350)
T ss_dssp GGGTTCHHHHHHH-HTTCSCEEEECCTT----------CCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHH-HccCCcEEEcCCCC----------CCHHHHHHHHHHHH
Confidence 4445555544444 36789999997432 26788888887654
No 98
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=25.50 E-value=27 Score=25.50 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=22.0
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
.+++.|++.|.+++.++. .+.+..+.
T Consensus 132 ~~~~~ak~~g~~vi~iT~~~~s~la~~ 158 (201)
T 3trj_A 132 SAVEEAHDLEMKVIALTGGSGGALQNM 158 (201)
T ss_dssp HHHHHHHHTTCEEEEEEETTCCGGGGT
T ss_pred HHHHHHHHCCCcEEEEECCCCCHHHHh
Confidence 666789999999999988 77777777
No 99
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=25.24 E-value=97 Score=20.07 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCcc-cccHHHHHHHhCHHHHHHHHhhCCC----CC--CCccc-------cCCHHHHHHHHHH----hCCC
Q 042131 89 AIMEKLEQQGVDC-QPKASTIRIIQDKYIQKVHFSPHGI----PL--PEFME-------VNDLESARRAGKQ----FGYP 150 (201)
Q Consensus 89 ~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gi----p~--p~~~~-------~~~~~~~~~~~~~----~~~P 150 (201)
...+.|+++|+.. .-+. ...--++...++++++.|+ ++ +.+.. --+.+++.+++.+ +..|
T Consensus 15 kak~~L~~~gi~~~~~di--~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~~~l~~~p~likrP 92 (114)
T 1rw1_A 15 KARTWLDEHKVAYDFHDY--KAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRP 92 (114)
T ss_dssp HHHHHHHHTTCCEEEEEH--HHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSC
T ss_pred HHHHHHHHCCCceEEEee--cCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCCHHHHHHHHHhChhheeCc
Confidence 3456788888732 2232 2223344555666655552 10 11111 1145556555543 4678
Q ss_pred EEEeecCCCCCCCCeEEcCCHHHHHHHH
Q 042131 151 LMVKSKSLAYDGRGNAVAKSEEELSSAI 178 (201)
Q Consensus 151 ~VvKp~~g~~~g~gv~~~~~~~el~~~~ 178 (201)
+|+. |..+.+-.+++++.+.+
T Consensus 93 iv~~-------~~~~~vGf~~~~~~~~l 113 (114)
T 1rw1_A 93 VLEL-------GGRTLVGFKPDAYAAAL 113 (114)
T ss_dssp EEEC-------SSCEEESCCHHHHHHHH
T ss_pred EEEE-------CCEEEEeCCHHHHHHHh
Confidence 8764 33567778888877653
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=24.99 E-value=57 Score=19.83 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=14.4
Q ss_pred CeEEcCCHHHHHHHHHHhcC
Q 042131 164 GNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~ 183 (201)
|.....+.++...+++.+.+
T Consensus 48 afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 48 ALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp EEECC-CHHHHHHHHHHGGG
T ss_pred EEEEECCHHHHHHHHHHcCC
Confidence 45567799999999987753
No 101
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=24.82 E-value=1.2e+02 Score=23.65 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcC
Q 042131 92 EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAK 169 (201)
Q Consensus 92 ~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~ 169 (201)
+.+++.|+++..+. .|..... ++.+ .++. .....+.+.+-+++ +.+.+.|+++|--. ++
T Consensus 83 ~~~~~~Glp~~te~------~d~~~~~-~l~~-~vd~~kIgA~~~~n~~Ll~~-~a~~~kPV~lk~G~---~~------- 143 (292)
T 1o60_A 83 ELKDTFGVKIITDV------HEIYQCQ-PVAD-VVDIIQLPAFLARQTDLVEA-MAKTGAVINVKKPQ---FL------- 143 (292)
T ss_dssp HHHHHHCCEEEEEC------CSGGGHH-HHHT-TCSEEEECGGGTTCHHHHHH-HHHTTCEEEEECCT---TS-------
T ss_pred HHHHHcCCcEEEec------CCHHHHH-HHHh-cCCEEEECcccccCHHHHHH-HHcCCCcEEEeCCC---CC-------
Confidence 44567888654432 2222222 3333 2333 33555677775554 44889999999743 22
Q ss_pred CHHHHHHHHHHh
Q 042131 170 SEEELSSAITAL 181 (201)
Q Consensus 170 ~~~el~~~~~~~ 181 (201)
+.+|+..+.+.+
T Consensus 144 t~~ei~~Av~~i 155 (292)
T 1o60_A 144 SPSQMGNIVEKI 155 (292)
T ss_dssp CGGGHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 445666666554
No 102
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=24.79 E-value=13 Score=26.42 Aligned_cols=35 Identities=9% Similarity=-0.125 Sum_probs=26.1
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCC
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNF 67 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 67 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+....
T Consensus 128 ~~~~~ak~~g~~vi~iT~~~~s~L~~~-------ad~~l~~~~ 163 (188)
T 1tk9_A 128 EALKKAKELNMLCLGLSGKGGGMMNKL-------CDHNLVVPS 163 (188)
T ss_dssp HHHHHHHHTTCEEEEEEEGGGTTHHHH-------CSEEEEESC
T ss_pred HHHHHHHHCCCEEEEEeCCCCcchHHc-------CCEEEEeCC
Confidence 566789999999999988 77777777 666554433
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.59 E-value=92 Score=19.73 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHhCCC----EEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC
Q 042131 136 DLESARRAGKQFGYP----LMVKSKSLAYDGRGNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 136 ~~~~~~~~~~~~~~P----~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~ 183 (201)
+.+++.++...+|-- +.++...|...|.+.....+.++...++..+.+
T Consensus 38 t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 38 TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 456666666665421 344544433234466678899999999987653
No 104
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=24.41 E-value=1.7e+02 Score=22.26 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEc
Q 042131 91 MEKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVA 168 (201)
Q Consensus 91 ~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~ 168 (201)
.+.+++.|+++..+. .|.... +++.++ ++. .....+++.+-++++ .+.+.|+++|--. ++
T Consensus 80 ~~~~~~~Gl~~~te~------~d~~~~-~~l~~~-vd~~kIga~~~~n~~ll~~~-a~~~kPV~lk~G~---~~------ 141 (262)
T 1zco_A 80 REAADEYGLVTVTEV------MDTRHV-ELVAKY-SDILQIGARNSQNFELLKEV-GKVENPVLLKRGM---GN------ 141 (262)
T ss_dssp HHHHHHHTCEEEEEC------CCGGGH-HHHHHH-CSEEEECGGGTTCHHHHHHH-TTSSSCEEEECCT---TC------
T ss_pred HHHHHHcCCcEEEee------CCHHhH-HHHHhh-CCEEEECcccccCHHHHHHH-HhcCCcEEEecCC---CC------
Confidence 345567787654432 122221 233333 332 334556665545544 4488999999633 22
Q ss_pred CCHHHHHHHHHHhc
Q 042131 169 KSEEELSSAITALG 182 (201)
Q Consensus 169 ~~~~el~~~~~~~~ 182 (201)
+.+|+.++++.+.
T Consensus 142 -t~~e~~~Av~~i~ 154 (262)
T 1zco_A 142 -TIQELLYSAEYIM 154 (262)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 6888888887764
No 105
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=24.17 E-value=2.5e+02 Score=21.64 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhc--CCCCceEEeecC
Q 042131 129 PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALG--GFDRSLYIEKWA 194 (201)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~--~~~~~~lvEe~i 194 (201)
.....+++.+-++. +.+.+.|+++|--.. -+.+|+..+++.+. +.++-+|+++.+
T Consensus 127 Igs~~~~n~~ll~~-~a~~~kPV~lk~G~~----------~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~ 183 (276)
T 1vs1_A 127 IGARNMQNFPLLRE-VGRSGKPVLLKRGFG----------NTVEELLAAAEYILLEGNWQVVLVERGI 183 (276)
T ss_dssp ECGGGTTCHHHHHH-HHHHTCCEEEECCTT----------CCHHHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred ECcccccCHHHHHH-HHccCCeEEEcCCCC----------CCHHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34556667665554 447899999997432 26788888887664 222345556555
No 106
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=24.00 E-value=88 Score=26.23 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=56.5
Q ss_pred Cchhhhh----cccc-cccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhhcCCeEEecccc-CCH
Q 042131 16 SPTIHCR----RGRR-FPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVVACGVLTVEIEH-VDV 88 (201)
Q Consensus 16 ~~~i~~~----~g~~-l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~~~d~i~~~~~~-i~~ 88 (201)
..+++++ +|.. +++.++++|++|.+.|. .......+.. ....+... .+.+.+..+|.+.....- ...
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~-----~gi~~~~g-~~~~~~~~~d~vV~Spgi~~~~ 95 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTA-----LGAQIYFH-HRPENVLDASVVVVSTAISADN 95 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-----TTCEEESS-CCGGGGTTCSEEEECTTSCTTC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH-----CCCEEECC-CCHHHcCCCCEEEECCCCCCCC
Confidence 3456654 4553 78899999999999987 3322122200 00111111 223334456665432211 122
Q ss_pred HHHHHHHHCCCcccccHHHHHHH-hC---------------HHHHHHHHhhCCCC
Q 042131 89 AIMEKLEQQGVDCQPKASTIRII-QD---------------KYIQKVHFSPHGIP 127 (201)
Q Consensus 89 ~~~~~l~~~g~~~~~~~~~~~~~-~d---------------K~~~~~~l~~~gip 127 (201)
..+..+.+.|+++....+.+... ++ +.....+|+..|..
T Consensus 96 p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 150 (494)
T 4hv4_A 96 PEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLD 150 (494)
T ss_dssp HHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCCC
Confidence 34566677788877777765432 22 35566667777763
No 107
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=23.75 E-value=81 Score=25.20 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=13.5
Q ss_pred HHHHHHhhCCCCCC-CccccCCHHHHHHHHHH
Q 042131 116 IQKVHFSPHGIPLP-EFMEVNDLESARRAGKQ 146 (201)
Q Consensus 116 ~~~~~l~~~gip~p-~~~~~~~~~~~~~~~~~ 146 (201)
...++|+++|+++. .+..+.+.+++.++.+.
T Consensus 251 e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~ 282 (328)
T 1zau_A 251 QAYLALRAWGLPVSEHTTLATDLAGVRERIDY 282 (328)
T ss_dssp HHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEeCCHHHHHHHHHH
Confidence 33344445555542 23344444444444433
No 108
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.66 E-value=18 Score=25.73 Aligned_cols=26 Identities=4% Similarity=-0.181 Sum_probs=21.5
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
.+++.|++.|.+++.++. .+.+..+.
T Consensus 97 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ 123 (186)
T 1m3s_A 97 HTAAKAKSLHGIVAALTINPESSIGKQ 123 (186)
T ss_dssp HHHHHHHHTTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCchHHh
Confidence 567889999999999988 77776666
No 109
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.65 E-value=18 Score=24.51 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=22.2
Q ss_pred Cchhhhh----cccccccccccCCCeEEEECC
Q 042131 16 SPTIHCR----RGRRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 16 ~~~i~~~----~g~~l~~aa~~~G~~v~~~~~ 43 (201)
..++.+. -|+.+++.+++.|+++++++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~ 38 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIET 38 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 4455554 357889999999999999997
No 110
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=23.33 E-value=40 Score=24.30 Aligned_cols=58 Identities=5% Similarity=-0.067 Sum_probs=34.7
Q ss_pred chhhhhc-----ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCCHhhhh----cCCeEE
Q 042131 17 PTIHCRR-----GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFELPVAVV----ACGVLT 80 (201)
Q Consensus 17 ~~i~~~~-----g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d~~~l~----~~d~i~ 80 (201)
++|++.+ |+.+++.+.+.|++|++++. .... .... .....+..|..|.+.+. .+|++.
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi 72 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI-KIEN-----EHLKVKKADVSSLDEVCEVCKGADAVI 72 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC-CCCC-----TTEEEECCCTTCHHHHHHHHTTCSEEE
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc-hhcc-----CceEEEEecCCCHHHHHHHhcCCCEEE
Confidence 3555543 46889999999999999986 2211 1110 01123456777766555 667665
No 111
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.98 E-value=17 Score=25.83 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=25.7
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCcccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVH 65 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~ 65 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+..
T Consensus 105 ~~~~~ak~~g~~vi~IT~~~~s~l~~~-------ad~~l~~ 138 (187)
T 3sho_A 105 AALAGAAERGVPTMALTDSSVSPPARI-------ADHVLVA 138 (187)
T ss_dssp HHHHHHHHTTCCEEEEESCTTSHHHHH-------CSEEEEC
T ss_pred HHHHHHHHCCCCEEEEeCCCCCcchhh-------CcEEEEe
Confidence 566789999999999998 77777777 6665443
No 112
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=22.26 E-value=37 Score=24.51 Aligned_cols=50 Identities=6% Similarity=0.121 Sum_probs=31.0
Q ss_pred ccccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccccCCCC-Hhhhh----cCCeEE
Q 042131 24 GRRFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEVHNFEL-PVAVV----ACGVLT 80 (201)
Q Consensus 24 g~~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~d-~~~l~----~~d~i~ 80 (201)
|+.+++.+.+.|++|++++. .... .... -...+..|..| .+.+. .+|++.
T Consensus 13 G~~l~~~L~~~g~~V~~~~R~~~~~-~~~~------~~~~~~~D~~d~~~~~~~~~~~~d~vi 68 (219)
T 3dqp_A 13 GKSLLKSLSTTDYQIYAGARKVEQV-PQYN------NVKAVHFDVDWTPEEMAKQLHGMDAII 68 (219)
T ss_dssp HHHHHHHHTTSSCEEEEEESSGGGS-CCCT------TEEEEECCTTSCHHHHHTTTTTCSEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCccch-hhcC------CceEEEecccCCHHHHHHHHcCCCEEE
Confidence 57888999999999998886 2211 1110 11234567777 66555 667665
No 113
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Probab=22.18 E-value=23 Score=26.30 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=20.5
Q ss_pred CCCchhhhhcc--------cccccccccCCCeEEEECC
Q 042131 14 LPSPTIHCRRG--------RRFPVDRPLKDSRLWELDS 43 (201)
Q Consensus 14 ~~~~~i~~~~g--------~~l~~aa~~~G~~v~~~~~ 43 (201)
..++.|.++.| +.++..+.+.||+|+.+|.
T Consensus 8 ~~g~~vvllHG~~~~~~~w~~~~~~L~~~g~~via~Dl 45 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDL 45 (264)
T ss_dssp -CCCEEEEECCTTCCGGGGTTHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEECCCccccchHHHHHHHHHhCCCEEEEeec
Confidence 45666666654 2355566678999999997
No 114
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.09 E-value=17 Score=25.72 Aligned_cols=26 Identities=4% Similarity=-0.221 Sum_probs=21.7
Q ss_pred ccccccccCCCeEEEECC-CCCccccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGI 51 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~ 51 (201)
.+++.|++.|.+++.++. .+.+..+.
T Consensus 114 ~~~~~ak~~g~~vi~IT~~~~s~la~~ 140 (183)
T 2xhz_A 114 ALIPVLKRLHVPLICITGRPESSMARA 140 (183)
T ss_dssp HHHHHHHTTTCCEEEEESCTTSHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCChhHHh
Confidence 566789999999999988 77777777
No 115
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=21.64 E-value=1.5e+02 Score=20.49 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCCCCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCC--CeEEcCCHHHHHHHHHHhcC
Q 042131 115 YIQKVHFSPHGIPLPEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGR--GNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 115 ~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~--gv~~~~~~~el~~~~~~~~~ 183 (201)
..++.+++++|++.-....+.+...-...++..|++.|.=..... .-+ .-+++.+.+||.+.++.-.+
T Consensus 131 ~~~~~~~~~~g~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~-~~~~~ad~v~~~~~el~~~~~~~~~ 200 (205)
T 3m9l_A 131 GGLLKLAEAWDVSPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPDN-PWPELTDWHARDCAQLRDLLSAEGH 200 (205)
T ss_dssp HHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTCEEEECSSSSC-SCGGGCSEECSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCEEEEEeCCCC-cccccCCEEeCCHHHHHHHHHhccc
Confidence 456778888888755555554333333467778885443322111 111 45688999999998877543
No 116
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=21.34 E-value=1.2e+02 Score=24.35 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=21.7
Q ss_pred CHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQ 146 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~ 146 (201)
......++|+++|+|+++ +..+.+.+++.++.+.
T Consensus 239 t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~ 273 (332)
T 1ta8_A 239 TQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEE 273 (332)
T ss_dssp BHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHH
Confidence 344555677777777754 4567777777666544
No 117
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.85 E-value=15 Score=26.66 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=25.4
Q ss_pred ccccccccCCCeEEEECC-CCCcccccCCCCCCCCCCccc
Q 042131 26 RFPVDRPLKDSRLWELDS-GAIAARGISPPPLLDSARPEV 64 (201)
Q Consensus 26 ~l~~aa~~~G~~v~~~~~-~~~~~~~~~~~~~~~a~~~~~ 64 (201)
.+++.|++.|.+++.++. .+.+..+. +|..+.
T Consensus 107 ~~~~~ak~~g~~vI~IT~~~~s~La~~-------ad~~l~ 139 (200)
T 1vim_A 107 NISKKAKDIGSKLVAVTGKRDSSLAKM-------ADVVMV 139 (200)
T ss_dssp HHHHHHHHHTCEEEEEESCTTSHHHHH-------CSEEEE
T ss_pred HHHHHHHHCCCeEEEEECCCCChHHHh-------CCEEEE
Confidence 567889999999999998 77777777 666544
No 118
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.51 E-value=1.3e+02 Score=26.58 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=21.2
Q ss_pred CHHHHHHHHhhCCCCCCC-ccccCCHHHHHHHHHH
Q 042131 113 DKYIQKVHFSPHGIPLPE-FMEVNDLESARRAGKQ 146 (201)
Q Consensus 113 dK~~~~~~l~~~gip~p~-~~~~~~~~~~~~~~~~ 146 (201)
.....-++|+++|+|+.+ +..+.+.+++.++.+.
T Consensus 238 t~~e~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~ 272 (671)
T 2owo_A 238 THLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHK 272 (671)
T ss_dssp BHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCcceeeCCHHHHHHHHHH
Confidence 344455667777777754 4466777777666544
No 119
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=20.36 E-value=1.7e+02 Score=22.73 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=39.3
Q ss_pred HHHHHCCCcccccHHHHHHHhCHHHHHHHHhhCCCCC--CCccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcC
Q 042131 92 EKLEQQGVDCQPKASTIRIIQDKYIQKVHFSPHGIPL--PEFMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAK 169 (201)
Q Consensus 92 ~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~--p~~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~ 169 (201)
+..++.|+++..+. .|.... +++.++ ++. .....+.+.+-+++ +.+.+.|+++|--.. -
T Consensus 85 ~~~~e~Glp~~Tev------~d~~~v-~~l~~~-vd~lqIgA~~~~n~~LLr~-va~~gkPVilK~G~~----------~ 145 (285)
T 3sz8_A 85 EVKARFGVPVITDV------HEAEQA-APVAEI-ADVLQVPAFLARQTDLVVA-IAKAGKPVNVKKPQF----------M 145 (285)
T ss_dssp HHHHHHCCCEEEEC------CSGGGH-HHHHTT-CSEEEECGGGTTCHHHHHH-HHHTSSCEEEECCTT----------S
T ss_pred HHHHhcCCeEEEEe------CCHHHH-HHHHHh-CCEEEECccccCCHHHHHH-HHccCCcEEEeCCCC----------C
Confidence 45567787654432 222222 234443 333 33555677775544 557899999997331 2
Q ss_pred CHHHHHHHHHHh
Q 042131 170 SEEELSSAITAL 181 (201)
Q Consensus 170 ~~~el~~~~~~~ 181 (201)
+.+|+..+++.+
T Consensus 146 t~~ei~~ave~i 157 (285)
T 3sz8_A 146 SPTQLKHVVSKC 157 (285)
T ss_dssp CGGGTHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 556666666654
No 120
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=20.29 E-value=2.1e+02 Score=23.24 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=32.5
Q ss_pred ccccCCHHHHHHHHHHhCCCEEEeecCCCCCCCCeEEcCCHHHHHHHHHHhcC-CCCceEEee
Q 042131 131 FMEVNDLESARRAGKQFGYPLMVKSKSLAYDGRGNAVAKSEEELSSAITALGG-FDRSLYIEK 192 (201)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~P~VvKp~~g~~~g~gv~~~~~~~el~~~~~~~~~-~~~~~lvEe 192 (201)
+..+++.+ +...+.+.+.|+++|--.. .+.+|+..+++.+.. ++.++++=+
T Consensus 233 s~~~~n~~-LL~~~a~~gkPVilk~G~~----------~t~~e~~~Ave~i~~~Gn~~i~L~~ 284 (385)
T 3nvt_A 233 ARNMQNFE-LLKAAGRVDKPILLKRGLS----------ATIEEFIGAAEYIMSQGNGKIILCE 284 (385)
T ss_dssp GGGTTCHH-HHHHHHTSSSCEEEECCTT----------CCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred cccccCHH-HHHHHHccCCcEEEecCCC----------CCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 44555654 4445667899999997432 378899888888753 233354433
No 121
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=20.09 E-value=95 Score=19.08 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=15.8
Q ss_pred CeEEcCCHHHHHHHHHHhcC
Q 042131 164 GNAVAKSEEELSSAITALGG 183 (201)
Q Consensus 164 gv~~~~~~~el~~~~~~~~~ 183 (201)
+.....+.++...+++.+.+
T Consensus 66 afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 66 ATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp EEEEBSSHHHHHHHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHhCC
Confidence 55577899999999987754
Done!