BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042133
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RAW|B Chain B, Crystal Structure Of The Borealin-survivin Complex
 pdb|2RAX|B Chain B, Crystal Structure Of Borealin (20-78) Bound To Survivin
           (1-120)
 pdb|2RAX|F Chain F, Crystal Structure Of Borealin (20-78) Bound To Survivin
           (1-120)
 pdb|2RAX|Y Chain Y, Crystal Structure Of Borealin (20-78) Bound To Survivin
           (1-120)
          Length = 68

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 137 EVLELPQATTGGSWLDFYAMG 157
           E+L LP+A    +WLD++A+G
Sbjct: 39  EILRLPKALREMNWLDYFALG 59


>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
           Opacus In The Unbound State
 pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
           Opacus In The Unbound State
 pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
           Complex With L-Alanine
 pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
           Complex With L-Alanine
 pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
           Opacus In Complex With O-Aminobenzoate
 pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
           Opacus In Complex With O-Aminobenzoate
 pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
           Opacus In Complex With L-Phenylalanine.
 pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
           Opacus In Complex With L-Phenylalanine
          Length = 489

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 158 FDGTTSTYKIVRV--FGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDD 215
             G + TY+  +   FG  SE+    T        +  ED D +S  +S +GD+  +DD 
Sbjct: 121 LSGQSVTYRAAKADTFGYMSELLKKATDQGALDQVLSREDKDALSEFLSDFGDL--SDDG 178

Query: 216 HFSFGQRKGVDNCVIISFDFKKEE 239
            +    R+G D+      +F  E+
Sbjct: 179 RYLGSSRRGYDSEPGAGLNFGTEK 202


>pdb|3LHL|A Chain A, Crystal Structure Of A Putative Agmatinase From
           Clostridium Difficile
          Length = 287

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 149 SWLDFYAMGFDGTTSTYKIVRVFGK--RSEIYTLGTSSWREISSVPPEDLDNMSNGVSAY 206
           S L  + +GFDGTTS     R      R E Y L T S       P  DLD     +  Y
Sbjct: 8   SNLIVFGVGFDGTTSNRPGARFASSSXRKEFYGLETYS-------PFLDLDLEDYNICDY 60

Query: 207 GDMHWA 212
           GD+  +
Sbjct: 61  GDLEIS 66


>pdb|3AIS|A Chain A, Crystal Structure Of A Mutant Beta-Glucosidase In Wheat
           Complexed With Dimboa-Glc
          Length = 565

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 158 FDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDD 215
           F  +TS Y+I   + +  +    G S+W       PE + +M+NG  A    H  ++D
Sbjct: 80  FGASTSAYQIEGAWNEDGK----GPSTWDHFCHTYPERISDMTNGDVAANSYHLYEED 133


>pdb|2DGA|A Chain A, Crystal Structure Of Hexameric Beta-Glucosidase In Wheat
 pdb|3AIQ|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
           With An Aglycone Dimboa
 pdb|3AIR|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
           With 2-Deoxy- 2-Fluoroglucoside And Dinitrophenol
          Length = 565

 Score = 27.7 bits (60), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 158 FDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDD 215
           F  +TS Y+I   + +  +    G S+W       PE + +M+NG  A    H  ++D
Sbjct: 80  FGASTSAYQIEGAWNEDGK----GPSTWDHFCHTYPERISDMTNGDVAANSYHLYEED 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,602,842
Number of Sequences: 62578
Number of extensions: 396173
Number of successful extensions: 746
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 7
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)