Query 042133
Match_columns 299
No_of_seqs 128 out of 1360
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1E-31 2.2E-36 224.7 20.6 175 110-297 1-188 (230)
2 PF08268 FBA_3: F-box associat 99.6 2.1E-14 4.6E-19 108.8 10.9 85 202-296 1-90 (129)
3 PF07734 FBA_1: F-box associat 99.5 5.6E-13 1.2E-17 105.3 11.6 88 202-298 1-95 (164)
4 PLN03215 ascorbic acid mannose 99.4 2.4E-11 5.2E-16 106.1 19.0 254 3-297 1-305 (373)
5 PF12937 F-box-like: F-box-lik 99.1 1.2E-10 2.5E-15 71.6 2.9 42 6-47 1-42 (47)
6 PF00646 F-box: F-box domain; 98.9 6.9E-10 1.5E-14 68.6 2.5 44 6-49 3-46 (48)
7 smart00256 FBOX A Receptor for 98.8 2.9E-09 6.3E-14 63.3 3.1 39 9-47 1-39 (41)
8 PHA02713 hypothetical protein; 98.8 1.1E-06 2.3E-11 82.9 19.5 170 109-297 298-500 (557)
9 PHA02713 hypothetical protein; 98.7 1E-06 2.2E-11 83.0 18.2 161 108-294 345-541 (557)
10 KOG4441 Proteins containing BT 98.6 2.2E-06 4.9E-11 80.6 16.1 167 108-296 326-509 (571)
11 KOG4441 Proteins containing BT 98.6 3.6E-06 7.9E-11 79.2 17.1 163 108-295 374-555 (571)
12 PHA02790 Kelch-like protein; P 98.6 2.6E-06 5.7E-11 78.9 15.8 132 109-272 313-454 (480)
13 PHA03098 kelch-like protein; P 98.5 9.9E-06 2.2E-10 76.3 17.3 149 126-296 311-474 (534)
14 PLN02153 epithiospecifier prot 98.4 2.4E-05 5.2E-10 69.4 17.8 170 110-294 81-292 (341)
15 PHA03098 kelch-like protein; P 98.4 1.6E-05 3.5E-10 74.8 17.6 166 110-295 338-520 (534)
16 PHA02790 Kelch-like protein; P 98.4 1.5E-05 3.1E-10 74.0 16.7 142 126-296 287-433 (480)
17 PLN02193 nitrile-specifier pro 98.3 6.7E-05 1.5E-09 69.4 19.0 168 110-296 224-420 (470)
18 TIGR03547 muta_rot_YjhT mutatr 98.3 7.4E-05 1.6E-09 66.4 18.1 173 111-296 14-237 (346)
19 PLN02153 epithiospecifier prot 98.3 0.00017 3.7E-09 63.9 19.2 161 126-295 50-234 (341)
20 TIGR03548 mutarot_permut cycli 98.2 6.3E-05 1.4E-09 66.2 15.2 152 109-272 118-311 (323)
21 TIGR03547 muta_rot_YjhT mutatr 98.2 0.001 2.2E-08 59.1 22.0 95 173-272 168-265 (346)
22 PLN02193 nitrile-specifier pro 98.2 0.00013 2.9E-09 67.4 16.9 155 127-296 194-361 (470)
23 PRK14131 N-acetylneuraminic ac 98.2 0.00016 3.5E-09 64.9 16.9 173 111-296 35-258 (376)
24 TIGR03548 mutarot_permut cycli 98.1 0.00028 6.1E-09 62.1 17.2 131 126-272 88-231 (323)
25 KOG0281 Beta-TrCP (transducin 98.1 7.9E-05 1.7E-09 63.6 12.8 42 7-48 76-121 (499)
26 PRK14131 N-acetylneuraminic ac 98.1 0.0018 3.9E-08 58.2 21.4 96 173-272 189-287 (376)
27 KOG4693 Uncharacterized conser 97.9 0.00027 5.8E-09 58.5 11.6 117 173-295 157-285 (392)
28 KOG2120 SCF ubiquitin ligase, 97.8 1.1E-05 2.4E-10 67.9 2.4 41 5-45 97-137 (419)
29 KOG2997 F-box protein FBX9 [Ge 96.7 0.0011 2.3E-08 56.3 2.7 46 6-51 107-157 (366)
30 KOG0379 Kelch repeat-containin 96.6 0.2 4.3E-06 46.7 17.0 157 127-297 140-312 (482)
31 COG4257 Vgb Streptogramin lyas 95.9 0.37 8E-06 40.7 13.1 144 108-277 193-341 (353)
32 PF13964 Kelch_6: Kelch motif 95.8 0.032 6.9E-07 34.1 5.1 42 200-246 5-47 (50)
33 KOG0379 Kelch repeat-containin 95.2 0.98 2.1E-05 42.1 14.8 154 127-294 89-257 (482)
34 KOG1230 Protein containing rep 95.0 1 2.3E-05 40.2 13.4 163 127-298 99-292 (521)
35 KOG1230 Protein containing rep 94.9 0.53 1.1E-05 41.9 11.4 114 173-294 98-223 (521)
36 PF07762 DUF1618: Protein of u 94.8 0.36 7.7E-06 36.3 9.0 70 229-298 7-98 (131)
37 PF01344 Kelch_1: Kelch motif; 94.3 0.084 1.8E-06 31.6 3.9 42 200-246 5-47 (47)
38 KOG0274 Cdc4 and related F-box 94.3 3.7 8.1E-05 38.8 16.4 43 5-47 107-149 (537)
39 KOG4693 Uncharacterized conser 94.1 0.84 1.8E-05 38.4 10.2 137 126-272 157-310 (392)
40 PF07646 Kelch_2: Kelch motif; 94.0 0.19 4.2E-06 30.5 5.1 44 200-246 5-48 (49)
41 PF07893 DUF1668: Protein of u 91.9 8.7 0.00019 34.1 14.6 146 109-272 71-251 (342)
42 PF13964 Kelch_6: Kelch motif 90.5 0.32 6.9E-06 29.6 2.8 21 125-145 27-47 (50)
43 PF02191 OLF: Olfactomedin-lik 89.3 6.3 0.00014 33.3 10.5 76 199-285 71-156 (250)
44 KOG4341 F-box protein containi 89.2 0.23 5.1E-06 44.3 1.9 37 7-43 73-109 (483)
45 KOG4152 Host cell transcriptio 87.6 6 0.00013 36.5 9.6 159 126-293 57-245 (830)
46 PF13418 Kelch_4: Galactose ox 85.6 1.2 2.6E-05 26.7 3.1 37 202-243 7-44 (49)
47 smart00284 OLF Olfactomedin-li 85.5 13 0.00027 31.5 10.0 76 199-285 76-161 (255)
48 PF13360 PQQ_2: PQQ-like domai 82.2 26 0.00056 28.6 13.3 154 111-291 73-237 (238)
49 PLN02772 guanylate kinase 82.0 12 0.00025 33.9 8.9 75 200-284 28-107 (398)
50 smart00612 Kelch Kelch domain. 81.4 3.6 7.8E-05 23.9 4.0 21 125-145 14-34 (47)
51 KOG0316 Conserved WD40 repeat- 79.8 34 0.00075 28.5 11.2 113 112-248 26-143 (307)
52 PF13360 PQQ_2: PQQ-like domai 79.8 28 0.00061 28.4 10.3 106 113-240 35-144 (238)
53 KOG2502 Tub family proteins [G 77.6 1.5 3.3E-05 38.1 1.9 39 4-42 43-89 (355)
54 COG3055 Uncharacterized protei 76.4 7.6 0.00017 34.2 5.8 116 173-295 113-264 (381)
55 PLN02919 haloacid dehalogenase 76.2 1E+02 0.0022 32.1 17.1 155 114-284 694-889 (1057)
56 PF13570 PQQ_3: PQQ-like domai 74.6 5.1 0.00011 22.8 3.1 25 201-237 16-40 (40)
57 KOG0279 G protein beta subunit 72.2 62 0.0013 27.7 13.2 136 125-284 126-263 (315)
58 KOG0293 WD40 repeat-containing 72.2 41 0.0009 30.4 9.2 49 229-284 377-426 (519)
59 PRK11138 outer membrane biogen 70.5 82 0.0018 28.4 14.4 104 113-238 119-225 (394)
60 PF13415 Kelch_3: Galactose ox 70.0 12 0.00027 22.3 4.2 20 228-247 19-39 (49)
61 KOG2055 WD40 repeat protein [G 66.6 1.1E+02 0.0023 28.2 14.9 140 123-285 277-419 (514)
62 smart00564 PQQ beta-propeller 66.3 18 0.00039 19.2 4.1 26 203-240 3-28 (33)
63 COG3055 Uncharacterized protei 65.8 99 0.0021 27.5 11.6 117 173-298 196-338 (381)
64 PF13013 F-box-like_2: F-box-l 65.0 5.8 0.00013 28.7 2.3 29 6-34 22-50 (109)
65 cd01206 Homer Homer type EVH1 64.4 21 0.00046 25.7 4.9 41 125-171 10-51 (111)
66 PF08450 SGL: SMP-30/Gluconola 63.7 50 0.0011 27.3 8.2 31 206-247 11-41 (246)
67 PRK11138 outer membrane biogen 61.5 1.2E+02 0.0027 27.2 14.9 28 200-239 250-277 (394)
68 COG1520 FOG: WD40-like repeat 61.1 80 0.0017 28.2 9.4 71 202-293 64-138 (370)
69 COG4257 Vgb Streptogramin lyas 60.8 27 0.00059 29.9 5.7 52 229-283 125-186 (353)
70 PF07893 DUF1668: Protein of u 60.0 1.3E+02 0.0027 26.8 12.1 84 174-272 200-296 (342)
71 PF15408 PH_7: Pleckstrin homo 56.9 5.9 0.00013 27.0 1.0 25 23-47 76-100 (104)
72 PF10282 Lactonase: Lactonase, 56.4 1.4E+02 0.0031 26.3 12.3 122 154-294 195-332 (345)
73 TIGR03300 assembly_YfgL outer 56.2 1.5E+02 0.0032 26.4 15.0 23 114-138 105-127 (377)
74 PF01344 Kelch_1: Kelch motif; 53.8 42 0.00091 19.4 6.5 38 259-297 5-47 (47)
75 PF08450 SGL: SMP-30/Gluconola 53.6 92 0.002 25.7 8.1 54 201-271 187-244 (246)
76 PF03088 Str_synth: Strictosid 52.8 50 0.0011 22.9 5.2 66 207-281 10-86 (89)
77 PF12458 DUF3686: ATPase invol 51.9 45 0.00097 30.3 5.9 118 126-283 253-384 (448)
78 KOG3926 F-box proteins [Amino 46.6 29 0.00064 29.4 3.7 43 5-47 201-244 (332)
79 KOG0278 Serine/threonine kinas 46.6 1.1E+02 0.0024 25.9 7.0 49 228-284 246-298 (334)
80 cd01207 Ena-Vasp Enabled-VASP- 46.4 42 0.00091 24.4 4.1 43 125-171 8-51 (111)
81 KOG0310 Conserved WD40 repeat- 45.4 1.4E+02 0.0029 27.6 7.9 132 132-284 8-142 (487)
82 COG3490 Uncharacterized protei 44.2 2.2E+02 0.0047 24.8 10.5 60 202-272 120-180 (366)
83 PF02191 OLF: Olfactomedin-lik 41.2 2.2E+02 0.0048 24.0 12.2 120 113-249 77-216 (250)
84 PF01011 PQQ: PQQ enzyme repea 40.4 44 0.00096 18.6 2.9 13 229-241 11-23 (38)
85 PF07250 Glyoxal_oxid_N: Glyox 38.5 2E+02 0.0044 24.2 7.6 94 173-281 46-146 (243)
86 TIGR03300 assembly_YfgL outer 37.6 2.9E+02 0.0063 24.4 10.0 9 230-238 117-125 (377)
87 KOG0286 G-protein beta subunit 36.0 2.9E+02 0.0064 24.0 12.7 134 124-282 164-302 (343)
88 KOG0639 Transducin-like enhanc 34.4 2.7E+02 0.0058 26.2 8.0 50 229-284 488-540 (705)
89 COG3386 Gluconolactonase [Carb 33.8 2.5E+02 0.0054 24.6 7.8 33 207-250 37-69 (307)
90 COG3386 Gluconolactonase [Carb 32.7 3.4E+02 0.0074 23.7 11.4 19 229-247 236-254 (307)
91 KOG0294 WD40 repeat-containing 32.3 3.5E+02 0.0076 23.8 14.5 132 125-284 148-282 (362)
92 KOG3545 Olfactomedin and relat 31.8 2.9E+02 0.0063 23.3 7.3 75 199-284 70-154 (249)
93 PF07433 DUF1513: Protein of u 31.7 2.4E+02 0.0053 24.6 7.2 50 229-283 29-85 (305)
94 KOG0640 mRNA cleavage stimulat 31.4 2.4E+02 0.0052 24.7 6.9 62 206-283 272-335 (430)
95 TIGR03074 PQQ_membr_DH membran 31.2 4.4E+02 0.0096 26.4 9.8 32 199-242 187-220 (764)
96 TIGR03032 conserved hypothetic 30.1 2.4E+02 0.0052 24.8 6.8 53 200-272 206-259 (335)
97 KOG2321 WD40 repeat protein [G 29.3 5.2E+02 0.011 24.8 13.7 151 109-290 182-351 (703)
98 KOG1310 WD40 repeat protein [G 29.2 3.8E+02 0.0081 25.6 8.2 67 112-182 59-126 (758)
99 KOG0308 Conserved WD40 repeat- 27.7 5.8E+02 0.013 24.9 12.3 158 112-285 82-245 (735)
100 smart00135 LY Low-density lipo 26.9 1.2E+02 0.0026 16.6 3.5 21 206-237 20-40 (43)
101 KOG2139 WD40 repeat protein [G 26.3 2.7E+02 0.0059 25.0 6.5 51 227-284 217-269 (445)
102 PF14339 DUF4394: Domain of un 26.2 1.5E+02 0.0033 24.7 4.9 54 112-168 36-91 (236)
103 PF12768 Rax2: Cortical protei 26.0 1.6E+02 0.0035 25.4 5.2 62 173-245 16-81 (281)
104 PF07433 DUF1513: Protein of u 25.9 4.5E+02 0.0098 23.0 10.5 70 172-249 27-98 (305)
105 KOG2055 WD40 repeat protein [G 24.3 5.3E+02 0.011 24.0 8.1 90 172-272 234-332 (514)
106 KOG1332 Vesicle coat complex C 24.1 4.5E+02 0.0097 22.3 14.2 62 227-296 234-297 (299)
107 PF06881 Elongin_A: RNA polyme 23.9 87 0.0019 22.5 2.8 29 5-33 3-31 (109)
108 PF07250 Glyoxal_oxid_N: Glyox 23.4 4.5E+02 0.0098 22.1 9.1 84 127-217 47-139 (243)
109 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.0 6.3E+02 0.014 24.0 9.0 75 199-292 62-146 (527)
110 KOG1912 WD40 repeat protein [G 22.6 3.1E+02 0.0067 27.4 6.6 53 229-287 253-308 (1062)
111 PF07569 Hira: TUP1-like enhan 22.4 4.1E+02 0.0089 21.8 6.8 80 108-191 16-105 (219)
112 KOG0640 mRNA cleavage stimulat 22.0 4.1E+02 0.009 23.4 6.7 49 229-281 239-289 (430)
113 KOG1274 WD40 repeat protein [G 21.0 8.9E+02 0.019 24.7 13.3 93 172-286 75-171 (933)
114 KOG2394 WD40 protein DMR-N9 [G 20.5 2.6E+02 0.0057 26.4 5.6 61 228-295 312-381 (636)
115 TIGR03074 PQQ_membr_DH membran 20.3 8.9E+02 0.019 24.4 12.4 124 113-240 193-348 (764)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1e-31 Score=224.68 Aligned_cols=175 Identities=27% Similarity=0.465 Sum_probs=137.3
Q ss_pred EeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCC-Ccc-eEEEeEeCCCCCEEEEEEe-------CceEEEEEc
Q 042133 110 SHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGS-WLD-FYAMGFDGTTSTYKIVRVF-------GKRSEIYTL 180 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~-~~~-~~~l~~d~~~~~ykvv~~~-------~~~~~vyss 180 (299)
++|||||||+. . ...++||||+||+++.||+++.... ... .++||||+.+++||||++. ...++||++
T Consensus 1 ~~sCnGLlc~~--~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 1 VVPCDGLICFS--Y-GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred CcccceEEEEe--c-CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 47999999998 5 3789999999999999997763211 111 3899999999999999997 268999999
Q ss_pred CCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCcccccee
Q 042133 181 GTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFV 259 (299)
Q Consensus 181 ~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~ 259 (299)
++++||.+...+...... ..++++||.+||++.... ......|++||+++|+|+ .+++|..... .....
T Consensus 78 ~~~~Wr~~~~~~~~~~~~-~~~v~~~G~lyw~~~~~~------~~~~~~IvsFDl~~E~f~~~i~~P~~~~~---~~~~~ 147 (230)
T TIGR01640 78 GSNSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTLK------TNPDYFIVSFDVSSERFKEFIPLPCGNSD---SVDYL 147 (230)
T ss_pred CCCCccccccCCCCcccc-CCeEEECCEEEEEEEECC------CCCcEEEEEEEcccceEeeeeecCccccc---cccce
Confidence 999999998543332222 249999999999997643 111237999999999999 5898875431 12246
Q ss_pred EEE-ECCeEEEEEe--CCCeEEEEEeccCCCCceeEEEEEe
Q 042133 260 MIN-LKGCLAIVIL--TPEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 260 ~l~-~~g~L~~~~~--~~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
.|+ ++|+||++.. ....++||+|+|+++++|+|.++|+
T Consensus 148 ~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred EEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence 788 9999999988 3467999999988877999999997
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.58 E-value=2.1e-14 Score=108.84 Aligned_cols=85 Identities=31% Similarity=0.576 Sum_probs=68.3
Q ss_pred ceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe-CC---Ce
Q 042133 202 GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL-TP---ED 276 (299)
Q Consensus 202 ~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~~---~~ 276 (299)
|+++||.+||++.... .....|++||+++|+|+.|++|.... .......|. ++|+|+++.. .. ..
T Consensus 1 gicinGvly~~a~~~~-------~~~~~IvsFDv~~E~f~~i~~P~~~~---~~~~~~~L~~~~G~L~~v~~~~~~~~~~ 70 (129)
T PF08268_consen 1 GICINGVLYWLAWSED-------SDNNVIVSFDVRSEKFRFIKLPEDPY---SSDCSSTLIEYKGKLALVSYNDQGEPDS 70 (129)
T ss_pred CEEECcEEEeEEEECC-------CCCcEEEEEEcCCceEEEEEeeeeec---cccCccEEEEeCCeEEEEEecCCCCcce
Confidence 6899999999998832 34568999999999999999992221 124567888 9999999988 33 46
Q ss_pred EEEEEeccCCCCceeEEEEE
Q 042133 277 IEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 277 ~~iW~l~~~~~~~W~~~~~i 296 (299)
++||+|+|++.++|++.+.+
T Consensus 71 ~~iWvLeD~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 71 IDIWVLEDYEKQEWSKKHIV 90 (129)
T ss_pred EEEEEeeccccceEEEEEEE
Confidence 99999999887799998763
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.47 E-value=5.6e-13 Score=105.32 Aligned_cols=88 Identities=32% Similarity=0.610 Sum_probs=69.3
Q ss_pred ceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE--ECCeEEEEEe--CCCe
Q 042133 202 GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN--LKGCLAIVIL--TPED 276 (299)
Q Consensus 202 ~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~--~~~~ 276 (299)
+|++||.+||++.... ......|++||+.+|+| ..+++|..... ......|. .+|+||++.. ....
T Consensus 1 gV~vnG~~hW~~~~~~------~~~~~~IlsFDl~~E~F~~~~~lP~~~~~---~~~~~~L~~v~~~~L~~~~~~~~~~~ 71 (164)
T PF07734_consen 1 GVFVNGALHWLAYDEN------NDEKDFILSFDLSTEKFGRSLPLPFCNDD---DDDSVSLSVVRGDCLCVLYQCDETSK 71 (164)
T ss_pred CEEECCEEEeeEEecC------CCCceEEEEEeccccccCCEECCCCccCc---cCCEEEEEEecCCEEEEEEeccCCcc
Confidence 6899999999999876 11222799999999999 88899987651 23456665 6889999976 4557
Q ss_pred EEEEEeccCCC-C-ceeEEEEEec
Q 042133 277 IEIWMMKDYDR-K-EWVKEYKITH 298 (299)
Q Consensus 277 ~~iW~l~~~~~-~-~W~~~~~i~~ 298 (299)
++||+|++++. + +|+|..+|+.
T Consensus 72 ~~IWvm~~~~~~~~SWtK~~~i~~ 95 (164)
T PF07734_consen 72 IEIWVMKKYGYGKESWTKLFTIDL 95 (164)
T ss_pred EEEEEEeeeccCcceEEEEEEEec
Confidence 99999997653 3 9999999975
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.42 E-value=2.4e-11 Score=106.06 Aligned_cols=254 Identities=15% Similarity=0.173 Sum_probs=131.1
Q ss_pred CCCCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhhcCCHHHHHHHHhhhccCCCCCCCCceEEEeecCCCCeeeeee
Q 042133 3 VRERPSIPDEIVDEIIIKLP-AKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASASADEDNQILQLTFASKPPFPFHLL 81 (299)
Q Consensus 3 ~~~~~~LP~Dll~~Il~rLp-~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 81 (299)
|+.|++||+|||..|..||| ..+++|+|+|||+||+.+.... + ..+.+. .+.+++ +......++.+
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~------~~~~~~-~~~~~~~~~~~- 67 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRT------RPLILF-NPINPSETLTD- 67 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCccc------cccccc-CcccCCCCccc-
Confidence 46799999999999999998 8899999999999999875310 0 000000 011222 11000111110
Q ss_pred cccCCccccccCCCCccCCCCCcCCeE-EEeeecceEEeeEeC-CcccEEEEcccchhhhcCCCCCCCCCCcce------
Q 042133 82 TLEDGNIIKRSAHPILELPNNIQESNF-ISHSAYGLFCFHTRG-GVGKAYLCNPLRKEVLELPQATTGGSWLDF------ 153 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~GLl~~~~~~-~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~------ 153 (299)
+....... ..++.... ...+. ..++.+|+|.....+ ...++.+.||+++.....|+..........
T Consensus 68 ---~~~~~~~~-~~~ls~~~--~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~ 141 (373)
T PLN03215 68 ---DRSYISRP-GAFLSRAA--FFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREA 141 (373)
T ss_pred ---cccccccc-cceeeeeE--EEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccce
Confidence 00000000 00000000 00000 013567888776322 357899999999997777753321110000
Q ss_pred EEE-eEeCC-------------------CCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEe
Q 042133 154 YAM-GFDGT-------------------TSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWA 212 (299)
Q Consensus 154 ~~l-~~d~~-------------------~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~ 212 (299)
+.+ +.+.. ..+|-|+++. ...+.... .+.|..+...... -...++.+|++|-+
T Consensus 142 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~~~~~~----~~DIi~~kGkfYAv 215 (373)
T PLN03215 142 YQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWD--GNVLKALKQMGYH----FSDIIVHKGQTYAL 215 (373)
T ss_pred EEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeec--CCeeeEccCCCce----eeEEEEECCEEEEE
Confidence 111 11100 0112233332 11111111 4778877542111 23589999999999
Q ss_pred ecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCC--CC-CCccccceeEEE-ECCeEEEEEe--C-------------
Q 042133 213 DDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDF--GS-LSYEHERFVMIN-LKGCLAIVIL--T------------- 273 (299)
Q Consensus 213 ~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~--~~-~~~~~~~~~~l~-~~g~L~~~~~--~------------- 273 (299)
...+. +.++|.+- +.+.+..+.. .. ..+ .....|+ +.|+|++|.. .
T Consensus 216 D~~G~------------l~~i~~~l-~i~~v~~~i~~~~~~g~~--~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~ 280 (373)
T PLN03215 216 DSIGI------------VYWINSDL-EFSRFGTSLDENITDGCW--TGDRRFVECCGELYIVERLPKESTWKRKADGFEY 280 (373)
T ss_pred cCCCe------------EEEEecCC-ceeeecceecccccCCcc--cCceeEEEECCEEEEEEEEccCcccccccccccc
Confidence 66654 77777432 2233322111 11 000 1346788 8999999987 1
Q ss_pred --CCeEEEEEeccCCCCceeEEEEEe
Q 042133 274 --PEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 274 --~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
...++|++++. +.++|+++.+++
T Consensus 281 ~~t~~f~VfklD~-~~~~WveV~sLg 305 (373)
T PLN03215 281 SRTVGFKVYKFDD-ELAKWMEVKTLG 305 (373)
T ss_pred cceeEEEEEEEcC-CCCcEEEecccC
Confidence 13689999974 335999998875
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.05 E-value=1.2e-10 Score=71.65 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 042133 6 RPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAI 47 (299)
Q Consensus 6 ~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~ 47 (299)
|..||+|++.+||+.||++++.+++.|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875443
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.92 E-value=6.9e-10 Score=68.57 Aligned_cols=44 Identities=39% Similarity=0.531 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHH
Q 042133 6 RPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKR 49 (299)
Q Consensus 6 ~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~ 49 (299)
+..||+|++.+||.+|+++++.+++.|||+|++++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56799999999999999999999999999999999999987654
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.83 E-value=2.9e-09 Score=63.32 Aligned_cols=39 Identities=51% Similarity=0.843 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 042133 9 IPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAI 47 (299)
Q Consensus 9 LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~ 47 (299)
||+|++.+||.+|+++++.+++.|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.77 E-value=1.1e-06 Score=82.87 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=106.6
Q ss_pred EEeeecceEEeeEeCC-------cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------Cce
Q 042133 109 ISHSAYGLFCFHTRGG-------VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKR 174 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~-------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~ 174 (299)
-++..+|-|++. ++ ...+..+||.+++|..+|+++ ..+....+..++ -+|.+++ ...
T Consensus 298 ~~a~l~~~IYvi--GG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~~~~~~~~~-----g~IYviGG~~~~~~~~s 368 (557)
T PHA02713 298 ASAIVDNEIIIA--GGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRCRFSLAVID-----DTIYAIGGQNGTNVERT 368 (557)
T ss_pred EEEEECCEEEEE--cCCCCCCCccceEEEEECCCCeEeeCCCCc--chhhceeEEEEC-----CEEEEECCcCCCCCCce
Confidence 345567766665 32 245889999999999999987 333222222222 2555555 146
Q ss_pred EEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccC-----c-------cCCCCccEEEEEECCCCeeee
Q 042133 175 SEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFG-----Q-------RKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 175 ~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~-----~-------~~~~~~~~il~fD~~~~~~~~ 242 (299)
+++|++.++.|..++.+|.... ....+.++|.+|.+.+...... + .+......+.+||+.+++|+.
T Consensus 369 ve~Ydp~~~~W~~~~~mp~~r~--~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 369 IECYTMGDDKWKMLPDMPIALS--SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred EEEEECCCCeEEECCCCCcccc--cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 9999999999999887644322 2357788999999987542100 0 000113469999999999998
Q ss_pred e-CCCCCCCCCccccceeEEE-ECCeEEEEEe-CC-CeE--EEEEeccCCC-CceeEEEEEe
Q 042133 243 T-PTPDFGSLSYEHERFVMIN-LKGCLAIVIL-TP-EDI--EIWMMKDYDR-KEWVKEYKIT 297 (299)
Q Consensus 243 i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~~-~~~--~iW~l~~~~~-~~W~~~~~i~ 297 (299)
+ ++|.... ...+. .+|+|++++. .. ... .+-..+ .+. ++|+.+..++
T Consensus 447 v~~m~~~r~-------~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd-p~~~~~W~~~~~m~ 500 (557)
T PHA02713 447 LPNFWTGTI-------RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYN-TNTYNGWELITTTE 500 (557)
T ss_pred cCCCCcccc-------cCcEEEECCEEEEEeCCCCCCccceeEEEec-CCCCCCeeEccccC
Confidence 8 4443322 24456 9999999987 22 111 233333 233 4799887765
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.73 E-value=1e-06 Score=82.96 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=102.0
Q ss_pred EEEeeecceEEeeEeCC------cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe----------
Q 042133 108 FISHSAYGLFCFHTRGG------VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF---------- 171 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~---------- 171 (299)
.-++..+|-|+.. ++ ...+.++||.|++|..+|+++.. .....+..++ -+|.+++
T Consensus 345 ~~~~~~~g~IYvi--GG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~~-----g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 345 FSLAVIDDTIYAI--GGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVLD-----QYIYIIGGRTEHIDYTS 415 (557)
T ss_pred eeEEEECCEEEEE--CCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccccEEEEC-----CEEEEEeCCCccccccc
Confidence 4556778877666 32 23588999999999999998732 2222111111 1222222
Q ss_pred ---------------CceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECC
Q 042133 172 ---------------GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFK 236 (299)
Q Consensus 172 ---------------~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~ 236 (299)
-..+++|++++++|..++.++... .....+.++|.+|.+.+... .......+.+||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~-----~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKD-----EKNVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCC-----CCccceeEEEecCC
Confidence 146899999999999888663332 23457889999999976532 01112357899999
Q ss_pred C-Ceeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEEeccCCCC--ceeEEE
Q 042133 237 K-EEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMMKDYDRK--EWVKEY 294 (299)
Q Consensus 237 ~-~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l~~~~~~--~W~~~~ 294 (299)
+ ++|+.+ ++|... ....++ .+|+|++++...+.. ..+-|+.. +|..+.
T Consensus 489 ~~~~W~~~~~m~~~r-------~~~~~~~~~~~iyv~Gg~~~~~---~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 489 TYNGWELITTTESRL-------SALHTILHDNTIMMLHCYESYM---LQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCCCeeEccccCccc-------ccceeEEECCEEEEEeeeccee---ehhhcCcccccccchh
Confidence 9 799988 555433 225566 999999998822211 12333333 798754
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.59 E-value=2.2e-06 Score=80.61 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=110.4
Q ss_pred EEEeeecceEEeeEe-C----CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceE
Q 042133 108 FISHSAYGLFCFHTR-G----GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRS 175 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~-~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~ 175 (299)
.-++..+|.|+...- + ..+.+..+||.+++|..+|++. ..+... +++. -..+|.+++ -..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~-~v~~----l~g~iYavGG~dg~~~l~sv 398 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN--TKRSDF-GVAV----LDGKLYAVGGFDGEKSLNSV 398 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc--Cccccc-eeEE----ECCEEEEEeccccccccccE
Confidence 455667777766521 1 1247999999999999999998 322221 1111 123555555 2679
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCcc
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYE 254 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~ 254 (299)
|.|++.++.|..++.++. .......+.++|.+|-+.+... .......+..||+.+++|..+ +++....
T Consensus 399 E~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~-----~~~~l~sve~YDP~t~~W~~~~~M~~~R~---- 467 (571)
T KOG4441|consen 399 ECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDG-----SSNCLNSVECYDPETNTWTLIAPMNTRRS---- 467 (571)
T ss_pred EEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCC-----CccccceEEEEcCCCCceeecCCcccccc----
Confidence 999999999999987644 2233468889999999988654 122446899999999999888 5654432
Q ss_pred ccceeEEE-ECCeEEEEEe-CC-CeE-EEEEeccCCCCceeEEEEE
Q 042133 255 HERFVMIN-LKGCLAIVIL-TP-EDI-EIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 255 ~~~~~~l~-~~g~L~~~~~-~~-~~~-~iW~l~~~~~~~W~~~~~i 296 (299)
...+. ++|+|++++. ++ ..+ .|=..+ ...+.|..+..+
T Consensus 468 ---~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd-p~~~~W~~v~~m 509 (571)
T KOG4441|consen 468 ---GFGVAVLNGKIYVVGGFDGTSALSSVERYD-PETNQWTMVAPM 509 (571)
T ss_pred ---cceEEEECCEEEEECCccCCCccceEEEEc-CCCCceeEcccC
Confidence 24466 9999999988 32 112 122222 223479887544
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.58 E-value=3.6e-06 Score=79.20 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=109.1
Q ss_pred EEEeeecceEEeeEeC----CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--------CceE
Q 042133 108 FISHSAYGLFCFHTRG----GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--------GKRS 175 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--------~~~~ 175 (299)
.-+++++|.++...-. .-..+-.++|.|.+|..++++. ..+..+.+..+ +-+|.+++ -.++
T Consensus 374 ~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--~~r~~~gv~~~-----~g~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--TRRSGHGVAVL-----GGKLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC--cceeeeEEEEE-----CCEEEEEcCcCCCccccceE
Confidence 4456788888766210 1236899999999999999987 22221111111 12344444 1689
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCcc
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYE 254 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~ 254 (299)
+.|++.++.|+.++.++.... ....+..||.+|.+.+... ......+-+||+.+++|..+. ++...
T Consensus 447 e~YDP~t~~W~~~~~M~~~R~--~~g~a~~~~~iYvvGG~~~------~~~~~~VE~ydp~~~~W~~v~~m~~~r----- 513 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPMNTRRS--GFGVAVLNGKIYVVGGFDG------TSALSSVERYDPETNQWTMVAPMTSPR----- 513 (571)
T ss_pred EEEcCCCCceeecCCcccccc--cceEEEECCEEEEECCccC------CCccceEEEEcCCCCceeEcccCcccc-----
Confidence 999999999999998743322 2347888999999988764 233445899999999999993 33332
Q ss_pred ccceeEEE-ECCeEEEEEeC-----CCeEEEEEeccCCCCceeEEEE
Q 042133 255 HERFVMIN-LKGCLAIVILT-----PEDIEIWMMKDYDRKEWVKEYK 295 (299)
Q Consensus 255 ~~~~~~l~-~~g~L~~~~~~-----~~~~~iW~l~~~~~~~W~~~~~ 295 (299)
....+. .+|+|+++... -+.++.| +...++|.....
T Consensus 514 --s~~g~~~~~~~ly~vGG~~~~~~l~~ve~y---dp~~d~W~~~~~ 555 (571)
T KOG4441|consen 514 --SAVGVVVLGGKLYAVGGFDGNNNLNTVECY---DPETDTWTEVTE 555 (571)
T ss_pred --ccccEEEECCEEEEEecccCccccceeEEc---CCCCCceeeCCC
Confidence 235667 99999999882 4455555 233448988654
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=98.57 E-value=2.6e-06 Score=78.90 Aligned_cols=132 Identities=8% Similarity=-0.079 Sum_probs=91.0
Q ss_pred EEeeecceEEeeEeCC---cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-----CceEEEEEc
Q 042133 109 ISHSAYGLFCFHTRGG---VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-----GKRSEIYTL 180 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~---~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-----~~~~~vyss 180 (299)
-..+.+|-+++. .+ ...+..++|.+++|..+|+++ .++....+..++ -+|.+++ ...+++|++
T Consensus 313 ~~v~~~~~iYvi--GG~~~~~sve~ydp~~n~W~~~~~l~--~~r~~~~~~~~~-----g~IYviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 313 SGVPANNKLYVV--GGLPNPTSVERWFHGDAAWVNMPSLL--KPRCNPAVASIN-----NVIYVIGGHSETDTTTEYLLP 383 (480)
T ss_pred eEEEECCEEEEE--CCcCCCCceEEEECCCCeEEECCCCC--CCCcccEEEEEC-----CEEEEecCcCCCCccEEEEeC
Confidence 345678888766 33 245788999999999999988 333332222222 2555554 256899999
Q ss_pred CCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCcccccee
Q 042133 181 GTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHERFV 259 (299)
Q Consensus 181 ~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~ 259 (299)
+++.|..++.++.... ....+.++|.+|.+.+. .-+||+++++|+.++ +|... ...
T Consensus 384 ~~~~W~~~~~m~~~r~--~~~~~~~~~~IYv~GG~--------------~e~ydp~~~~W~~~~~m~~~r-------~~~ 440 (480)
T PHA02790 384 NHDQWQFGPSTYYPHY--KSCALVFGRRLFLVGRN--------------AEFYCESSNTWTLIDDPIYPR-------DNP 440 (480)
T ss_pred CCCEEEeCCCCCCccc--cceEEEECCEEEEECCc--------------eEEecCCCCcEeEcCCCCCCc-------ccc
Confidence 9999999876543222 23467899999988642 568999999999884 43322 224
Q ss_pred EEE-ECCeEEEEEe
Q 042133 260 MIN-LKGCLAIVIL 272 (299)
Q Consensus 260 ~l~-~~g~L~~~~~ 272 (299)
.+. .+|+|++++.
T Consensus 441 ~~~v~~~~IYviGG 454 (480)
T PHA02790 441 ELIIVDNKLLLIGG 454 (480)
T ss_pred EEEEECCEEEEECC
Confidence 556 9999999987
No 13
>PHA03098 kelch-like protein; Provisional
Probab=98.48 E-value=9.9e-06 Score=76.26 Aligned_cols=149 Identities=11% Similarity=0.004 Sum_probs=96.0
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceEEEEEcCCCCceecCCCCCccccC
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRSEIYTLGTSSWREISSVPPEDLDN 198 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~~vyss~~~~W~~~~~~~~~~~~~ 198 (299)
..++.+||.|++|..+|+++ .++..+.....+ -++++++ -..+++|+..+++|+..+..|... .
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~--~~R~~~~~~~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--~ 381 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELI--YPRKNPGVTVFN-----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR--Y 381 (534)
T ss_pred ccEEEEeCCCCeeeECCCCC--cccccceEEEEC-----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC--c
Confidence 36899999999999999887 333332222221 1355554 256899999999999887654322 2
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEe-CC-
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVIL-TP- 274 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~~- 274 (299)
....+.++|.+|.+.+... +......+..||+.+++|..+ ++|.... ..... .+|+|++++. ..
T Consensus 382 ~~~~~~~~~~iYv~GG~~~-----~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-------~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 382 NPCVVNVNNLIYVIGGISK-----NDELLKTVECFSLNTNKWSKGSPLPISHY-------GGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred cceEEEECCEEEEECCcCC-----CCcccceEEEEeCCCCeeeecCCCCcccc-------CceEEEECCEEEEECCccCC
Confidence 3456788999999877432 111234689999999999988 4443321 13344 8999999887 21
Q ss_pred C----eEEEEEeccCCCCceeEEEEE
Q 042133 275 E----DIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 275 ~----~~~iW~l~~~~~~~W~~~~~i 296 (299)
. .-.+|+.+ ...++|+++..+
T Consensus 450 ~~~~~~~~v~~yd-~~~~~W~~~~~~ 474 (534)
T PHA03098 450 DNIKVYNIVESYN-PVTNKWTELSSL 474 (534)
T ss_pred CCCcccceEEEec-CCCCceeeCCCC
Confidence 1 12366665 233489886543
No 14
>PLN02153 epithiospecifier protein
Probab=98.44 E-value=2.4e-05 Score=69.38 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=99.9
Q ss_pred EeeecceEEeeEeCC------cccEEEEcccchhhhcCCCCCCC---CCCcceEEEeEeCCCCCEEEEEEeC--------
Q 042133 110 SHSAYGLFCFHTRGG------VGKAYLCNPLRKEVLELPQATTG---GSWLDFYAMGFDGTTSTYKIVRVFG-------- 172 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~---~~~~~~~~l~~d~~~~~ykvv~~~~-------- 172 (299)
+.+.++.|++. .+ ...+.++||.|++|..++++... ..+..+.+..++ =|+++++.
T Consensus 81 ~~~~~~~iyv~--GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~-----~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 81 MVAVGTKLYIF--GGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE-----NHVYVFGGVSKGGLMK 153 (341)
T ss_pred EEEECCEEEEE--CCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC-----CEEEEECCccCCCccC
Confidence 34556666554 22 24689999999999998865210 112222222111 14444441
Q ss_pred -----ceEEEEEcCCCCceecCCCCC-ccccCCCCceEECCeeEEeecCCCcc--CccCCCCccEEEEEECCCCeeeeeC
Q 042133 173 -----KRSEIYTLGTSSWREISSVPP-EDLDNMSNGVSAYGDMHWADDDHFSF--GQRKGVDNCVIISFDFKKEEFKRTP 244 (299)
Q Consensus 173 -----~~~~vyss~~~~W~~~~~~~~-~~~~~~~~~v~~~G~~yw~~~~~~~~--~~~~~~~~~~il~fD~~~~~~~~i~ 244 (299)
..+++|+..++.|..++.... .........+.++|++|.+.+..... +-........+.+||+.+.+|+.++
T Consensus 154 ~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 154 TPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred CCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Confidence 258899999999998875421 11222234677899999886543210 0000111246899999999999885
Q ss_pred C----CCCCCCCccccceeEEE-ECCeEEEEEeC-C---------Ce--EEEEEeccCCCCceeEEE
Q 042133 245 T----PDFGSLSYEHERFVMIN-LKGCLAIVILT-P---------ED--IEIWMMKDYDRKEWVKEY 294 (299)
Q Consensus 245 ~----P~~~~~~~~~~~~~~l~-~~g~L~~~~~~-~---------~~--~~iW~l~~~~~~~W~~~~ 294 (299)
. |... ...... .+++|+++... . .. -+||+++- ..++|+++.
T Consensus 234 ~~g~~P~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~-~~~~W~~~~ 292 (341)
T PLN02153 234 TTGAKPSAR-------SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT-ETLVWEKLG 292 (341)
T ss_pred ccCCCCCCc-------ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEc-CccEEEecc
Confidence 2 3322 123344 88999999772 1 11 27899873 345898764
No 15
>PHA03098 kelch-like protein; Provisional
Probab=98.43 E-value=1.6e-05 Score=74.84 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=102.6
Q ss_pred EeeecceEEeeEeC----CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC--------ceEEE
Q 042133 110 SHSAYGLFCFHTRG----GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG--------KRSEI 177 (299)
Q Consensus 110 ~~s~~GLl~~~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--------~~~~v 177 (299)
+...+|-+++..-. ....+.++||.|++|..+|+++ .++..+.+..++ -+++.+++ ..+++
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp--~~r~~~~~~~~~-----~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI--FPRYNPCVVNVN-----NLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC--cCCccceEEEEC-----CEEEEECCcCCCCcccceEEE
Confidence 34556666555200 1246889999999999999887 333322222221 14555541 56899
Q ss_pred EEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCcccc
Q 042133 178 YTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHE 256 (299)
Q Consensus 178 yss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~ 256 (299)
|++.++.|..++..|... .....+..+|.+|.+.+.... ........+.+||+.+++|+.++ +|...
T Consensus 411 yd~~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~v~~yd~~~~~W~~~~~~~~~r------- 478 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISH--YGGCAIYHDGKIYVIGGISYI---DNIKVYNIVESYNPVTNKWTELSSLNFPR------- 478 (534)
T ss_pred EeCCCCeeeecCCCCccc--cCceEEEECCEEEEECCccCC---CCCcccceEEEecCCCCceeeCCCCCccc-------
Confidence 999999999887654322 234577889999988765420 00011234999999999999884 33221
Q ss_pred ceeEEE-ECCeEEEEEe-C-CC-eEEEEEeccCCCCceeEEEE
Q 042133 257 RFVMIN-LKGCLAIVIL-T-PE-DIEIWMMKDYDRKEWVKEYK 295 (299)
Q Consensus 257 ~~~~l~-~~g~L~~~~~-~-~~-~~~iW~l~~~~~~~W~~~~~ 295 (299)
....+. .+|+|++++. . .. .=.|+..+ ...+.|..+..
T Consensus 479 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd-~~~~~W~~~~~ 520 (534)
T PHA03098 479 INASLCIFNNKIYVVGGDKYEYYINEIEVYD-DKTNTWTLFCK 520 (534)
T ss_pred ccceEEEECCEEEEEcCCcCCcccceeEEEe-CCCCEEEecCC
Confidence 123445 8999999887 2 11 23566665 23348987654
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=98.42 E-value=1.5e-05 Score=73.99 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=93.9
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe----CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF----GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~----~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
..+..+||.+++|..+|+++ .++....+...+ -+|.+++ ...++.|++.++.|..++.++... ....
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~--~~r~~~~~v~~~-----~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r--~~~~ 357 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMN--SPRLYASGVPAN-----NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR--CNPA 357 (480)
T ss_pred CeEEEEECCCCEEEECCCCC--chhhcceEEEEC-----CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC--cccE
Confidence 35778999999999999987 333322222221 2566665 256899999999999987664322 2345
Q ss_pred ceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEE
Q 042133 202 GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIW 280 (299)
Q Consensus 202 ~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW 280 (299)
.+.++|.+|.+.+... ....+..||+++++|+.++.++... ...... .+|+|++++.. .+++
T Consensus 358 ~~~~~g~IYviGG~~~--------~~~~ve~ydp~~~~W~~~~~m~~~r------~~~~~~~~~~~IYv~GG~---~e~y 420 (480)
T PHA02790 358 VASINNVIYVIGGHSE--------TDTTTEYLLPNHDQWQFGPSTYYPH------YKSCALVFGRRLFLVGRN---AEFY 420 (480)
T ss_pred EEEECCEEEEecCcCC--------CCccEEEEeCCCCEEEeCCCCCCcc------ccceEEEECCEEEEECCc---eEEe
Confidence 7889999999987543 1235788999999999984443322 123445 89999998742 3333
Q ss_pred EeccCCCCceeEEEEE
Q 042133 281 MMKDYDRKEWVKEYKI 296 (299)
Q Consensus 281 ~l~~~~~~~W~~~~~i 296 (299)
. ...++|+.+..+
T Consensus 421 d---p~~~~W~~~~~m 433 (480)
T PHA02790 421 C---ESSNTWTLIDDP 433 (480)
T ss_pred c---CCCCcEeEcCCC
Confidence 2 233478876544
No 17
>PLN02193 nitrile-specifier protein
Probab=98.34 E-value=6.7e-05 Score=69.41 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=102.3
Q ss_pred EeeecceEEeeEeCC------cccEEEEcccchhhhcCCCCCCC-CCCcceEEEeEeCCCCCEEEEEEe-------CceE
Q 042133 110 SHSAYGLFCFHTRGG------VGKAYLCNPLRKEVLELPQATTG-GSWLDFYAMGFDGTTSTYKIVRVF-------GKRS 175 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~-~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~ 175 (299)
+...++.|++. .+ ...++++||.|++|..++++... .++..+.+..+ +-+++++. ...+
T Consensus 224 ~v~~~~~lYvf--GG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-----~~~iYv~GG~~~~~~~~~~ 296 (470)
T PLN02193 224 MVSIGSTLYVF--GGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-----EENVYVFGGVSATARLKTL 296 (470)
T ss_pred EEEECCEEEEE--CCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-----CCEEEEECCCCCCCCcceE
Confidence 34456666554 22 24689999999999999876311 12222222222 12566665 1568
Q ss_pred EEEEcCCCCceecCCCC-CccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCC-CCCCCCc
Q 042133 176 EIYTLGTSSWREISSVP-PEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTP-DFGSLSY 253 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~-~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P-~~~~~~~ 253 (299)
++|+..++.|..++... ..........+.++|++|.+.+... .....+.+||+.+++|+.++.. .....
T Consensus 297 ~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g-------~~~~dv~~yD~~t~~W~~~~~~g~~P~~-- 367 (470)
T PLN02193 297 DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG-------CEVDDVHYYDPVQDKWTQVETFGVRPSE-- 367 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC-------CccCceEEEECCCCEEEEeccCCCCCCC--
Confidence 89999999999876531 1111122346678999998876432 1234699999999999988431 11111
Q ss_pred cccceeEEE-ECCeEEEEEeC-C---------CeE--EEEEeccCCCCceeEEEEE
Q 042133 254 EHERFVMIN-LKGCLAIVILT-P---------EDI--EIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 254 ~~~~~~~l~-~~g~L~~~~~~-~---------~~~--~iW~l~~~~~~~W~~~~~i 296 (299)
......+ .+++|+++... . ..+ ++|.++- ...+|.++..+
T Consensus 368 --R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~-~t~~W~~~~~~ 420 (470)
T PLN02193 368 --RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT-ETLQWERLDKF 420 (470)
T ss_pred --cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc-CcCEEEEcccC
Confidence 1223445 89999988772 1 122 5899883 34489987654
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.32 E-value=7.4e-05 Score=66.37 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=97.9
Q ss_pred eeecceEEeeEeCCcccEEEEcc--cchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC-------------ceE
Q 042133 111 HSAYGLFCFHTRGGVGKAYLCNP--LRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG-------------KRS 175 (299)
Q Consensus 111 ~s~~GLl~~~~~~~~~~~~V~NP--~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-------------~~~ 175 (299)
+..++-|++..-.....+++.++ .+++|..+|+++.. .+........+ -+|.+++. ..+
T Consensus 14 ~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 14 AIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAID-----GKLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred EEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC-CcccceEEEEC-----CEEEEEeCCCCCCCCCcceecccE
Confidence 34556665541011346777774 67889999987621 11111111111 13444431 358
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCce-EECCeeEEeecCCCcc-----------CccC-----------------CCC
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGV-SAYGDMHWADDDHFSF-----------GQRK-----------------GVD 226 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v-~~~G~~yw~~~~~~~~-----------~~~~-----------------~~~ 226 (299)
+.|++.++.|+.++...+... .....+ .++|++|.+.+..... +... ...
T Consensus 88 ~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (346)
T TIGR03547 88 YRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFW 166 (346)
T ss_pred EEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCc
Confidence 899999999999874221111 111233 5799999987754200 0000 001
Q ss_pred ccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEe-C---CCeEEEEEec-cCCCCceeEEEEE
Q 042133 227 NCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVIL-T---PEDIEIWMMK-DYDRKEWVKEYKI 296 (299)
Q Consensus 227 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~---~~~~~iW~l~-~~~~~~W~~~~~i 296 (299)
...+.+||+.+++|+.+ ++|.... ....+. .+|+|+++.. . ....++|..+ +.+..+|.++..+
T Consensus 167 ~~~v~~YDp~t~~W~~~~~~p~~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 167 NKNVLSYDPSTNQWRNLGENPFLGT------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred cceEEEEECCCCceeECccCCCCcC------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 24699999999999998 4553221 124455 8999999987 2 2234566654 1233489887655
No 19
>PLN02153 epithiospecifier protein
Probab=98.27 E-value=0.00017 Score=63.94 Aligned_cols=161 Identities=8% Similarity=-0.000 Sum_probs=92.9
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCC-c-ceEEEeEeCCCCCEEEEEEe-------CceEEEEEcCCCCceecCCCCC---
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSW-L-DFYAMGFDGTTSTYKIVRVF-------GKRSEIYTLGTSSWREISSVPP--- 193 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~-~-~~~~l~~d~~~~~ykvv~~~-------~~~~~vyss~~~~W~~~~~~~~--- 193 (299)
..++++|+.+++|..+|+....... . .+....++ -+|++++ -..+++|++.++.|+.++....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-----~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 124 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-----TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGG 124 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-----CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCC
Confidence 4689999999999998865421111 1 11111221 2556555 1468999999999998765310
Q ss_pred ccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe
Q 042133 194 EDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 194 ~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~ 272 (299)
.........+..+|++|.+.+....-.......-..+.+||+++++|..++.+..... ......+. .+|+++++..
T Consensus 125 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~---~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE---KRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC---CCCcceEEEECCeEEEEec
Confidence 1111233567889999988776420000001112358899999999998854321110 01223445 8999998864
Q ss_pred -CC----------CeEEEEEeccCCCCceeEEEE
Q 042133 273 -TP----------EDIEIWMMKDYDRKEWVKEYK 295 (299)
Q Consensus 273 -~~----------~~~~iW~l~~~~~~~W~~~~~ 295 (299)
.. ..-+|++++ ....+|+++..
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd-~~~~~W~~~~~ 234 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFD-PASGKWTEVET 234 (341)
T ss_pred cccccccCCccceecCceEEEE-cCCCcEEeccc
Confidence 10 012455554 23348998754
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.22 E-value=6.3e-05 Score=66.17 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=89.4
Q ss_pred EEeeecceEEeeEeC----CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC------ceEEEE
Q 042133 109 ISHSAYGLFCFHTRG----GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG------KRSEIY 178 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~------~~~~vy 178 (299)
.....+|.|++..-. ....+.++||.|++|..+|+++.. .+.......++ =+|.+++. ..+++|
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~-----~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQ-----NELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEEC-----CEEEEEcCCCCccccceEEE
Confidence 344567777665200 124799999999999999876521 12222222221 14555541 346899
Q ss_pred EcCCCCceecCCCCCc--cc-cCCCC-ceEECCeeEEeecCCCc-c----Ccc---------------------CCCCcc
Q 042133 179 TLGTSSWREISSVPPE--DL-DNMSN-GVSAYGDMHWADDDHFS-F----GQR---------------------KGVDNC 228 (299)
Q Consensus 179 ss~~~~W~~~~~~~~~--~~-~~~~~-~v~~~G~~yw~~~~~~~-~----~~~---------------------~~~~~~ 228 (299)
++.+++|+.++.++.. .. ..... .+..+|.+|.+.+.... + ... ...-..
T Consensus 192 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (323)
T TIGR03548 192 SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNR 271 (323)
T ss_pred ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCc
Confidence 9999999998764211 11 11122 33447899988776420 0 000 000124
Q ss_pred EEEEEECCCCeeeeeC-CCCCCCCCccccceeEEE-ECCeEEEEEe
Q 042133 229 VIISFDFKKEEFKRTP-TPDFGSLSYEHERFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~l~-~~g~L~~~~~ 272 (299)
.+.+||+.+++|+.++ +|.... ....++ .+|+|+++..
T Consensus 272 ~v~~yd~~~~~W~~~~~~p~~~r------~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 272 KILIYNVRTGKWKSIGNSPFFAR------CGAALLLTGNNIFSING 311 (323)
T ss_pred eEEEEECCCCeeeEccccccccc------CchheEEECCEEEEEec
Confidence 6999999999999984 553221 224456 9999999986
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.17 E-value=0.001 Score=59.12 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSL 251 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~ 251 (299)
..+++|++.++.|+.++.+|... ......+.++|++|.+.+... ............+|.++++|..+ ++|.....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLG-TAGSAIVHKGNKLLLINGEIK---PGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccCCCCc-CCCceEEEECCEEEEEeeeeC---CCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 46899999999999987654321 123346778999999877542 00011112334445567799887 55543210
Q ss_pred Ccccc-ceeEEE-ECCeEEEEEe
Q 042133 252 SYEHE-RFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 252 ~~~~~-~~~~l~-~~g~L~~~~~ 272 (299)
.... .....+ .+|+|+++..
T Consensus 244 -~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 244 -SQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred -ccccccEEeeeEECCEEEEeec
Confidence 0001 123345 8999999976
No 22
>PLN02193 nitrile-specifier protein
Probab=98.17 E-value=0.00013 Score=67.42 Aligned_cols=155 Identities=8% Similarity=0.016 Sum_probs=95.1
Q ss_pred cEEEEcccchhhhcCCCCCCCCC-Cc-ceEEEeEeCCCCCEEEEEEe-------CceEEEEEcCCCCceecCCCCC-ccc
Q 042133 127 KAYLCNPLRKEVLELPQATTGGS-WL-DFYAMGFDGTTSTYKIVRVF-------GKRSEIYTLGTSSWREISSVPP-EDL 196 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~~~-~~-~~~~l~~d~~~~~ykvv~~~-------~~~~~vyss~~~~W~~~~~~~~-~~~ 196 (299)
.++++|+.+++|..+|+...... .. .+.+..++ -+++++. -..+++|++.++.|+.++.... ...
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC-----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 58999999999998775421111 11 11112221 1455554 1568999999999998875411 111
Q ss_pred cCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe-C-
Q 042133 197 DNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL-T- 273 (299)
Q Consensus 197 ~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~- 273 (299)
......+.+++++|.+.+... ......+.+||+.+.+|+.++.|..... ......+. .+|+++++.. .
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~------~~~~~~~~~yd~~t~~W~~~~~~~~~~~---~R~~~~~~~~~gkiyviGG~~g 339 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSA------TARLKTLDSYNIVDKKWFHCSTPGDSFS---IRGGAGLEVVQGKVWVVYGFNG 339 (470)
T ss_pred ccceEEEEECCEEEEECCCCC------CCCcceEEEEECCCCEEEeCCCCCCCCC---CCCCcEEEEECCcEEEEECCCC
Confidence 122346678999999877543 1122458899999999999876532211 12224455 8999998877 2
Q ss_pred CCeEEEEEeccCCCCceeEEEEE
Q 042133 274 PEDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 274 ~~~~~iW~l~~~~~~~W~~~~~i 296 (299)
...-++|+++- ..++|.++..+
T Consensus 340 ~~~~dv~~yD~-~t~~W~~~~~~ 361 (470)
T PLN02193 340 CEVDDVHYYDP-VQDKWTQVETF 361 (470)
T ss_pred CccCceEEEEC-CCCEEEEeccC
Confidence 22346777763 34589987643
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.16 E-value=0.00016 Score=64.94 Aligned_cols=173 Identities=15% Similarity=0.068 Sum_probs=97.7
Q ss_pred eeecceEEeeEeCCcccEEEEccc--chhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------------CceE
Q 042133 111 HSAYGLFCFHTRGGVGKAYLCNPL--RKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------------GKRS 175 (299)
Q Consensus 111 ~s~~GLl~~~~~~~~~~~~V~NP~--T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------------~~~~ 175 (299)
+..++-|++..-.....+++.++. +++|..+|+++.. .+........+ -+|.+++ -..+
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~-----~~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFID-----GKLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEEC-----CEEEEEcCCCCCCCCCceeEcccE
Confidence 445666655421123456777765 5789999877521 11111111111 1233332 1358
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCceE-ECCeeEEeecCCCc-cC-------------------------ccCC--CC
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGVS-AYGDMHWADDDHFS-FG-------------------------QRKG--VD 226 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v~-~~G~~yw~~~~~~~-~~-------------------------~~~~--~~ 226 (299)
++|+..++.|+.++...+... .....+. .+|++|.+.+.... +. .... ..
T Consensus 109 ~~YD~~~n~W~~~~~~~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (376)
T PRK14131 109 YKYDPKTNSWQKLDTRSPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFF 187 (376)
T ss_pred EEEeCCCCEEEeCCCCCCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCc
Confidence 899999999999874311211 1222344 79999999876420 00 0000 01
Q ss_pred ccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEe----CCCeEEEEEecc-CCCCceeEEEEE
Q 042133 227 NCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVIL----TPEDIEIWMMKD-YDRKEWVKEYKI 296 (299)
Q Consensus 227 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~----~~~~~~iW~l~~-~~~~~W~~~~~i 296 (299)
...+..||+.+++|..+ ++|.... ....++ .+++|+++.. .....++|..+- .+..+|+++..+
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~~~------~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFLGT------AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCCCC------CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 24699999999999988 4553222 123445 8999999987 234566776542 233489987665
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.12 E-value=0.00028 Score=62.05 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=80.4
Q ss_pred ccEEEEcccchhh----hcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceEEEEEcCCCCceecCCCCCc
Q 042133 126 GKAYLCNPLRKEV----LELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRSEIYTLGTSSWREISSVPPE 194 (299)
Q Consensus 126 ~~~~V~NP~T~~~----~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~~vyss~~~~W~~~~~~~~~ 194 (299)
..+..+|+.+++| ..+|+++ .....+.+..++ -+|.++. ...+++|++.++.|..++..|..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp--~~~~~~~~~~~~-----~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 160 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLP--FTFENGSACYKD-----GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE 160 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCC--cCccCceEEEEC-----CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC
Confidence 4688899999987 6778776 333222222222 1455554 25789999999999998765432
Q ss_pred cccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCC-CCCCCCCccccceeEEE-ECCeEEEEEe
Q 042133 195 DLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPT-PDFGSLSYEHERFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 195 ~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~-P~~~~~~~~~~~~~~l~-~~g~L~~~~~ 272 (299)
.. .....+.++|.+|.+.+... .....+.+||+++++|+.++. +...... .......+. .+|+|+++..
T Consensus 161 ~r-~~~~~~~~~~~iYv~GG~~~-------~~~~~~~~yd~~~~~W~~~~~~~~~~~p~-~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 161 PR-VQPVCVKLQNELYVFGGGSN-------IAYTDGYKYSPKKNQWQKVADPTTDSEPI-SLLGAASIKINESLLLCIGG 231 (323)
T ss_pred CC-CcceEEEECCEEEEEcCCCC-------ccccceEEEecCCCeeEECCCCCCCCCce-eccceeEEEECCCEEEEECC
Confidence 21 22335678999999887542 111236899999999998843 2111100 001223345 6789888876
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.12 E-value=7.9e-05 Score=63.56 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=38.5
Q ss_pred CCCC----HHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHH
Q 042133 7 PSIP----DEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIK 48 (299)
Q Consensus 7 ~~LP----~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~~ 48 (299)
..|| +++.+.||+.|...+|..|..|||+|+++++++..-++
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 4688 99999999999999999999999999999999886654
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.05 E-value=0.0018 Score=58.24 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSL 251 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~ 251 (299)
..+++|+..++.|..++..|... ......+.++|++|.+.+... ............||+++.+|..+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~---~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLG-TAGSAVVIKGNKLWLINGEIK---PGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCC-CCcceEEEECCEEEEEeeeEC---CCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 36899999999999887654321 222346778999999987532 11122344566778899999887 45543211
Q ss_pred Ccccc-ceeEEE-ECCeEEEEEe
Q 042133 252 SYEHE-RFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 252 ~~~~~-~~~~l~-~~g~L~~~~~ 272 (299)
..... ...... .+|+|+++..
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred CcCCccceEeceeECCEEEEeec
Confidence 00001 112234 8999998876
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.89 E-value=0.00027 Score=58.50 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCceecCCC--CCccccCCCCceEECCeeEEeecCCCccCc---cCCCCccEEEEEECCCCeeeeeC-CC
Q 042133 173 KRSEIYTLGTSSWREISSV--PPEDLDNMSNGVSAYGDMHWADDDHFSFGQ---RKGVDNCVIISFDFKKEEFKRTP-TP 246 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~--~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~---~~~~~~~~il~fD~~~~~~~~i~-~P 246 (299)
..+++++..|..|+.+... |+..... ..++.++|.+|-..+..++.++ ........|++||++|+.|..-+ -+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDF-HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhh-hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 6778888899999999876 4444433 4677888999999988876554 22345668999999999997652 11
Q ss_pred CCCCCCccccceeEEE-ECCeEEEEEeC-----CCeEEEEEeccCCCCceeEEEE
Q 042133 247 DFGSLSYEHERFVMIN-LKGCLAIVILT-----PEDIEIWMMKDYDRKEWVKEYK 295 (299)
Q Consensus 247 ~~~~~~~~~~~~~~l~-~~g~L~~~~~~-----~~~~~iW~l~~~~~~~W~~~~~ 295 (299)
.-... ....+-. ++|++++.... ...=++|..+- ....|.++..
T Consensus 236 ~~P~G----RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP-~t~~W~~I~~ 285 (392)
T KOG4693|consen 236 MKPGG----RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP-KTSMWSVISV 285 (392)
T ss_pred cCCCc----ccccceEEEcceEEEecccchhhhhhhcceeeccc-ccchheeeec
Confidence 11111 1223444 99999999883 33446788762 3337887653
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-05 Score=67.88 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHH
Q 042133 5 ERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAF 45 (299)
Q Consensus 5 ~~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F 45 (299)
.|..||||+++.||+.|+.++|.++..|||+|+++-++.+.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 37899999999999999999999999999999999877654
No 29
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.73 E-value=0.0011 Score=56.34 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHhcCC-----hhhhhhhhccchhhHhhcCCHHHHHHHHh
Q 042133 6 RPSIPDEIVDEIIIKLP-----AKSLMRFRCVSKIWLHKIDSLAFAIKRSA 51 (299)
Q Consensus 6 ~~~LP~Dll~~Il~rLp-----~~~l~r~r~VcK~W~~li~~~~F~~~~~~ 51 (299)
+..||||+|.+||.++= .+++.++.+|||.|+-...+|.|-++.+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 35799999999998743 59999999999999999999999876544
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.60 E-value=0.2 Score=46.66 Aligned_cols=157 Identities=14% Similarity=-0.018 Sum_probs=93.2
Q ss_pred cEEEEcccchhhhcCCCCCCC-CCCcceEEEeEeCCCCCEEEEEEe--------CceEEEEEcCCCCceecCCCCCccc-
Q 042133 127 KAYLCNPLRKEVLELPQATTG-GSWLDFYAMGFDGTTSTYKIVRVF--------GKRSEIYTLGTSSWREISSVPPEDL- 196 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~-~~~~~~~~l~~d~~~~~ykvv~~~--------~~~~~vyss~~~~W~~~~~~~~~~~- 196 (299)
.+...|+.|++|..+.+.... ..+..+.+..++ =|++.++ ...++||+..+..|..+........
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-----~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-----TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEEC-----CEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 799999999999988766531 222233333332 1455554 2689999999999999887622211
Q ss_pred cCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe-CC
Q 042133 197 DNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL-TP 274 (299)
Q Consensus 197 ~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~~ 274 (299)
......+.+++.++.+.+... ....-.-+..||+.+.+|..++.=.... .......++ .+..+++++. ..
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~-----~~~~l~D~~~ldl~~~~W~~~~~~g~~p---~~R~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDD-----GDVYLNDVHILDLSTWEWKLLPTGGDLP---SPRSGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred CCCceEEEECCeEEEEecccc-----CCceecceEeeecccceeeeccccCCCC---CCcceeeeEEECCEEEEEcCCcc
Confidence 223345555555555444431 1223345899999998887432111111 012334555 7777777777 22
Q ss_pred ----CeEEEEEeccCCCCceeEEEEEe
Q 042133 275 ----EDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 275 ----~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
..-++|.|... +..|.++...+
T Consensus 287 ~~~~~l~~~~~l~~~-~~~w~~~~~~~ 312 (482)
T KOG0379|consen 287 PKQEPLGDLYGLDLE-TLVWSKVESVG 312 (482)
T ss_pred ccccccccccccccc-ccceeeeeccc
Confidence 45678888743 34888876543
No 31
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.93 E-value=0.37 Score=40.69 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=88.3
Q ss_pred EEEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe---CceEEEEEcCCCC
Q 042133 108 FISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF---GKRSEIYTLGTSS 184 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~---~~~~~vyss~~~~ 184 (299)
-++..-+|=|-..+ -....+...||.++.-.++|.+... ....-.+..|+... +.+. ...++-|++.+.+
T Consensus 193 Gi~atpdGsvwyas-lagnaiaridp~~~~aev~p~P~~~--~~gsRriwsdpig~----~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 193 GICATPDGSVWYAS-LAGNAIARIDPFAGHAEVVPQPNAL--KAGSRRIWSDPIGR----AWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ceEECCCCcEEEEe-ccccceEEcccccCCcceecCCCcc--cccccccccCccCc----EEEeccCCceeeEeCccccc
Confidence 56677777776664 3366788899999988888877621 11111122222211 1111 4667888998888
Q ss_pred ceecCCCCCccccCCCCceEECCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-
Q 042133 185 WREISSVPPEDLDNMSNGVSAYGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN- 262 (299)
Q Consensus 185 W~~~~~~~~~~~~~~~~~v~~~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~- 262 (299)
|+.-... . .......+++|.. .-|+..-+. ..|..||.++++|+++++|.... .+..+.
T Consensus 266 W~eypLP--g-s~arpys~rVD~~grVW~sea~a----------gai~rfdpeta~ftv~p~pr~n~------gn~ql~g 326 (353)
T COG4257 266 WIEYPLP--G-SKARPYSMRVDRHGRVWLSEADA----------GAIGRFDPETARFTVLPIPRPNS------GNIQLDG 326 (353)
T ss_pred ceeeeCC--C-CCCCcceeeeccCCcEEeecccc----------CceeecCcccceEEEecCCCCCC------CceeccC
Confidence 9876542 1 1112346777653 556644443 47999999999999999997643 345666
Q ss_pred ECCeEEEEEeCCCeE
Q 042133 263 LKGCLAIVILTPEDI 277 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~ 277 (299)
..|++.+.......+
T Consensus 327 r~ge~W~~e~gvd~l 341 (353)
T COG4257 327 RPGELWFTEAGVDAL 341 (353)
T ss_pred CCCceeecccCccee
Confidence 667766554433333
No 32
>PF13964 Kelch_6: Kelch motif
Probab=95.80 E-value=0.032 Score=34.13 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCC
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTP 246 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P 246 (299)
...+.++|.+|.+.+... .......+..||+++++|+.+ ++|
T Consensus 5 ~s~v~~~~~iyv~GG~~~-----~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDN-----SGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CEEEEECCEEEEECCCCC-----CCCccccEEEEcCCCCcEEECCCCC
Confidence 357889999999988764 134456899999999999999 444
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.17 E-value=0.98 Score=42.12 Aligned_cols=154 Identities=8% Similarity=-0.064 Sum_probs=91.3
Q ss_pred cEEEEcccchhhhcCCCCCCCCCC-cceEEEeEeCCCCCEEEEEEe--C------ceEEEEEcCCCCceecCCCCC-ccc
Q 042133 127 KAYLCNPLRKEVLELPQATTGGSW-LDFYAMGFDGTTSTYKIVRVF--G------KRSEIYTLGTSSWREISSVPP-EDL 196 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~l~~d~~~~~ykvv~~~--~------~~~~vyss~~~~W~~~~~~~~-~~~ 196 (299)
.++|+|-.+..|............ ..+.....+ =+++.++ . ..++.|+..|+.|........ ...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-----~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~ 163 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-----DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPP 163 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC-----CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCC
Confidence 599999999888765443311111 111111111 2444444 1 488999999999998876522 222
Q ss_pred cCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe-C-
Q 042133 197 DNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL-T- 273 (299)
Q Consensus 197 ~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~- 273 (299)
......+.++.++|...+.+. ....-.-+.+||+++.+|..+........ ........ .+++++++.. .
T Consensus 164 r~~Hs~~~~g~~l~vfGG~~~-----~~~~~ndl~i~d~~~~~W~~~~~~g~~P~---pR~gH~~~~~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 164 RAGHSATVVGTKLVVFGGIGG-----TGDSLNDLHIYDLETSTWSELDTQGEAPS---PRYGHAMVVVGNKLLVFGGGDD 235 (482)
T ss_pred cccceEEEECCEEEEECCccC-----cccceeeeeeeccccccceecccCCCCCC---CCCCceEEEECCeEEEEecccc
Confidence 233456666777777766654 11145679999999999999854432221 02234444 8899998887 2
Q ss_pred --CCeEEEEEeccCCCCceeEEE
Q 042133 274 --PEDIEIWMMKDYDRKEWVKEY 294 (299)
Q Consensus 274 --~~~~~iW~l~~~~~~~W~~~~ 294 (299)
...=++|.|+-.. .+|.++.
T Consensus 236 ~~~~l~D~~~ldl~~-~~W~~~~ 257 (482)
T KOG0379|consen 236 GDVYLNDVHILDLST-WEWKLLP 257 (482)
T ss_pred CCceecceEeeeccc-ceeeecc
Confidence 2233788887322 3777544
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.02 E-value=1 Score=40.16 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=86.0
Q ss_pred cEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------------CceEEEEEcCCCCceecCCC-C
Q 042133 127 KAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------------GKRSEIYTLGTSSWREISSV-P 192 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------------~~~~~vyss~~~~W~~~~~~-~ 192 (299)
.+|++|--+.+|+.+-.+....++..+-+.+ -++. .+..++ -..+.+|+..++.|..+... .
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va-~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVA-VPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEE-eccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 6899999999998763222112222221111 1111 111111 14567899999999998875 2
Q ss_pred CccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEE
Q 042133 193 PEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVI 271 (299)
Q Consensus 193 ~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~ 271 (299)
+.... ...-|.....+.-..+-.+ ..+.-.+-.-+.+||+++=+|+.+..+-.... ...++...+ -+|.++|-.
T Consensus 175 PS~RS-GHRMvawK~~lilFGGFhd--~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt--pRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 175 PSPRS-GHRMVAWKRQLILFGGFHD--SNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT--PRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred CCCCc-cceeEEeeeeEEEEcceec--CCCceEEeeeeEEEeccceeeeeccCCCCCCC--CCCcceEEecCCCcEEEEc
Confidence 22222 1223333333222222111 01112233358999999999999976542111 112333334 588888776
Q ss_pred e------------CCCeEEEEEeccCC---CC-ceeEEEEEec
Q 042133 272 L------------TPEDIEIWMMKDYD---RK-EWVKEYKITH 298 (299)
Q Consensus 272 ~------------~~~~~~iW~l~~~~---~~-~W~~~~~i~~ 298 (299)
. +...-++|.|+-.. ++ .|.++.-+++
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~ 292 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV 292 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC
Confidence 5 14456899996432 23 7888776654
No 35
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.93 E-value=0.53 Score=41.94 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCceecCCC-CCccccCCCCceEEC-CeeEEeecCCCccCccCC---CCccEEEEEECCCCeeeeeCCCC
Q 042133 173 KRSEIYTLGTSSWREISSV-PPEDLDNMSNGVSAY-GDMHWADDDHFSFGQRKG---VDNCVIISFDFKKEEFKRTPTPD 247 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~-~~~~~~~~~~~v~~~-G~~yw~~~~~~~~~~~~~---~~~~~il~fD~~~~~~~~i~~P~ 247 (299)
..+.+|+.+++.|+.+..+ ++..... .+.|.+- |.+|.. +... ...+. ..---+-.||+.+++|..+..+-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRss-hq~va~~s~~l~~f-GGEf--aSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSS-HQAVAVPSNILWLF-GGEF--ASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcc-ceeEEeccCeEEEe-cccc--CCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 4578899999999998876 2222322 3455554 644443 3322 11111 11113789999999999998886
Q ss_pred CCCCCccccceeEEEECCeEEEEEe--CCCe-----EEEEEeccCCCCceeEEE
Q 042133 248 FGSLSYEHERFVMINLKGCLAIVIL--TPED-----IEIWMMKDYDRKEWVKEY 294 (299)
Q Consensus 248 ~~~~~~~~~~~~~l~~~g~L~~~~~--~~~~-----~~iW~l~~~~~~~W~~~~ 294 (299)
.... ..+..++.+..+|.+... +.+. =+||+++- +.-.|.++.
T Consensus 174 ~PS~---RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL-dtykW~Kle 223 (521)
T KOG1230|consen 174 GPSP---RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL-DTYKWSKLE 223 (521)
T ss_pred CCCC---CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec-cceeeeecc
Confidence 5543 123334448999998877 2111 15566542 112698864
No 36
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.77 E-value=0.36 Score=36.28 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=50.1
Q ss_pred EEEEEECCCC--eeeeeCCCCCCCCCccc-------cceeEEE-ECCeEEEEEe--C--------CCeEEEEEeccC--C
Q 042133 229 VIISFDFKKE--EFKRTPTPDFGSLSYEH-------ERFVMIN-LKGCLAIVIL--T--------PEDIEIWMMKDY--D 286 (299)
Q Consensus 229 ~il~fD~~~~--~~~~i~~P~~~~~~~~~-------~~~~~l~-~~g~L~~~~~--~--------~~~~~iW~l~~~--~ 286 (299)
.|+..|+-++ .++.|++|......... .....++ .+|+|-++.. . ...+..|.|... +
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5899999876 77888999766431111 1245667 8999999887 2 336999999874 3
Q ss_pred CCceeEEEEEec
Q 042133 287 RKEWVKEYKITH 298 (299)
Q Consensus 287 ~~~W~~~~~i~~ 298 (299)
..+|.+.+++..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 349999998763
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.34 E-value=0.084 Score=31.61 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=33.4
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCC
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTP 246 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P 246 (299)
...+.++|.+|.+.+... .......+..||+.+++|..+ ++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDG-----NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBES-----TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecc-----cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 357889999999988764 345566899999999999987 443
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.33 E-value=3.7 Score=38.79 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 042133 5 ERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAI 47 (299)
Q Consensus 5 ~~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~ 47 (299)
-+..||.++...||..|+.+++.+++.||+.|+.++.+.....
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 4568999999999999999999999999999999998776655
No 39
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=94.11 E-value=0.84 Score=38.36 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=78.2
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCC-cceEEE-------eEeCCCCC---EEEEEEe-CceEEEEEcCCCCceecCCCCC
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSW-LDFYAM-------GFDGTTST---YKIVRVF-GKRSEIYTLGTSSWREISSVPP 193 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~l-------~~d~~~~~---ykvv~~~-~~~~~vyss~~~~W~~~~~~~~ 193 (299)
....+.|-.|..|+.+-.-.....+ .++.+. .|....++ |+-..-. ..++.+++..|+.|..-...+.
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 4688999999999987533311111 122111 12222222 2211111 3788899999999976544311
Q ss_pred ccccC-CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC----CCCCCCCCccccceeEEEECCeEE
Q 042133 194 EDLDN-MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP----TPDFGSLSYEHERFVMINLKGCLA 268 (299)
Q Consensus 194 ~~~~~-~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~l~~~g~L~ 268 (299)
....- ..+...-||++|...+.....+ ..-.-+..||+.+..|+.|. .|.... ....++.+||++
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln----~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR------RqC~~v~g~kv~ 306 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGTLN----VHFNDLYCFDPKTSMWSVISVRGKYPSARR------RQCSVVSGGKVY 306 (392)
T ss_pred CCCcccccceEEEcceEEEecccchhhh----hhhcceeecccccchheeeeccCCCCCccc------ceeEEEECCEEE
Confidence 11111 1234556899998876653211 11124889999999999994 343322 234445799999
Q ss_pred EEEe
Q 042133 269 IVIL 272 (299)
Q Consensus 269 ~~~~ 272 (299)
+...
T Consensus 307 LFGG 310 (392)
T KOG4693|consen 307 LFGG 310 (392)
T ss_pred EecC
Confidence 9877
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.04 E-value=0.19 Score=30.48 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=33.3
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCC
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTP 246 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P 246 (299)
...+.++|++|.+.+... .........+-.||+++.+|+.++.+
T Consensus 5 hs~~~~~~kiyv~GG~~~---~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGT---DNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCccc---CCCCcccceeEEEECCCCEEeecCCC
Confidence 457889999999988811 12345666799999999999988543
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.87 E-value=8.7 Score=34.09 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=79.8
Q ss_pred EEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe------Cc------eEE
Q 042133 109 ISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF------GK------RSE 176 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~------~~------~~~ 176 (299)
+.+-.+.-|+.. +.....+|+++.|......|.+. .+....+.+.. . -++.++. .. .+|
T Consensus 71 F~al~gskIv~~--d~~~~t~vyDt~t~av~~~P~l~--~pk~~pisv~V---G--~~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 71 FFALHGSKIVAV--DQSGRTLVYDTDTRAVATGPRLH--SPKRCPISVSV---G--DKLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred EEEecCCeEEEE--cCCCCeEEEECCCCeEeccCCCC--CCCcceEEEEe---C--CeEEEeeccCccccccCccceeEE
Confidence 333344556655 55677999999999999888876 32222222222 1 1244443 00 555
Q ss_pred EEEc----------CCCCceecCCCCCccccC-----CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeee
Q 042133 177 IYTL----------GTSSWREISSVPPEDLDN-----MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK 241 (299)
Q Consensus 177 vyss----------~~~~W~~~~~~~~~~~~~-----~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~ 241 (299)
+++- ++-+|+.++.+|...... -...+++||.--|+...+. ...-.+||+++.+|+
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~---------~~GTysfDt~~~~W~ 212 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR---------RWGTYSFDTESHEWR 212 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC---------ceEEEEEEcCCccee
Confidence 6522 223566655432211111 1122333787777754431 024899999999999
Q ss_pred ee---CCCCCCCCCccccc--eeEEE-EC--CeEEEEEe
Q 042133 242 RT---PTPDFGSLSYEHER--FVMIN-LK--GCLAIVIL 272 (299)
Q Consensus 242 ~i---~~P~~~~~~~~~~~--~~~l~-~~--g~L~~~~~ 272 (299)
.. .||......|.... .+.|. .+ |.||.+..
T Consensus 213 ~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv 251 (342)
T PF07893_consen 213 KHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDV 251 (342)
T ss_pred eccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEec
Confidence 88 78977654333333 33444 33 37776666
No 42
>PF13964 Kelch_6: Kelch motif
Probab=90.53 E-value=0.32 Score=29.58 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=19.2
Q ss_pred cccEEEEcccchhhhcCCCCC
Q 042133 125 VGKAYLCNPLRKEVLELPQAT 145 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~ 145 (299)
...+.++||.|++|..+|+++
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cccEEEEcCCCCcEEECCCCC
Confidence 468999999999999999987
No 43
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.28 E-value=6.3 Score=33.25 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=55.8
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCC---C--ccccceeEEE-ECCeEEEEE
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSL---S--YEHERFVMIN-LKGCLAIVI 271 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~---~--~~~~~~~~l~-~~g~L~~~~ 271 (299)
++.-|+.||.+|+-..... .|+.||+.+++.. ...+|..... . +.....+.+. .+..|-++-
T Consensus 71 GtG~vVYngslYY~~~~s~-----------~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSR-----------NIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred cCCeEEECCcEEEEecCCc-----------eEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 4567788999999887654 7999999999888 7788865533 1 2222356677 888888887
Q ss_pred e---CCCeEEEEEeccC
Q 042133 272 L---TPEDIEIWMMKDY 285 (299)
Q Consensus 272 ~---~~~~~~iW~l~~~ 285 (299)
. ..+.+.|-.|+..
T Consensus 140 at~~~~g~ivvskld~~ 156 (250)
T PF02191_consen 140 ATEDNNGNIVVSKLDPE 156 (250)
T ss_pred ecCCCCCcEEEEeeCcc
Confidence 7 3457999998753
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.24 E-value=0.23 Score=44.31 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCH
Q 042133 7 PSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSL 43 (299)
Q Consensus 7 ~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~ 43 (299)
-.||.|++..||+-|..+++.|++.+|+.|+.+..|.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3699999999999999999999999999999987653
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.58 E-value=6 Score=36.53 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=82.7
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcce-EEEeEeCCCCCEEEEEEe------CceEEEEEcCCCCc--eecCCC-----
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDF-YAMGFDGTTSTYKIVRVF------GKRSEIYTLGTSSW--REISSV----- 191 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~-~~l~~d~~~~~ykvv~~~------~~~~~vyss~~~~W--~~~~~~----- 191 (299)
+.+.|+|-+|++|. +|....+.+.... ++|.+| .-|+++++ .++=+.|.+....| +.+...
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPpgcAA~Gfvcd----GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG 131 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPPGCAAFGFVCD----GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNG 131 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCCchhhcceEec----CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCC
Confidence 47889999999997 4444433333322 444444 34677776 36667777777555 544432
Q ss_pred CCccccCCCCceEECCeeEEeecCCCccC--ccC-C--CCccEEEEEECCCC--eeeee----CCCCCCCCCccccceeE
Q 042133 192 PPEDLDNMSNGVSAYGDMHWADDDHFSFG--QRK-G--VDNCVIISFDFKKE--EFKRT----PTPDFGSLSYEHERFVM 260 (299)
Q Consensus 192 ~~~~~~~~~~~v~~~G~~yw~~~~~~~~~--~~~-~--~~~~~il~fD~~~~--~~~~i----~~P~~~~~~~~~~~~~~ 260 (299)
++.+.........++++.|...+.....+ +++ . ....+++-+-.... -|... .+|+..+. +..-++
T Consensus 132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES---HTAViY 208 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES---HTAVIY 208 (830)
T ss_pred CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc---ceeEEE
Confidence 22222233456677788888776654222 111 1 23345555554454 33322 34444331 122233
Q ss_pred EE-ECCe--EEEEEe-CCCe-EEEEEeccCCCCceeEE
Q 042133 261 IN-LKGC--LAIVIL-TPED-IEIWMMKDYDRKEWVKE 293 (299)
Q Consensus 261 l~-~~g~--L~~~~~-~~~~-~~iW~l~~~~~~~W~~~ 293 (299)
-. ..|+ +++... .+.+ =++|.|+- +.-+|.|.
T Consensus 209 ~eKDs~~skmvvyGGM~G~RLgDLW~Ldl-~Tl~W~kp 245 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGGMSGCRLGDLWTLDL-DTLTWNKP 245 (830)
T ss_pred EeccCCcceEEEEcccccccccceeEEec-ceeecccc
Confidence 23 3333 333333 3444 48999983 33388874
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=85.59 E-value=1.2 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=21.1
Q ss_pred ceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee
Q 042133 202 GVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT 243 (299)
Q Consensus 202 ~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i 243 (299)
.+.+ +|.+|...+... ......-+..||+++++|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~-----~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDS-----SGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE------TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCC-----CCcccCCEEEEECCCCEEEEC
Confidence 4445 477776665543 112233578999999999998
No 47
>smart00284 OLF Olfactomedin-like domains.
Probab=85.50 E-value=13 Score=31.51 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCC-CC----CccccceeEEE-ECCeEEEEE
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFG-SL----SYEHERFVMIN-LKGCLAIVI 271 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~-~~----~~~~~~~~~l~-~~g~L~~~~ 271 (299)
++.-|+.||.+|+-..... .|+.||+.+++.... .+|... .. +|.....+-|+ .+..|-++-
T Consensus 76 GtG~VVYngslYY~~~~s~-----------~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIY 144 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSH-----------DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIY 144 (255)
T ss_pred cccEEEECceEEEEecCCc-----------cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEE
Confidence 4568888999999765554 699999999988644 567432 11 12222356778 888888886
Q ss_pred e---CCCeEEEEEeccC
Q 042133 272 L---TPEDIEIWMMKDY 285 (299)
Q Consensus 272 ~---~~~~~~iW~l~~~ 285 (299)
. ..+.|.|-+|+..
T Consensus 145 at~~~~g~ivvSkLnp~ 161 (255)
T smart00284 145 ATEQNAGKIVISKLNPA 161 (255)
T ss_pred eccCCCCCEEEEeeCcc
Confidence 6 4678999998753
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=82.17 E-value=26 Score=28.60 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=75.8
Q ss_pred eeecceEEeeEeCCcccEEEEcccchhhhcC-CCCCCCCCCc-ceEEEeEeCCCCCEEEEEEeCceEEEEEcCCC--Cce
Q 042133 111 HSAYGLFCFHTRGGVGKAYLCNPLRKEVLEL-PQATTGGSWL-DFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTS--SWR 186 (299)
Q Consensus 111 ~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~l-P~~~~~~~~~-~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~--~W~ 186 (299)
...+|.+++. .....++.+|..||+...- .......... ......++ ++.-++......+..++.++| .|.
T Consensus 73 ~~~~~~v~v~--~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 73 VVDGGRVYVG--TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEETTEEEEE--ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred eecccccccc--cceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEE
Confidence 3344555555 2244888999888874322 1111001111 11111111 222222222567788887775 476
Q ss_pred ecCCCCCccc------cCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeE
Q 042133 187 EISSVPPEDL------DNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVM 260 (299)
Q Consensus 187 ~~~~~~~~~~------~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~ 260 (299)
.....+.... ......+..+|.+|.....+. ++++|.++.+-.. ..+.... ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------------~~~~d~~tg~~~w-~~~~~~~-------~~~ 207 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------------VVAVDLATGEKLW-SKPISGI-------YSL 207 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------------EEEEETTTTEEEE-EECSS-E-------CEC
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------------EEEEECCCCCEEE-EecCCCc-------cCC
Confidence 6443322110 011234445687777766654 7888999987332 2221111 122
Q ss_pred EE-ECCeEEEEEeCCCeEEEEEeccCCCCcee
Q 042133 261 IN-LKGCLAIVILTPEDIEIWMMKDYDRKEWV 291 (299)
Q Consensus 261 l~-~~g~L~~~~~~~~~~~iW~l~~~~~~~W~ 291 (299)
.. .+|.|++.. ..+.+..|.++. +...|.
T Consensus 208 ~~~~~~~l~~~~-~~~~l~~~d~~t-G~~~W~ 237 (238)
T PF13360_consen 208 PSVDGGTLYVTS-SDGRLYALDLKT-GKVVWQ 237 (238)
T ss_dssp EECCCTEEEEEE-TTTEEEEEETTT-TEEEEE
T ss_pred ceeeCCEEEEEe-CCCEEEEEECCC-CCEEeE
Confidence 33 566666666 777888887763 323675
No 49
>PLN02772 guanylate kinase
Probab=82.02 E-value=12 Score=33.89 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=51.8
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC----CCCCCCCCccccceeEEEECCeEEEEEe-CC
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP----TPDFGSLSYEHERFVMINLKGCLAIVIL-TP 274 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~l~~~g~L~~~~~-~~ 274 (299)
...+.++.++|.+.+..+ .......+..||..+.+|..-. .|.... +....+.-+++|.++.. ..
T Consensus 28 ~tav~igdk~yv~GG~~d-----~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~-----GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHE-----GNTLSIGVQILDKITNNWVSPIVLGTGPKPCK-----GYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred ceeEEECCEEEEEcccCC-----CccccceEEEEECCCCcEecccccCCCCCCCC-----cceEEEECCceEEEEeCCCC
Confidence 458888999999887654 1123468999999999997652 333322 22233336899999887 56
Q ss_pred CeEEEEEecc
Q 042133 275 EDIEIWMMKD 284 (299)
Q Consensus 275 ~~~~iW~l~~ 284 (299)
..=.||-|+-
T Consensus 98 ~~~~~w~l~~ 107 (398)
T PLN02772 98 PDDSIWFLEV 107 (398)
T ss_pred CccceEEEEc
Confidence 6789999873
No 50
>smart00612 Kelch Kelch domain.
Probab=81.36 E-value=3.6 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.3
Q ss_pred cccEEEEcccchhhhcCCCCC
Q 042133 125 VGKAYLCNPLRKEVLELPQAT 145 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~ 145 (299)
...+.++||.+++|..+|+++
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 346889999999999999887
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.83 E-value=34 Score=28.54 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=60.8
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC----Cce
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS----SWR 186 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~----~W~ 186 (299)
-.+|=.|+.+ .+.+.+.+|||..+....--... .....-+++.+|.+ |+-.-+ +..+.+++..|| .||
T Consensus 26 N~dGnY~ltc-GsdrtvrLWNp~rg~liktYsgh--G~EVlD~~~s~Dns----kf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 26 NVDGNYCLTC-GSDRTVRLWNPLRGALIKTYSGH--GHEVLDAALSSDNS----KFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred ccCCCEEEEc-CCCceEEeecccccceeeeecCC--Cceeeecccccccc----ccccCCCCceEEEEEcccCeeeeecc
Confidence 3556667665 56889999999988765322222 00001144555543 222111 577888888885 576
Q ss_pred ecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCC
Q 042133 187 EISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDF 248 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~ 248 (299)
.....-.-.......+|.+.|.+= ..+-++|..+..+..|..=..
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD-----------------~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFD-----------------SSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred cccceeeEEEecCcceEEEecccc-----------------ceeEEEEcccCCCCccchhhh
Confidence 655432222223334555555421 246666776666666644433
No 52
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=79.78 E-value=28 Score=28.38 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=54.1
Q ss_pred ecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC--Ccee-c
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS--SWRE-I 188 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~--~W~~-~ 188 (299)
.+|.++.. .....++.+|+.||+...--..+... ... . .. ..-++++.. +..+..++..+| .|+. .
T Consensus 35 ~~~~v~~~--~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~-~-~~-----~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVA--SGDGNLYALDAKTGKVLWRFDLPGPI-SGA-P-VV-----DGGRVYVGTSDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEE--ETTSEEEEEETTTSEEEEEEECSSCG-GSG-E-EE-----ETTEEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEE--cCCCEEEEEECCCCCEEEEeeccccc-cce-e-ee-----cccccccccceeeeEecccCCcceeeeecc
Confidence 56777776 55888999999998754221111000 000 0 00 011222222 345667776664 5883 3
Q ss_pred CCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee
Q 042133 189 SSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF 240 (299)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~ 240 (299)
...+.............++.+|.....+ .|.++|+++.+-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------~l~~~d~~tG~~ 144 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTSSG------------KLVALDPKTGKL 144 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEETCS------------EEEEEETTTTEE
T ss_pred ccccccccccccCceEecCEEEEEeccC------------cEEEEecCCCcE
Confidence 3322211111222333356677666555 499999998754
No 53
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=77.58 E-value=1.5 Score=38.14 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHhcCC--------hhhhhhhhccchhhHhhcCC
Q 042133 4 RERPSIPDEIVDEIIIKLP--------AKSLMRFRCVSKIWLHKIDS 42 (299)
Q Consensus 4 ~~~~~LP~Dll~~Il~rLp--------~~~l~r~r~VcK~W~~li~~ 42 (299)
..|+.||.++|.+|+.|.. -+.++.++.|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4688999999999999987 23688999999999997643
No 54
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.35 E-value=7.6 Score=34.18 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=72.3
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECC-eeEEeecCCCc-cCcc---------------------------C
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYG-DMHWADDDHFS-FGQR---------------------------K 223 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G-~~yw~~~~~~~-~~~~---------------------------~ 223 (299)
..+.+|++.+++|..++...+... ....++..++ .+|+..+-..+ ++.. +
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGL-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeeEEecCCCChhheecccccccc-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 568899999999999887633222 2334555555 77777655542 1100 0
Q ss_pred CCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEe----CCCeEEEEEeccCCCC-ceeEEEE
Q 042133 224 GVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVIL----TPEDIEIWMMKDYDRK-EWVKEYK 295 (299)
Q Consensus 224 ~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~----~~~~~~iW~l~~~~~~-~W~~~~~ 295 (299)
-....-+++||+.+++|+.. ..|..... ...++ -+++|.++.. .-.+-.+|+.+-.+++ +|.+...
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~a------Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~ 264 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNA------GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD 264 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCcc------CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC
Confidence 11234689999999999998 47755432 13344 6777888866 3445666666543344 8988744
No 55
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=76.22 E-value=1e+02 Score=32.07 Aligned_cols=155 Identities=12% Similarity=0.002 Sum_probs=83.4
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCC-----CCC---C--cceEEEeEeCCCCCEEEEEEe--CceEEEEEcC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATT-----GGS---W--LDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLG 181 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~-----~~~---~--~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~ 181 (299)
+|.+++.. ..+.++.++|+.++....+-.... ... . ....++.+++..+ + ++... ...+.+|+..
T Consensus 694 ~g~LyVad-~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~-LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 694 NEKVYIAM-AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-E-LYIADSESSSIRALDLK 770 (1057)
T ss_pred CCeEEEEE-CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC-E-EEEEECCCCeEEEEECC
Confidence 56666553 346778889988776543321110 000 0 1115677776543 2 22222 4788888887
Q ss_pred CCCceecCCC-C---Cc-------------cccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee
Q 042133 182 TSSWREISSV-P---PE-------------DLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 182 ~~~W~~~~~~-~---~~-------------~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~ 242 (299)
++.-+.+... + .. .......++.+ +|.+|....... .|..||+++.....
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~-----------rIrviD~~tg~v~t 839 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH-----------KIKKLDPATKRVTT 839 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC-----------EEEEEECCCCeEEE
Confidence 7653322110 0 00 01112234444 578877766554 79999999887765
Q ss_pred eCCCCC--------CCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 243 TPTPDF--------GSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 243 i~~P~~--------~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
+.--.. ....+ .....|. .+|+|+++....+.+++|-++.
T Consensus 840 iaG~G~~G~~dG~~~~a~l--~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQL--SEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeccCCcCCCCCccccccc--CCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 521100 00001 1123344 7899887777899999998864
No 56
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.56 E-value=5.1 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=18.3
Q ss_pred CceEECCeeEEeecCCCccCccCCCCccEEEEEECCC
Q 042133 201 NGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKK 237 (299)
Q Consensus 201 ~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~ 237 (299)
..++.+|.+|..+.++. +.+||.+|
T Consensus 16 ~~~v~~g~vyv~~~dg~------------l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGN------------LYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSE------------EEEEETT-
T ss_pred CCEEECCEEEEEcCCCE------------EEEEeCCC
Confidence 46788999999988775 99999875
No 57
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=72.20 E-value=62 Score=27.70 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=83.0
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v 203 (299)
+..+.+||-++.....+-.-. . ......+.|.|+..+..++-.. +..+.|.++++.+=+..- +.+....+.-.+
T Consensus 126 DkTiklwnt~g~ck~t~~~~~--~-~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~--~gh~~~v~t~~v 200 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDS--H-REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF--IGHSGYVNTVTV 200 (315)
T ss_pred cceeeeeeecccEEEEEecCC--C-cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc--ccccccEEEEEE
Confidence 456888888887766554432 1 2333677788887777777666 788888888875443211 111111112245
Q ss_pred EECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEEe
Q 042133 204 SAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMM 282 (299)
Q Consensus 204 ~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l 282 (299)
..||.+.--.+.+. .++-.|++..+- ..-++.... -..|. ...++.++...+..+.||.+
T Consensus 201 SpDGslcasGgkdg-----------~~~LwdL~~~k~-lysl~a~~~-------v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 201 SPDGSLCASGGKDG-----------EAMLWDLNEGKN-LYSLEAFDI-------VNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred CCCCCEEecCCCCc-----------eEEEEEccCCce-eEeccCCCe-------EeeEEecCCceeEeeccCCceEEEec
Confidence 56777655544443 688889887655 223332221 13455 78888888887778999998
Q ss_pred cc
Q 042133 283 KD 284 (299)
Q Consensus 283 ~~ 284 (299)
+.
T Consensus 262 ~~ 263 (315)
T KOG0279|consen 262 ES 263 (315)
T ss_pred cc
Confidence 74
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.15 E-value=41 Score=30.38 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=32.8
Q ss_pred EEEEEECCCCeee-eeCCCCCCCCCccccceeEEEECCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.|..|+.++..-+ .+..-... ....|.-+|++.++-.....+.+|-++|
T Consensus 377 ~i~l~~~e~~~dr~lise~~~i-------ts~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEEQPI-------TSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred ceeeechhhhhhhccccccCce-------eEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 4777777765443 23222111 2244558999999999999999999985
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=70.46 E-value=82 Score=28.35 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=51.6
Q ss_pred ecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC--ceecC
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS--WREIS 189 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~--W~~~~ 189 (299)
.+|.|++. .....++..|+.||+...--..+ ........+ . +. +|+... +..+.-++..+|. |+.-.
T Consensus 119 ~~~~v~v~--~~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v-~----~~-~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 119 AGGKVYIG--SEKGQVYALNAEDGEVAWQTKVA--GEALSRPVV-S----DG-LVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred ECCEEEEE--cCCCEEEEEECCCCCCcccccCC--CceecCCEE-E----CC-EEEEECCCCEEEEEEccCCCEeeeecC
Confidence 45666666 44667888999998743321111 000000000 0 11 222222 3456777777754 87654
Q ss_pred CCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC
Q 042133 190 SVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE 238 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~ 238 (299)
..+.........++..+|.+|+...++ .+.++|..+.
T Consensus 189 ~~~~~~~~~~~sP~v~~~~v~~~~~~g------------~v~a~d~~~G 225 (394)
T PRK11138 189 DVPSLTLRGESAPATAFGGAIVGGDNG------------RVSAVLMEQG 225 (394)
T ss_pred CCCcccccCCCCCEEECCEEEEEcCCC------------EEEEEEccCC
Confidence 322111111234566677777755544 3666666654
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=69.99 E-value=12 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=15.9
Q ss_pred cEEEEEECCCCeeeee-CCCC
Q 042133 228 CVIISFDFKKEEFKRT-PTPD 247 (299)
Q Consensus 228 ~~il~fD~~~~~~~~i-~~P~ 247 (299)
.-+.+||+.+.+|+.+ ++|+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 4588999999999998 3443
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=66.59 E-value=1.1e+02 Score=28.22 Aligned_cols=140 Identities=10% Similarity=0.012 Sum_probs=78.4
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcce-EEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDF-YAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNM 199 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~-~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~ 199 (299)
....-+++||-.|++...+-++......... +.+..| + . .+++. ...+.+.+..|+.|-..-..+....
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd--~-~--fia~~G~~G~I~lLhakT~eli~s~KieG~v~--- 348 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD--S-N--FIAIAGNNGHIHLLHAKTKELITSFKIEGVVS--- 348 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCC--C-C--eEEEcccCceEEeehhhhhhhhheeeeccEEe---
Confidence 5567799999999999888776533211111 332222 1 1 33333 4677888888888843211111100
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEEECCeEEEEEeCCCeEEE
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEI 279 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~~~g~L~~~~~~~~~~~i 279 (299)
.-....+|+.-|++.... -|.++|+........-.-.... ++....+..+|.+..++.+.+.+.|
T Consensus 349 ~~~fsSdsk~l~~~~~~G-----------eV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTG-----------EVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred eEEEecCCcEEEEEcCCc-----------eEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEE
Confidence 001224666666654443 5999999988554333222221 1223333388886666668889999
Q ss_pred EEeccC
Q 042133 280 WMMKDY 285 (299)
Q Consensus 280 W~l~~~ 285 (299)
+-.+..
T Consensus 414 Yd~~s~ 419 (514)
T KOG2055|consen 414 YDGNSC 419 (514)
T ss_pred eccchh
Confidence 886643
No 62
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.31 E-value=18 Score=19.17 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=18.9
Q ss_pred eEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee
Q 042133 203 VSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF 240 (299)
Q Consensus 203 v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~ 240 (299)
+..+|.+|....++ .+.++|.++.+.
T Consensus 3 ~~~~~~v~~~~~~g------------~l~a~d~~~G~~ 28 (33)
T smart00564 3 VLSDGTVYVGSTDG------------TLYALDAKTGEI 28 (33)
T ss_pred EEECCEEEEEcCCC------------EEEEEEcccCcE
Confidence 44577888776665 599999987643
No 63
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.81 E-value=99 Score=27.53 Aligned_cols=117 Identities=11% Similarity=0.124 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGS 250 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~ 250 (299)
..+-+|++.++.|+.....|...... .++...|. +-.+.+.-. +.=........-|.....+|..+ .+|....
T Consensus 196 ~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiK---pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~ 270 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIK---PGLRTAEVKQADFGGDNLKWLKLSDLPAPIG 270 (381)
T ss_pred ccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceec---CCccccceeEEEeccCceeeeeccCCCCCCC
Confidence 56778999999999888654433321 23333333 333322221 11123334566666677899877 5555443
Q ss_pred CCccccceeEE-E-ECCeEEEEEeC----------------------CCeEEEEEeccCCCCceeEEEEEec
Q 042133 251 LSYEHERFVMI-N-LKGCLAIVILT----------------------PEDIEIWMMKDYDRKEWVKEYKITH 298 (299)
Q Consensus 251 ~~~~~~~~~~l-~-~~g~L~~~~~~----------------------~~~~~iW~l~~~~~~~W~~~~~i~~ 298 (299)
.. .+.-...+ + .+|.+.+.... .-+=+||.++ .++|..+..++.
T Consensus 271 ~~-~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d---~g~Wk~~GeLp~ 338 (381)
T COG3055 271 SN-KEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD---NGSWKIVGELPQ 338 (381)
T ss_pred CC-ccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc---CCceeeecccCC
Confidence 20 11111122 2 66666666551 2234788888 357998887764
No 64
>PF13013 F-box-like_2: F-box-like domain
Probab=64.98 E-value=5.8 Score=28.74 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHhcCChhhhhhhhccch
Q 042133 6 RPSIPDEIVDEIIIKLPAKSLMRFRCVSK 34 (299)
Q Consensus 6 ~~~LP~Dll~~Il~rLp~~~l~r~r~VcK 34 (299)
..+||+||+..|+..-....+..+-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999988777765555555
No 65
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=64.40 E-value=21 Score=25.71 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=30.5
Q ss_pred cccEEEEcccch-hhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe
Q 042133 125 VGKAYLCNPLRK-EVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF 171 (299)
Q Consensus 125 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 171 (299)
...++++||.|+ .|. |..+ ....+.+.+|+..+.|+||-+.
T Consensus 10 rA~V~~yd~~tKk~Wv--Ps~~----~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWI--PASK----HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeE--eCCC----CceeEEEEecCCCcEEEEEEec
Confidence 457899999997 776 3332 1223788889999999999876
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=63.74 E-value=50 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCC
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPD 247 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~ 247 (299)
+|.+||...... .|..+|+++.+...+.+|.
T Consensus 11 ~g~l~~~D~~~~-----------~i~~~~~~~~~~~~~~~~~ 41 (246)
T PF08450_consen 11 DGRLYWVDIPGG-----------RIYRVDPDTGEVEVIDLPG 41 (246)
T ss_dssp TTEEEEEETTTT-----------EEEEEETTTTEEEEEESSS
T ss_pred CCEEEEEEcCCC-----------EEEEEECCCCeEEEEecCC
Confidence 599999988776 7999999999998888776
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=61.46 E-value=1.2e+02 Score=27.18 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=21.0
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCe
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE 239 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~ 239 (299)
..++..+|.+|.....+. +.++|+.+.+
T Consensus 250 ~sP~v~~~~vy~~~~~g~------------l~ald~~tG~ 277 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGN------------LVALDLRSGQ 277 (394)
T ss_pred CCcEEECCEEEEEEcCCe------------EEEEECCCCC
Confidence 456778999998776654 8888888753
No 68
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.09 E-value=80 Score=28.16 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=42.4
Q ss_pred ceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCe--eeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEE
Q 042133 202 GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE--FKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIE 278 (299)
Q Consensus 202 ~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~ 278 (299)
.++.||++|.....+. |.+||.++.+ |+.-... ... ....-++ .+|++++-.... .
T Consensus 64 ~~~~dg~v~~~~~~G~------------i~A~d~~~g~~~W~~~~~~-~~~-----~~~~~~~~~~G~i~~g~~~g---~ 122 (370)
T COG1520 64 PADGDGTVYVGTRDGN------------IFALNPDTGLVKWSYPLLG-AVA-----QLSGPILGSDGKIYVGSWDG---K 122 (370)
T ss_pred cEeeCCeEEEecCCCc------------EEEEeCCCCcEEecccCcC-cce-----eccCceEEeCCeEEEecccc---e
Confidence 5899999999876665 9999999876 5443332 000 1112233 567755544433 6
Q ss_pred EEEecc-CCCCceeEE
Q 042133 279 IWMMKD-YDRKEWVKE 293 (299)
Q Consensus 279 iW~l~~-~~~~~W~~~ 293 (299)
++.|++ .++..|...
T Consensus 123 ~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 123 LYALDASTGTLVWSRN 138 (370)
T ss_pred EEEEECCCCcEEEEEe
Confidence 677766 343366653
No 69
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.81 E-value=27 Score=29.90 Aligned_cols=52 Identities=19% Similarity=0.024 Sum_probs=36.9
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe---------CCCeEEEEEec
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL---------TPEDIEIWMMK 283 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~---------~~~~~~iW~l~ 283 (299)
.|..+|.++.++...++|-.+.. .+..--+. -.|.|.+... ..+.++||--.
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~---~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHAD---ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP 186 (353)
T ss_pred eeEEecCcccceEEeecccccCC---CcccceeeCCCccEEEeeccccceecCcccCceeeeccC
Confidence 79999999999999999966542 12233344 7788877765 25667777654
No 70
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=59.95 E-value=1.3e+02 Score=26.78 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee-----------ee
Q 042133 174 RSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-----------KR 242 (299)
Q Consensus 174 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-----------~~ 242 (299)
....|+-++..|+....- ......++.++...--|+..... .....|-+.|+.+..- ..
T Consensus 200 GTysfDt~~~~W~~~GdW---~LPF~G~a~y~~el~~W~Gls~~-------~~~~~lca~dv~~~~~~~~pp~~~~~~~~ 269 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW---MLPFHGQAEYVPELDLWFGLSSD-------GGGGHLCACDVSSADSASPPPEWKLTWEE 269 (342)
T ss_pred EEEEEEcCCcceeeccce---ecCcCCccEECCCcCeEEEeccC-------CCCcEEEEEeccccccCCCCCcceecccc
Confidence 567777778999988653 11222345555555456555543 1115789999987432 22
Q ss_pred eCCCCCCCCCccccceeEEE--ECCeEEEEEe
Q 042133 243 TPTPDFGSLSYEHERFVMIN--LKGCLAIVIL 272 (299)
Q Consensus 243 i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~ 272 (299)
+..|.... .....|+ =+|+.|++-.
T Consensus 270 l~~~~~~~-----~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 270 LFPPEEWR-----HVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccccccc-----ccCceEEECCCCCEEEEEE
Confidence 22332211 1235566 4689999985
No 71
>PF15408 PH_7: Pleckstrin homology domain
Probab=56.91 E-value=5.9 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=21.3
Q ss_pred hhhhhhhhccchhhHhhcCCHHHHH
Q 042133 23 AKSLMRFRCVSKIWLHKIDSLAFAI 47 (299)
Q Consensus 23 ~~~l~r~r~VcK~W~~li~~~~F~~ 47 (299)
++.++..+-|||+|-....+|+|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 4667788899999999999999864
No 72
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=56.35 E-value=1.4e+02 Score=26.28 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=65.2
Q ss_pred EEEeEeCCCCCEEEEEEe-CceEEEEEcC--CCCceecCCC---CCccccC-CCCceEE--CCe-eEEeecCCCccCccC
Q 042133 154 YAMGFDGTTSTYKIVRVF-GKRSEIYTLG--TSSWREISSV---PPEDLDN-MSNGVSA--YGD-MHWADDDHFSFGQRK 223 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~-~~~~~vyss~--~~~W~~~~~~---~~~~~~~-~~~~v~~--~G~-~yw~~~~~~~~~~~~ 223 (299)
-.+.+++.. +|-.|.-. ...+.+|+.. ++.++.+... |...... ....+.+ ||. +|.-.....
T Consensus 195 Rh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~------ 267 (345)
T PF10282_consen 195 RHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN------ 267 (345)
T ss_dssp EEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT------
T ss_pred cEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC------
Confidence 455566643 33222222 6778888777 5666554432 2211111 1223334 476 555554443
Q ss_pred CCCccEEEEEECC--CCeeeee-CCCCCCCCCccccceeEEE--ECCeEEEEEe-CCCeEEEEEeccCCCCceeEEE
Q 042133 224 GVDNCVIISFDFK--KEEFKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVIL-TPEDIEIWMMKDYDRKEWVKEY 294 (299)
Q Consensus 224 ~~~~~~il~fD~~--~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~-~~~~~~iW~l~~~~~~~W~~~~ 294 (299)
.|.+|+++ +.+...+ ..|.... ....+. .+|+..+++. ..+.+.++.++. .++.+....
T Consensus 268 -----sI~vf~~d~~~g~l~~~~~~~~~G~------~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~-~tG~l~~~~ 332 (345)
T PF10282_consen 268 -----SISVFDLDPATGTLTLVQTVPTGGK------FPRHFAFSPDGRYLYVANQDSNTVSVFDIDP-DTGKLTPVG 332 (345)
T ss_dssp -----EEEEEEECTTTTTEEEEEEEEESSS------SEEEEEE-TTSSEEEEEETTTTEEEEEEEET-TTTEEEEEE
T ss_pred -----EEEEEEEecCCCceEEEEEEeCCCC------CccEEEEeCCCCEEEEEecCCCeEEEEEEeC-CCCcEEEec
Confidence 78888884 4566666 3333221 123333 5777777766 888999999973 234566554
No 73
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.23 E-value=1.5e+02 Score=26.39 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=14.2
Q ss_pred cceEEeeEeCCcccEEEEcccchhh
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEV 138 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~ 138 (299)
+|.+++. ..+..++..|+.||+.
T Consensus 105 ~~~v~v~--~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 105 GGLVFVG--TEKGEVIALDAEDGKE 127 (377)
T ss_pred CCEEEEE--cCCCEEEEEECCCCcE
Confidence 5555555 3355677777777763
No 74
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=53.79 E-value=42 Score=19.39 Aligned_cols=38 Identities=3% Similarity=-0.007 Sum_probs=27.3
Q ss_pred eEEE-ECCeEEEEEe--C--CCeEEEEEeccCCCCceeEEEEEe
Q 042133 259 VMIN-LKGCLAIVIL--T--PEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 259 ~~l~-~~g~L~~~~~--~--~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
.... .+++|++++. . ...-.+|+++- ..++|+++-.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDP-ETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEET-TTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeC-CCCEEEEcCCCC
Confidence 4555 9999999988 3 44557777763 345899987764
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.59 E-value=92 Score=25.73 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=34.6
Q ss_pred CceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEE
Q 042133 201 NGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVI 271 (299)
Q Consensus 201 ~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~ 271 (299)
.++.+ +|.+|....... .|.+||.+.+....|++|.. . -.+..++ ..+.|++.+
T Consensus 187 DG~~vD~~G~l~va~~~~~-----------~I~~~~p~G~~~~~i~~p~~-~-----~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWGGG-----------RIVVFDPDGKLLREIELPVP-R-----PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEBTTS-EEEEEETTT-----------EEEEEETTSCEEEEEE-SSS-S-----EEEEEEESTTSSEEEEEE
T ss_pred CcceEcCCCCEEEEEcCCC-----------EEEEECCCccEEEEEcCCCC-C-----EEEEEEECCCCCEEEEEe
Confidence 35666 488876655444 79999999888888999933 2 2345555 446677654
No 76
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.77 E-value=50 Score=22.93 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=34.0
Q ss_pred CeeEEeecCCCccCcc-------CCCCccEEEEEECCCCeeeee--CCCCCCCCCccccceeEEEECCeEEEEEe--CCC
Q 042133 207 GDMHWADDDHFSFGQR-------KGVDNCVIISFDFKKEEFKRT--PTPDFGSLSYEHERFVMINLKGCLAIVIL--TPE 275 (299)
Q Consensus 207 G~~yw~~~~~~~~~~~-------~~~~~~~il~fD~~~~~~~~i--~~P~~~~~~~~~~~~~~l~~~g~L~~~~~--~~~ 275 (299)
|.+||...+.. ++.. .......++.||+.+++...+ .+... ..+.|..+|.-.+++. ...
T Consensus 10 g~vYfTdsS~~-~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fp--------NGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 10 GTVYFTDSSSR-YDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFP--------NGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp --EEEEES-SS---TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSE--------EEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEeCccc-cCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCcc--------CeEEEcCCCCEEEEEeccCce
Confidence 78888877654 2211 234456899999999998776 33211 1144445555444444 455
Q ss_pred eEEEEE
Q 042133 276 DIEIWM 281 (299)
Q Consensus 276 ~~~iW~ 281 (299)
..+.|.
T Consensus 81 i~rywl 86 (89)
T PF03088_consen 81 ILRYWL 86 (89)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 556653
No 77
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=51.86 E-value=45 Score=30.33 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=64.1
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcce-----EEEeEeCCCCCEEEEEEeCceEEEEEcCCCC---ceecCCCCCcccc
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDF-----YAMGFDGTTSTYKIVRVFGKRSEIYTLGTSS---WREISSVPPEDLD 197 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~-----~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~---W~~~~~~~~~~~~ 197 (299)
-+++|.|..|++...+-.....+....- +-=||--.++.+|.+-.. ... =|.+.++ .
T Consensus 253 ~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~----------~~~l~F~r~vrSP-N---- 317 (448)
T PF12458_consen 253 WRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTD----------MDGLEFERKVRSP-N---- 317 (448)
T ss_pred eeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeeccc----------CCCceEEEEecCC-C----
Confidence 3799999999988877665532221111 112333445666655321 110 0111111 0
Q ss_pred CCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEEECCeEEEEEeC----
Q 042133 198 NMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILT---- 273 (299)
Q Consensus 198 ~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~~~g~L~~~~~~---- 273 (299)
+ ...+|..-... .....++.||+-+.+. ..|..+.. ..|..+|+|++...+
T Consensus 318 ----G---EDvLYvF~~~~--------~g~~~Ll~YN~I~k~v---~tPi~chG-------~alf~DG~l~~fra~~~Ep 372 (448)
T PF12458_consen 318 ----G---EDVLYVFYARE--------EGRYLLLPYNLIRKEV---ATPIICHG-------YALFEDGRLVYFRAEGDEP 372 (448)
T ss_pred ----C---ceEEEEEEECC--------CCcEEEEechhhhhhh---cCCeeccc-------eeEecCCEEEEEecCCCCc
Confidence 0 12455443332 2345788999876553 45655542 455589999999872
Q ss_pred --CCeEEEEEec
Q 042133 274 --PEDIEIWMMK 283 (299)
Q Consensus 274 --~~~~~iW~l~ 283 (299)
..-++||.-.
T Consensus 373 trvHp~QiWqTP 384 (448)
T PF12458_consen 373 TRVHPMQIWQTP 384 (448)
T ss_pred ceeccceeecCC
Confidence 4467899853
No 78
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=46.59 E-value=29 Score=29.44 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhhcCCHHHHH
Q 042133 5 ERPSIPDEIVDEIIIKLP-AKSLMRFRCVSKIWLHKIDSLAFAI 47 (299)
Q Consensus 5 ~~~~LP~Dll~~Il~rLp-~~~l~r~r~VcK~W~~li~~~~F~~ 47 (299)
...+||.+++.+|+.||| =++|..++.|-..-..++.+...-+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 356899999999999999 7888888877665555555544433
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=46.58 E-value=1.1e+02 Score=25.87 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=32.3
Q ss_pred cEEEEEECCCCe-eeee-CCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 228 CVIISFDFKKEE-FKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 228 ~~il~fD~~~~~-~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.++..||..|++ .... .-.+. --..+- -+|.+|....+.+++.||++.-
T Consensus 246 ~~~~kfDy~TgeEi~~~nkgh~g--------pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 246 FKVYKFDYNTGEEIGSYNKGHFG--------PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred eEEEEEeccCCceeeecccCCCC--------ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 468888888753 3221 11111 112333 8999999999999999999964
No 80
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=46.36 E-value=42 Score=24.42 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=29.8
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCc-ceEEEeEeCCCCCEEEEEEe
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWL-DFYAMGFDGTTSTYKIVRVF 171 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~l~~d~~~~~ykvv~~~ 171 (299)
...+.++||.|+.|. |..+ .... ..+.+.+++..+.|+|+-..
T Consensus 8 rA~Vm~~d~~tk~W~--P~~~--~~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 8 RASVMVYDDSNKKWV--PAGG--GSQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEEeeEEcCCCCcEE--cCCC--CCCCcceEEEEEcCCCCEEEEEEee
Confidence 457889999999865 4433 1122 23777788888899999754
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=45.39 E-value=1.4e+02 Score=27.65 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=68.5
Q ss_pred cccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCce-ecCCCCCccccCCCCceEECCeeE
Q 042133 132 NPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWR-EISSVPPEDLDNMSNGVSAYGDMH 210 (299)
Q Consensus 132 NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~-~~~~~~~~~~~~~~~~v~~~G~~y 210 (299)
||-++.|...-.++..........+.|.|.. .|.++.....++++|++.+.+=+ .++...... .......||.+.
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~-P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v---~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKH-PYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVV---YSVDFRSDGRLL 83 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCC-CCceEEecccEEEEEecchhhhhhhHHhhccce---eEEEeecCCeEE
Confidence 4555666544332211112222566666642 34444444789999999885432 232211110 012334469988
Q ss_pred EeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEEecc
Q 042133 211 WADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 211 w~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
..+.... .+-+||..+... +.+.-..... ...... .++.+.+.+.+.....+|.+..
T Consensus 84 aaGD~sG-----------~V~vfD~k~r~iLR~~~ah~apv------~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 84 AAGDESG-----------HVKVFDMKSRVILRQLYAHQAPV------HVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred EccCCcC-----------cEEEeccccHHHHHHHhhccCce------eEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 7766654 799999766433 2222222111 112233 4555555555777888888764
No 82
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.18 E-value=2.2e+02 Score=24.82 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=40.2
Q ss_pred ceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEEECCeEEEEEe
Q 042133 202 GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMINLKGCLAIVIL 272 (299)
Q Consensus 202 ~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~~~g~L~~~~~ 272 (299)
...-||.+-+.+..+. ......|-+||.. +.|..+ +.|-..-. .....|+-||++.++..
T Consensus 120 vfs~dG~~LYATEndf------d~~rGViGvYd~r-~~fqrvgE~~t~GiG----pHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDF------DPNRGVIGVYDAR-EGFQRVGEFSTHGIG----PHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCC------CCCCceEEEEecc-cccceecccccCCcC----cceeEEecCCcEEEEeC
Confidence 4445777666666654 4566689999997 778777 77765432 22345558888888876
No 83
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=41.20 E-value=2.2e+02 Score=24.04 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=67.4
Q ss_pred ecceEEeeEeCCcccEEEEcccchhhh---cCCCCCCCCCCcc----e--EEEeEeCCC---------CCEEEEEEe--C
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEVL---ELPQATTGGSWLD----F--YAMGFDGTT---------STYKIVRVF--G 172 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~~---~lP~~~~~~~~~~----~--~~l~~d~~~---------~~ykvv~~~--~ 172 (299)
-||-+...+ .+...++-+|-.|+... .||.......... . +-|+.|+.. ++-+++... +
T Consensus 77 YngslYY~~-~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~ 155 (250)
T PF02191_consen 77 YNGSLYYNK-YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDP 155 (250)
T ss_pred ECCcEEEEe-cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCc
Confidence 456666664 34678888898887655 6777664311111 1 555555421 111222222 2
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFG 249 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~ 249 (299)
..++| ...|.+.-.. ..-..+-.+-|+||.+..... .....-.+||+.+++-..+.+|..-
T Consensus 156 ~tL~v----~~tw~T~~~k-----~~~~naFmvCGvLY~~~s~~~-------~~~~I~yafDt~t~~~~~~~i~f~~ 216 (250)
T PF02191_consen 156 ETLSV----EQTWNTSYPK-----RSAGNAFMVCGVLYATDSYDT-------RDTEIFYAFDTYTGKEEDVSIPFPN 216 (250)
T ss_pred ccCce----EEEEEeccCc-----hhhcceeeEeeEEEEEEECCC-------CCcEEEEEEECCCCceeceeeeecc
Confidence 22222 2456542111 111346778899999987764 2356789999999887777666443
No 84
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=40.39 E-value=44 Score=18.63 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=10.3
Q ss_pred EEEEEECCCCeee
Q 042133 229 VIISFDFKKEEFK 241 (299)
Q Consensus 229 ~il~fD~~~~~~~ 241 (299)
.|.++|.++.+..
T Consensus 11 ~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 11 YLYALDAKTGKVL 23 (38)
T ss_dssp EEEEEETTTTSEE
T ss_pred EEEEEECCCCCEE
Confidence 6999999987543
No 85
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=38.53 E-value=2e+02 Score=24.17 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCC----CeeeeeCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKK----EEFKRTPTPDF 248 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~----~~~~~i~~P~~ 248 (299)
....+|++.+++++.+...... ++....+.-||.+.-..+... ....+-.|+..+ .+| .+.+..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~--FCSgg~~L~dG~ll~tGG~~~--------G~~~ir~~~p~~~~~~~~w--~e~~~~ 113 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDT--FCSGGAFLPDGRLLQTGGDND--------GNKAIRIFTPCTSDGTCDW--TESPND 113 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCC--cccCcCCCCCCCEEEeCCCCc--------cccceEEEecCCCCCCCCc--eECccc
Confidence 3456788888888877654221 222234555777664444332 233577788765 344 444433
Q ss_pred CCCCccccceeEEE--ECCeEEEEEe-CCCeEEEEE
Q 042133 249 GSLSYEHERFVMIN--LKGCLAIVIL-TPEDIEIWM 281 (299)
Q Consensus 249 ~~~~~~~~~~~~l~--~~g~L~~~~~-~~~~~~iW~ 281 (299)
+.. .+...... -+|++.++.. .....++|=
T Consensus 114 m~~---~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 114 MQS---GRWYPTATTLPDGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred ccC---CCccccceECCCCCEEEEeCcCCCcccccC
Confidence 332 12223333 7899999888 555566554
No 86
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=37.63 E-value=2.9e+02 Score=24.45 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.6
Q ss_pred EEEEECCCC
Q 042133 230 IISFDFKKE 238 (299)
Q Consensus 230 il~fD~~~~ 238 (299)
+.+||.++.
T Consensus 117 l~ald~~tG 125 (377)
T TIGR03300 117 VIALDAEDG 125 (377)
T ss_pred EEEEECCCC
Confidence 555555443
No 87
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=36.03 E-value=2.9e+02 Score=24.01 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=66.8
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
++..+.+|+-.|++....-.. .....+++...|.+ .+.+.-+ +....+.+.+.+. .....+.+....+.-
T Consensus 164 GD~TCalWDie~g~~~~~f~G----H~gDV~slsl~p~~--~ntFvSg~cD~~aklWD~R~~~--c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHG----HTGDVMSLSLSPSD--GNTFVSGGCDKSAKLWDVRSGQ--CVQTFEGHESDINSV 235 (343)
T ss_pred CCceEEEEEcccceEEEEecC----CcccEEEEecCCCC--CCeEEecccccceeeeeccCcc--eeEeecccccccceE
Confidence 466788888877765532221 11222455555532 2222222 4566666665542 111111111111111
Q ss_pred ceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC-eeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEE
Q 042133 202 GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE-EFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIE 278 (299)
Q Consensus 202 ~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~ 278 (299)
..+=+|.-+-...++. ..-.||+..+ +...+.-+.... .-.++. ..|+|.+++....+..
T Consensus 236 ~ffP~G~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~~~~------gitSv~FS~SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDA-----------TCRLYDLRADQELAVYSHDSIIC------GITSVAFSKSGRLLFAGYDDFTCN 298 (343)
T ss_pred EEccCCCeeeecCCCc-----------eeEEEeecCCcEEeeeccCcccC------CceeEEEcccccEEEeeecCCcee
Confidence 1112454444444433 6778999875 344444222221 122333 8899999999888889
Q ss_pred EEEe
Q 042133 279 IWMM 282 (299)
Q Consensus 279 iW~l 282 (299)
||--
T Consensus 299 vWDt 302 (343)
T KOG0286|consen 299 VWDT 302 (343)
T ss_pred Eeec
Confidence 9964
No 88
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=34.43 E-value=2.7e+02 Score=26.21 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=36.7
Q ss_pred EEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.+-..|+.+.+-++- +++..... +--|. .|-+||+++...+.+.||-|.+
T Consensus 488 tlsiWDLAapTprikaeltssapa------CyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPA------CYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchh------hhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 577788888877665 66654432 12233 8999999999999999999864
No 89
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=33.80 E-value=2.5e+02 Score=24.55 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=28.5
Q ss_pred CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCC
Q 042133 207 GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGS 250 (299)
Q Consensus 207 G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~ 250 (299)
+.+||....+. .|..+|+.+.+-+.++.|....
T Consensus 37 ~~L~w~DI~~~-----------~i~r~~~~~g~~~~~~~p~~~~ 69 (307)
T COG3386 37 GALLWVDILGG-----------RIHRLDPETGKKRVFPSPGGFS 69 (307)
T ss_pred CEEEEEeCCCC-----------eEEEecCCcCceEEEECCCCcc
Confidence 56899999887 8999999999999998887654
No 90
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=32.66 E-value=3.4e+02 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=17.2
Q ss_pred EEEEEECCCCeeeeeCCCC
Q 042133 229 VIISFDFKKEEFKRTPTPD 247 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~ 247 (299)
.|.+|+++.+....+.+|.
T Consensus 236 ~v~~~~pdG~l~~~i~lP~ 254 (307)
T COG3386 236 RVVRFNPDGKLLGEIKLPV 254 (307)
T ss_pred eEEEECCCCcEEEEEECCC
Confidence 6999999988999999994
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.33 E-value=3.5e+02 Score=23.80 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=64.7
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCC-CceecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTS-SWREISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~-~W~~~~~~~~~~~~~~~~~v 203 (299)
+..+..||-.+|+-.-+-+... ....+-+++..+.|.|+. ...+.+|.+++- .-+.+... -.. ....
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~-----~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~-~r~----l~~~ 215 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN-----KATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENP-KRI----LCAT 215 (362)
T ss_pred CceeeeehhhcCccceeeccCC-----cceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhcc-ccc----eeee
Confidence 3456666666665443322221 112345565555555543 678888888773 33333321 000 0122
Q ss_pred EECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeE-EE-ECCeEEEEEeCCCeEEEEE
Q 042133 204 SAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVM-IN-LKGCLAIVILTPEDIEIWM 281 (299)
Q Consensus 204 ~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~-l~-~~g~L~~~~~~~~~~~iW~ 281 (299)
+.++.--.+..++. .|..+|.++...-...+-.... -..+. +. .++.+.+.....+.+.||.
T Consensus 216 ~l~~~~L~vG~d~~-----------~i~~~D~ds~~~~~~~~AH~~R-----VK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 216 FLDGSELLVGGDNE-----------WISLKDTDSDTPLTEFLAHENR-----VKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ecCCceEEEecCCc-----------eEEEeccCCCccceeeecchhh-----eeeeEEEecCCceEEEEeccCceEEEEE
Confidence 23333333333333 6999999874332222211111 11222 23 4455554455899999999
Q ss_pred ecc
Q 042133 282 MKD 284 (299)
Q Consensus 282 l~~ 284 (299)
++.
T Consensus 280 ~~~ 282 (362)
T KOG0294|consen 280 IDM 282 (362)
T ss_pred ccc
Confidence 874
No 92
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=31.84 E-value=2.9e+02 Score=23.31 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=48.3
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC-eeeeeCCCCCCCC-----CccccceeEEE-ECCeEEEEE
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE-EFKRTPTPDFGSL-----SYEHERFVMIN-LKGCLAIVI 271 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~-----~~~~~~~~~l~-~~g~L~~~~ 271 (299)
...-|+.+|.+|+-..... .|+.||++++ ......+|...-. .|-.....-++ .+..|-++-
T Consensus 70 gTg~VVynGs~yynk~~t~-----------~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviY 138 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGTR-----------NIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIY 138 (249)
T ss_pred ccceEEEcceEEeeccCCc-----------ceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEe
Confidence 3467889999999876665 7999999996 3344455543321 11112235566 677777776
Q ss_pred e---CCCeEEEEEecc
Q 042133 272 L---TPEDIEIWMMKD 284 (299)
Q Consensus 272 ~---~~~~~~iW~l~~ 284 (299)
. +.+.+.|-.|+.
T Consensus 139 at~~~~g~iv~skLdp 154 (249)
T KOG3545|consen 139 ATPENAGTIVLSKLDP 154 (249)
T ss_pred cccccCCcEEeeccCH
Confidence 6 566777777765
No 93
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.65 E-value=2.4e+02 Score=24.61 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=36.7
Q ss_pred EEEEEECCCCeeee-eCCCCCCCCCccccceeEEE-ECCeEEEEEe-----CCCeEEEEEec
Q 042133 229 VIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN-LKGCLAIVIL-----TPEDIEIWMMK 283 (299)
Q Consensus 229 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-----~~~~~~iW~l~ 283 (299)
.+++||..+.+-.. +..|+... .+..-+. .+|++.+.+. ..+.|.||...
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRH-----FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRH-----FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCE-----EecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 79999999987654 44454433 2335566 8899999887 47899999987
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=31.44 E-value=2.4e+02 Score=24.75 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEEec
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l~ 283 (299)
.|.+|..+..+. .|-.+|--+.++ ..+.-..+.. .-...++ .+||-.+.......+.+|++.
T Consensus 272 t~~lYvTaSkDG-----------~IklwDGVS~rCv~t~~~AH~gs-----evcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 272 TGSLYVTASKDG-----------AIKLWDGVSNRCVRTIGNAHGGS-----EVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred CccEEEEeccCC-----------cEEeeccccHHHHHHHHhhcCCc-----eeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 588998887765 688888776655 2332221111 1123344 788887777789999999986
No 95
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=31.23 E-value=4.4e+02 Score=26.45 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC--eeee
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE--EFKR 242 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~--~~~~ 242 (299)
..+++.++|.+|..+..+. +.++|.+|. .|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~~------------V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHNK------------VIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCCe------------EEEEECCCCcEEEEE
Confidence 3568999999999877664 999999975 4543
No 96
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=30.11 E-value=2.4e+02 Score=24.84 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=37.5
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEEECCeEEEEEe
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMINLKGCLAIVIL 272 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~~~g~L~~~~~ 272 (299)
..+-..+|.+|.+..... .+..+|.+++++..+ .+|.... .|...|.+.++..
T Consensus 206 hSPRWhdgrLwvldsgtG-----------ev~~vD~~~G~~e~Va~vpG~~r---------GL~f~G~llvVgm 259 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGRG-----------ELGYVDPQAGKFQPVAFLPGFTR---------GLAFAGDFAFVGL 259 (335)
T ss_pred cCCcEeCCeEEEEECCCC-----------EEEEEcCCCCcEEEEEECCCCCc---------ccceeCCEEEEEe
Confidence 346667899988877665 799999998988887 7775543 3442266666655
No 97
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.35 E-value=5.2e+02 Score=24.85 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=77.3
Q ss_pred EEeeecceEEeeEeCCcccEEEEcccchhhhcCCCC-------CCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEE
Q 042133 109 ISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQA-------TTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYT 179 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~-------~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vys 179 (299)
-+..+|||+++. +..+.+-.|+|-+++....-.. +.........++.|+...- . +.++ .-.+.+|+
T Consensus 182 ~in~~hgLla~G--t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~-~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 182 SINEEHGLLACG--TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--H-VAVGTSTGSVLIYD 256 (703)
T ss_pred eecCccceEEec--ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce--e-EEeeccCCcEEEEE
Confidence 345899999998 6678899999999886532211 1110011114555543211 1 1222 35677888
Q ss_pred cCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCC---------CeeeeeCCCCCCC
Q 042133 180 LGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKK---------EEFKRTPTPDFGS 250 (299)
Q Consensus 180 s~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~---------~~~~~i~~P~~~~ 250 (299)
+++..=-.+... ...+-+ -.+.|+..+. +..|++.|-.. ..+..++.-.+.+
T Consensus 257 LRa~~pl~~kdh--------~~e~pi-~~l~~~~~~~----------q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lN 317 (703)
T KOG2321|consen 257 LRASKPLLVKDH--------GYELPI-KKLDWQDTDQ----------QNKVVSMDKRILKIWDECTGKPMASIEPTSDLN 317 (703)
T ss_pred cccCCceeeccc--------CCccce-eeecccccCC----------CceEEecchHHhhhcccccCCceeeccccCCcC
Confidence 877432111111 001111 1344443322 23566655432 2333343333332
Q ss_pred CCccccceeEEEECCeEEEEEeCCCeEEEEEeccCCCC-ce
Q 042133 251 LSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRK-EW 290 (299)
Q Consensus 251 ~~~~~~~~~~l~~~g~L~~~~~~~~~~~iW~l~~~~~~-~W 290 (299)
+ ++.+.++.|++.+.+...|..+...+-|.. .|
T Consensus 318 D-------~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 318 D-------FCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred c-------eeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 2 444477888888777777777776665544 66
No 98
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=29.21 E-value=3.8e+02 Score=25.63 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=38.7
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGT 182 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~ 182 (299)
+.+|-+++.. ..+.++.||||...+. +-.+..+..... +..-|-|-+++-.|+--. +..+++|+..+
T Consensus 59 n~dG~lL~SG-SDD~r~ivWd~~~~Kl--lhsI~TgHtaNI-FsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 59 NADGELLASG-SDDTRLIVWDPFEYKL--LHSISTGHTANI-FSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cCCCCEEeec-CCcceEEeecchhcce--eeeeecccccce-eEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4677777773 2367899999994443 333331111111 344455655554444333 78999999875
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.70 E-value=5.8e+02 Score=24.88 Aligned_cols=158 Identities=7% Similarity=0.009 Sum_probs=75.1
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISS 190 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~ 190 (299)
+|+|-.++.+ .++..+.|||+..+-...+-... ....+.-.+.|- ..+...|+-.+ +..+.+++..++.=+....
T Consensus 82 ~~~~~tlIS~-SsDtTVK~W~~~~~~~~c~stir--~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 82 CGNGKTLISA-SSDTTVKVWNAHKDNTFCMSTIR--THKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred hcCCCceEEe-cCCceEEEeecccCcchhHhhhh--cccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence 4555333332 34778999999877522222222 111122333331 22333444333 6778888777653322222
Q ss_pred C---CCcccc-CCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECC
Q 042133 191 V---PPEDLD-NMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKG 265 (299)
Q Consensus 191 ~---~~~~~~-~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g 265 (299)
. +..... .... .+|-++......-.-+...+-.|-.+|+.+..-. +.+--+.. +-...+. .+|
T Consensus 158 ~n~~t~~sl~sG~k~------siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-mkLrGHTd-----NVr~ll~~dDG 225 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKD------SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-MKLRGHTD-----NVRVLLVNDDG 225 (735)
T ss_pred ccccccccCCCCCcc------ceeeeecCCcceEEEecCcccceEEeccccccce-eeeecccc-----ceEEEEEcCCC
Confidence 1 111111 1111 2333333222000000111225777888775321 22322221 3445566 888
Q ss_pred eEEEEEeCCCeEEEEEeccC
Q 042133 266 CLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l~~~ 285 (299)
.=++.+...+.+++|-|...
T Consensus 226 t~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CeEeecCCCceEEeeecccc
Confidence 88888889999999999653
No 100
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=26.86 E-value=1.2e+02 Score=16.64 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.6
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCC
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKK 237 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~ 237 (299)
++.+||...... .|-+.+++.
T Consensus 20 ~~~lYw~D~~~~-----------~I~~~~~~g 40 (43)
T smart00135 20 EGRLYWTDWGLD-----------VIEVANLDG 40 (43)
T ss_pred CCEEEEEeCCCC-----------EEEEEeCCC
Confidence 578999877765 677777754
No 101
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=26.32 E-value=2.7e+02 Score=24.99 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=34.0
Q ss_pred ccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 227 NCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 227 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
...|+.-|+++++-. |+++... ++...|- -+|...++..-...+.+|....
T Consensus 217 sssi~iWdpdtg~~~--pL~~~gl-----gg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKI--PLIPKGL-----GGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred cceEEEEcCCCCCcc--cccccCC-----CceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 368999999999874 4443222 2222333 7788877777788999996543
No 102
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=26.20 E-value=1.5e+02 Score=24.75 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=36.4
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcC--CCCCCCCCCcceEEEeEeCCCCCEEEE
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLEL--PQATTGGSWLDFYAMGFDGTTSTYKIV 168 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~l--P~~~~~~~~~~~~~l~~d~~~~~ykvv 168 (299)
..+|.|+-. ....++|..||.|+....+ .+..... ....+++-|.|.-+.-+||
T Consensus 36 pa~G~LYgl--~~~g~lYtIn~~tG~aT~vg~s~~~~al-~g~~~gvDFNP~aDRlRvv 91 (236)
T PF14339_consen 36 PANGQLYGL--GSTGRLYTINPATGAATPVGASPLTVAL-SGTAFGVDFNPAADRLRVV 91 (236)
T ss_pred cCCCCEEEE--eCCCcEEEEECCCCeEEEeecccccccc-cCceEEEecCcccCcEEEE
Confidence 567888777 5588999999999997766 3222111 1124777788877766665
No 103
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.05 E-value=1.6e+02 Score=25.39 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCceecCCCCCc----cccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPE----DLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPT 245 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~----~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~ 245 (299)
..+.+|+..+.+|......-.. ........+++.|.+-.-. .....+..||+++.+|..+.-
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~-----------~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNG-----------TNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECC-----------CCceeEEEEecCCCeeeecCC
Confidence 5678899999999887654111 1112234555555444322 134589999999999988755
No 104
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.94 E-value=4.5e+02 Score=23.00 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCce-ecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCC
Q 042133 172 GKRSEIYTLGTSSWR-EISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFG 249 (299)
Q Consensus 172 ~~~~~vyss~~~~W~-~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~ 249 (299)
.....||+..++.=. .+.. +....++......-||..-+.+..+. ...+..|-++|.. +.+..+ +.|...
T Consensus 27 G~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~------~~g~G~IgVyd~~-~~~~ri~E~~s~G 98 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDY------ETGRGVIGVYDAA-RGYRRIGEFPSHG 98 (305)
T ss_pred CcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEecccc------CCCcEEEEEEECc-CCcEEEeEecCCC
Confidence 467778888876532 2222 33333333334445788777776664 4566789999998 556555 555443
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=24.30 E-value=5.3e+02 Score=23.98 Aligned_cols=90 Identities=11% Similarity=0.205 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCceecCCCCCccccCCCCceEECCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCC
Q 042133 172 GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGS 250 (299)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~ 250 (299)
+..+.+|..+-..=..+.........-.+...+-+|. .-+....+. ++.+||+.+.+...+..|-...
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----------y~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----------YLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce-----------EEEEeeccccccccccCCCCcc
Confidence 5667777665422222222211111111223333666 555555555 8999999999999998776654
Q ss_pred CC----c---cccceeEEE-ECCeEEEEEe
Q 042133 251 LS----Y---EHERFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 251 ~~----~---~~~~~~~l~-~~g~L~~~~~ 272 (299)
.. | .++....|. .+|.+.++..
T Consensus 303 ~~~~e~FeVShd~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 303 EKSMERFEVSHDSNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred cchhheeEecCCCCeEEEcccCceEEeehh
Confidence 21 1 112233333 6666666655
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.11 E-value=4.5e+02 Score=22.35 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=39.8
Q ss_pred ccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccCCCCceeEEEEE
Q 042133 227 NCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 227 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~~~~~W~~~~~i 296 (299)
...|..-|-+.|+|..-.+-+... ....+. .-|.+.-+..+.+.+.+|+=.- +++|+++...
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f~~------~~w~vSWS~sGn~LaVs~GdNkvtlwke~~--~Gkw~~v~~~ 297 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEFPD------VVWRVSWSLSGNILAVSGGDNKVTLWKENV--DGKWEEVGEV 297 (299)
T ss_pred cEEEEEecCccCcccccccccCCc------ceEEEEEeccccEEEEecCCcEEEEEEeCC--CCcEEEcccc
Confidence 345556665567886654443221 123444 7788887888999999998543 3489987654
No 107
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.93 E-value=87 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHhcCChhhhhhhhccc
Q 042133 5 ERPSIPDEIVDEIIIKLPAKSLMRFRCVS 33 (299)
Q Consensus 5 ~~~~LP~Dll~~Il~rLp~~~l~r~r~Vc 33 (299)
.+.++|-+++.-||.+..+..|.++-.-|
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 45689999999999999999999888776
No 108
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=23.39 E-value=4.5e+02 Score=22.11 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=46.4
Q ss_pred cEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-----CceEEEEEcCC----CCceecCCCCCcccc
Q 042133 127 KAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-----GKRSEIYTLGT----SSWREISSVPPEDLD 197 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-----~~~~~vyss~~----~~W~~~~~~~~~~~~ 197 (299)
.-.++||.|++++.++... ..++.+-.+-+ +-+++..+ ...+.+|++.+ ..|.+........++
T Consensus 47 ~s~~yD~~tn~~rpl~v~t----d~FCSgg~~L~---dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQT----DTFCSGGAFLP---DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCcEEeccCCC----CCcccCcCCCC---CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 4579999999999776543 22221111111 11333333 25566777654 678776543333344
Q ss_pred CCCCceEECCeeEEeecCCC
Q 042133 198 NMSNGVSAYGDMHWADDDHF 217 (299)
Q Consensus 198 ~~~~~v~~~G~~yw~~~~~~ 217 (299)
.......-||.+..+.+...
T Consensus 120 YpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred cccceECCCCCEEEEeCcCC
Confidence 44445555777777766653
No 109
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=22.98 E-value=6.3e+02 Score=24.01 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccce--------eEEE-ECCeEEE
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERF--------VMIN-LKGCLAI 269 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~--------~~l~-~~g~L~~ 269 (299)
...+++.+|.+|.....+. |.++|..+.+-..---+..... ... ..+. .+|++++
T Consensus 62 ~stPvv~~g~vyv~s~~g~------------v~AlDa~TGk~lW~~~~~~~~~----~~~~~~~~~~~rg~av~~~~v~v 125 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYSR------------VYALDAKTGKELWKYDPKLPDD----VIPVMCCDVVNRGVALYDGKVFF 125 (527)
T ss_pred ccCCEEECCEEEEECCCCc------------EEEEECCCCceeeEecCCCCcc----cccccccccccccceEECCEEEE
Q ss_pred EEeCCCeEEEEEeccCCCC-ceeE
Q 042133 270 VILTPEDIEIWMMKDYDRK-EWVK 292 (299)
Q Consensus 270 ~~~~~~~~~iW~l~~~~~~-~W~~ 292 (299)
...+. .|..|+....+ .|..
T Consensus 126 ~t~dg---~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 126 GTLDA---RLVALDAKTGKVVWSK 146 (527)
T ss_pred EcCCC---EEEEEECCCCCEEeec
No 110
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=22.57 E-value=3.1e+02 Score=27.42 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=36.8
Q ss_pred EEEEEECCCCe-eeeeCCCCCCCCCccccceeEEE-ECCeEEEEEe-CCCeEEEEEeccCCC
Q 042133 229 VIISFDFKKEE-FKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVIL-TPEDIEIWMMKDYDR 287 (299)
Q Consensus 229 ~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~~~~~~iW~l~~~~~ 287 (299)
.|++||++=|+ ...+++|.... .+..++ ...+=.+.+. .++.+.||+-+++.+
T Consensus 253 ellv~dle~~~~l~vvpier~~a------kfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~ 308 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGA------KFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPT 308 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCc------ceeEeccCCCcceEEEEecCCeEEEEEeeccCc
Confidence 39999999774 46678887653 346666 4444444555 788999999987643
No 111
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.41 E-value=4.1e+02 Score=21.80 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEeeecceEEeeEeCCcccEEEEcccchhhhcCCCC--CCCC-------CCcce-EEEeEeCCCCCEEEEEEeCceEEE
Q 042133 108 FISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQA--TTGG-------SWLDF-YAMGFDGTTSTYKIVRVFGKRSEI 177 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~--~~~~-------~~~~~-~~l~~d~~~~~ykvv~~~~~~~~v 177 (299)
..+.+++..++.. +..+.++|||-.+++...-|.+ +.-. ..... ..+..+ .+..=||.+......+
T Consensus 16 ~~l~~~~~~Ll~i--T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 16 SFLECNGSYLLAI--TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT--SNGVPIVTLSNGDSYS 91 (219)
T ss_pred EEEEeCCCEEEEE--eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc--CCCCEEEEEeCCCEEE
Confidence 4556666666555 4588999999888776533311 1000 01111 222222 2233455555667899
Q ss_pred EEcCCCCceecCCC
Q 042133 178 YTLGTSSWREISSV 191 (299)
Q Consensus 178 yss~~~~W~~~~~~ 191 (299)
|+..-++|..+.+.
T Consensus 92 y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 92 YSPDLGCWIRVSDS 105 (219)
T ss_pred eccccceeEEeccc
Confidence 99999999988764
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.03 E-value=4.1e+02 Score=23.36 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=35.0
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEE
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWM 281 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~ 281 (299)
.+-.||++|-+.-.---|..... ..-..+- ..|+|++-..+.+.++||-
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht----~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHT----GAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ceeEEeccceeEeeecCcccccc----cceeEEEecCCccEEEEeccCCcEEeec
Confidence 57889999987766555766542 2222333 7799999888889999995
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=21.03 E-value=8.9e+02 Score=24.67 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCceecCCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCC
Q 042133 172 GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFG 249 (299)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~ 249 (299)
+..+.+|....+.=..+-.. +.. ....+.+ +|..--.+.++. .|-..++.+..-...--+...
T Consensus 75 ~~tv~~y~fps~~~~~iL~R---ftl-p~r~~~v~g~g~~iaagsdD~-----------~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILAR---FTL-PIRDLAVSGSGKMIAAGSDDT-----------AVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred cceEEEeeCCCCCccceeee---eec-cceEEEEecCCcEEEeecCce-----------eEEEEeccccchheeecccCC
Confidence 67888888877655433221 111 1123444 444433333332 566777776654444333332
Q ss_pred CCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccCC
Q 042133 250 SLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDYD 286 (299)
Q Consensus 250 ~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~~ 286 (299)
. ...|. .+|.+..+....+.+.||.+++..
T Consensus 140 p-------Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 140 P-------VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred c-------eeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 2 13344 667777777788889999988643
No 114
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=20.54 E-value=2.6e+02 Score=26.42 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=38.7
Q ss_pred cEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccC-------CCCceeEEEE
Q 042133 228 CVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDY-------DRKEWVKEYK 295 (299)
Q Consensus 228 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~-------~~~~W~~~~~ 295 (299)
..+-+||..+++..-+ ..+|. ++-..+. .|||..+...+..-+.||.+.|- +-++|+-.-.
T Consensus 312 GfLRvF~fdt~eLlg~------mkSYF-GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va 381 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGV------MKSYF-GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA 381 (636)
T ss_pred ceEEEeeccHHHHHHH------HHhhc-cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence 3577777777655222 11222 1223444 88999888889999999999874 2237876543
No 115
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=20.35 E-value=8.9e+02 Score=24.38 Aligned_cols=124 Identities=12% Similarity=0.030 Sum_probs=60.0
Q ss_pred ecceEEeeEeCCcccEEEEcccchh--hhcCCCCCCCCC--CcceEEEeE-eC-------------CCCCEEEEEEe-Cc
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKE--VLELPQATTGGS--WLDFYAMGF-DG-------------TTSTYKIVRVF-GK 173 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~--~~~lP~~~~~~~--~~~~~~l~~-d~-------------~~~~ykvv~~~-~~ 173 (299)
.+|.|++. .....++-.|+.||+ |+.-|....... ...+-++.| +. ....-+|+... +.
T Consensus 193 vgg~lYv~--t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 193 VGDTLYLC--TPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred ECCEEEEE--CCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 36777777 556788889999987 444444331110 111122222 21 01122343332 44
Q ss_pred eEEEEEcCCC--CceecC-----------CCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee
Q 042133 174 RSEIYTLGTS--SWREIS-----------SVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF 240 (299)
Q Consensus 174 ~~~vyss~~~--~W~~~~-----------~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~ 240 (299)
.+.-++.+|| +|+.-. ..+.........++..+|.++.-....+.. ........|.+||.+|.+.
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~--~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNY--STDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccc--cccCCCcEEEEEECCCCcE
Confidence 4455555553 354211 111111223456888999988743211100 0011235799999998743
Done!