Query 042133
Match_columns 299
No_of_seqs 128 out of 1360
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e31_A FBS1, F-box only protei 99.2 6.7E-12 2.3E-16 106.0 6.0 53 1-53 46-99 (297)
2 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 7.4E-12 2.5E-16 78.3 3.5 45 3-47 6-50 (53)
3 1zgk_A Kelch-like ECH-associat 98.8 6.6E-07 2.3E-11 76.7 21.1 163 110-297 117-297 (308)
4 2vpj_A Kelch-like protein 12; 98.8 8.1E-07 2.8E-11 75.7 20.9 164 109-297 107-288 (301)
5 1zgk_A Kelch-like ECH-associat 98.8 3.8E-07 1.3E-11 78.2 18.6 148 126-296 90-249 (308)
6 3ii7_A Kelch-like protein 7; p 98.8 9.6E-07 3.3E-11 75.4 20.5 166 109-297 96-282 (306)
7 4asc_A Kelch repeat and BTB do 98.8 5.5E-07 1.9E-11 77.4 18.5 159 110-293 94-283 (315)
8 4asc_A Kelch repeat and BTB do 98.8 4.8E-07 1.6E-11 77.7 17.8 148 127-296 68-230 (315)
9 3ii7_A Kelch-like protein 7; p 98.8 7.1E-07 2.4E-11 76.3 18.3 166 110-296 51-234 (306)
10 2vpj_A Kelch-like protein 12; 98.7 1E-06 3.5E-11 75.0 18.7 162 110-296 58-240 (301)
11 2ovr_B FBW7, F-BOX/WD repeat p 98.7 1.6E-06 5.3E-11 77.9 20.1 47 5-51 18-64 (445)
12 2woz_A Kelch repeat and BTB do 98.7 3.8E-07 1.3E-11 78.5 14.6 147 128-296 80-240 (318)
13 2xn4_A Kelch-like protein 2; s 98.7 8.4E-07 2.9E-11 75.6 16.6 163 111-296 58-238 (302)
14 2woz_A Kelch repeat and BTB do 98.7 1.3E-06 4.6E-11 75.0 17.0 161 110-293 105-293 (318)
15 2xn4_A Kelch-like protein 2; s 98.7 1.3E-06 4.5E-11 74.4 16.8 161 111-294 105-283 (302)
16 3v7d_B Cell division control p 98.7 9.3E-06 3.2E-10 73.0 23.3 44 6-49 15-59 (464)
17 1p22_A F-BOX/WD-repeat protein 98.4 3.4E-06 1.2E-10 75.6 14.4 46 6-51 11-60 (435)
18 2uvk_A YJHT; unknown function, 98.4 8.2E-06 2.8E-10 71.2 15.0 157 126-297 168-352 (357)
19 2uvk_A YJHT; unknown function, 98.4 5.1E-05 1.7E-09 66.1 20.1 154 126-297 86-304 (357)
20 3l2o_B F-box only protein 4; s 98.2 4.9E-07 1.7E-11 75.7 2.9 53 3-55 2-54 (312)
21 2ast_B S-phase kinase-associat 97.9 6.4E-06 2.2E-10 71.2 3.7 42 3-44 6-47 (336)
22 2p1m_B Transport inhibitor res 97.7 1.2E-05 4.2E-10 74.9 3.1 39 1-39 1-40 (594)
23 2zwa_A Leucine carboxyl methyl 97.7 0.00062 2.1E-08 64.9 14.6 161 113-295 396-591 (695)
24 2zwa_A Leucine carboxyl methyl 97.6 0.0013 4.5E-08 62.7 15.1 162 114-292 451-640 (695)
25 1k3i_A Galactose oxidase precu 97.3 0.0065 2.2E-07 57.4 15.7 69 112-188 251-329 (656)
26 1k3i_A Galactose oxidase precu 97.2 0.0033 1.1E-07 59.4 12.3 156 106-272 351-529 (656)
27 3ogk_B Coronatine-insensitive 96.9 0.00039 1.3E-08 64.7 2.8 33 7-39 14-47 (592)
28 3ei3_B DNA damage-binding prot 92.1 4.3 0.00015 34.4 14.2 137 124-284 94-236 (383)
29 4h5i_A Guanine nucleotide-exch 90.8 4.5 0.00016 34.5 13.0 64 229-298 292-360 (365)
30 3jrp_A Fusion protein of prote 90.3 4.6 0.00016 33.8 12.5 122 154-295 59-201 (379)
31 4gga_A P55CDC, cell division c 90.2 8.3 0.00028 33.4 14.4 146 112-284 114-261 (420)
32 4e54_B DNA damage-binding prot 89.3 5.9 0.0002 34.5 12.7 138 123-284 139-282 (435)
33 3fvz_A Peptidyl-glycine alpha- 88.1 11 0.00036 31.5 14.1 154 114-284 154-322 (329)
34 4aez_A CDC20, WD repeat-contai 86.6 14 0.00049 31.5 14.2 136 124-284 111-248 (401)
35 3jrp_A Fusion protein of prote 86.2 13 0.00046 30.8 13.8 60 229-296 232-297 (379)
36 3dwl_C Actin-related protein 2 85.8 3.6 0.00012 34.8 8.9 136 124-283 31-176 (377)
37 1k8k_C P40, ARP2/3 complex 41 85.3 9.4 0.00032 31.8 11.2 137 123-283 27-172 (372)
38 3jro_A Fusion protein of prote 83.6 8.3 0.00028 36.6 11.1 112 154-284 57-189 (753)
39 1gxr_A ESG1, transducin-like e 82.6 18 0.00062 29.4 13.0 148 112-284 60-214 (337)
40 4ggc_A P55CDC, cell division c 82.3 18 0.00062 29.2 13.7 147 112-284 34-181 (318)
41 4gqb_B Methylosome protein 50; 81.1 14 0.00048 31.1 10.6 147 112-284 91-246 (344)
42 2fp8_A Strictosidine synthase; 77.7 16 0.00055 30.2 9.8 141 126-284 165-313 (322)
43 3m0c_C LDL receptor, low-densi 77.5 52 0.0018 31.6 15.5 99 154-275 517-623 (791)
44 3fm0_A Protein CIAO1; WDR39,SG 77.3 29 0.001 28.9 11.5 139 124-284 36-181 (345)
45 2hes_X YDR267CP; beta-propelle 76.5 22 0.00076 29.4 10.4 140 125-284 174-328 (330)
46 3v64_C Agrin; beta propeller, 76.0 35 0.0012 28.8 15.1 144 112-281 82-231 (349)
47 3hfq_A Uncharacterized protein 75.8 31 0.0011 28.4 11.2 152 111-284 47-218 (347)
48 4g56_B MGC81050 protein; prote 75.5 30 0.001 29.1 11.0 147 112-284 103-258 (357)
49 2xyi_A Probable histone-bindin 74.6 30 0.001 29.9 11.0 145 116-284 196-353 (430)
50 3hrp_A Uncharacterized protein 73.9 44 0.0015 28.9 15.2 153 112-282 228-408 (409)
51 4g56_B MGC81050 protein; prote 73.9 39 0.0013 28.4 15.6 136 125-285 203-344 (357)
52 1q7f_A NHL, brain tumor CG1071 73.3 33 0.0011 27.3 15.9 147 112-282 38-192 (286)
53 1ri6_A Putative isomerase YBHE 72.8 37 0.0013 27.6 14.1 126 154-297 181-320 (343)
54 3g4e_A Regucalcin; six bladed 71.0 40 0.0014 27.3 11.5 114 114-237 24-139 (297)
55 1rwi_B Serine/threonine-protei 70.7 36 0.0012 26.7 14.5 143 112-284 116-264 (270)
56 3bg1_A Protein SEC13 homolog; 70.3 35 0.0012 27.9 10.1 72 113-188 23-96 (316)
57 1rwi_B Serine/threonine-protei 70.0 38 0.0013 26.6 17.0 140 112-282 75-220 (270)
58 3v65_B Low-density lipoprotein 69.8 53 0.0018 28.2 15.1 103 114-241 87-194 (386)
59 2z2n_A Virginiamycin B lyase; 69.2 41 0.0014 26.7 15.9 140 112-281 107-252 (299)
60 3m0c_C LDL receptor, low-densi 69.2 83 0.0028 30.2 14.3 102 154-276 474-581 (791)
61 3k26_A Polycomb protein EED; W 67.8 49 0.0017 27.1 14.0 138 125-284 43-192 (366)
62 1q7f_A NHL, brain tumor CG1071 65.6 49 0.0017 26.3 16.7 146 112-284 129-280 (286)
63 1l0q_A Surface layer protein; 65.6 52 0.0018 27.5 10.4 129 123-283 9-146 (391)
64 4a11_B DNA excision repair pro 64.8 60 0.0021 27.0 13.0 112 154-284 103-218 (408)
65 2pm7_B Protein transport prote 64.1 56 0.0019 26.3 14.0 20 265-284 170-189 (297)
66 3v64_C Agrin; beta propeller, 62.3 70 0.0024 26.9 15.6 104 114-242 44-152 (349)
67 2aq5_A Coronin-1A; WD40 repeat 62.3 71 0.0024 26.9 13.0 150 114-285 93-255 (402)
68 4ggc_A P55CDC, cell division c 61.6 60 0.0021 25.9 14.9 49 229-284 265-315 (318)
69 3p5b_L Low density lipoprotein 61.4 79 0.0027 27.2 15.9 100 154-276 205-312 (400)
70 1r5m_A SIR4-interacting protei 61.2 72 0.0024 26.7 11.0 131 125-283 268-424 (425)
71 1n7d_A LDL receptor, low-densi 61.2 64 0.0022 30.3 10.8 32 201-243 543-577 (699)
72 3fvz_A Peptidyl-glycine alpha- 60.0 71 0.0024 26.2 15.5 138 127-283 70-226 (329)
73 3dsm_A Uncharacterized protein 58.3 77 0.0026 26.1 16.8 144 114-283 2-160 (328)
74 1p22_A F-BOX/WD-repeat protein 58.2 88 0.003 26.7 14.4 88 172-284 275-365 (435)
75 3dsm_A Uncharacterized protein 57.7 79 0.0027 26.0 14.3 128 108-247 88-223 (328)
76 4gqb_B Methylosome protein 50; 57.6 83 0.0028 26.2 14.8 135 125-284 191-331 (344)
77 3vgz_A Uncharacterized protein 56.4 80 0.0027 25.7 12.3 102 125-246 205-313 (353)
78 2pm9_A Protein WEB1, protein t 54.6 78 0.0027 26.5 9.6 146 123-284 133-294 (416)
79 2qe8_A Uncharacterized protein 52.2 66 0.0023 26.7 8.6 74 202-283 71-153 (343)
80 1k8k_C P40, ARP2/3 complex 41 52.0 37 0.0012 28.1 6.9 94 172-284 29-127 (372)
81 1gxr_A ESG1, transducin-like e 51.9 91 0.0031 25.0 14.9 133 124-284 117-255 (337)
82 3jro_A Fusion protein of prote 51.6 1.2E+02 0.004 28.6 11.1 59 123-183 74-133 (753)
83 2dg1_A DRP35, lactonase; beta 51.3 97 0.0033 25.1 11.4 148 112-283 53-212 (333)
84 2kwv_A RAD30 homolog B, DNA po 51.0 8.4 0.00029 22.0 1.7 20 4-23 19-38 (48)
85 1got_B GT-beta; complex (GTP-b 50.9 1E+02 0.0035 25.3 14.2 136 123-284 74-215 (340)
86 3dwl_C Actin-related protein 2 50.6 84 0.0029 26.0 9.1 23 263-285 215-237 (377)
87 1l0q_A Surface layer protein; 50.6 1.1E+02 0.0037 25.4 11.7 141 111-284 39-189 (391)
88 2qc5_A Streptogramin B lactona 50.3 91 0.0031 24.5 15.4 116 108-247 24-143 (300)
89 3u4y_A Uncharacterized protein 50.1 89 0.0031 25.2 9.0 56 229-284 244-304 (331)
90 3u4y_A Uncharacterized protein 49.3 1E+02 0.0035 24.8 13.7 141 114-285 9-161 (331)
91 3lrv_A PRE-mRNA-splicing facto 49.3 1.1E+02 0.0037 25.1 13.7 151 108-285 88-245 (343)
92 2ovr_B FBW7, F-BOX/WD repeat p 48.7 1.3E+02 0.0043 25.7 16.8 92 172-284 298-391 (445)
93 3q7m_A Lipoprotein YFGL, BAMB; 48.6 1.2E+02 0.004 25.3 16.6 106 110-240 99-210 (376)
94 1kv9_A Type II quinohemoprotei 48.3 1.4E+02 0.0047 27.8 10.7 118 113-242 65-194 (668)
95 3g4e_A Regucalcin; six bladed 48.3 52 0.0018 26.6 7.2 31 206-247 24-54 (297)
96 2pm9_A Protein WEB1, protein t 48.2 1.2E+02 0.0041 25.3 14.5 142 123-285 185-338 (416)
97 4e54_B DNA damage-binding prot 48.1 1.3E+02 0.0045 25.7 11.0 110 154-283 123-239 (435)
98 2aq5_A Coronin-1A; WD40 repeat 47.8 1.2E+02 0.0042 25.3 18.1 154 112-284 43-207 (402)
99 3fm0_A Protein CIAO1; WDR39,SG 47.6 1.2E+02 0.004 25.0 11.5 148 112-283 70-224 (345)
100 3v65_B Low-density lipoprotein 46.7 1.4E+02 0.0046 25.5 16.0 99 154-277 205-311 (386)
101 2p4o_A Hypothetical protein; p 46.5 47 0.0016 27.1 6.6 58 206-283 42-101 (306)
102 3e5z_A Putative gluconolactona 46.4 46 0.0016 26.7 6.5 57 206-282 38-97 (296)
103 2pbi_B Guanine nucleotide-bind 46.1 1.3E+02 0.0043 25.0 12.6 45 229-280 307-353 (354)
104 3bg1_A Protein SEC13 homolog; 45.4 1.2E+02 0.0041 24.5 13.7 70 115-187 71-142 (316)
105 1r5m_A SIR4-interacting protei 45.3 1.3E+02 0.0045 24.9 14.6 141 112-284 215-361 (425)
106 3scy_A Hypothetical bacterial 45.0 1.3E+02 0.0044 24.7 9.8 49 229-283 234-290 (361)
107 3nok_A Glutaminyl cyclase; bet 44.8 1.3E+02 0.0043 24.6 14.8 106 114-247 64-175 (268)
108 1npe_A Nidogen, entactin; glyc 44.6 1.1E+02 0.0039 24.0 16.1 111 112-242 45-160 (267)
109 3vl1_A 26S proteasome regulato 44.0 1.4E+02 0.0048 24.9 13.3 49 229-284 314-365 (420)
110 2dg1_A DRP35, lactonase; beta 42.7 67 0.0023 26.1 7.1 28 206-244 55-82 (333)
111 2qc5_A Streptogramin B lactona 41.7 1.3E+02 0.0043 23.7 16.5 139 112-280 112-256 (300)
112 4a0p_A LRP6, LRP-6, low-densit 41.2 2.2E+02 0.0074 26.3 13.9 111 112-243 46-161 (628)
113 1n7d_A LDL receptor, low-densi 40.8 1.3E+02 0.0044 28.3 9.3 72 154-240 543-617 (699)
114 1ijq_A LDL receptor, low-densi 40.4 1.5E+02 0.0052 24.2 14.6 95 125-242 9-113 (316)
115 1vyh_C Platelet-activating fac 40.3 1.7E+02 0.0058 24.8 13.7 133 123-284 127-265 (410)
116 3e5z_A Putative gluconolactona 39.6 1.4E+02 0.0048 23.7 15.6 143 123-283 47-201 (296)
117 3v9f_A Two-component system se 38.9 2.5E+02 0.0086 26.3 15.1 105 126-247 427-534 (781)
118 3v7d_B Cell division control p 38.8 1.8E+02 0.0063 24.7 17.9 132 123-284 287-421 (464)
119 2ojh_A Uncharacterized protein 38.7 1.3E+02 0.0046 23.2 13.6 134 125-284 21-160 (297)
120 3p5b_L Low density lipoprotein 38.7 1.9E+02 0.0064 24.8 14.5 139 113-277 122-270 (400)
121 3f3f_A Nucleoporin SEH1; struc 38.3 1.5E+02 0.0051 23.5 15.7 33 263-297 316-348 (351)
122 1kb0_A Quinohemoprotein alcoho 37.6 2.1E+02 0.0073 26.5 10.3 119 113-243 76-207 (677)
123 2pbi_B Guanine nucleotide-bind 37.3 1.7E+02 0.006 24.1 16.7 136 124-284 174-315 (354)
124 3sov_A LRP-6, low-density lipo 37.2 77 0.0026 26.3 6.5 63 206-283 46-109 (318)
125 3sfz_A APAF-1, apoptotic pepti 37.0 2.3E+02 0.0078 28.2 11.0 130 124-284 1023-1158(1249)
126 1ijq_A LDL receptor, low-densi 36.8 1.7E+02 0.0059 23.9 16.0 140 111-278 85-232 (316)
127 2ghs_A AGR_C_1268P; regucalcin 36.5 1.4E+02 0.0049 24.4 8.2 29 207-246 61-89 (326)
128 2z2n_A Virginiamycin B lyase; 36.3 1.5E+02 0.0053 23.1 17.0 139 112-281 149-292 (299)
129 3nol_A Glutamine cyclotransfer 36.2 1.7E+02 0.0059 23.7 14.6 108 114-246 52-165 (262)
130 3s94_A LRP-6, low-density lipo 35.8 2.6E+02 0.009 25.7 15.1 150 110-283 356-509 (619)
131 1got_B GT-beta; complex (GTP-b 35.8 1.8E+02 0.0061 23.7 14.6 133 124-284 162-301 (340)
132 3tc9_A Hypothetical hydrolase; 35.4 2.2E+02 0.0075 24.6 15.8 140 113-283 148-300 (430)
133 3q6k_A 43.2 kDa salivary prote 35.1 2.2E+02 0.0074 24.5 10.0 65 225-293 120-197 (381)
134 3mbr_X Glutamine cyclotransfer 35.1 1.7E+02 0.0059 23.3 10.2 62 173-247 43-105 (243)
135 3ei3_B DNA damage-binding prot 34.4 1.9E+02 0.0067 23.8 12.5 112 154-283 77-193 (383)
136 2iwa_A Glutamine cyclotransfer 34.2 1.9E+02 0.0063 23.5 14.0 109 113-245 30-144 (266)
137 3o4h_A Acylamino-acid-releasin 34.2 1.6E+02 0.0056 26.3 8.7 146 115-282 123-274 (582)
138 1yiq_A Quinohemoprotein alcoho 33.9 2.9E+02 0.01 25.7 12.0 119 113-243 69-200 (689)
139 3vgz_A Uncharacterized protein 33.4 1.9E+02 0.0064 23.3 17.0 146 115-283 101-261 (353)
140 4h5i_A Guanine nucleotide-exch 33.3 2.1E+02 0.0072 23.8 12.1 153 112-284 142-300 (365)
141 1ddw_A GLGF-domain protein hom 33.0 54 0.0019 23.1 4.1 41 125-171 10-51 (120)
142 3q7m_A Lipoprotein YFGL, BAMB; 32.7 2.1E+02 0.0072 23.6 12.1 30 200-241 47-76 (376)
143 3qqz_A Putative uncharacterize 32.5 1.7E+02 0.0057 23.6 7.6 63 207-288 185-255 (255)
144 4a0p_A LRP6, LRP-6, low-densit 32.5 3E+02 0.01 25.3 16.3 97 125-242 14-116 (628)
145 2pm7_B Protein transport prote 31.5 2E+02 0.0067 22.9 13.2 33 263-297 264-296 (297)
146 1pgu_A Actin interacting prote 30.3 2.8E+02 0.0097 24.4 17.2 145 123-284 180-328 (615)
147 4a11_B DNA excision repair pro 29.5 2.3E+02 0.008 23.2 18.6 49 229-285 315-366 (408)
148 1w6s_A Methanol dehydrogenase 29.5 3.3E+02 0.011 24.9 11.4 122 114-243 62-199 (599)
149 2xyi_A Probable histone-bindin 29.4 2.6E+02 0.0089 23.7 12.1 48 229-284 255-309 (430)
150 4ery_A WD repeat-containing pr 29.2 2.1E+02 0.0073 22.6 13.2 131 125-284 44-180 (312)
151 3odt_A Protein DOA1; ubiquitin 29.0 2.1E+02 0.0071 22.4 10.7 139 114-284 155-296 (313)
152 3bws_A Protein LP49; two-domai 28.5 85 0.0029 26.6 5.6 66 206-284 133-200 (433)
153 4gga_A P55CDC, cell division c 28.3 2.7E+02 0.0092 23.5 14.5 50 229-285 345-396 (420)
154 3sfz_A APAF-1, apoptotic pepti 28.2 4.5E+02 0.015 26.0 16.3 143 112-284 624-774 (1249)
155 1i2h_A PSD-ZIP45(homer-1C/VESL 28.2 70 0.0024 24.1 4.2 41 125-171 15-56 (168)
156 3nok_A Glutaminyl cyclase; bet 28.1 2.4E+02 0.0083 22.9 9.2 61 202-281 59-122 (268)
157 3tc9_A Hypothetical hydrolase; 27.6 3E+02 0.01 23.8 13.0 156 110-283 233-429 (430)
158 4hw6_A Hypothetical protein, I 27.2 3.1E+02 0.01 23.8 13.8 138 114-283 152-303 (433)
159 4hw6_A Hypothetical protein, I 27.0 3.1E+02 0.011 23.7 13.8 154 112-283 237-432 (433)
160 3bws_A Protein LP49; two-domai 26.7 2.8E+02 0.0096 23.2 13.2 147 112-283 178-333 (433)
161 1evh_A WH1 domain, protein (ME 26.5 81 0.0028 21.9 4.0 43 125-171 10-52 (112)
162 3mkq_A Coatomer beta'-subunit; 26.0 4E+02 0.014 24.7 12.1 153 108-284 60-217 (814)
163 2be1_A Serine/threonine-protei 25.6 94 0.0032 26.3 5.1 57 172-240 66-133 (339)
164 3amr_A 3-phytase; beta-propell 25.2 3.2E+02 0.011 23.3 14.6 140 125-283 98-262 (355)
165 3nol_A Glutamine cyclotransfer 25.0 2.7E+02 0.0094 22.5 10.0 63 204-282 50-114 (262)
166 3dm0_A Maltose-binding peripla 24.8 4E+02 0.014 24.3 14.7 134 125-284 493-632 (694)
167 2w18_A PALB2, fancn, partner a 24.7 1.2E+02 0.004 26.0 5.5 33 264-298 52-84 (356)
168 3hrp_A Uncharacterized protein 24.5 3.3E+02 0.011 23.2 15.6 148 109-281 136-295 (409)
169 1egx_A VAsp, vasodilator-stimu 24.5 1.1E+02 0.0039 21.2 4.5 43 125-171 10-53 (115)
170 1yfq_A Cell cycle arrest prote 24.3 2.7E+02 0.0092 22.1 15.2 147 112-285 65-226 (342)
171 1ri6_A Putative isomerase YBHE 24.2 2.7E+02 0.0092 22.1 12.5 49 229-284 152-209 (343)
172 4aez_A CDC20, WD repeat-contai 24.2 3.1E+02 0.011 22.8 14.1 51 229-285 328-381 (401)
173 3frx_A Guanine nucleotide-bind 24.2 2.8E+02 0.0096 22.3 13.9 147 112-284 74-227 (319)
174 4ery_A WD repeat-containing pr 24.0 2.7E+02 0.0092 22.0 16.3 47 229-283 260-311 (312)
175 1erj_A Transcriptional repress 23.8 3.2E+02 0.011 22.8 16.4 149 112-284 132-287 (393)
176 3scy_A Hypothetical bacterial 23.8 3E+02 0.01 22.4 14.0 111 154-284 214-337 (361)
177 2z3z_A Dipeptidyl aminopeptida 23.7 4.2E+02 0.014 24.1 15.2 107 125-243 234-350 (706)
178 1pjx_A Dfpase, DIISOPROPYLFLUO 23.3 2E+02 0.0068 22.8 6.7 48 229-284 248-299 (314)
179 2vdu_B TRNA (guanine-N(7)-)-me 23.2 3.5E+02 0.012 23.0 13.5 161 107-286 106-273 (450)
180 2dk7_A Transcription elongatio 22.5 66 0.0022 20.5 2.6 21 123-143 27-47 (73)
181 3mbr_X Glutamine cyclotransfer 22.3 3E+02 0.01 21.9 11.3 66 201-282 24-92 (243)
182 3i2n_A WD repeat-containing pr 22.3 3E+02 0.01 21.9 15.8 139 123-284 136-291 (357)
183 3iz6_a 40S ribosomal protein R 22.2 3.3E+02 0.011 22.5 19.1 143 123-283 177-328 (380)
184 3dr2_A Exported gluconolactona 22.1 1.9E+02 0.0066 23.1 6.4 27 208-246 58-84 (305)
185 1pgu_A Actin interacting prote 21.6 4.1E+02 0.014 23.3 17.1 133 125-283 466-613 (615)
186 3gre_A Serine/threonine-protei 20.9 3.7E+02 0.013 22.5 13.3 50 229-284 193-245 (437)
187 3ow8_A WD repeat-containing pr 20.6 3.4E+02 0.012 21.9 13.8 150 109-284 128-279 (321)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 20.5 3.1E+02 0.011 21.5 13.6 115 125-243 45-167 (314)
189 3zwl_B Eukaryotic translation 20.4 3.3E+02 0.011 21.7 7.9 49 229-284 55-105 (369)
No 1
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.24 E-value=6.7e-12 Score=106.00 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCChhhhh-hhhccchhhHhhcCCHHHHHHHHhhh
Q 042133 1 MKVRERPSIPDEIVDEIIIKLPAKSLM-RFRCVSKIWLHKIDSLAFAIKRSAAA 53 (299)
Q Consensus 1 m~~~~~~~LP~Dll~~Il~rLp~~~l~-r~r~VcK~W~~li~~~~F~~~~~~~~ 53 (299)
|++..+..||+||+.+||++||+++|+ ||++|||+|+.+++++.|.+.++.+.
T Consensus 46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 446788899999999999999999999 99999999999999999999987766
No 2
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.21 E-value=7.4e-12 Score=78.32 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 042133 3 VRERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAI 47 (299)
Q Consensus 3 ~~~~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~ 47 (299)
...+..||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 456889999999999999999999999999999999999887643
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.85 E-value=6.6e-07 Score=76.66 Aligned_cols=163 Identities=12% Similarity=0.036 Sum_probs=109.7
Q ss_pred EeeecceEEeeEeCC------cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceEE
Q 042133 110 SHSAYGLFCFHTRGG------VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRSE 176 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~~ 176 (299)
+...+|-+++. .+ ...+.++||.|++|..+++++ ..+..+.+..++ -++++++ ...++
T Consensus 117 ~~~~~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~ 187 (308)
T 1zgk_A 117 VGVIDGHIYAV--GGSHGCIHHNSVERYEPERDEWHLVAPML--TRRIGVGVAVLN-----RLLYAVGGFDGTNRLNSAE 187 (308)
T ss_dssp EEEETTEEEEE--CCEETTEECCCEEEEETTTTEEEECCCCS--SCCBSCEEEEET-----TEEEEECCBCSSCBCCCEE
T ss_pred EEEECCEEEEE--cCCCCCcccccEEEECCCCCeEeECCCCC--ccccceEEEEEC-----CEEEEEeCCCCCCcCceEE
Confidence 34456766655 32 347899999999999999877 333333333331 2566665 25799
Q ss_pred EEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccc
Q 042133 177 IYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEH 255 (299)
Q Consensus 177 vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~ 255 (299)
+|++.++.|..++..|... .....+.++|.+|.+.+... ......+..||+.+++|..++ +|...
T Consensus 188 ~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~r------ 253 (308)
T 1zgk_A 188 CYYPERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDG------QDQLNSVERYDVETETWTFVAPMKHRR------ 253 (308)
T ss_dssp EEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCS------SSBCCCEEEEETTTTEEEECCCCSSCC------
T ss_pred EEeCCCCeEeeCCCCCCcc--ccceEEEECCEEEEEeCCCC------CCccceEEEEeCCCCcEEECCCCCCCc------
Confidence 9999999999987654322 23457788999999876543 122346999999999999984 33322
Q ss_pred cceeEEE-ECCeEEEEEe-C--CCeEEEEEeccCCCCceeEEEEEe
Q 042133 256 ERFVMIN-LKGCLAIVIL-T--PEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 256 ~~~~~l~-~~g~L~~~~~-~--~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
...... .+|+|+++.. . ...-+||+++- ..++|.++..++
T Consensus 254 -~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~p 297 (308)
T 1zgk_A 254 -SALGITVHQGRIYVLGGYDGHTFLDSVECYDP-DTDTWSEVTRMT 297 (308)
T ss_dssp -BSCEEEEETTEEEEECCBCSSCBCCEEEEEET-TTTEEEEEEECS
T ss_pred -cceEEEEECCEEEEEcCcCCCcccceEEEEcC-CCCEEeecCCCC
Confidence 224455 8999999977 2 23447777763 335899987665
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.83 E-value=8.1e-07 Score=75.66 Aligned_cols=164 Identities=9% Similarity=0.003 Sum_probs=110.3
Q ss_pred EEeeecceEEeeEeCC------cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceE
Q 042133 109 ISHSAYGLFCFHTRGG------VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRS 175 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~ 175 (299)
.+...+|.+++. .+ ...+.++||.|++|..+++++ ..+..+.+..++ -++++++ ...+
T Consensus 107 ~~~~~~~~lyv~--GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 107 GATTLGDMIYVS--GGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAREGAGLVVAS-----GVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EEEEETTEEEEE--CCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCBSCEEEEET-----TEEEEECCBCSSCBCCCE
T ss_pred eEEEECCEEEEE--cccCCCcccceEEEEcCCCCeEEECCCCC--CCcccceEEEEC-----CEEEEECCCCCCcccceE
Confidence 334457777665 32 346999999999999998776 333333333332 2566665 2679
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCcc
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYE 254 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~ 254 (299)
++|+..++.|+.++..|... .....+.++|.+|.+.+... ......+..||+++++|..++ +|...
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~r----- 244 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKR--SGAGVALLNDHIYVVGGFDG------TAHLSSVEAYNIRTDSWTTVTSMTTPR----- 244 (301)
T ss_dssp EEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCBCS------SSBCCCEEEEETTTTEEEEECCCSSCC-----
T ss_pred EEEeCCCCcEEeCCCCCccc--ccceEEEECCEEEEEeCCCC------CcccceEEEEeCCCCcEEECCCCCCcc-----
Confidence 99999999999987654322 23457888999999876543 112346999999999999984 44322
Q ss_pred ccceeEEE-ECCeEEEEEe-C--CCeEEEEEeccCCCCceeEEEEEe
Q 042133 255 HERFVMIN-LKGCLAIVIL-T--PEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 255 ~~~~~~l~-~~g~L~~~~~-~--~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
...... .+|+|+++.. + ...-.||+++- ..++|.++..++
T Consensus 245 --~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~~ 288 (301)
T 2vpj_A 245 --CYVGATVLRGRLYAIAGYDGNSLLSSIECYDP-IIDSWEVVTSMG 288 (301)
T ss_dssp --BSCEEEEETTEEEEECCBCSSSBEEEEEEEET-TTTEEEEEEEEE
T ss_pred --cceeEEEECCEEEEEcCcCCCcccccEEEEcC-CCCeEEEcCCCC
Confidence 123445 8999999877 3 22357788763 335899987765
No 5
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.82 E-value=3.8e-07 Score=78.19 Aligned_cols=148 Identities=8% Similarity=-0.047 Sum_probs=99.8
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceEEEEEcCCCCceecCCCCCccccC
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRSEIYTLGTSSWREISSVPPEDLDN 198 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~~vyss~~~~W~~~~~~~~~~~~~ 198 (299)
..+.++||.|++|..+|+++ ..+..+....++ -++++++ ...+++|+..++.|+.++..|... .
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~ 160 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMS--VPRNRIGVGVID-----GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR--I 160 (308)
T ss_dssp CCEEEEETTTTEEEECCCCS--SCCBTCEEEEET-----TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC--B
T ss_pred ceEEEECCCCCeEeECCCCC--cCccccEEEEEC-----CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc--c
Confidence 46899999999999999887 333333222232 1566665 267999999999999988654322 2
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccccceeEEE-ECCeEEEEEe-C--
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHERFVMIN-LKGCLAIVIL-T-- 273 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~-- 273 (299)
....+.++|.+|.+.+... ......+..||+.+++|..++ +|... ...... .+|+|+++.. .
T Consensus 161 ~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~ 227 (308)
T 1zgk_A 161 GVGVAVLNRLLYAVGGFDG------TNRLNSAECYYPERNEWRMITAMNTIR-------SGAGVCVLHNCIYAAGGYDGQ 227 (308)
T ss_dssp SCEEEEETTEEEEECCBCS------SCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEEEEETTEEEEECCBCSS
T ss_pred ceEEEEECCEEEEEeCCCC------CCcCceEEEEeCCCCeEeeCCCCCCcc-------ccceEEEECCEEEEEeCCCCC
Confidence 3457778999999876543 112346999999999999884 34322 223445 8999999987 2
Q ss_pred CCeEEEEEeccCCCCceeEEEEE
Q 042133 274 PEDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 274 ~~~~~iW~l~~~~~~~W~~~~~i 296 (299)
...-++|+++- ..++|.++..+
T Consensus 228 ~~~~~v~~yd~-~~~~W~~~~~~ 249 (308)
T 1zgk_A 228 DQLNSVERYDV-ETETWTFVAPM 249 (308)
T ss_dssp SBCCCEEEEET-TTTEEEECCCC
T ss_pred CccceEEEEeC-CCCcEEECCCC
Confidence 22345677652 33489886543
No 6
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.80 E-value=9.6e-07 Score=75.42 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=109.3
Q ss_pred EEeeecceEEeeEe-C----CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-----------C
Q 042133 109 ISHSAYGLFCFHTR-G----GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-----------G 172 (299)
Q Consensus 109 ~~~s~~GLl~~~~~-~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-----------~ 172 (299)
.....+|.+++..- + ....+.++||.|++|..+|+++ ..+..+.+..++ -++++++ .
T Consensus 96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 96 AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQRCSHGMVEAN-----GLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEET-----TEEEEECCEESCTTTCEEC
T ss_pred eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCcceeEEEEEC-----CEEEEECCCCCCCCccccc
Confidence 33455776665510 0 1246999999999999998887 333333222221 1566655 1
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSL 251 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~ 251 (299)
..+++|++.++.|+.++..|.. ......+.++|.+|.+.+... ......+.+||+.+++|..+ ++|...
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~p~~r-- 238 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEA--RKNHGLVFVKDKIFAVGGQNG------LGGLDNVEYYDIKLNEWKMVSPMPWKG-- 238 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEECCEET------TEEBCCEEEEETTTTEEEECCCCSCCB--
T ss_pred ceEEEeCCCCCeEEECCCccch--hhcceEEEECCEEEEEeCCCC------CCCCceEEEeeCCCCcEEECCCCCCCc--
Confidence 4689999999999999865432 223457788999999876532 11223589999999999998 444332
Q ss_pred CccccceeEEE-ECCeEEEEEe-C--CCeEEEEEeccCCCCceeEEEEEe
Q 042133 252 SYEHERFVMIN-LKGCLAIVIL-T--PEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 252 ~~~~~~~~~l~-~~g~L~~~~~-~--~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
...... .+|+|+++.. + ...-++|+++- ..++|.++..++
T Consensus 239 -----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~~ 282 (306)
T 3ii7_A 239 -----VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNT-ETDKWVANSKVR 282 (306)
T ss_dssp -----SCCEEEEETTEEEEEECBCSSSBCCEEEEEET-TTTEEEEEEEEE
T ss_pred -----cceeEEEECCEEEEEeCcCCCeeeeeEEEEcC-CCCeEEeCCCcc
Confidence 224455 8999999987 2 23347788763 335899987765
No 7
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.78 E-value=5.5e-07 Score=77.37 Aligned_cols=159 Identities=12% Similarity=0.103 Sum_probs=107.5
Q ss_pred EeeecceEEeeEeCC---------cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--------C
Q 042133 110 SHSAYGLFCFHTRGG---------VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--------G 172 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~---------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--------~ 172 (299)
+...+|.+++. .+ ...+.++||.|++|..+++++ ..+..+.+..++. ++++++ .
T Consensus 94 ~~~~~~~lyv~--GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~-----~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 94 LGEALNSIYVV--GGREIKDGERCLDSVMCYDRLSFKWGESDPLP--YVVYGHTVLSHMD-----LVYVIGGKGSDRKCL 164 (315)
T ss_dssp EEEETTEEEEE--CCEESSTTCCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETT-----EEEEECCBCTTSCBC
T ss_pred EEEECCEEEEE--eCCcCCCCCcccceEEEECCCCCcEeECCCCC--CcccceeEEEECC-----EEEEEeCCCCCCccc
Confidence 34556766655 22 246999999999999999877 3333333333321 466665 2
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSL 251 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~ 251 (299)
..+++|+..++.|+.++..|.. ......+.++|.+|.+.+... ......+.+||+++++|..++ +|...
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~p~~r-- 234 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTA--RSLFGATVHDGRIIVAAGVTD------TGLTSSAEVYSITDNKWAPFEAFPQER-- 234 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSC--CBSCEEEEETTEEEEEEEECS------SSEEEEEEEEETTTTEEEEECCCSSCC--
T ss_pred ceEEEEeCCCCeEEECCCCCCc--hhceEEEEECCEEEEEeccCC------CCccceEEEEECCCCeEEECCCCCCcc--
Confidence 5799999999999998865432 223457788999999987653 122347999999999999994 33322
Q ss_pred CccccceeEEE-ECCeEEEEEe-C-----------CCeEEEEEeccCCCCceeEE
Q 042133 252 SYEHERFVMIN-LKGCLAIVIL-T-----------PEDIEIWMMKDYDRKEWVKE 293 (299)
Q Consensus 252 ~~~~~~~~~l~-~~g~L~~~~~-~-----------~~~~~iW~l~~~~~~~W~~~ 293 (299)
....+. .+|+|+++.. . ...-+||+++- ..++|+++
T Consensus 235 -----~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~-~~~~W~~~ 283 (315)
T 4asc_A 235 -----SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE-EEKKWEGV 283 (315)
T ss_dssp -----BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET-TTTEEEEE
T ss_pred -----cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecC-CCChhhhh
Confidence 224455 8999999987 2 12346888873 33589987
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.77 E-value=4.8e-07 Score=77.75 Aligned_cols=148 Identities=14% Similarity=-0.019 Sum_probs=100.5
Q ss_pred cEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe----------CceEEEEEcCCCCceecCCCCCccc
Q 042133 127 KAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF----------GKRSEIYTLGTSSWREISSVPPEDL 196 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~----------~~~~~vyss~~~~W~~~~~~~~~~~ 196 (299)
.++++||.|++|..+|+++ .++..+.+..++ -++++++ ...+++|+..++.|+.++..|..
T Consensus 68 ~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-- 138 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLP--SPRCLFGLGEAL-----NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-- 138 (315)
T ss_dssp EEEEEETTTTEEEECCCBS--SCEESCEEEEET-----TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC--
T ss_pred ceEEecCCCCeEEECCCCC--cchhceeEEEEC-----CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc--
Confidence 4899999999999999887 333333222221 1455554 15699999999999998865433
Q ss_pred cCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccccceeEEE-ECCeEEEEEe-C
Q 042133 197 DNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHERFVMIN-LKGCLAIVIL-T 273 (299)
Q Consensus 197 ~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~ 273 (299)
......+.++|.+|.+.+... .......+..||+.+++|+.++ +|... ...... .+|+|+++.. .
T Consensus 139 r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~ 206 (315)
T 4asc_A 139 VYGHTVLSHMDLVYVIGGKGS-----DRKCLNKMCVYDPKKFEWKELAPMQTAR-------SLFGATVHDGRIIVAAGVT 206 (315)
T ss_dssp CBSCEEEEETTEEEEECCBCT-----TSCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEEEEETTEEEEEEEEC
T ss_pred ccceeEEEECCEEEEEeCCCC-----CCcccceEEEEeCCCCeEEECCCCCCch-------hceEEEEECCEEEEEeccC
Confidence 233457789999999987632 1223346999999999999984 44332 224445 8999999987 3
Q ss_pred C--CeEEEEEeccCCCCceeEEEEE
Q 042133 274 P--EDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 274 ~--~~~~iW~l~~~~~~~W~~~~~i 296 (299)
. ..-.+|+++- ..++|.++..+
T Consensus 207 ~~~~~~~~~~yd~-~~~~W~~~~~~ 230 (315)
T 4asc_A 207 DTGLTSSAEVYSI-TDNKWAPFEAF 230 (315)
T ss_dssp SSSEEEEEEEEET-TTTEEEEECCC
T ss_pred CCCccceEEEEEC-CCCeEEECCCC
Confidence 2 2346788763 33489987543
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.76 E-value=7.1e-07 Score=76.27 Aligned_cols=166 Identities=13% Similarity=-0.019 Sum_probs=106.7
Q ss_pred EeeecceEEeeEeCC-----cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--------CceEE
Q 042133 110 SHSAYGLFCFHTRGG-----VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--------GKRSE 176 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--------~~~~~ 176 (299)
+...+|.+++. .+ ...+.++||.|++|..+|+++ ..+..+.+..++ -++++++ ...++
T Consensus 51 ~~~~~~~lyv~--GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~ 121 (306)
T 3ii7_A 51 CVFWDNVVYIL--GGSQLFPIKRMDCYNVVKDSWYSKLGPP--TPRDSLAACAAE-----GKIYTSGGSEVGNSALYLFE 121 (306)
T ss_dssp EEEETTEEEEE--CCBSSSBCCEEEEEETTTTEEEEEECCS--SCCBSCEEEEET-----TEEEEECCBBTTBSCCCCEE
T ss_pred EEEECCEEEEE--eCCCCCCcceEEEEeCCCCeEEECCCCC--ccccceeEEEEC-----CEEEEECCCCCCCcEeeeEE
Confidence 33456766655 32 357899999999999998877 333333332332 2566665 15799
Q ss_pred EEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccc
Q 042133 177 IYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEH 255 (299)
Q Consensus 177 vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~ 255 (299)
+|++.++.|+.++..|... .....+.++|.+|.+.+.... .........+.+||+.+++|+.++ +|...
T Consensus 122 ~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r------ 191 (306)
T 3ii7_A 122 CYDTRTESWHTKPSMLTQR--CSHGMVEANGLIYVCGGSLGN--NVSGRVLNSCEVYDPATETWTELCPMIEAR------ 191 (306)
T ss_dssp EEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCEESC--TTTCEECCCEEEEETTTTEEEEECCCSSCC------
T ss_pred EEeCCCCceEeCCCCcCCc--ceeEEEEECCEEEEECCCCCC--CCcccccceEEEeCCCCCeEEECCCccchh------
Confidence 9999999999987654332 234577889999998765430 000001346999999999999994 44322
Q ss_pred cceeEEE-ECCeEEEEEe-CC--CeEEEEEeccCCCCceeEEEEE
Q 042133 256 ERFVMIN-LKGCLAIVIL-TP--EDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 256 ~~~~~l~-~~g~L~~~~~-~~--~~~~iW~l~~~~~~~W~~~~~i 296 (299)
...... .+|+|+++.. .. ..-++|+++- ..++|+++..+
T Consensus 192 -~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~ 234 (306)
T 3ii7_A 192 -KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI-KLNEWKMVSPM 234 (306)
T ss_dssp -BSCEEEEETTEEEEECCEETTEEBCCEEEEET-TTTEEEECCCC
T ss_pred -hcceEEEECCEEEEEeCCCCCCCCceEEEeeC-CCCcEEECCCC
Confidence 224455 8999999976 22 1235666652 33489886543
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.74 E-value=1e-06 Score=75.02 Aligned_cols=162 Identities=10% Similarity=-0.040 Sum_probs=106.6
Q ss_pred EeeecceEEeeEeCC------cccEEEEcccchh---hhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------Cc
Q 042133 110 SHSAYGLFCFHTRGG------VGKAYLCNPLRKE---VLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GK 173 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~------~~~~~V~NP~T~~---~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~ 173 (299)
+...+|.+++. .+ ...++++||.|++ |..+++++ ..+..+.+..++ -++++++ ..
T Consensus 58 ~~~~~~~l~v~--GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~lyv~GG~~~~~~~~ 128 (301)
T 2vpj_A 58 SVSLHDRIYVI--GGYDGRSRLSSVECLDYTADEDGVWYSVAPMN--VRRGLAGATTLG-----DMIYVSGGFDGSRRHT 128 (301)
T ss_dssp EEEETTEEEEE--CCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--SCCBSCEEEEET-----TEEEEECCBCSSCBCC
T ss_pred EEEECCEEEEE--cCCCCCccCceEEEEECCCCCCCeeEECCCCC--CCccceeEEEEC-----CEEEEEcccCCCcccc
Confidence 33456666554 22 2479999999999 99998877 333333332332 2566665 25
Q ss_pred eEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCC
Q 042133 174 RSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLS 252 (299)
Q Consensus 174 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~ 252 (299)
.+++|+..++.|+.++..|.. ......+.++|.+|.+.+... ......+.+||+.+++|..++ +|...
T Consensus 129 ~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~p~~r--- 197 (301)
T 2vpj_A 129 SMERYDPNIDQWSMLGDMQTA--REGAGLVVASGVIYCLGGYDG------LNILNSVEKYDPHTGHWTNVTPMATKR--- 197 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSC--CBSCEEEEETTEEEEECCBCS------SCBCCCEEEEETTTTEEEEECCCSSCC---
T ss_pred eEEEEcCCCCeEEECCCCCCC--cccceEEEECCEEEEECCCCC------CcccceEEEEeCCCCcEEeCCCCCccc---
Confidence 799999999999998765432 223457778999999876543 123346899999999999984 44332
Q ss_pred ccccceeEEE-ECCeEEEEEe-CCC--eEEEEEeccCCCCceeEEEEE
Q 042133 253 YEHERFVMIN-LKGCLAIVIL-TPE--DIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 253 ~~~~~~~~l~-~~g~L~~~~~-~~~--~~~iW~l~~~~~~~W~~~~~i 296 (299)
...... .+|+|+++.. ... .-+||+++- ..++|.++..+
T Consensus 198 ----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~ 240 (301)
T 2vpj_A 198 ----SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI-RTDSWTTVTSM 240 (301)
T ss_dssp ----BSCEEEEETTEEEEECCBCSSSBCCCEEEEET-TTTEEEEECCC
T ss_pred ----ccceEEEECCEEEEEeCCCCCcccceEEEEeC-CCCcEEECCCC
Confidence 224455 8999999987 211 345666652 33489987544
No 11
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.72 E-value=1.6e-06 Score=77.93 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHh
Q 042133 5 ERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSA 51 (299)
Q Consensus 5 ~~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~~~ 51 (299)
.+..||+|++.+||+.|++++|.+++.|||+|+.++.++.+-+....
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 46789999999999999999999999999999999999988876654
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.69 E-value=3.8e-07 Score=78.53 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=97.9
Q ss_pred EEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe---------CceEEEEEcCCCCceecCCCCCccccC
Q 042133 128 AYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF---------GKRSEIYTLGTSSWREISSVPPEDLDN 198 (299)
Q Consensus 128 ~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~---------~~~~~vyss~~~~W~~~~~~~~~~~~~ 198 (299)
++++||.|++|..+|+++ ..+..+.+..++ -++++++ ...+++|++.++.|+.++..|... .
T Consensus 80 ~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~ 150 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLP--SARCLFGLGEVD-----DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV--Y 150 (318)
T ss_dssp EEEEETTTTEEEECSCBS--SCBCSCEEEEET-----TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE--E
T ss_pred EEEEeCCCCcEEECCCCC--ccccccceEEEC-----CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc--c
Confidence 889999999999999887 333333222221 1455554 156899999999999987654332 2
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccccceeEEE-ECCeEEEEEe-CC-
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHERFVMIN-LKGCLAIVIL-TP- 274 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~~- 274 (299)
....+.++|.+|.+.+... +......+..||+.+++|+.++ +|... ...... .+|+|+++.. ..
T Consensus 151 ~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~ 218 (318)
T 2woz_A 151 GHNVISHNGMIYCLGGKTD-----DKKCTNRVFIYNPKKGDWKDLAPMKTPR-------SMFGVAIHKGKIVIAGGVTED 218 (318)
T ss_dssp SCEEEEETTEEEEECCEES-----SSCBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEETTEEEEEEEEETT
T ss_pred ccEEEEECCEEEEEcCCCC-----CCCccceEEEEcCCCCEEEECCCCCCCc-------ccceEEEECCEEEEEcCcCCC
Confidence 3457779999999876532 1122346999999999999984 44322 223445 8999999987 22
Q ss_pred -CeEEEEEeccCCCCceeEEEEE
Q 042133 275 -EDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 275 -~~~~iW~l~~~~~~~W~~~~~i 296 (299)
..-.+|+++ ...++|.++..+
T Consensus 219 ~~~~~~~~yd-~~~~~W~~~~~~ 240 (318)
T 2woz_A 219 GLSASVEAFD-LKTNKWEVMTEF 240 (318)
T ss_dssp EEEEEEEEEE-TTTCCEEECCCC
T ss_pred CccceEEEEE-CCCCeEEECCCC
Confidence 234677776 334489986543
No 13
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.69 E-value=8.4e-07 Score=75.64 Aligned_cols=163 Identities=10% Similarity=0.059 Sum_probs=105.5
Q ss_pred eeecceEEeeEeCC------cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-------CceEEE
Q 042133 111 HSAYGLFCFHTRGG------VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-------GKRSEI 177 (299)
Q Consensus 111 ~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-------~~~~~v 177 (299)
...+|.+++. .+ ...+.++||.|++|..+|+++ ..+..+.+..++ -+++.++ -..+++
T Consensus 58 ~~~~~~lyv~--GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~ 128 (302)
T 2xn4_A 58 VYMAGLVFAV--GGFNGSLRVRTVDSYDPVKDQWTSVANMR--DRRSTLGAAVLN-----GLLYAVGGFDGSTGLSSVEA 128 (302)
T ss_dssp EEETTEEEEE--SCBCSSSBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEET-----TEEEEEEEECSSCEEEEEEE
T ss_pred EEECCEEEEE--eCcCCCccccceEEECCCCCceeeCCCCC--ccccceEEEEEC-----CEEEEEcCCCCCccCceEEE
Confidence 3456666655 32 246899999999999999887 333333222222 1455555 157899
Q ss_pred EEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCcccc
Q 042133 178 YTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHE 256 (299)
Q Consensus 178 yss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~ 256 (299)
|++.++.|+.++..|.. ......+.++|.+|.+.+.... .......+..||+.+++|+.+ ++|...
T Consensus 129 ~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~yd~~~~~W~~~~~~p~~r------- 195 (302)
T 2xn4_A 129 YNIKSNEWFHVAPMNTR--RSSVGVGVVGGLLYAVGGYDVA----SRQCLSTVECYNATTNEWTYIAEMSTRR------- 195 (302)
T ss_dssp EETTTTEEEEECCCSSC--CBSCEEEEETTEEEEECCEETT----TTEECCCEEEEETTTTEEEEECCCSSCC-------
T ss_pred EeCCCCeEeecCCCCCc--ccCceEEEECCEEEEEeCCCCC----CCccccEEEEEeCCCCcEEECCCCcccc-------
Confidence 99999999998765432 2234567789999998765320 001124589999999999998 444322
Q ss_pred ceeEEE-ECCeEEEEEe-CCC--eEEEEEeccCCCCceeEEEEE
Q 042133 257 RFVMIN-LKGCLAIVIL-TPE--DIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 257 ~~~~l~-~~g~L~~~~~-~~~--~~~iW~l~~~~~~~W~~~~~i 296 (299)
...... .+|+|+++.. +.. .-++|+++- ..++|.++..+
T Consensus 196 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~ 238 (302)
T 2xn4_A 196 SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP-TTNAWRQVADM 238 (302)
T ss_dssp BSCEEEEETTEEEEECCBSSSSBCCCEEEEET-TTTEEEEECCC
T ss_pred ccccEEEECCEEEEECCCCCCcccceEEEEeC-CCCCEeeCCCC
Confidence 224455 8999999987 221 235777763 33489987544
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.66 E-value=1.3e-06 Score=75.04 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=105.0
Q ss_pred EeeecceEEeeE-eC-----CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--------CceE
Q 042133 110 SHSAYGLFCFHT-RG-----GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--------GKRS 175 (299)
Q Consensus 110 ~~s~~GLl~~~~-~~-----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--------~~~~ 175 (299)
+...+|-+++.. .. ....+.++||.|++|..+++++ ..+..+.+..++ -++++++ ...+
T Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP--IKVYGHNVISHN-----GMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS--SCEESCEEEEET-----TEEEEECCEESSSCBCCCE
T ss_pred eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC--CcccccEEEEEC-----CEEEEEcCCCCCCCccceE
Confidence 344566665542 11 0246899999999999998776 333322222222 2566665 1469
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCcc
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYE 254 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~ 254 (299)
++|+..++.|+.++..|... .....+.++|.+|.+.+... ......+.+||+++++|..+. +|...
T Consensus 178 ~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~p~~r----- 244 (318)
T 2woz_A 178 FIYNPKKGDWKDLAPMKTPR--SMFGVAIHKGKIVIAGGVTE------DGLSASVEAFDLKTNKWEVMTEFPQER----- 244 (318)
T ss_dssp EEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEEEEEET------TEEEEEEEEEETTTCCEEECCCCSSCC-----
T ss_pred EEEcCCCCEEEECCCCCCCc--ccceEEEECCEEEEEcCcCC------CCccceEEEEECCCCeEEECCCCCCcc-----
Confidence 99999999999987654322 22456788999999976543 112246889999999999984 44332
Q ss_pred ccceeEEE-ECCeEEEEEe-CC-----------CeEEEEEeccCCCCceeEE
Q 042133 255 HERFVMIN-LKGCLAIVIL-TP-----------EDIEIWMMKDYDRKEWVKE 293 (299)
Q Consensus 255 ~~~~~~l~-~~g~L~~~~~-~~-----------~~~~iW~l~~~~~~~W~~~ 293 (299)
....+. .+|+|+++.. .. ..-++|+++- ..++|.++
T Consensus 245 --~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~-~~~~W~~~ 293 (318)
T 2woz_A 245 --SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED-DKKEWAGM 293 (318)
T ss_dssp --BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEET-TTTEEEEE
T ss_pred --cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeC-CCCEehhh
Confidence 224455 8999999876 21 1357888873 33589987
No 15
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.66 E-value=1.3e-06 Score=74.43 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=104.0
Q ss_pred eeecceEEeeEe-CC---cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe---------CceEEE
Q 042133 111 HSAYGLFCFHTR-GG---VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF---------GKRSEI 177 (299)
Q Consensus 111 ~s~~GLl~~~~~-~~---~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~---------~~~~~v 177 (299)
...+|.+++..- .. ...+.++||.|++|..+++++ ..+..+.+..++ -++++++ ...+++
T Consensus 105 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 105 AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN--TRRSSVGVGVVG-----GLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS--SCCBSCEEEEET-----TEEEEECCEETTTTEECCCEEE
T ss_pred EEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC--CcccCceEEEEC-----CEEEEEeCCCCCCCccccEEEE
Confidence 345676655421 11 246899999999999999887 333333222232 1566665 146899
Q ss_pred EEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCcccc
Q 042133 178 YTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHE 256 (299)
Q Consensus 178 yss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~ 256 (299)
|+..++.|+.++..|... .....+.++|.+|.+.+... ......+..||+++++|..++ +|.. .
T Consensus 178 yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~~~~-r------ 242 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRR--SGAGVGVLNNLLYAVGGHDG------PLVRKSVEVYDPTTNAWRQVADMNMC-R------ 242 (302)
T ss_dssp EETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCBSS------SSBCCCEEEEETTTTEEEEECCCSSC-C------
T ss_pred EeCCCCcEEECCCCcccc--ccccEEEECCEEEEECCCCC------CcccceEEEEeCCCCCEeeCCCCCCc-c------
Confidence 999999999987654322 23457788999999876543 122346999999999999984 4332 1
Q ss_pred ceeEEE-ECCeEEEEEe-C--CCeEEEEEeccCCCCceeEEE
Q 042133 257 RFVMIN-LKGCLAIVIL-T--PEDIEIWMMKDYDRKEWVKEY 294 (299)
Q Consensus 257 ~~~~l~-~~g~L~~~~~-~--~~~~~iW~l~~~~~~~W~~~~ 294 (299)
....+. .+|+|+++.. . ...-+||+++- ..++|.++.
T Consensus 243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~-~~~~W~~~~ 283 (302)
T 2xn4_A 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP-TTDKWTVVS 283 (302)
T ss_dssp BSCEEEEETTEEEEECCBCSSSBCCCEEEEET-TTTEEEECS
T ss_pred ccCeEEEECCEEEEECCcCCCcccccEEEEcC-CCCeEEECC
Confidence 123455 8999999877 2 22335666652 234798763
No 16
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.65 E-value=9.3e-06 Score=73.04 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCC-HHHHHHH
Q 042133 6 RPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDS-LAFAIKR 49 (299)
Q Consensus 6 ~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~-~~F~~~~ 49 (299)
+..||+|++.+||+.||+++|.+++.|||+|+.++.+ +...+..
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4569999999999999999999999999999999988 6655443
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.45 E-value=3.4e-06 Score=75.57 Aligned_cols=46 Identities=26% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCCCHH----HHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHh
Q 042133 6 RPSIPDE----IVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSA 51 (299)
Q Consensus 6 ~~~LP~D----ll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~~~ 51 (299)
+..||+| ++.+||+.|++++|.++++|||+|+.++.++.+-+....
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~ 60 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE 60 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 3469999 999999999999999999999999999988776665444
No 18
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.39 E-value=8.2e-06 Score=71.16 Aligned_cols=157 Identities=6% Similarity=-0.067 Sum_probs=92.3
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcc-eEEEeEeCCCCCEEEEEEe--------CceEEEEEc--CCCCceecCCCCCc
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLD-FYAMGFDGTTSTYKIVRVF--------GKRSEIYTL--GTSSWREISSVPPE 194 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~l~~d~~~~~ykvv~~~--------~~~~~vyss--~~~~W~~~~~~~~~ 194 (299)
..+.++||.|++|..+++++ ..... +....++ =++++++ ...+++|+. .++.|+.+...+..
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p--~~~~~~~~~~~~~-----~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~ 240 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESP--WYGTAGAAVVNKG-----DKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP 240 (357)
T ss_dssp CEEEEEETTTTEEEEEEECS--SCCCBSCEEEEET-----TEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT
T ss_pred ccEEEEeCCCCcEEECCCCC--CCCcccccEEEEC-----CEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC
Confidence 47999999999999987766 22222 2222221 1455554 246777876 88999998766333
Q ss_pred cccCCCCceEECCeeEEeecCCCccC-----------ccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE
Q 042133 195 DLDNMSNGVSAYGDMHWADDDHFSFG-----------QRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 195 ~~~~~~~~v~~~G~~yw~~~~~~~~~-----------~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~ 262 (299)
........+.++|.+|.+.+....-. .........+.+||+++++|+.+ ++|.... .....
T Consensus 241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-------~~~~~ 313 (357)
T 2uvk_A 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-------YGVSL 313 (357)
T ss_dssp TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-------SSEEE
T ss_pred cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-------cceeE
Confidence 22233457889999999876432000 00111123578999999999998 5554322 13335
Q ss_pred -ECCeEEEEEe-C-CC--eEEEEEeccCCCCceeEEEEEe
Q 042133 263 -LKGCLAIVIL-T-PE--DIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 263 -~~g~L~~~~~-~-~~--~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
.+|+|+++.. + .+ .=+||.++ .+.++|.+....+
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~-~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLIT-VKDNKVTVQNLEH 352 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEE-C-CCSCEEEC---
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEE-EcCcEeEeeeccc
Confidence 8999999988 2 22 35788776 4456898865443
No 19
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.39 E-value=5.1e-05 Score=66.05 Aligned_cols=154 Identities=11% Similarity=0.044 Sum_probs=92.7
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC---------------------------------
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG--------------------------------- 172 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--------------------------------- 172 (299)
..+.++||.|++|..+++++ ...+..+.+..++ -+|++++.
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHN-----GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDK 159 (357)
T ss_dssp CCEEEEETTTTEEEECSCCC-SSCCSSEEEEEET-----TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred ccEEEEeCCCCcEEECCCCC-CcccccceEEEEC-----CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccc
Confidence 46999999999999998865 1112222222222 15666651
Q ss_pred --------ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEEC--CCCeeee
Q 042133 173 --------KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDF--KKEEFKR 242 (299)
Q Consensus 173 --------~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~--~~~~~~~ 242 (299)
..+++|+..++.|+.+...|.... .....+.++|.+|.+.+... .......+..||+ ++.+|+.
T Consensus 160 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~-~~~~~~~~~~~iyv~GG~~~-----~~~~~~~v~~~d~d~~~~~W~~ 233 (357)
T 2uvk_A 160 KAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT-AGAAVVNKGDKTWLINGEAK-----PGLRTDAVFELDFTGNNLKWNK 233 (357)
T ss_dssp CGGGGCCCCEEEEEETTTTEEEEEEECSSCCC-BSCEEEEETTEEEEECCEEE-----TTEECCCEEEEECC---CEEEE
T ss_pred cccccCCcccEEEEeCCCCcEEECCCCCCCCc-ccccEEEECCEEEEEeeecC-----CCcccCceEEEEecCCCCcEEe
Confidence 479999999999999876543221 22457778999999876432 0111234777776 8999998
Q ss_pred e-CCCCCCCCCccccceeEEE-ECCeEEEEEe-C-CC------------------eEEEEEeccCCCCceeEEEEEe
Q 042133 243 T-PTPDFGSLSYEHERFVMIN-LKGCLAIVIL-T-PE------------------DIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 243 i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~-~-~~------------------~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
+ ++|.... ....... .+|+|+++.. . .. .-.+|+++- ..++|.++..++
T Consensus 234 ~~~~~~~~~-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~-~~~~W~~~~~~p 304 (357)
T 2uvk_A 234 LAPVSSPDG-----VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW-HNGKWDKSGELS 304 (357)
T ss_dssp CCCSSTTTC-----CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEEC-C---CEEEEECS
T ss_pred cCCCCCCcc-----cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEec-CCCceeeCCCCC
Confidence 8 4443322 1223455 8999999876 1 11 135666652 234899986654
No 20
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.22 E-value=4.9e-07 Score=75.66 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHhhhcc
Q 042133 3 VRERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASA 55 (299)
Q Consensus 3 ~~~~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~ 55 (299)
+..++.||+|++..||+.|++++|.++.+|||+||.+..++..-+.++.+..+
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 34567899999999999999999999999999999999999999887776554
No 21
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.88 E-value=6.4e-06 Score=71.19 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHH
Q 042133 3 VRERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLA 44 (299)
Q Consensus 3 ~~~~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~ 44 (299)
...|+.||+|++.+||++|+.+++.+++.|||+|+.++.++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 467899999999999999999999999999999999986554
No 22
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.73 E-value=1.2e-05 Score=74.88 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhh
Q 042133 1 MKVRERPSIPDEIVDEIIIKLP-AKSLMRFRCVSKIWLHK 39 (299)
Q Consensus 1 m~~~~~~~LP~Dll~~Il~rLp-~~~l~r~r~VcK~W~~l 39 (299)
|+...|+.||+|++.+||++|| .+++.+++.|||+|+++
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 6778899999999999999999 99999999999999988
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.71 E-value=0.00062 Score=64.91 Aligned_cols=161 Identities=11% Similarity=0.021 Sum_probs=97.3
Q ss_pred ecceEEeeEeCC-----cccEEEEcccchhhhcCC-CCC---CCCCCcceEEEeEeCCCCCEEEEEEe--------CceE
Q 042133 113 AYGLFCFHTRGG-----VGKAYLCNPLRKEVLELP-QAT---TGGSWLDFYAMGFDGTTSTYKIVRVF--------GKRS 175 (299)
Q Consensus 113 ~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~lP-~~~---~~~~~~~~~~l~~d~~~~~ykvv~~~--------~~~~ 175 (299)
.+|.+++. .+ ...+.++||.|++|..++ +.+ ....+..+.+..++. +-++++++ -..+
T Consensus 396 ~~~~iyv~--GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~---~~~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 396 AGNDVFYM--GGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR---NNQLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CSSCEEEE--CCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT---TTEEEEECCBSSTTCBCCCC
T ss_pred ECCEEEEE--CCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc---CCEEEEEcCCCCCCCccccE
Confidence 45655554 32 346999999999999988 521 112233333333210 11466665 1578
Q ss_pred EEEEcCCCCceecCCCCCccccCCCCceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCC----CCCCC
Q 042133 176 EIYTLGTSSWREISSVPPEDLDNMSNGVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPT----PDFGS 250 (299)
Q Consensus 176 ~vyss~~~~W~~~~~~~~~~~~~~~~~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~----P~~~~ 250 (299)
++|+..++.|+.++..|.. ......+.+ +|.+|.+.+... .. .+.+||+.+++|..++. |....
T Consensus 471 ~~yd~~t~~W~~~~~~p~~--R~~h~~~~~~~~~iyv~GG~~~-------~~--~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHT--RFRHSACSLPDGNVLILGGVTE-------GP--AMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp EEEETTTTEEEECCCCSBC--CBSCEEEECTTSCEEEECCBCS-------SC--SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred EEEeCCCCcEEECCCCCCC--cccceEEEEcCCEEEEECCCCC-------CC--CEEEEECCCCceEEccCCCCCCCccc
Confidence 9999999999999765432 222345554 999999877653 11 69999999999999863 33322
Q ss_pred CCccccceeEE-E-ECCeEEEEEe-C-C---CeEEEEEeccCCCCc------eeEEEE
Q 042133 251 LSYEHERFVMI-N-LKGCLAIVIL-T-P---EDIEIWMMKDYDRKE------WVKEYK 295 (299)
Q Consensus 251 ~~~~~~~~~~l-~-~~g~L~~~~~-~-~---~~~~iW~l~~~~~~~------W~~~~~ 295 (299)
.....+ . .+|+|++++. . . ..-++|+++-. .++ |.++..
T Consensus 540 -----~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 540 -----VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD-AENATEPITVIKKLQ 591 (695)
T ss_dssp -----BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC-TTCSSCCEEEEEEEE
T ss_pred -----ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc-CCccccceEEEEcCC
Confidence 111122 2 2289999987 2 1 12356665521 234 887765
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.60 E-value=0.0013 Score=62.69 Aligned_cols=162 Identities=11% Similarity=0.089 Sum_probs=97.8
Q ss_pred cceEEeeE-eCC----cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC----ceEEEEEcCCCC
Q 042133 114 YGLFCFHT-RGG----VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG----KRSEIYTLGTSS 184 (299)
Q Consensus 114 ~GLl~~~~-~~~----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~----~~~~vyss~~~~ 184 (299)
+|-+++.. ... ...+.++||.|++|..+++++ .++..+.+.... +-+|+++++ ..+++|+..++.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p--~~R~~h~~~~~~----~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS--HTRFRHSACSLP----DGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS--BCCBSCEEEECT----TSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC--CCcccceEEEEc----CCEEEEECCCCCCCCEEEEECCCCc
Confidence 67665551 011 246899999999999998887 333333222211 225666662 279999999999
Q ss_pred ceecCCCCCc-cccCCCCceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCCe------eeeeC-CCCCCCCCc
Q 042133 185 WREISSVPPE-DLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE------FKRTP-TPDFGSLSY 253 (299)
Q Consensus 185 W~~~~~~~~~-~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~------~~~i~-~P~~~~~~~ 253 (299)
|..+...... ........+.++ |.+|.+.+... .+......+.+||+.+++ |..+. .|+...
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~----~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R--- 597 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM----DQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR--- 597 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCT----TSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC---
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCC----CCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc---
Confidence 9998753111 111122345657 88999876532 011233579999999999 77773 332222
Q ss_pred cccceeEEE-EC-CeEEEEEe-CC-----CeEEEEEeccCCCCceeE
Q 042133 254 EHERFVMIN-LK-GCLAIVIL-TP-----EDIEIWMMKDYDRKEWVK 292 (299)
Q Consensus 254 ~~~~~~~l~-~~-g~L~~~~~-~~-----~~~~iW~l~~~~~~~W~~ 292 (299)
...... .+ |+|++++. .. ..-+||+++- ..++|..
T Consensus 598 ---~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~-~t~~W~~ 640 (695)
T 2zwa_A 598 ---YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP-LSETLTS 640 (695)
T ss_dssp ---BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET-TTTEEEE
T ss_pred ---ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC-CCCeEEE
Confidence 123334 56 99999977 21 2345677662 3347973
No 25
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.31 E-value=0.0065 Score=57.37 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=46.7
Q ss_pred eecceEEeeEeCC--cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC--------ceEEEEEcC
Q 042133 112 SAYGLFCFHTRGG--VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG--------KRSEIYTLG 181 (299)
Q Consensus 112 s~~GLl~~~~~~~--~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--------~~~~vyss~ 181 (299)
..+|.+++. .+ ...+.++||.|++|..+++++ ..+..+.+..+ + +-||++++. ..+++|++.
T Consensus 251 ~~~g~lyv~--GG~~~~~v~~yd~~t~~W~~~~~~~--~~R~~~s~~~~-~---dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 251 DGNGQIVVT--GGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATM-S---DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CTTSCEEEE--CSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEEC-T---TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CCCCCEEEe--CCCCCCceEEecCcCCceeECCCCC--ccccccceEEe-c---CCeEEEEeCcccCCcccccceEeCCC
Confidence 457877776 33 347999999999999999877 33333322222 0 114555551 578999999
Q ss_pred CCCceec
Q 042133 182 TSSWREI 188 (299)
Q Consensus 182 ~~~W~~~ 188 (299)
++.|..+
T Consensus 323 t~~W~~~ 329 (656)
T 1k3i_A 323 SKTWTSL 329 (656)
T ss_dssp TTEEEEE
T ss_pred CCcceeC
Confidence 9999886
No 26
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.19 E-value=0.0033 Score=59.42 Aligned_cols=156 Identities=9% Similarity=-0.065 Sum_probs=92.5
Q ss_pred CeEEEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCC-----CCCcceEEEeEeCCCCCEEEEEEeC--------
Q 042133 106 SNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTG-----GSWLDFYAMGFDGTTSTYKIVRVFG-------- 172 (299)
Q Consensus 106 ~~~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~-----~~~~~~~~l~~d~~~~~ykvv~~~~-------- 172 (299)
..++++..+|-++.. .....+..+||.++.|......... .......+..|+... -+|++++.
T Consensus 351 ~iyv~Gg~~g~~~~~--~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~--~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 351 HAWLFGWKKGSVFQA--GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK--GKILTFGGSPDYQDSD 426 (656)
T ss_dssp SCCEEECGGGCEEEC--CSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT--TEEEEECCBSSSSSSB
T ss_pred ceEEEECCCCcEEEe--cCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC--CeEEEEeCCCCCCCCC
Confidence 346777777776655 4466889999999987643221100 011122444454322 26666651
Q ss_pred --c---eEEEEEcCCCCceecC--CCCCccccCCCCceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC
Q 042133 173 --K---RSEIYTLGTSSWREIS--SVPPEDLDNMSNGVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP 244 (299)
Q Consensus 173 --~---~~~vyss~~~~W~~~~--~~~~~~~~~~~~~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~ 244 (299)
. .+++|+..++.|..+. .+|.. . .....+.+ ||.+|.+.+.....+.........+..||+++.+|+.+.
T Consensus 427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R-~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSPNTVFASNGLYFA-R-TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSC-C-BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred cCCcceEEEcCCCCCCCeeEEccCCCCCC-c-ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 1 6889999999999876 33222 1 12334566 999999877542111111223356899999999999884
Q ss_pred -CCCCCCCCccccceeEEE-ECCeEEEEEe
Q 042133 245 -TPDFGSLSYEHERFVMIN-LKGCLAIVIL 272 (299)
Q Consensus 245 -~P~~~~~~~~~~~~~~l~-~~g~L~~~~~ 272 (299)
+|.... .....+. .+|+++++..
T Consensus 505 ~~~~~R~-----~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 505 PNSIVRV-----YHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCSSCCC-----TTEEEEECTTSCEEEEEC
T ss_pred CCCCccc-----cccHhhcCCCcEEEecCC
Confidence 443221 1222333 5999988877
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.88 E-value=0.00039 Score=64.66 Aligned_cols=33 Identities=12% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHhcC-ChhhhhhhhccchhhHhh
Q 042133 7 PSIPDEIVDEIIIKL-PAKSLMRFRCVSKIWLHK 39 (299)
Q Consensus 7 ~~LP~Dll~~Il~rL-p~~~l~r~r~VcK~W~~l 39 (299)
..||||++.+||++| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999987
No 28
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.06 E-value=4.3 Score=34.44 Aligned_cols=137 Identities=10% Similarity=0.074 Sum_probs=72.3
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCc
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNG 202 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~ 202 (299)
.+..+.|||..+++....-... ........+.+.+..+. .++... +..+.+++..+...+.......... .-..
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~v~~ 168 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGM--GPGDAITGMKFNQFNTN-QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDY--WYCC 168 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCC--STTCBEEEEEEETTEEE-EEEEEETTTEEEEEETTSCEEEEEECCCCSSC--CEEE
T ss_pred CCCeEEEEeCCCcccceeeecC--CcCCceeEEEeCCCCCC-EEEEEeCCCEEEEEECCCCceEEEeccCCCCC--CeEE
Confidence 3667888888877655433221 11112255666553322 233223 6889999988765554433211000 0011
Q ss_pred eE--ECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCe-EEEEEeCCCeE
Q 042133 203 VS--AYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGC-LAIVILTPEDI 277 (299)
Q Consensus 203 v~--~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~-L~~~~~~~~~~ 277 (299)
+. -+|.....+..+. .|..+|+..+....+..... .-..+. .+|+ +.+++...+.+
T Consensus 169 ~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 169 VDVSVSRQMLATGDSTG-----------RLLLLGLDGHEIFKEKLHKA--------KVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp EEEETTTTEEEEEETTS-----------EEEEEETTSCEEEEEECSSS--------CEEEEEECSSCTTEEEEEETTSEE
T ss_pred EEECCCCCEEEEECCCC-----------CEEEEECCCCEEEEeccCCC--------cEEEEEECCCCCCEEEEEeCCCEE
Confidence 11 1344333333332 68999996665554443221 112333 5566 77777788899
Q ss_pred EEEEecc
Q 042133 278 EIWMMKD 284 (299)
Q Consensus 278 ~iW~l~~ 284 (299)
.||.+..
T Consensus 230 ~iwd~~~ 236 (383)
T 3ei3_B 230 KLWDLRN 236 (383)
T ss_dssp EEEEGGG
T ss_pred EEEeCCC
Confidence 9999875
No 29
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=90.81 E-value=4.5 Score=34.50 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccC-CCC--ceeEEEEEec
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDY-DRK--EWVKEYKITH 298 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~-~~~--~W~~~~~i~~ 298 (299)
.|..+|+.+.+.....+..+.. .-..|. .+|++.+.+...++++||.+.+. ... .|.++..+++
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~------~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~ 360 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSF------AITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKISKLEH 360 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSS------CEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-------------
T ss_pred EEEEEECCCCcEEEEecCcccC------CEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccceeeec
Confidence 5899999887653222221211 113344 78998887779999999999643 222 5777777654
No 30
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=90.26 E-value=4.6 Score=33.80 Aligned_cols=122 Identities=10% Similarity=0.087 Sum_probs=62.0
Q ss_pred EEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCceEEC----CeeEEeecCCCccCccCCCCcc
Q 042133 154 YAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAY----GDMHWADDDHFSFGQRKGVDNC 228 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~----G~~yw~~~~~~~~~~~~~~~~~ 228 (299)
..+.+.+..+.-.++... +..+.+|+..++.|..+.....+.. .-..+.+. |.....+..+.
T Consensus 59 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d~----------- 125 (379)
T 3jrp_A 59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSDG----------- 125 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTS-----------
T ss_pred EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc--ceEEEEeCCCCCCCEEEEecCCC-----------
Confidence 455554432222333333 6789999999988765543211100 01122222 33333333332
Q ss_pred EEEEEECCCCee-eeeCCCCCCCCCccccceeEEE--E-------------CCeEEEEEeCCCeEEEEEeccCCCCceeE
Q 042133 229 VIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN--L-------------KGCLAIVILTPEDIEIWMMKDYDRKEWVK 292 (299)
Q Consensus 229 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~--~-------------~g~L~~~~~~~~~~~iW~l~~~~~~~W~~ 292 (299)
.|..+|+.+... ..+.+..+.. .-..+. . +|.+.+++...+.+.||.+.... ..|..
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 198 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAI------GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVL 198 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTT------CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT-TEEEE
T ss_pred cEEEEecCCCCceeeEEecCCCC------ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-cceee
Confidence 688899887632 2222211111 112222 2 58888888888899999987422 24544
Q ss_pred EEE
Q 042133 293 EYK 295 (299)
Q Consensus 293 ~~~ 295 (299)
...
T Consensus 199 ~~~ 201 (379)
T 3jrp_A 199 EST 201 (379)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 31
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=90.25 E-value=8.3 Score=33.37 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=79.5
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSV 191 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~ 191 (299)
|.+++|-.. . +..++|||..|++...+-... ........+.+.+.. .|-++.-.+..+.+++..++.-...-..
T Consensus 114 S~~n~lAvg--l-d~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 114 SSGNVLAVA--L-DNSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp CTTSEEEEE--E-TTEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEE--e-CCEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence 556665444 3 678999999999876543322 112222566666643 3322222278899999887642111110
Q ss_pred CCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEE
Q 042133 192 PPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAI 269 (299)
Q Consensus 192 ~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~ 269 (299)
+ ......+..+|.+...+.... .+..+|..........+..+.. ....+. .+|+..+
T Consensus 188 --h--~~~v~~~s~~~~~l~sgs~d~-----------~i~~~d~~~~~~~~~~~~~h~~------~~~~~~~~~~g~~l~ 246 (420)
T 4gga_A 188 --H--SARVGSLSWNSYILSSGSRSG-----------HIHHHDVRVAEHHVATLSGHSQ------EVCGLRWAPDGRHLA 246 (420)
T ss_dssp --C--SSCEEEEEEETTEEEEEETTS-----------EEEEEETTSSSCEEEEEECCSS------CEEEEEECTTSSEEE
T ss_pred --C--CCceEEEeeCCCEEEEEeCCC-----------ceeEeeecccceeeEEeccccc------ceeeeeecCCCCeee
Confidence 0 001124455665444444433 6778887765444333332221 112233 6777777
Q ss_pred EEeCCCeEEEEEecc
Q 042133 270 VILTPEDIEIWMMKD 284 (299)
Q Consensus 270 ~~~~~~~~~iW~l~~ 284 (299)
.....+.+.||....
T Consensus 247 s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 247 SGGNDNLVNVWPSAP 261 (420)
T ss_dssp EEETTSCEEEEESSC
T ss_pred eeeccccceEEeecc
Confidence 777888899998764
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=89.31 E-value=5.9 Score=34.54 Aligned_cols=138 Identities=10% Similarity=0.085 Sum_probs=70.6
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
..+..+.|||..+++...+-... ........+.|.|..+.+ ++... +..+.+++.+++.-+.......... ...
T Consensus 139 s~dg~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~--~~~ 213 (435)
T 4e54_B 139 SKGGDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQ-FYASSMEGTTRLQDFKGNILRVFASSDTINI--WFC 213 (435)
T ss_dssp ETTSCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTE-EEEECSSSCEEEEETTSCEEEEEECCSSCSC--CCC
T ss_pred eCCCEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCE-EEEEeCCCEEEEeeccCCceeEEeccCCCCc--cEE
Confidence 34678999999887654322211 111112566676654443 33333 6788899887765544332211000 011
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCe-EEEEEeCCCe
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGC-LAIVILTPED 276 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~-L~~~~~~~~~ 276 (299)
.+.+ +|.+...+..+. .|..+|+.++....+.... ..-..+. .+|. +++.+...+.
T Consensus 214 ~~~~~~~~~~l~~g~~dg-----------~i~~wd~~~~~~~~~~~h~--------~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVG-----------NVILLNMDGKELWNLRMHK--------KKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp CEEEETTTTEEEEECSSS-----------BEEEEESSSCBCCCSBCCS--------SCEEEEEECTTCSSEEEEEETTSB
T ss_pred EEEECCCCCEEEEEeCCC-----------cEeeeccCcceeEEEeccc--------ceEEeeeecCCCceEEEEecCcce
Confidence 2222 454444443332 5888998766543332211 1112333 3444 5555557889
Q ss_pred EEEEEecc
Q 042133 277 IEIWMMKD 284 (299)
Q Consensus 277 ~~iW~l~~ 284 (299)
+.||-+..
T Consensus 275 v~iwd~~~ 282 (435)
T 4e54_B 275 VKIWDLRQ 282 (435)
T ss_dssp CCEEETTT
T ss_pred eeEEeccc
Confidence 99998764
No 33
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=88.08 E-value=11 Score=31.53 Aligned_cols=154 Identities=10% Similarity=0.012 Sum_probs=80.9
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCC-----CCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCce
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTG-----GSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWR 186 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~-----~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~ 186 (299)
+|.+++.......++.++++..+....+...... .......++.+|+..+. +++.. ...+.+|+..++...
T Consensus 154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~--l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ--LCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE--EEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE--EEEEECCCCEEEEEECCCCcEE
Confidence 7888777311367888888644333333321100 00111278888876442 33333 578999999876653
Q ss_pred ecCCCC-Cc-----cccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeE
Q 042133 187 EISSVP-PE-----DLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVM 260 (299)
Q Consensus 187 ~~~~~~-~~-----~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~ 260 (299)
..-..+ .. ........+..+|.+|..... ...|..+|..+.+....--+..... .....
T Consensus 232 ~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~-----------~~~v~~~~~~~g~~~~~~~~~~~~~----~~p~~ 296 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQE-----------PVQGFVMNFSSGEIIDVFKPVRKHF----DMPHD 296 (329)
T ss_dssp EEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSC-----------CCCEEEEETTTCCEEEEECCSSSCC----SSEEE
T ss_pred EEEeccccCCCcceeeecCCEEEEeCCCEEeccCC-----------CcEEEEEEcCCCeEEEEEcCCCCcc----CCeeE
Confidence 221111 00 000011122224444332222 2369999988876654422211111 22334
Q ss_pred EE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 261 IN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 261 l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
|. .+|.|+++....+.+.+|.++.
T Consensus 297 ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 297 IVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCc
Confidence 44 7788888888888999998874
No 34
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.65 E-value=14 Score=31.54 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=73.1
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCCCCccccCCCCce
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGV 203 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v 203 (299)
.+..+.|||..+++...+-... .......+.+.+.. .+-++.-.+..+.+|+..++.-...-.... ..-..+
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~---~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~ 182 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETD---ESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQ----ARVGCL 182 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECC---TTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCS----SCEEEE
T ss_pred CCCeEEEeeCCCCcEeEeeecC---CCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEEEecCCC----CceEEE
Confidence 3778999999998765433321 11122555666532 332222226789999988764321111100 011244
Q ss_pred EECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEE
Q 042133 204 SAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWM 281 (299)
Q Consensus 204 ~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~ 281 (299)
.++|.....+..+. .|..+|+.+..-....+..+.. .-..+. .+|++.+++...+.+.||.
T Consensus 183 ~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 183 SWNRHVLSSGSRSG-----------AIHHHDVRIANHQIGTLQGHSS------EVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp EEETTEEEEEETTS-----------EEEEEETTSSSCEEEEEECCSS------CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EECCCEEEEEcCCC-----------CEEEEecccCcceeeEEcCCCC------CeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 55665555444443 6999999854322222222211 112333 5778777777888999998
Q ss_pred ecc
Q 042133 282 MKD 284 (299)
Q Consensus 282 l~~ 284 (299)
+..
T Consensus 246 ~~~ 248 (401)
T 4aez_A 246 ARS 248 (401)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=86.20 E-value=13 Score=30.83 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=35.9
Q ss_pred EEEEEECCCCe----eeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccCCCCceeEEEEE
Q 042133 229 VIISFDFKKEE----FKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKI 296 (299)
Q Consensus 229 ~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~~~~~W~~~~~i 296 (299)
.|..+|+.+.+ ...+...... ..-..+. .+|++.+++...+.+.||.++.. +.|.....+
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~ 297 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFP------DVLWRASWSLSGNVLALSGGDNKVTLWKENLE--GKWEPAGEV 297 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCS------SCEEEEEECSSSCCEEEEESSSSEEEEEEEET--TEEEEEEEE
T ss_pred EEEEEeCCCCCccceeeeeccccCC------CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC--Cccccccce
Confidence 58888888763 2222221111 1122333 67887777778889999999853 357766554
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=85.79 E-value=3.6 Score=34.79 Aligned_cols=136 Identities=10% Similarity=0.037 Sum_probs=62.8
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC-ceecCCCCCccccCCCC
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS-WREISSVPPEDLDNMSN 201 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~-W~~~~~~~~~~~~~~~~ 201 (299)
.+..+.|||..++.+..+-... ........+.+.+.. + .++... +..+.+|+..++. |........+.. .-.
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~-~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~--~v~ 104 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKS-N-RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR--AAT 104 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTT-C-CEEEEETTSSEEEC------CCCCEEECCCCSS--CEE
T ss_pred CCCEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCC-C-EEEEEeCCCeEEEEEcCCCCceeeeeEecccCC--ceE
Confidence 3567788888877543333332 111222556666543 2 233333 6789999988876 544332211100 001
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCe----eeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeC
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE----FKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILT 273 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~ 273 (299)
.+.+ +|.....+..+. .|..+|+.+.+ ...+.-|... .-..+. .+|++.+++..
T Consensus 105 ~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 105 FVRWSPNEDKFAVGSGAR-----------VISVCYFEQENDWWVSKHLKRPLRS-------TILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp EEECCTTSSCCEEEESSS-----------CEEECCC-----CCCCEEECSSCCS-------CEEEEEECTTSSEEEEEES
T ss_pred EEEECCCCCEEEEEecCC-----------eEEEEEECCcccceeeeEeecccCC-------CeEEEEEcCCCCEEEEEeC
Confidence 1221 344333333222 48888888765 2333332111 123344 57887777778
Q ss_pred CCeEEEEEec
Q 042133 274 PEDIEIWMMK 283 (299)
Q Consensus 274 ~~~~~iW~l~ 283 (299)
.+.+.||.++
T Consensus 167 d~~i~iwd~~ 176 (377)
T 3dwl_C 167 DRKAYVLSAY 176 (377)
T ss_dssp SSCEEEEEEC
T ss_pred CCEEEEEEEE
Confidence 8899999985
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=85.27 E-value=9.4 Score=31.84 Aligned_cols=137 Identities=10% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
..+..+.|||..++++..+-... ........+.+.+.. ++ ++... +..+.+|+..++.+.......... ..-.
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~-~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~v~ 100 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWAPDS-NR-IVTCGTDRNAYVWTLKGRTWKPTLVILRIN--RAAR 100 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEETTT-TE-EEEEETTSCEEEEEEETTEEEEEEECCCCS--SCEE
T ss_pred eCCCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEeCCC-CE-EEEEcCCCeEEEEECCCCeeeeeEEeecCC--Ccee
Confidence 34667888888777532221111 111122556666632 32 22222 678999998887765432211000 0001
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCe----eeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeC
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE----FKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILT 273 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~ 273 (299)
.+.+ +|.....+..+. .|..+|+.+.+ ...+..+... .-..+. .+|++.+++..
T Consensus 101 ~~~~~~~~~~l~~~~~d~-----------~v~i~d~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 101 CVRWAPNEKKFAVGSGSR-----------VISICYFEQENDWWVCKHIKKPIRS-------TVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp EEEECTTSSEEEEEETTS-----------SEEEEEEETTTTEEEEEEECTTCCS-------CEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCC-----------EEEEEEecCCCcceeeeeeecccCC-------CeeEEEEcCCCCEEEEEcC
Confidence 2222 344333333322 47777777654 2222222111 112333 57777777778
Q ss_pred CCeEEEEEec
Q 042133 274 PEDIEIWMMK 283 (299)
Q Consensus 274 ~~~~~iW~l~ 283 (299)
.+.+.||.+.
T Consensus 163 dg~i~~~d~~ 172 (372)
T 1k8k_C 163 DFKCRIFSAY 172 (372)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEEEcc
Confidence 8899999863
No 38
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=83.62 E-value=8.3 Score=36.63 Aligned_cols=112 Identities=9% Similarity=0.078 Sum_probs=58.5
Q ss_pred EEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCceEEC----CeeEEeecCCCccCccCCCCcc
Q 042133 154 YAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAY----GDMHWADDDHFSFGQRKGVDNC 228 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~----G~~yw~~~~~~~~~~~~~~~~~ 228 (299)
..+.+.+..+.-.++... +..+.+++..++.|..+.....+.. .-..+.+. |.....+..+.
T Consensus 57 ~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~l~sgs~dg----------- 123 (753)
T 3jro_A 57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSDG----------- 123 (753)
T ss_dssp EEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTS-----------
T ss_pred EEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC--CeEEEEECCCCCCCEEEEEeCCC-----------
Confidence 456665543222344333 7889999999887765543211110 01122222 44444433333
Q ss_pred EEEEEECCCCeee-eeCCCCCCCCCccccceeEEE--E-------------CCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMIN--L-------------KGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~--~-------------~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.|..+|+.+..-. ...+..+.. .-..+. . +|.+.+++...+.+.||.+..
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~------~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAI------GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSS------CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred cEEEEEeecCCCcceeEeecCCC------ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence 6888898876221 111111111 112222 1 577777777888999999874
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=82.64 E-value=18 Score=29.40 Aligned_cols=148 Identities=9% Similarity=0.002 Sum_probs=73.4
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhc-CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLE-LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~ 189 (299)
+.+|-++... . +..+.|||..+++... +..............+.+.+.. + .++... +..+.+|+..++......
T Consensus 60 ~~~~~~l~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 60 SNPTRHVYTG-G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-C-TLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp CSSSSEEEEE-C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-S-EEEEEESSSEEEEEECCCC--EEEE
T ss_pred ecCCcEEEEc-C-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-C-EEEEEcCCCcEEEEECCCCCcceee
Confidence 4455444442 3 6788899887765321 1111100111122556666533 2 233323 678999999887654332
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee-eCCCCCCCCCccccceeEEE--EC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN--LK 264 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~--~~ 264 (299)
...... ..-..+.+ +|.....+..+. .|..+|+.+.+... +..+.. .-..+. .+
T Consensus 136 ~~~~~~--~~i~~~~~~~~~~~l~~~~~dg-----------~v~~~d~~~~~~~~~~~~~~~--------~i~~~~~~~~ 194 (337)
T 1gxr_A 136 ELTSSA--PACYALAISPDSKVCFSCCSDG-----------NIAVWDLHNQTLVRQFQGHTD--------GASCIDISND 194 (337)
T ss_dssp EEECSS--SCEEEEEECTTSSEEEEEETTS-----------CEEEEETTTTEEEEEECCCSS--------CEEEEEECTT
T ss_pred ecccCC--CceEEEEECCCCCEEEEEeCCC-----------cEEEEeCCCCceeeeeecccC--------ceEEEEECCC
Confidence 210000 00012222 444444433332 58899998875433 222111 112333 57
Q ss_pred CeEEEEEeCCCeEEEEEecc
Q 042133 265 GCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 265 g~L~~~~~~~~~~~iW~l~~ 284 (299)
|+..+++...+.+.+|.++.
T Consensus 195 ~~~l~~~~~dg~i~~~d~~~ 214 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWDLRE 214 (337)
T ss_dssp SSEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEecCCcEEEEECCC
Confidence 77777777888899998764
No 40
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=82.32 E-value=18 Score=29.19 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=72.8
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSV 191 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~ 191 (299)
|.+|+|-.. . +..+.|||..|++...+-... ........+.+.+.. ++-+..-.+..+.+++..++.-...-..
T Consensus 34 S~~~~lAvg--~-D~tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 34 SSGNVLAVA--L-DNSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp CTTSEEEEE--E-TTEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEE--e-CCEEEEEECCCCCEEEEEEec--CCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecC
Confidence 667765444 2 678999999999865432222 111222455665543 2222222267888998887642111100
Q ss_pred CCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEE
Q 042133 192 PPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIV 270 (299)
Q Consensus 192 ~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~ 270 (299)
.. ........++.+-..+.... .+...+..+.......+..+.. ....... .+|++.+.
T Consensus 108 h~----~~~~~~~~~~~~l~s~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s 167 (318)
T 4ggc_A 108 HS----ARVGSLSWNSYILSSGSRSG-----------HIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLAS 167 (318)
T ss_dssp CS----SCEEEEEEETTEEEEEETTS-----------EEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEE
T ss_pred cc----ceEEEeecCCCEEEEEecCC-----------ceEeeecCCCceeEEEEcCccC-----ceEEEEEcCCCCEEEE
Confidence 00 00112223333322222222 4555565554333332222221 1122223 67787777
Q ss_pred EeCCCeEEEEEecc
Q 042133 271 ILTPEDIEIWMMKD 284 (299)
Q Consensus 271 ~~~~~~~~iW~l~~ 284 (299)
+...+.+.||.+..
T Consensus 168 ~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 168 GGNDNLVNVWPSAP 181 (318)
T ss_dssp EETTSCEEEEESSC
T ss_pred EecCcceeEEECCC
Confidence 77888999998764
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=81.08 E-value=14 Score=31.14 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=71.6
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCce-ecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWR-EIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~-~~~ 189 (299)
+-++.++.. ..+..+.|||..+++..................+.+.+.. + .++... +..+.+++..++.=. ...
T Consensus 91 s~d~~l~~~--s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~-~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 91 VGERGILVA--SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-T-QAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp ETTTEEEEE--ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-S-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred eCCCeEEEE--ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-C-EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 445655554 4477899999988875433322100111112455665543 2 233222 678889988775321 111
Q ss_pred CCCCccccCCCCceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCccccceeEEE---
Q 042133 190 SVPPEDLDNMSNGVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMIN--- 262 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~--- 262 (299)
..... -..+.+ +|. +...+..+ ..|..+|+.+.+.. .+..+.... ....+.
T Consensus 167 ~h~~~-----V~~~~~~~~~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~p 224 (344)
T 4gqb_B 167 AHAAQ-----VTCVAASPHKDSVFLSCSED-----------NRILLWDTRCPKPASQIGCSAPGY------LPTSLAWHP 224 (344)
T ss_dssp CCSSC-----EEEEEECSSCTTEEEEEETT-----------SCEEEEETTSSSCEEECC----CC------CEEEEEECS
T ss_pred CcCCc-----eEEEEecCCCCCceeeeccc-----------cccccccccccceeeeeecceeec------cceeeeecC
Confidence 00000 011222 232 22222222 25888999876543 333332221 112233
Q ss_pred ECCeEEEEEeCCCeEEEEEecc
Q 042133 263 LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.++++.+.+...+.+.||-++.
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC
T ss_pred CCCcceEEeccCCcEEEEECCC
Confidence 4567777667888999998763
No 42
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=77.66 E-value=16 Score=30.24 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=71.9
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCC---CceecCCCCCccccCCC
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTS---SWREISSVPPEDLDNMS 200 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~---~W~~~~~~~~~~~~~~~ 200 (299)
..+++++|.+++...+.... ....++.+++..+ .++... ...+.+|+..+. ..+.....+ . .
T Consensus 165 g~v~~~d~~~~~~~~~~~~~-----~~p~gia~~~dg~--~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~-g-----P 231 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKEL-----HVPGGAEVSADSS--FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP-N-----P 231 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SCCCEEEECTTSS--EEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-S-----E
T ss_pred ceEEEEeCCCCEEEEeccCC-----ccCcceEECCCCC--EEEEEeCCCCeEEEEECCCCcCCccceEEeCC-C-----C
Confidence 45777777776644321100 0113555555322 222222 467888887652 333322111 1 2
Q ss_pred CceEEC--CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeE
Q 042133 201 NGVSAY--GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDI 277 (299)
Q Consensus 201 ~~v~~~--G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~ 277 (299)
.++.++ |.+|....... ...........|..||.+.+....+..|..... .....+. .+|+|++.......+
T Consensus 232 ~gi~~d~~G~l~va~~~~~-~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~----~~~~~~~~~~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEEL-DGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG----EHFEQIQEHDGLLYIGTLFHGSV 306 (322)
T ss_dssp EEEEECTTSCEEEEEEEET-TSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT----SCCCEEEEETTEEEEECSSCSEE
T ss_pred CCeEECCCCCEEEEecCcc-cccccCCCccEEEEECCCCCEEEEEECCCCCcc----ccceEEEEeCCEEEEeecCCCce
Confidence 345554 76544433310 000000012369999998877778887754321 1123344 789999888788888
Q ss_pred EEEEecc
Q 042133 278 EIWMMKD 284 (299)
Q Consensus 278 ~iW~l~~ 284 (299)
.+..++.
T Consensus 307 ~~~~~~~ 313 (322)
T 2fp8_A 307 GILVYDK 313 (322)
T ss_dssp EEEEC--
T ss_pred EEEeccc
Confidence 8887764
No 43
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=77.55 E-value=52 Score=31.59 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=53.0
Q ss_pred EEEeEeCCCCCEEEEEEe---CceEEEEEcCCCCceecCCCCCccccCCCCceEEC---CeeEEeecCCCccCccCCCCc
Q 042133 154 YAMGFDGTTSTYKIVRVF---GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDN 227 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~---~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~ 227 (299)
.++.+|+..+ .|++.. ...+++++.....-+.+... ......++.+| |.|||......
T Consensus 517 ~gIaVDp~~g--~LYwtD~g~~~~I~~~~~dG~~~~~lv~~----~l~~P~GLavD~~~~~LYwaD~~~~---------- 580 (791)
T 3m0c_C 517 RAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLH---------- 580 (791)
T ss_dssp EEEEEETTTT--EEEEEECSSSCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETTTT----------
T ss_pred ceEEEecCCC--CEEEecCCCCCeEEEEecCCCceEEEEeC----CCCCceEEEEecCCCeEEEEeCCCC----------
Confidence 6777777654 233332 24566666644322222211 01112356654 89999976654
Q ss_pred cEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEeCCC
Q 042133 228 CVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVILTPE 275 (299)
Q Consensus 228 ~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~ 275 (299)
.|.++|++...-..+ .-.... .....|. .+++|+++.....
T Consensus 581 -~I~~~d~dG~~~~~v~~~~~~l------~~P~glav~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 581 -SISSIDVNGGNRKTILEDEKRL------AHPFSLAVFEDKVFWTDIINE 623 (791)
T ss_dssp -EEEEEETTSCSCEEEEECTTTT------SSEEEEEEETTEEEEEETTTT
T ss_pred -cEEEEecCCCceEEEecCCCcc------CCCCEEEEeCCEEEEEECCCC
Confidence 799999986644443 222111 1234556 7777777665433
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=77.28 E-value=29 Score=28.86 Aligned_cols=139 Identities=6% Similarity=0.078 Sum_probs=65.6
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCc
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNG 202 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~ 202 (299)
.+..+.|||..++++........ ........+.+.+.. .+ ++... +..+.+++..++.+..+.....+.. .-..
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g-~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~--~v~~ 110 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCG-NY-LASASFDATTCIWKKNQDDFECVTTLEGHEN--EVKS 110 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTS-SE-EEEEETTSCEEEEEECCC-EEEEEEECCCSS--CEEE
T ss_pred CCCeEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCC-CE-EEEEECCCcEEEEEccCCCeEEEEEccCCCC--CceE
Confidence 35667777776665321111100 011112556666543 22 33323 6788888887766543322111100 0012
Q ss_pred eEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCe-eeee-CCCCCCCCCccccceeEEE--ECCeEEEEEeCCCe
Q 042133 203 VSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE-FKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVILTPED 276 (299)
Q Consensus 203 v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~-~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~ 276 (299)
+.+ +|.....+..+. .|..+|+.++. ...+ .+..+.. .-..+. .+|++.+.+...+.
T Consensus 111 v~~sp~~~~l~s~s~D~-----------~v~iwd~~~~~~~~~~~~~~~h~~------~v~~~~~~p~~~~l~s~s~d~~ 173 (345)
T 3fm0_A 111 VAWAPSGNLLATCSRDK-----------SVWVWEVDEEDEYECVSVLNSHTQ------DVKHVVWHPSQELLASASYDDT 173 (345)
T ss_dssp EEECTTSSEEEEEETTS-----------CEEEEEECTTSCEEEEEEECCCCS------CEEEEEECSSSSCEEEEETTSC
T ss_pred EEEeCCCCEEEEEECCC-----------eEEEEECCCCCCeEEEEEecCcCC------CeEEEEECCCCCEEEEEeCCCc
Confidence 222 344433333332 58888887642 2222 1211111 112333 56777777778888
Q ss_pred EEEEEecc
Q 042133 277 IEIWMMKD 284 (299)
Q Consensus 277 ~~iW~l~~ 284 (299)
+.||.++.
T Consensus 174 i~~w~~~~ 181 (345)
T 3fm0_A 174 VKLYREEE 181 (345)
T ss_dssp EEEEEEET
T ss_pred EEEEEecC
Confidence 99998763
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=76.47 E-value=22 Score=29.42 Aligned_cols=140 Identities=9% Similarity=0.101 Sum_probs=63.2
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC------CceecCCCCC-ccc
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS------SWREISSVPP-EDL 196 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~------~W~~~~~~~~-~~~ 196 (299)
+..+.+||..++.+..+-... ........+.+++......++... +..+.+++..++ .|......+. +..
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred CCeEEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 567778877665432222111 111112455566654344444444 677788776442 2433222110 000
Q ss_pred cCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--E--CCeEEE
Q 042133 197 DNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--L--KGCLAI 269 (299)
Q Consensus 197 ~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~--~g~L~~ 269 (299)
.-..+.+ +|.+.-...++ .|..+|..+.+|..+ ........ ..-..+. . +|++.+
T Consensus 252 --~v~~v~~s~~~~l~s~~~dg------------~v~iw~~~~~~~~~~~~~~~~h~~----~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 252 --QVYNVAWGFNGLIASVGADG------------VLAVYEEVDGEWKVFAKRALCHGV----YEINVVKWLELNGKTILA 313 (330)
T ss_dssp --CEEEEEECTTSCEEEEETTS------------CEEEEEEETTEEEEEEEESCTTTT----SCEEEEEEC-----CCEE
T ss_pred --ceEEEEEcCCCEEEEEeCCC------------EEEEEEcCCCceEEEecccccccc----ceEEEEEEecCCCceEEE
Confidence 0001111 23333222232 488889888766544 22111110 0112233 2 577766
Q ss_pred EEeCCCeEEEEEecc
Q 042133 270 VILTPEDIEIWMMKD 284 (299)
Q Consensus 270 ~~~~~~~~~iW~l~~ 284 (299)
.+...+.+.||.+++
T Consensus 314 s~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 314 TGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTSEEEEEEC--
T ss_pred EecCCCcEEEEEecc
Confidence 666889999999874
No 46
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=75.99 E-value=35 Score=28.82 Aligned_cols=144 Identities=12% Similarity=-0.020 Sum_probs=75.6
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|.|++.. ....++..+++.++....+.... .....++.+|...+ +++... ...+++++.....-+.+.
T Consensus 82 ~~~~~ly~~D-~~~~~I~r~~~~g~~~~~~~~~~----~~~p~glavd~~~g--~ly~~d~~~~~I~~~~~dG~~~~~l~ 154 (349)
T 3v64_C 82 HRRELVFWSD-VTLDRILRANLNGSNVEEVVSTG----LESPGGLAVDWVHD--KLYWTDSGTSRIEVANLDGAHRKVLL 154 (349)
T ss_dssp TTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ccccEEEEEe-ccCCceEEEecCCCCceEEEeCC----CCCccEEEEecCCC--eEEEEcCCCCeEEEEcCCCCceEEEE
Confidence 3567777774 23567888888776644432211 01115777776554 333333 467788887654433322
Q ss_pred CCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECC
Q 042133 190 SVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g 265 (299)
.. ......++.+ +|.+||...... ..|.++|++......+- ...... .....+- .+|
T Consensus 155 ~~----~l~~P~~iavdp~~g~ly~td~~~~----------~~I~r~~~dG~~~~~~~-~~~~~~----PnGla~d~~~~ 215 (349)
T 3v64_C 155 WQ----SLEKPRAIALHPMEGTIYWTDWGNT----------PRIEASSMDGSGRRIIA-DTHLFW----PNGLTIDYAGR 215 (349)
T ss_dssp CT----TCSCEEEEEEETTTTEEEEEECSSS----------CEEEEEETTSCSCEESC-CSSCSC----EEEEEEETTTT
T ss_pred eC----CCCCcceEEEecCcCeEEEeccCCC----------CEEEEEeCCCCCcEEEE-ECCCCC----cceEEEeCCCC
Confidence 11 0111234454 489999976651 37999998865443331 111110 1112233 467
Q ss_pred eEEEEEeCCCeEEEEE
Q 042133 266 CLAIVILTPEDIEIWM 281 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~ 281 (299)
+|+++......+...-
T Consensus 216 ~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 216 RMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCEEEEEe
Confidence 7777766555444433
No 47
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=75.83 E-value=31 Score=28.44 Aligned_cols=152 Identities=7% Similarity=-0.062 Sum_probs=73.8
Q ss_pred eeecceEEeeEe-CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcC-CCCce
Q 042133 111 HSAYGLFCFHTR-GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLG-TSSWR 186 (299)
Q Consensus 111 ~s~~GLl~~~~~-~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~-~~~W~ 186 (299)
-+-+|-++.... .....+.+++..+++...+.... ........+.+++..+ + ++... +..+.+|+.. ++..+
T Consensus 47 ~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~p~~~a~spdg~-~-l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 47 LSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV--APGTPPAYVAVDEARQ-L-VYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp ECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE--EESCCCSEEEEETTTT-E-EEEEETTTTEEEEEEECTTSCEE
T ss_pred EccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee--cCCCCCEEEEECCCCC-E-EEEEeCCCCEEEEEEeCCCCCee
Confidence 344665433321 12467888988777654433211 0011114555666542 2 22222 4678888874 33433
Q ss_pred ecCCCCC---cc--c--cCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECC-CCeeeee---CCCCCCCCCc
Q 042133 187 EISSVPP---ED--L--DNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFK-KEEFKRT---PTPDFGSLSY 253 (299)
Q Consensus 187 ~~~~~~~---~~--~--~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~-~~~~~~i---~~P~~~~~~~ 253 (299)
.+..... .. . ......+.+ +|.+|....... .|..||+. +.+...+ ..+...
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~-----------~v~~~~~~~~g~~~~~~~~~~~~g~---- 187 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD-----------KVYVYNVSDAGQLSEQSVLTMEAGF---- 187 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT-----------EEEEEEECTTSCEEEEEEEECCTTC----
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC-----------EEEEEEECCCCcEEEeeeEEcCCCC----
Confidence 2221100 00 0 000112333 677555443333 68888988 5555433 333221
Q ss_pred cccceeEEE--ECCeEEEE-EeCCCeEEEEEecc
Q 042133 254 EHERFVMIN--LKGCLAIV-ILTPEDIEIWMMKD 284 (299)
Q Consensus 254 ~~~~~~~l~--~~g~L~~~-~~~~~~~~iW~l~~ 284 (299)
....+. -+|+..++ ....+.+.+|.++.
T Consensus 188 ---~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 188 ---GPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp ---CEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ---CCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 112344 67874444 44788999999874
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=75.51 E-value=30 Score=29.11 Aligned_cols=147 Identities=13% Similarity=-0.017 Sum_probs=66.0
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCcee-cC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWRE-IS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~-~~ 189 (299)
+.+|.++.. .....+.|||..+++..................+.+.+.. .+ ++... +..+.+++..++.-.. ..
T Consensus 103 s~d~~~l~~--s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~-l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 103 VSEKGILVA--SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQ-AVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp ETTTEEEEE--ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SE-EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cCCCCEEEE--ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CE-EEEEeCCCeEEEEECCCCcEEEEEc
Confidence 445555554 3467899999999876544432211111122555665543 22 33333 6788899887754321 11
Q ss_pred CCCCccccCCCCceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE---
Q 042133 190 SVPPEDLDNMSNGVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--- 262 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--- 262 (299)
..... -..+.+ +|. +...+..+ ..|..+|+.+.+.... ...... .....+.
T Consensus 179 ~h~~~-----v~~v~~s~~~~~~~~s~~~d-----------g~v~~wd~~~~~~~~~~~~~~~~------~~v~~v~~sp 236 (357)
T 4g56_B 179 AHSSE-----VNCVAACPGKDTIFLSCGED-----------GRILLWDTRKPKPATRIDFCASD------TIPTSVTWHP 236 (357)
T ss_dssp CCSSC-----EEEEEECTTCSSCEEEEETT-----------SCEEECCTTSSSCBCBCCCTTCC------SCEEEEEECT
T ss_pred CCCCC-----EEEEEEccCCCceeeeeccC-----------CceEEEECCCCceeeeeeecccc------ccccchhhhh
Confidence 10000 012222 232 22222222 2488889887654322 222221 1122333
Q ss_pred ECCeEEEEEeCCCeEEEEEecc
Q 042133 263 LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.++.+.+++.....+.||-+..
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSC
T ss_pred cccceEEEeecccceeEEECCC
Confidence 3466666666788899998764
No 49
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=74.57 E-value=30 Score=29.92 Aligned_cols=145 Identities=7% Similarity=0.047 Sum_probs=68.8
Q ss_pred eEEeeEeCCcccEEEEcccchhh--hcCC-CCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC-ceecCC
Q 042133 116 LFCFHTRGGVGKAYLCNPLRKEV--LELP-QATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS-WREISS 190 (299)
Q Consensus 116 Ll~~~~~~~~~~~~V~NP~T~~~--~~lP-~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~-W~~~~~ 190 (299)
+++.. ..+..+.||+..++.. ..+. .............+.+.+..+. .++... +..+.+|+.+++. .+.+..
T Consensus 196 ~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 196 YLLSA--SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp EEEEE--CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred eEEEE--eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 44444 4567888888877321 1111 1110011111255666664433 333333 7889999998753 111111
Q ss_pred CCCccccCCCCceEEC--Ce-eEEeecCCCccCccCCCCccEEEEEECCCCe--eeeeCCCCCCCCCccccceeEEE--E
Q 042133 191 VPPEDLDNMSNGVSAY--GD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEE--FKRTPTPDFGSLSYEHERFVMIN--L 263 (299)
Q Consensus 191 ~~~~~~~~~~~~v~~~--G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~~~l~--~ 263 (299)
...+ ...-..+.++ |. ++..+..+. .|..+|+.+.. ...+.. +. ..-..+. .
T Consensus 273 ~~~~--~~~v~~i~~~p~~~~~l~tg~~dg-----------~v~vwd~~~~~~~~~~~~~--h~------~~v~~i~~sp 331 (430)
T 2xyi_A 273 VDAH--TAEVNCLSFNPYSEFILATGSADK-----------TVALWDLRNLKLKLHSFES--HK------DEIFQVQWSP 331 (430)
T ss_dssp EECC--SSCEEEEEECSSCTTEEEEEETTS-----------EEEEEETTCTTSCSEEEEC--CS------SCEEEEEECS
T ss_pred eecC--CCCeEEEEeCCCCCCEEEEEeCCC-----------eEEEEeCCCCCCCeEEeec--CC------CCEEEEEECC
Confidence 0000 0001123332 33 344443333 69999998632 222221 11 1112333 4
Q ss_pred CC-eEEEEEeCCCeEEEEEecc
Q 042133 264 KG-CLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 264 ~g-~L~~~~~~~~~~~iW~l~~ 284 (299)
+| .+++++...+.+.||.+..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEEeCCC
Confidence 45 4666666788999999875
No 50
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.91 E-value=44 Score=28.95 Aligned_cols=153 Identities=14% Similarity=-0.016 Sum_probs=78.0
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcce-E-EEeEeCCCCCEEEEEEe--CceEEEEEcCCCCcee
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDF-Y-AMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWRE 187 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~-~-~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~ 187 (299)
..+|.|++. +...+++++|+.++....+-........... . ++.+++..+. ++... ...+.+|+.... -..
T Consensus 228 p~~g~lyv~--d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~--lyv~d~~~~~I~~~~~~g~-~~~ 302 (409)
T 3hrp_A 228 ETEEWLYFV--DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN--FYMSDQNLSSVYKITPDGE-CEW 302 (409)
T ss_dssp TTSSEEEEE--CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE--EEEEETTTTEEEEECTTCC-EEE
T ss_pred CCCCeEEEE--ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE--EEEEeCCCCEEEEEecCCC-EEE
Confidence 337777775 5567899999988775544111000011111 3 7778775432 22222 345555554332 111
Q ss_pred cCCCC--Cc--------cccCCCCceEE--CCeeEEeec-CCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCc
Q 042133 188 ISSVP--PE--------DLDNMSNGVSA--YGDMHWADD-DHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSY 253 (299)
Q Consensus 188 ~~~~~--~~--------~~~~~~~~v~~--~G~~yw~~~-~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~ 253 (299)
+.... .. .......++.+ +|.+|+... ... .|..||+.+.+...+. -+.... +
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~-----------~I~~~~~~~G~v~~~~g~~~~~g--~ 369 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY-----------CLRKLDILDGYVSTVAGQVDVAS--Q 369 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC-----------EEEEEETTTTEEEEEEECTTCBS--C
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC-----------EEEEEECCCCEEEEEeCCCCCCC--c
Confidence 11100 00 00112235555 488887765 444 7999997777766552 211100 0
Q ss_pred cc--------cceeEEE--ECCeEEEEEeCCCeEEEEEe
Q 042133 254 EH--------ERFVMIN--LKGCLAIVILTPEDIEIWMM 282 (299)
Q Consensus 254 ~~--------~~~~~l~--~~g~L~~~~~~~~~~~iW~l 282 (299)
.+ .....|. .+|.|+++.....++....+
T Consensus 370 ~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 370 IDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 00 1234455 56999888877777766554
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=73.88 E-value=39 Score=28.36 Aligned_cols=136 Identities=7% Similarity=-0.054 Sum_probs=67.3
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCc-eecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSW-REISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W-~~~~~~~~~~~~~~~~~v 203 (299)
+..+.|||..+++....-... ........+.+.+..+.+-+..-.+..+.+|+..++.= +....... .-..+
T Consensus 203 dg~v~~wd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~l 275 (357)
T 4g56_B 203 DGRILLWDTRKPKPATRIDFC--ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-----NITGL 275 (357)
T ss_dssp TSCEEECCTTSSSCBCBCCCT--TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-----CEEEE
T ss_pred CCceEEEECCCCceeeeeeec--cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-----eEEEE
Confidence 556788887776543222211 11112255666665444322222267888998876431 11111100 00122
Q ss_pred EE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE---ECCeEEEEEeCCCeEE
Q 042133 204 SA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN---LKGCLAIVILTPEDIE 278 (299)
Q Consensus 204 ~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~---~~g~L~~~~~~~~~~~ 278 (299)
.+ +|.-+..+...+ ..|..+|+.+.+..... .+. ..-..|. .+|++.+.+...+.+.
T Consensus 276 ~~sp~~~~~lasgs~D----------~~i~iwd~~~~~~~~~~--~H~------~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 276 AYSYHSSPFLASISED----------CTVAVLDADFSEVFRDL--SHR------DFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp EECSSSSCCEEEEETT----------SCEEEECTTSCEEEEEC--CCS------SCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEcCCCCCEEEEEeCC----------CEEEEEECCCCcEeEEC--CCC------CCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 22 343232222221 25888999887654332 111 1112344 3788877777889999
Q ss_pred EEEeccC
Q 042133 279 IWMMKDY 285 (299)
Q Consensus 279 iW~l~~~ 285 (299)
||.+...
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9999753
No 52
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=73.33 E-value=33 Score=27.35 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=74.0
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCC-CcceEEEeEeCCCCCEEEEEEe---CceEEEEEcCCCCcee
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGS-WLDFYAMGFDGTTSTYKIVRVF---GKRSEIYTLGTSSWRE 187 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~-~~~~~~l~~d~~~~~ykvv~~~---~~~~~vyss~~~~W~~ 187 (299)
+.+|-+++.. .....+.++|+..+....++....... .....++.++...+ ++++.. ...+.+|+.....-+.
T Consensus 38 ~~~g~l~v~~-~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~~d~~g~~~~~ 114 (286)
T 1q7f_A 38 NAQNDIIVAD-TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIYNQYGQFVRK 114 (286)
T ss_dssp CTTCCEEEEE-GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEECTTSCEEEE
T ss_pred CCCCCEEEEE-CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEEEECCCCcEEEE
Confidence 4456665553 235678888887555444543221111 11225666643333 233332 4677778743322222
Q ss_pred cCCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--E
Q 042133 188 ISSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--L 263 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~ 263 (299)
+.... .....++.+ +|.+|....... .|..||...+....+..+.... ....|. .
T Consensus 115 ~~~~~----~~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~~~~g~~~~~~~~~~~~~------~p~~i~~~~ 173 (286)
T 1q7f_A 115 FGATI----LQHPRGVTVDNKGRIIVVECKVM-----------RVIIFDQNGNVLHKFGCSKHLE------FPNGVVVND 173 (286)
T ss_dssp ECTTT----CSCEEEEEECTTSCEEEEETTTT-----------EEEEECTTSCEEEEEECTTTCS------SEEEEEECS
T ss_pred ecCcc----CCCceEEEEeCCCCEEEEECCCC-----------EEEEEcCCCCEEEEeCCCCccC------CcEEEEECC
Confidence 22110 001123444 577776654433 6999998776666554332211 123344 5
Q ss_pred CCeEEEEEeCCCeEEEEEe
Q 042133 264 KGCLAIVILTPEDIEIWMM 282 (299)
Q Consensus 264 ~g~L~~~~~~~~~~~iW~l 282 (299)
+|+|+++......+.+|..
T Consensus 174 ~g~l~v~~~~~~~i~~~~~ 192 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNY 192 (286)
T ss_dssp SSEEEEEEGGGTEEEEEET
T ss_pred CCCEEEEECCCCEEEEEcC
Confidence 6787666656666666653
No 53
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=72.78 E-value=37 Score=27.59 Aligned_cols=126 Identities=11% Similarity=0.126 Sum_probs=61.7
Q ss_pred EEEeEeCCCCCEEEEEEe-CceEEEEEcC--CCCceecCC---CCCccc-cCCCCceEE--CCe-eEEeecCCCccCccC
Q 042133 154 YAMGFDGTTSTYKIVRVF-GKRSEIYTLG--TSSWREISS---VPPEDL-DNMSNGVSA--YGD-MHWADDDHFSFGQRK 223 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~-~~~~~vyss~--~~~W~~~~~---~~~~~~-~~~~~~v~~--~G~-~yw~~~~~~~~~~~~ 223 (299)
..+.+++.. .+-++.-. +..+.+|+.. ++.+..... .+.... ......+.+ +|. +|.......
T Consensus 181 ~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~------ 253 (343)
T 1ri6_A 181 RHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS------ 253 (343)
T ss_dssp EEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT------
T ss_pred ceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC------
Confidence 456666653 23222222 5788899884 455533221 111100 000112444 354 544443332
Q ss_pred CCCccEEEEEECC--CCeeeee-CCCCCCCCCccccceeEEEECCeEEEEEe-CCCeEEEEEeccCCCCceeEEEEEe
Q 042133 224 GVDNCVIISFDFK--KEEFKRT-PTPDFGSLSYEHERFVMINLKGCLAIVIL-TPEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 224 ~~~~~~il~fD~~--~~~~~~i-~~P~~~~~~~~~~~~~~l~~~g~L~~~~~-~~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
.|..||+. +.+...+ .++..... ....+..+|+..++.. ..+.+.||.++. ..+++.++..++
T Consensus 254 -----~i~v~d~~~~~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~~~v~v~~~d~-~~g~~~~~~~~~ 320 (343)
T 1ri6_A 254 -----LITVFSVSEDGSVLSKEGFQPTETQP-----RGFNVDHSGKYLIAAGQKSHHISVYEIVG-EQGLLHEKGRYA 320 (343)
T ss_dssp -----EEEEEEECTTSCCEEEEEEEECSSSC-----CCEEECTTSSEEEEECTTTCEEEEEEEET-TTTEEEEEEEEE
T ss_pred -----EEEEEEEcCCCCceEEeeeecCCCcc-----ceEEECCCCCEEEEecCCCCeEEEEEEcC-CCceeeEccccc
Confidence 68888887 4445444 22222111 1122225677666666 788999998873 223566665543
No 54
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=71.04 E-value=40 Score=27.33 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=58.5
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCCCC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPP 193 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~~~ 193 (299)
+|-+++.. ....+++.+||.+++...+.... ...++.+++..+ +++.....+.+|+..++..+.+.....
T Consensus 24 ~~~l~~~d-~~~~~i~~~d~~~~~~~~~~~~~------~~~~i~~~~dG~---l~v~~~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVD-IPAKKVCRWDSFTKQVQRVTMDA------PVSSVALRQSGG---YVATIGTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEE-TTTTEEEEEETTTCCEEEEECSS------CEEEEEEBTTSS---EEEEETTEEEEEETTTTEEEEEEECCT
T ss_pred CCEEEEEE-CCCCEEEEEECCCCcEEEEeCCC------ceEEEEECCCCC---EEEEECCeEEEEECCCCcEEEEEecCC
Confidence 45555553 34678899999988764432211 124566666543 333236788899998888776543311
Q ss_pred ccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCC
Q 042133 194 EDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKK 237 (299)
Q Consensus 194 ~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~ 237 (299)
.........+.+ +|.+|+..................|..+|.+.
T Consensus 94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 110011123333 57866644322100000011234688888764
No 55
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=70.71 E-value=36 Score=26.69 Aligned_cols=143 Identities=8% Similarity=0.013 Sum_probs=76.0
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|-+++.. .....++++++-+.......... .....++.+|+.. +++... ...+.+|+..++.-....
T Consensus 116 ~~~g~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~~~~~~~~~ 187 (270)
T 1rwi_B 116 DTQGAVYVAD-RGNNRVVKLAAGSKTQTVLPFTG----LNDPDGVAVDNSG---NVYVTDTDNNRVVKLEAESNNQVVLP 187 (270)
T ss_dssp CTTCCEEEEE-GGGTEEEEECTTCCSCEECCCCS----CCSCCCEEECTTC---CEEEEEGGGTEEEEECTTTCCEEECC
T ss_pred CCCCCEEEEE-CCCCEEEEEECCCceeEeecccc----CCCceeEEEeCCC---CEEEEECCCCEEEEEecCCCceEeec
Confidence 3356655552 22456777776555443322211 1111456666633 233333 357888887765432221
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
... .....++.+ +|.+|+...... .|..||..+.....+... .. .....+. .+|
T Consensus 188 ~~~----~~~p~~i~~d~~g~l~v~~~~~~-----------~v~~~~~~~~~~~~~~~~--~~-----~~p~~i~~~~~g 245 (270)
T 1rwi_B 188 FTD----ITAPWGIAVDEAGTVYVTEHNTN-----------QVVKLLAGSTTSTVLPFT--GL-----NTPLAVAVDSDR 245 (270)
T ss_dssp CSS----CCSEEEEEECTTCCEEEEETTTS-----------CEEEECTTCSCCEECCCC--SC-----SCEEEEEECTTC
T ss_pred ccC----CCCceEEEECCCCCEEEEECCCC-----------cEEEEcCCCCcceeeccC--CC-----CCceeEEECCCC
Confidence 111 011235555 466776665443 599999987654433221 11 1223344 678
Q ss_pred eEEEEEeCCCeEEEEEecc
Q 042133 266 CLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l~~ 284 (299)
+|+++....+.+.++.+++
T Consensus 246 ~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGGGTEEEEECCCG
T ss_pred CEEEEECCCCEEEEEcCCC
Confidence 9888877888999888875
No 56
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=70.27 E-value=35 Score=27.92 Aligned_cols=72 Identities=7% Similarity=0.105 Sum_probs=34.9
Q ss_pred ecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCC-CCCEEEEEEe-CceEEEEEcCCCCceec
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGT-TSTYKIVRVF-GKRSEIYTLGTSSWREI 188 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~-~~~ykvv~~~-~~~~~vyss~~~~W~~~ 188 (299)
.+|-.++.. ..+..+.|||..+++...+-... ........+.+.+. .+. .++... +..+.+++..++.|...
T Consensus 23 ~~g~~lasg-s~D~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 23 YYGTRLATC-SSDRSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp GGGCEEEEE-ETTTEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEE
T ss_pred CCCCEEEEE-eCCCeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEE
Confidence 344433332 33567778877665432211111 11111144455432 122 233333 78899999988877543
No 57
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=70.03 E-value=38 Score=26.59 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=75.4
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|-+++. .....++++|+.++....++... .....++.+|+.. +++... ...+.+|+.++.......
T Consensus 75 ~~~g~l~v~--~~~~~i~~~d~~~~~~~~~~~~~----~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 75 DGAGTVYVT--DFNNRVVTLAAGSNNQTVLPFDG----LNYPEGLAVDTQG---AVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CTTCCEEEE--ETTTEEEEECTTCSCCEECCCCS----CSSEEEEEECTTC---CEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCCCCEEEE--cCCCEEEEEeCCCceEeeeecCC----cCCCcceEECCCC---CEEEEECCCCEEEEEECCCceeEeec
Confidence 446666666 33668899999887665554322 1122567777643 233333 456777766554443221
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
.. . .....++.+ +|.+|+...... .|..||..+........... . ....|. .+|
T Consensus 146 ~~--~--~~~p~~i~~~~~g~l~v~~~~~~-----------~i~~~~~~~~~~~~~~~~~~-~------~p~~i~~d~~g 203 (270)
T 1rwi_B 146 FT--G--LNDPDGVAVDNSGNVYVTDTDNN-----------RVVKLEAESNNQVVLPFTDI-T------APWGIAVDEAG 203 (270)
T ss_dssp CC--S--CCSCCCEEECTTCCEEEEEGGGT-----------EEEEECTTTCCEEECCCSSC-C------SEEEEEECTTC
T ss_pred cc--c--CCCceeEEEeCCCCEEEEECCCC-----------EEEEEecCCCceEeecccCC-C------CceEEEECCCC
Confidence 11 0 111235555 478777665443 69999998776544322111 1 112333 556
Q ss_pred eEEEEEeCCCeEEEEEe
Q 042133 266 CLAIVILTPEDIEIWMM 282 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l 282 (299)
.|+++....+.+.+|..
T Consensus 204 ~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp CEEEEETTTSCEEEECT
T ss_pred CEEEEECCCCcEEEEcC
Confidence 77776665555555543
No 58
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=69.80 E-value=53 Score=28.15 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=58.2
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSV 191 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~ 191 (299)
.+.+++. . ...+...++.+++...+-.. .....++.+|+..+ +|+... ...+..++...+..+.+...
T Consensus 87 ~~~l~~~--~-~~~I~~i~~~~~~~~~~~~~-----~~~~~gl~~d~~~~--~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 87 EPVLLFA--N-RIDIRQVLPHRSEYTLLLNN-----LENAIALDFHHRRE--LVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CCEEEEE--C-BSCEEEECTTSCCCEEEECS-----CSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred cceeEee--c-CccceeeccCCCcEEEEecC-----CCccEEEEEecCCC--eEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4555555 3 45666777665544332211 11237888887654 344444 46777777776654443221
Q ss_pred CCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeee
Q 042133 192 PPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK 241 (299)
Q Consensus 192 ~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~ 241 (299)
. .....++.+ +|.+||...... .|.++|++.....
T Consensus 157 ~----~~~p~glavd~~~g~lY~~d~~~~-----------~I~~~~~dg~~~~ 194 (386)
T 3v65_B 157 G----LESPGGLAVDWVHDKLYWTDSGTS-----------RIEVANLDGAHRK 194 (386)
T ss_dssp S----CSCCCCEEEETTTTEEEEEETTTT-----------EEEECBTTSCSCE
T ss_pred C----CCCccEEEEEeCCCeEEEEcCCCC-----------eEEEEeCCCCceE
Confidence 0 111235555 489999987665 7999998765433
No 59
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=69.22 E-value=41 Score=26.69 Aligned_cols=140 Identities=9% Similarity=-0.071 Sum_probs=74.0
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|-+.+.. .....++++|| +++...+.... ......++.+|+.. ++.... ...+.+|+. ++......
T Consensus 107 ~~~g~l~v~~-~~~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~ 177 (299)
T 2z2n_A 107 GPNGDIWFTE-MNGNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDN---ALWFTENQNNAIGRITE-SGDITEFK 177 (299)
T ss_dssp CTTSCEEEEE-TTTTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTS---CEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CCCCCEEEEe-cCCceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCC---CEEEEeCCCCEEEEEcC-CCcEEEee
Confidence 4467666653 33567889999 76655433221 11122566666543 233332 356777877 66665432
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
... . .....++.+ +|.+|+...... .|..||. +.++..+.+|.... ....|. .+|
T Consensus 178 ~~~-~--~~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~~~-~g~~~~~~~~~~~~------~~~~i~~~~~g 236 (299)
T 2z2n_A 178 IPT-P--ASGPVGITKGNDDALWFVEIIGN-----------KIGRITT-SGEITEFKIPTPNA------RPHAITAGAGI 236 (299)
T ss_dssp CSS-T--TCCEEEEEECTTSSEEEEETTTT-----------EEEEECT-TCCEEEEECSSTTC------CEEEEEECSTT
T ss_pred CCC-C--CCcceeEEECCCCCEEEEccCCc-----------eEEEECC-CCcEEEEECCCCCC------CceeEEECCCC
Confidence 110 0 011124444 477766554433 6999999 77777665653221 122333 567
Q ss_pred eEEEEEeCCCeEEEEE
Q 042133 266 CLAIVILTPEDIEIWM 281 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~ 281 (299)
+|.+.....+.+.+|.
T Consensus 237 ~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLT 252 (299)
T ss_dssp CEEEEETTTTEEEEEE
T ss_pred CEEEeccCCceEEEEC
Confidence 7666654444554443
No 60
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=69.19 E-value=83 Score=30.18 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=55.8
Q ss_pred EEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCcc
Q 042133 154 YAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNC 228 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~ 228 (299)
.++.+|...+ +|++.. ...+++++.....-+.+... ......++.+ +|.|||...... .
T Consensus 474 ~GLAvD~~~~--~LY~tD~~~~~I~v~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~~----------~ 537 (791)
T 3m0c_C 474 DGLAVDWIHS--NIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTP----------A 537 (791)
T ss_dssp CEEEEETTTT--EEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSSS----------C
T ss_pred ceeeeeecCC--cEEEEecCCCeEEEEeCCCCeEEEEEeC----CCCCcceEEEecCCCCEEEecCCCC----------C
Confidence 6777886654 344444 46788888775544443221 0111236666 489999975542 2
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCe
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPED 276 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~ 276 (299)
.|.++|++......+-- ..... ...+.|- .+|+|+++......
T Consensus 538 ~I~~~~~dG~~~~~lv~-~~l~~----P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVT-ENIQW----PNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp EEEEEETTSCCEEEEEC-SSCSC----EEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEecCCCceEEEEe-CCCCC----ceEEEEecCCCeEEEEeCCCCc
Confidence 69999998665444321 11110 1112333 56788877654443
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=67.82 E-value=49 Score=27.05 Aligned_cols=138 Identities=9% Similarity=0.071 Sum_probs=67.3
Q ss_pred cccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCCCCC-EEEEEEe--CceEEEEEcCCCCce-ecCCCCCccccCC
Q 042133 125 VGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGTTST-YKIVRVF--GKRSEIYTLGTSSWR-EISSVPPEDLDNM 199 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~~~~-ykvv~~~--~~~~~vyss~~~~W~-~~~~~~~~~~~~~ 199 (299)
...+.|||..+++.. .+..............+.+.+.... -++++.. +..+.+|+..++.=. ....... .
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----~ 117 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-----A 117 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-----C
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-----c
Confidence 346777777766543 2221110001111244555444221 2333333 678999988765321 1110000 0
Q ss_pred CCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC--CCCCCCCCccccceeEEE--ECCeEEEEEe
Q 042133 200 SNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP--TPDFGSLSYEHERFVMIN--LKGCLAIVIL 272 (299)
Q Consensus 200 ~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~--~P~~~~~~~~~~~~~~l~--~~g~L~~~~~ 272 (299)
-..+.+ +|.+...+..+. .|..+|+.+.+....- +..+. ..-..+. .+|++.+++.
T Consensus 118 i~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 118 INELKFHPRDPNLLLSVSKDH-----------ALRLWNIQTDTLVAIFGGVEGHR------DEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp EEEEEECSSCTTEEEEEETTS-----------CEEEEETTTTEEEEEECSTTSCS------SCEEEEEECTTSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEeCCC-----------eEEEEEeecCeEEEEeccccccc------CceeEEEECCCCCEEEEec
Confidence 112223 344433333332 5899999887653332 12221 1123344 5687777777
Q ss_pred CCCeEEEEEecc
Q 042133 273 TPEDIEIWMMKD 284 (299)
Q Consensus 273 ~~~~~~iW~l~~ 284 (299)
..+.+.||.++.
T Consensus 181 ~dg~i~i~d~~~ 192 (366)
T 3k26_A 181 MDHSLKLWRINS 192 (366)
T ss_dssp TTSCEEEEESCS
T ss_pred CCCCEEEEECCC
Confidence 888999999863
No 62
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=65.59 E-value=49 Score=26.28 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=78.2
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|-+++.. .....+.++++..+....+.... ......++.+|+.. ++++.. ...+.+|+.....-..+.
T Consensus 129 ~~~g~l~v~~-~~~~~i~~~~~~g~~~~~~~~~~---~~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~g~~~~~~~ 201 (286)
T 1q7f_A 129 DNKGRIIVVE-CKVMRVIIFDQNGNVLHKFGCSK---HLEFPNGVVVNDKQ---EIFISDNRAHCVKVFNYEGQYLRQIG 201 (286)
T ss_dssp CTTSCEEEEE-TTTTEEEEECTTSCEEEEEECTT---TCSSEEEEEECSSS---EEEEEEGGGTEEEEEETTCCEEEEES
T ss_pred eCCCCEEEEE-CCCCEEEEEcCCCCEEEEeCCCC---ccCCcEEEEECCCC---CEEEEECCCCEEEEEcCCCCEEEEEc
Confidence 3456555552 33567888887554433332211 11122567777643 244443 568888987554333332
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
... ......++.+ +|.+|....... ..|..||.+.+....+..+.... ....+. .+|
T Consensus 202 ~~g---~~~~p~~i~~d~~G~l~v~~~~~~----------~~i~~~~~~g~~~~~~~~~~~~~------~~~~i~~~~~g 262 (286)
T 1q7f_A 202 GEG---ITNYPIGVGINSNGEILIADNHNN----------FNLTIFTQDGQLISALESKVKHA------QCFDVALMDDG 262 (286)
T ss_dssp CTT---TSCSEEEEEECTTCCEEEEECSSS----------CEEEEECTTSCEEEEEEESSCCS------CEEEEEEETTT
T ss_pred cCC---ccCCCcEEEECCCCCEEEEeCCCC----------EEEEEECCCCCEEEEEcccCCCC------cceeEEECCCC
Confidence 210 0011234555 577666554331 15999998776666664432211 122344 689
Q ss_pred eEEEEEeCCCeEEEEEecc
Q 042133 266 CLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l~~ 284 (299)
+|+++ ...+.+.||.+.+
T Consensus 263 ~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 263 SVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEE-ETTTEEEEEECSC
T ss_pred cEEEE-CCCCeEEEEEccc
Confidence 98877 4578999998764
No 63
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=65.58 E-value=52 Score=27.49 Aligned_cols=129 Identities=9% Similarity=-0.009 Sum_probs=67.4
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMS 200 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~ 200 (299)
..+..+.++|..+++....-... .....+.+++... .+++.. +..+.+++..++.-...-.... ..
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~--~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~v 76 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVG-----SNPMGAVISPDGT--KVYVANAHSNDVSIIDTATNNVIATVPAGS-----SP 76 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSS--EEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SE
T ss_pred CCCCEEEEEECCCCeEEEEeecC-----CCcceEEECCCCC--EEEEECCCCCeEEEEECCCCeEEEEEECCC-----Cc
Confidence 34678889998887654321111 1124555655432 232332 6788999988765432111111 01
Q ss_pred CceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--ECCeEE-EEEeC
Q 042133 201 NGVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LKGCLA-IVILT 273 (299)
Q Consensus 201 ~~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~-~~~~~ 273 (299)
..+.+ +|. +|....... .|..+|+.+.+.... ..+. ....+. .+|+.. ++...
T Consensus 77 ~~~~~spdg~~l~~~~~~~~-----------~v~v~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASS-----------TLSVIDTTSNTVAGTVKTGK---------SPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EEEEECTTSSEEEEEETTTT-----------EEEEEETTTTEEEEEEECSS---------SEEEEEECTTSSEEEEEETT
T ss_pred cceEECCCCCEEEEEECCCC-----------EEEEEECCCCeEEEEEeCCC---------CcceEEECCCCCEEEEEeCC
Confidence 12333 355 444443333 699999998765333 3211 112333 566654 44447
Q ss_pred CCeEEEEEec
Q 042133 274 PEDIEIWMMK 283 (299)
Q Consensus 274 ~~~~~iW~l~ 283 (299)
.+.+.+|.++
T Consensus 137 ~~~v~~~d~~ 146 (391)
T 1l0q_A 137 DKTVSVINTV 146 (391)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEEECC
Confidence 7888888765
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=64.77 E-value=60 Score=26.99 Aligned_cols=112 Identities=7% Similarity=0.051 Sum_probs=53.0
Q ss_pred EEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEE
Q 042133 154 YAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISF 233 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~f 233 (299)
..+.+.+..+.+-+..-.+..+.+|+..++.-...-...............-+|.+...+..+. .|..+
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~ 171 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP-----------KVQLC 171 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS-----------SEEEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC-----------eEEEE
Confidence 5666666443332222226788899888754322111111000000000001222333333322 58889
Q ss_pred ECCCCeeee-eCCCCCCCCCccccceeEEE--ECCe-EEEEEeCCCeEEEEEecc
Q 042133 234 DFKKEEFKR-TPTPDFGSLSYEHERFVMIN--LKGC-LAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 234 D~~~~~~~~-i~~P~~~~~~~~~~~~~~l~--~~g~-L~~~~~~~~~~~iW~l~~ 284 (299)
|+.+.+... +.... ..-..+. .+|+ +.+++...+.+.||.+..
T Consensus 172 d~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 172 DLKSGSCSHILQGHR--------QEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp ESSSSCCCEEECCCC--------SCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred eCCCcceeeeecCCC--------CcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 998765422 22111 1112333 4555 666666888999999854
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=64.06 E-value=56 Score=26.34 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=15.0
Q ss_pred CeEEEEEeCCCeEEEEEecc
Q 042133 265 GCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 265 g~L~~~~~~~~~~~iW~l~~ 284 (299)
|++.+.+...+.+.||.++.
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp CCEEEEEETTSCEEEEEEET
T ss_pred cceEEEEcCCCcEEEEEEcC
Confidence 45666666888999998864
No 66
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=62.34 E-value=70 Score=26.89 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=57.6
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSV 191 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~ 191 (299)
.+.+++. . ...+...++.+.....+-.. .....++.+|+..+ +++... ...+..++...+.-+.+...
T Consensus 44 ~~~ll~~--~-~~~I~~i~~~g~~~~~~~~~-----~~~~~~l~~d~~~~--~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 44 EPVLLFA--N-RIDIRQVLPHRSEYTLLLNN-----LENAIALDFHHRRE--LVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CCEEEEE--C-BSCEEEECTTSCCEEEEECS-----CSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CceeEee--c-ccceEEEeCCCCeeEEeecC-----CCceEEEEEecccc--EEEEEeccCCceEEEecCCCCceEEEeC
Confidence 4555555 3 44566666655444322111 11237888887654 344443 46677777766554433211
Q ss_pred CCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee
Q 042133 192 PPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 192 ~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~ 242 (299)
. .....++.+ +|.+||...... .|.++|++......
T Consensus 114 ~----~~~p~glavd~~~g~ly~~d~~~~-----------~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 114 G----LESPGGLAVDWVHDKLYWTDSGTS-----------RIEVANLDGAHRKV 152 (349)
T ss_dssp S----CSCCCEEEEETTTTEEEEEETTTT-----------EEEEEETTSCSCEE
T ss_pred C----CCCccEEEEecCCCeEEEEcCCCC-----------eEEEEcCCCCceEE
Confidence 0 111235555 589999987665 79999998764433
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=62.32 E-value=71 Score=26.95 Aligned_cols=150 Identities=10% Similarity=0.047 Sum_probs=75.3
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCC---CCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELP---QATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP---~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~ 189 (299)
+|-+++.. ..+..+.|||..++....-. .............+.+.+.... .++... +..+.+++..++.....-
T Consensus 93 ~~~~l~s~-s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 93 NDNVIASG-SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp CTTEEEEE-ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEE-eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEE
Confidence 44443332 34678999998887542211 0000001111155666655423 233333 678999998886543211
Q ss_pred --CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccccceeEEE-E
Q 042133 190 --SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHERFVMIN-L 263 (299)
Q Consensus 190 --~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~l~-~ 263 (299)
..... .-..+.+ +|.....+..+. .|..+|+.+.+....- ...... ....... .
T Consensus 171 ~~~~~~~----~v~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 230 (402)
T 2aq5_A 171 GPDVHPD----TIYSVDWSRDGALICTSCRDK-----------RVRVIEPRKGTVVAEKDRPHEGT-----RPVHAVFVS 230 (402)
T ss_dssp CTTTCCS----CEEEEEECTTSSCEEEEETTS-----------EEEEEETTTTEEEEEEECSSCSS-----SCCEEEECS
T ss_pred ecCCCCC----ceEEEEECCCCCEEEEEecCC-----------cEEEEeCCCCceeeeeccCCCCC-----cceEEEEcC
Confidence 10000 0112333 455444443333 6999999987653322 221111 0112223 6
Q ss_pred CCeEEEEE---eCCCeEEEEEeccC
Q 042133 264 KGCLAIVI---LTPEDIEIWMMKDY 285 (299)
Q Consensus 264 ~g~L~~~~---~~~~~~~iW~l~~~ 285 (299)
+|++.+++ ...+.+.||.+...
T Consensus 231 ~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 231 EGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp TTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CCcEEEEeccCCCCceEEEEcCccc
Confidence 78887777 36889999998653
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=61.56 E-value=60 Score=25.90 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=30.7
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.|..+|+.+.+... .+..+.. .-..|. .+|++.+.+...+.+.||.+.|
T Consensus 265 ~i~iwd~~~~~~~~-~l~gH~~------~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 265 QLVIWKYPTMAKVA-ELKGHTS------RVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTCCEEE-EECCCSS------CEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEEECCCCcEEE-EEcCCCC------CEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 58889998765422 1221211 112344 6788777777899999998865
No 69
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=61.42 E-value=79 Score=27.21 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=53.3
Q ss_pred EEEeEeCCCCCEEEEEEe---CceEEEEEcCCCCceecCCCCCccccCCCCceEEC---CeeEEeecCCCccCccCCCCc
Q 042133 154 YAMGFDGTTSTYKIVRVF---GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDN 227 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~---~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~ 227 (299)
.++.+|+..+. ++... ...+++++.....=+.+... ......++.+| |.+||......
T Consensus 205 ~~iavdp~~g~--ly~td~~~~~~I~~~~~dG~~~~~~~~~----~l~~P~glavd~~~~~lY~aD~~~~---------- 268 (400)
T 3p5b_L 205 RAIVVDPVHGF--MYWTDWGTPAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLH---------- 268 (400)
T ss_dssp EEEEEETTTTE--EEEEECSSSCCEEEEETTSCSCEEEECS----SCSCEEEEEEETTTTEEEEEETTTT----------
T ss_pred ceEEEecccCe--EEEEeCCCCCEEEEEeCCCCccEEEEEC----CCCceEEEEEEeCCCEEEEEECCCC----------
Confidence 67777776542 22222 24566666543222222111 01112356654 78999977655
Q ss_pred cEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEeCCCe
Q 042133 228 CVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVILTPED 276 (299)
Q Consensus 228 ~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~ 276 (299)
.|.++|++...-..+ ..+... .....|. .++.|+++......
T Consensus 269 -~I~~~d~dG~~~~~~~~~~~~l------~~P~gl~v~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 269 -SISSIDVNGGNRKTILEDEKRL------AHPFSLAVFEDKVFWTDIINEA 312 (400)
T ss_dssp -EEEEEETTSCCCEEEEECSSTT------SSEEEEEEETTEEEEEESSSCS
T ss_pred -EEEEEeCCCCccEEEEeCCCCC------CCCEEEEEeCCEEEEecCCCCe
Confidence 799999986544444 322221 1234556 77888877764444
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=61.25 E-value=72 Score=26.66 Aligned_cols=131 Identities=9% Similarity=0.008 Sum_probs=65.9
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v 203 (299)
+..+.+||..+++....-.. .......+.+.+.. .++... +..+.+|+..++.-...-..... .-..+
T Consensus 268 d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~i~~~ 336 (425)
T 1r5m_A 268 DGTLRIWHGGNGNSQNCFYG----HSQSIVSASWVGDD---KVISCSMDGSVRLWSLKQNTLLALSIVDGV----PIFAG 336 (425)
T ss_dssp TSCEEEECSSSBSCSEEECC----CSSCEEEEEEETTT---EEEEEETTSEEEEEETTTTEEEEEEECTTC----CEEEE
T ss_pred CCEEEEEECCCCccceEecC----CCccEEEEEECCCC---EEEEEeCCCcEEEEECCCCcEeEecccCCc----cEEEE
Confidence 56788888777653321111 11112556666643 444444 68899999877542111100000 00122
Q ss_pred EE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCe---------------------eeeeCCCCCCCCCccccceeE
Q 042133 204 SA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE---------------------FKRTPTPDFGSLSYEHERFVM 260 (299)
Q Consensus 204 ~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~---------------------~~~i~~P~~~~~~~~~~~~~~ 260 (299)
.+ +|.+...+..+. .|..+|+.+.+ ...+..+.... .-..
T Consensus 337 ~~s~~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~ 399 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDG-----------QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND------YIFD 399 (425)
T ss_dssp EECTTSSEEEEEETTS-----------CEEEEECHHHHC--------------CEECCEEEEECCTTCCC------CEEE
T ss_pred EEcCCCCEEEEEECCC-----------eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC------ceEE
Confidence 22 355444444332 58888887655 22222221110 1123
Q ss_pred EE--ECCeEEEEEeCCCeEEEEEec
Q 042133 261 IN--LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 261 l~--~~g~L~~~~~~~~~~~iW~l~ 283 (299)
+. .+|++.+++...+.+.||.++
T Consensus 400 ~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 400 LSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEccCCCceEEEEecCceEEEEeec
Confidence 33 578777667788899999875
No 71
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=61.21 E-value=64 Score=30.34 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=23.0
Q ss_pred CceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee
Q 042133 201 NGVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT 243 (299)
Q Consensus 201 ~~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i 243 (299)
.++.++ |.|||...... .|.++|+.......+
T Consensus 543 nGlavd~~~~~LY~aD~~~~-----------~I~~~d~dG~~~~~~ 577 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLH-----------SISSIDVNGGNRKTI 577 (699)
T ss_dssp CCEEECTTTCCEEEEETTTT-----------EEEEECSSSSCCEEE
T ss_pred cEEEEeccCCEEEEEecCCC-----------eEEEEccCCCceEEE
Confidence 467774 78999987665 799999976544333
No 72
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=60.04 E-value=71 Score=26.25 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=72.9
Q ss_pred cEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCC--ceecCCC-CC---ccccC
Q 042133 127 KAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSS--WREISSV-PP---EDLDN 198 (299)
Q Consensus 127 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~--W~~~~~~-~~---~~~~~ 198 (299)
.++++|+.|++....-.. .......++.+|+... +++.. ...+.+|+..... =..+... .. .....
T Consensus 70 ~i~~~d~~~g~~~~~~~~---~~~~~p~gia~d~~g~---l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGK---NLFYLPHGLSIDTDGN---YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp CEEEECTTTCCEEEEECT---TTCSSEEEEEECTTSC---EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred cEEEEECCCCeEEeccCC---CccCCceEEEECCCCC---EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 699999998876432111 1111226777776443 33333 4677778765431 1222110 00 00111
Q ss_pred CCCceEE---CCeeEEeec-CCCccCccCCCCccEEEEEECCCCeeeeeCCCCCC----CCCccccceeEEE--EC-CeE
Q 042133 199 MSNGVSA---YGDMHWADD-DHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFG----SLSYEHERFVMIN--LK-GCL 267 (299)
Q Consensus 199 ~~~~v~~---~G~~yw~~~-~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~----~~~~~~~~~~~l~--~~-g~L 267 (299)
...++.+ +|.+|+... ... .|..||........+..+... ...+ .....|. .+ |.|
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~-----------~I~~~~~~g~~~~~~~~~g~~~~~~~~~~--~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNS-----------RIVQFSPSGKFVTQWGEESSGSSPRPGQF--SVPHSLALVPHLDQL 210 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCC-----------EEEEECTTSCEEEEECEECCSSSCCTTEE--SCEEEEEEETTTTEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCC-----------eEEEEcCCCCEEEEeccCCCCCCCCCccc--CCCcEEEEECCCCEE
Confidence 1235555 578888774 333 699999766555554322111 0000 1123444 34 888
Q ss_pred EEEEeCCCeEEEEEec
Q 042133 268 AIVILTPEDIEIWMMK 283 (299)
Q Consensus 268 ~~~~~~~~~~~iW~l~ 283 (299)
+++......+.+|..+
T Consensus 211 ~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 211 CVADRENGRIQCFKTD 226 (329)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEECCCCEEEEEECC
Confidence 8887788888888876
No 73
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=58.27 E-value=77 Score=26.10 Aligned_cols=144 Identities=13% Similarity=-0.027 Sum_probs=75.9
Q ss_pred cceEEeeEeCC-----cccEEEEcccchhhhc-CCCCCCCCCCc-ceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCC
Q 042133 114 YGLFCFHTRGG-----VGKAYLCNPLRKEVLE-LPQATTGGSWL-DFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSS 184 (299)
Q Consensus 114 ~GLl~~~~~~~-----~~~~~V~NP~T~~~~~-lP~~~~~~~~~-~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~ 184 (299)
+|++++. .+ ...+.++||.|++... ++......... ..-.+.++. +. ++... ...+.+++..++.
T Consensus 2 ~g~~v~n--eg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~-lyv~~~~~~~v~viD~~t~~ 75 (328)
T 3dsm_A 2 SGLFITN--EGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GI-GWIVVNNSHVIFAIDINTFK 75 (328)
T ss_dssp CEEEEEE--CCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TE-EEEEEGGGTEEEEEETTTCC
T ss_pred CeEEEEe--cCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CE-EEEEEcCCCEEEEEECcccE
Confidence 4555555 33 5789999999987642 21100001111 113344443 22 33333 5789999998876
Q ss_pred c-eecCCCCCccccCCCCceE--ECCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCccccceeE
Q 042133 185 W-REISSVPPEDLDNMSNGVS--AYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFVM 260 (299)
Q Consensus 185 W-~~~~~~~~~~~~~~~~~v~--~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~ 260 (299)
- +.+... .....+. -+|.+|....... .|.++|+++.+.. .++.+..... ......
T Consensus 76 ~~~~i~~~------~~p~~i~~~~~g~lyv~~~~~~-----------~v~~iD~~t~~~~~~i~~g~~~~~---~~~p~~ 135 (328)
T 3dsm_A 76 EVGRITGF------TSPRYIHFLSDEKAYVTQIWDY-----------RIFIINPKTYEITGYIECPDMDME---SGSTEQ 135 (328)
T ss_dssp EEEEEECC------SSEEEEEEEETTEEEEEEBSCS-----------EEEEEETTTTEEEEEEECTTCCTT---TCBCCC
T ss_pred EEEEcCCC------CCCcEEEEeCCCeEEEEECCCC-----------eEEEEECCCCeEEEEEEcCCcccc---CCCcce
Confidence 4 333211 1112333 4788888773333 6999999998764 4565541110 001123
Q ss_pred EE-ECCeEEEEEe-CCCeEEEEEec
Q 042133 261 IN-LKGCLAIVIL-TPEDIEIWMMK 283 (299)
Q Consensus 261 l~-~~g~L~~~~~-~~~~~~iW~l~ 283 (299)
|. .+|+|+++.. ..+.+.++-++
T Consensus 136 i~~~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 136 MVQYGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp EEEETTEEEEEECTTCCEEEEEETT
T ss_pred EEEECCEEEEEcCCCCCEEEEEECC
Confidence 34 6777777765 35555555443
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=58.22 E-value=88 Score=26.74 Aligned_cols=88 Identities=8% Similarity=0.074 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcee-cCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee-eCCCCCC
Q 042133 172 GKRSEIYTLGTSSWRE-ISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TPTPDFG 249 (299)
Q Consensus 172 ~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~ 249 (299)
+..+.+|+..++.=.. +.... ..-..+..+|.....+..+. .|..+|+.+.+... +.. +.
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~~~--h~ 336 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHK-----RGIACLQYRDRLVVSGSSDN-----------TIRLWDIECGACLRVLEG--HE 336 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCS-----SCEEEEEEETTEEEEEETTS-----------CEEEEETTTCCEEEEECC--CS
T ss_pred CCeEEEEECCcCcEEEEEcCCC-----CcEEEEEeCCCEEEEEeCCC-----------eEEEEECCCCCEEEEEeC--Cc
Confidence 6788888887753211 11000 01123444565444444433 59999998765432 221 11
Q ss_pred CCCccccceeEEE-ECCeEEEEEeCCCeEEEEEecc
Q 042133 250 SLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 250 ~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
....-. .+|+..+++...+.+.||.+..
T Consensus 337 -------~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 337 -------ELVRCIRFDNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -------SCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred -------CcEEEEEecCCEEEEEeCCCcEEEEECCC
Confidence 112223 6788877777888999998854
No 75
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=57.74 E-value=79 Score=26.04 Aligned_cols=128 Identities=10% Similarity=-0.022 Sum_probs=65.8
Q ss_pred EEEeeecceEEeeEeCCcccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe---CceEEEEEcCCC
Q 042133 108 FISHSAYGLFCFHTRGGVGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF---GKRSEIYTLGTS 183 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~---~~~~~vyss~~~ 183 (299)
.+..+.+|.++... .....+.++|+.|++.. .++............++.++ +. ++++.. +..+.+++..++
T Consensus 88 ~i~~~~~g~lyv~~-~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~---~~-~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQ-IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY---GK-YVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEETTEEEEEE-BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE---TT-EEEEEECTTCCEEEEEETTTT
T ss_pred EEEEeCCCeEEEEE-CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE---CC-EEEEEcCCCCCEEEEEECCCC
Confidence 44445778776663 24678999999998754 34432200000011223332 22 233332 467889998887
Q ss_pred Ccee-cCCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCC
Q 042133 184 SWRE-ISSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPD 247 (299)
Q Consensus 184 ~W~~-~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~ 247 (299)
.... +.... ....+.+ +|.+|..+..... +..-......|.++|.++.+.. .+.+|.
T Consensus 163 ~~~~~i~~g~------~p~~i~~~~dG~l~v~~~~~~~-~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 163 KVVDELTIGI------QPTSLVMDKYNKMWTITDGGYE-GSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp EEEEEEECSS------CBCCCEECTTSEEEEEBCCBCT-TCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred eEEEEEEcCC------CccceEEcCCCCEEEEECCCcc-CCccccCCceEEEEECCCCeEEEEEecCC
Confidence 6432 22110 1123333 5887776654310 0000001247999999988765 456664
No 76
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=57.60 E-value=83 Score=26.22 Aligned_cols=135 Identities=7% Similarity=-0.047 Sum_probs=63.4
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCc-eecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSW-REISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W-~~~~~~~~~~~~~~~~~v 203 (299)
+..+.|||..+++....-... ........+.+.+....+-+..-.+..+.+|+.+++.= ........ .-..+
T Consensus 191 D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-----~v~~v 263 (344)
T 4gqb_B 191 DNRILLWDTRCPKPASQIGCS--APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-----CVTGL 263 (344)
T ss_dssp TSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-----CEEEE
T ss_pred ccccccccccccceeeeeecc--eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-----CEEEE
Confidence 456777877776543221111 11111245556554444322222267888998876431 11111000 00123
Q ss_pred EE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECC-eEEEEEeCCCeEE
Q 042133 204 SA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKG-CLAIVILTPEDIE 278 (299)
Q Consensus 204 ~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g-~L~~~~~~~~~~~ 278 (299)
.+ +|.-|..+...+ ..|..+|+.+.+...+.- +. ..-..|. .+| .|...+...+.+.
T Consensus 264 ~fsp~g~~~lasgs~D----------~~i~vwd~~~~~~~~~~~--H~------~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 264 VFSPHSVPFLASLSED----------CSLAVLDSSLSELFRSQA--HR------DFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp EECSSSSCCEEEEETT----------SCEEEECTTCCEEEEECC--CS------SCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEccCCCeEEEEEeCC----------CeEEEEECCCCcEEEEcC--CC------CCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 33 343222222211 258889998887544321 11 1112344 345 4655556888999
Q ss_pred EEEecc
Q 042133 279 IWMMKD 284 (299)
Q Consensus 279 iW~l~~ 284 (299)
+|.++.
T Consensus 326 ~w~v~~ 331 (344)
T 4gqb_B 326 HHVVPT 331 (344)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999874
No 77
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=56.37 E-value=80 Score=25.67 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=53.3
Q ss_pred cccEEEEcccchhhhc-CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 125 VGKAYLCNPLRKEVLE-LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
...+.++|+.+++... ++... ........++.+++..+. ++... ...+.+|+..++.-...-..+. ..
T Consensus 205 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~--l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~ 275 (353)
T 3vgz_A 205 DGELITIDTADNKILSRKKLLD-DGKEHFFINISLDTARQR--AFITDSKAAEVLVVDTRNGNILAKVAAPE------SL 275 (353)
T ss_dssp TSEEEEEETTTTEEEEEEECCC-SSSCCCEEEEEEETTTTE--EEEEESSSSEEEEEETTTCCEEEEEECSS------CC
T ss_pred CCeEEEEECCCCeEEEEEEcCC-CCCCcccceEEECCCCCE--EEEEeCCCCEEEEEECCCCcEEEEEEcCC------Cc
Confidence 5577888888876543 22211 011222256677775432 22222 4788899988765422111111 11
Q ss_pred ceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCC
Q 042133 202 GVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTP 246 (299)
Q Consensus 202 ~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P 246 (299)
.+.+ +|. +|....... .|..+|+.+.+.. .++.+
T Consensus 276 ~~~~s~dg~~l~v~~~~~~-----------~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAG-----------KVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp CEEEETTTTEEEEEETTTT-----------EEEEEETTTTEEEEEEECC
T ss_pred eEEECCCCCEEEEEECCCC-----------eEEEEECCCCeEEEEEecC
Confidence 2333 566 555443333 6999999887653 33443
No 78
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=54.56 E-value=78 Score=26.49 Aligned_cols=146 Identities=8% Similarity=0.059 Sum_probs=67.4
Q ss_pred CCcccEEEEcccchh------hhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCcc
Q 042133 123 GGVGKAYLCNPLRKE------VLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPED 195 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~------~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~ 195 (299)
..+..+.|||..+++ ........ .........+.+.+..+. .++... +..+.+|+..++.-...-......
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 210 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTT-EEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred cCCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCc-EEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence 446789999998876 21111100 001111155666554333 233333 678999998875432211111000
Q ss_pred c--cCCCCceEE--CC-eeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCC-CCCCCCccccceeEEE--E-CCe
Q 042133 196 L--DNMSNGVSA--YG-DMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTP-DFGSLSYEHERFVMIN--L-KGC 266 (299)
Q Consensus 196 ~--~~~~~~v~~--~G-~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P-~~~~~~~~~~~~~~l~--~-~g~ 266 (299)
. ...-..+.+ +| .+...+..+. ....|..+|+.+..-....+. .+. ..-..+. . +|+
T Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~--------~~~~i~~~d~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 211 SGIKQQLSVVEWHPKNSTRVATATGSD--------NDPSILIWDLRNANTPLQTLNQGHQ------KGILSLDWCHQDEH 276 (416)
T ss_dssp SCCCCCEEEEEECSSCTTEEEEEECCS--------SSCCCCEEETTSTTSCSBCCCSCCS------SCEEEEEECSSCSS
T ss_pred cccCCceEEEEECCCCCCEEEEEECCC--------CCceEEEEeCCCCCCCcEEeecCcc------CceeEEEeCCCCCC
Confidence 0 000112222 23 2222222220 011477888887532111222 111 1112333 3 788
Q ss_pred EEEEEeCCCeEEEEEecc
Q 042133 267 LAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 267 L~~~~~~~~~~~iW~l~~ 284 (299)
+.+++...+.+.||.++.
T Consensus 277 ~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CEEEEESSSEEEEECSSS
T ss_pred eEEEEeCCCCEEEeeCCC
Confidence 888777888999998764
No 79
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=52.16 E-value=66 Score=26.71 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=39.7
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCe-eeeeCCCCCCCCCccccceeEEE-E--CCeEEEEEe---
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE-FKRTPTPDFGSLSYEHERFVMIN-L--KGCLAIVIL--- 272 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~l~-~--~g~L~~~~~--- 272 (299)
++.+ +|.+|++..... ......|++||+++.+ ...+.+|..... .......|. . +|.+++...
T Consensus 71 gv~~d~~g~L~v~D~g~~------~~~~~~i~~~d~~tg~~~~~~~~~~~~~~--~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQ------SKSVPKLVAWDTLNNQLSRVIYLPPPITL--SNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp EEEECSSSEEEEEECHHH------HTSCCEEEEEETTTTEEEEEEECCTTTSC--TTCCCCEEEEETTTTEEEEEECCSG
T ss_pred EEEEcCCCcEEEEcCCCC------cCCCCeEEEEECCCCeEEEEEECChhhcc--cccccceEEEecCCCEEEEEcCccC
Confidence 5555 478888764310 0001269999999887 566677643221 001112333 2 466666655
Q ss_pred CCCeEEEEEec
Q 042133 273 TPEDIEIWMMK 283 (299)
Q Consensus 273 ~~~~~~iW~l~ 283 (299)
....+.+|.++
T Consensus 143 ~~~~i~v~d~~ 153 (343)
T 2qe8_A 143 DKAALIRVDLQ 153 (343)
T ss_dssp GGCEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 45566666554
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=51.96 E-value=37 Score=28.05 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCceecCCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCC
Q 042133 172 GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDF 248 (299)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~ 248 (299)
+..+.+|+..++.+..+.....+.. .-..+.+ +|.....+..+. .|..+|+.+.++... .+...
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNG--QVTGVDWAPDSNRIVTCGTDR-----------NAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSS--CEEEEEEETTTTEEEEEETTS-----------CEEEEEEETTEEEEEEECCCC
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCC--cccEEEEeCCCCEEEEEcCCC-----------eEEEEECCCCeeeeeEEeecC
Confidence 6788888888876654432211100 0012222 354333333332 588999988875433 32222
Q ss_pred CCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 249 GSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 249 ~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.. .-..+. .+|+..+++...+.+.||.++.
T Consensus 96 ~~------~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 96 NR------AARCVRWAPNEKKFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp SS------CEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred CC------ceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence 21 112333 5777777777888999999875
No 81
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=51.90 E-value=91 Score=24.97 Aligned_cols=133 Identities=9% Similarity=0.083 Sum_probs=66.2
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCc
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNG 202 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~ 202 (299)
.+..+.++|..+++........ ........+.+.+.. .+ ++... +..+.+|+..++.-...-..... .-..
T Consensus 117 ~d~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~----~i~~ 188 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIKAELT--SSAPACYALAISPDS-KV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTD----GASC 188 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTS-SE-EEEEETTSCEEEEETTTTEEEEEECCCSS----CEEE
T ss_pred CCCcEEEEECCCCCcceeeecc--cCCCceEEEEECCCC-CE-EEEEeCCCcEEEEeCCCCceeeeeecccC----ceEE
Confidence 3667888888877633222111 111112455555532 22 23222 67888999887643221110000 0112
Q ss_pred eEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeE
Q 042133 203 VSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDI 277 (299)
Q Consensus 203 v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~ 277 (299)
+.+ +|.....+..+. .|..+|+.+.+.... ..+.. -..+. .+|++.+++...+.+
T Consensus 189 ~~~~~~~~~l~~~~~dg-----------~i~~~d~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~~~~~i 248 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDN-----------TVRSWDLREGRQLQQHDFTSQ---------IFSLGYCPTGEWLAVGMESSNV 248 (337)
T ss_dssp EEECTTSSEEEEEETTS-----------EEEEEETTTTEEEEEEECSSC---------EEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCCEEEEEecCC-----------cEEEEECCCCceEeeecCCCc---------eEEEEECCCCCEEEEEcCCCcE
Confidence 222 454444444333 699999987754332 22111 12233 567777777677788
Q ss_pred EEEEecc
Q 042133 278 EIWMMKD 284 (299)
Q Consensus 278 ~iW~l~~ 284 (299)
.+|.++.
T Consensus 249 ~~~~~~~ 255 (337)
T 1gxr_A 249 EVLHVNK 255 (337)
T ss_dssp EEEETTS
T ss_pred EEEECCC
Confidence 8888764
No 82
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=51.64 E-value=1.2e+02 Score=28.55 Aligned_cols=59 Identities=5% Similarity=0.000 Sum_probs=31.8
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCC-CCEEEEEEeCceEEEEEcCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTT-STYKIVRVFGKRSEIYTLGTS 183 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~-~~ykvv~~~~~~~~vyss~~~ 183 (299)
..++.+.|||..++++..+-... ........+.+.+.. +.+-+..-.+..+.+|+..++
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred eCCCeEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 34678888888887643222221 111122555666552 233222222688999998775
No 83
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=51.28 E-value=97 Score=25.12 Aligned_cols=148 Identities=10% Similarity=-0.016 Sum_probs=73.1
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--C----ceEEEEEcCCCCc
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--G----KRSEIYTLGTSSW 185 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~----~~~~vyss~~~~W 185 (299)
+.+|-+++.. .....++++|+.+++...+.... .....++.+++.. ++++.. . ..+.+|+..++.-
T Consensus 53 ~~~g~l~~~~-~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 53 DRQGQLFLLD-VFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp CTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCCCEEEEE-CCCCEEEEEeCCCCcEEEEeeCC----CCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 4566665542 33568999999988866543111 1122566666543 233332 2 3677888777654
Q ss_pred eec-CCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE
Q 042133 186 REI-SSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 186 ~~~-~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~ 262 (299)
+.. ...... .....+.+ +|.+|+....+. .......|..+|.++.++..+.- ... ....+.
T Consensus 125 ~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~--~~~------~~~~i~ 188 (333)
T 2dg1_A 125 QDIIEDLSTA---YCIDDMVFDSKGGFYFTDFRGY-----STNPLGGVYYVSPDFRTVTPIIQ--NIS------VANGIA 188 (333)
T ss_dssp EEEECSSSSC---CCEEEEEECTTSCEEEEECCCB-----TTBCCEEEEEECTTSCCEEEEEE--EES------SEEEEE
T ss_pred EEEEccCccC---CcccceEECCCCCEEEEecccc-----ccCCCceEEEEeCCCCEEEEeec--CCC------cccceE
Confidence 422 111100 01113333 577766554321 00112468999988776655421 100 112233
Q ss_pred --ECCe-EEEEEeCCCeEEEEEec
Q 042133 263 --LKGC-LAIVILTPEDIEIWMMK 283 (299)
Q Consensus 263 --~~g~-L~~~~~~~~~~~iW~l~ 283 (299)
.+|+ |+++......+.+|.++
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCeEEEEEec
Confidence 4554 55544455566666664
No 84
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=51.04 E-value=8.4 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhcCCh
Q 042133 4 RERPSIPDEIVDEIIIKLPA 23 (299)
Q Consensus 4 ~~~~~LP~Dll~~Il~rLp~ 23 (299)
.....||.|+.+|||+--..
T Consensus 19 eVF~~LP~dIQ~Ells~~~~ 38 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSGKSR 38 (48)
T ss_dssp GGTTTSCHHHHHHHTTCCCS
T ss_pred HHHHHCcHHHHHHHHhcchH
Confidence 34557999999999886543
No 85
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=50.86 E-value=1e+02 Score=25.28 Aligned_cols=136 Identities=10% Similarity=0.088 Sum_probs=66.5
Q ss_pred CCcccEEEEcccchhhhc-CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC--ceecCCCCCccccC
Q 042133 123 GGVGKAYLCNPLRKEVLE-LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS--WREISSVPPEDLDN 198 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~--W~~~~~~~~~~~~~ 198 (299)
..+..+.|||..+++... ++.. ......+.+.+.. .+ ++... +..+.+|+..++. .+.......+....
T Consensus 74 s~Dg~v~iWd~~~~~~~~~~~~~-----~~~v~~~~~s~~~-~~-l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v 146 (340)
T 1got_B 74 SQDGKLIIWDSYTTNKVHAIPLR-----SSWVMTCAYAPSG-NY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146 (340)
T ss_dssp ETTTEEEEEETTTCCEEEEEECS-----SSCEEEEEECTTS-SE-EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred eCCCcEEEEECCCCCcceEeecC-----CccEEEEEECCCC-CE-EEEEeCCCeEEEEECccCCCcceeEEEecCCCccE
Confidence 336778888887765432 2211 1112455555543 22 22222 6788899887642 21111100000000
Q ss_pred CCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCe
Q 042133 199 MSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPED 276 (299)
Q Consensus 199 ~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~ 276 (299)
..-...-+|.+.--..++ .|..+|+.+.+.... +..+.. .-..+. .+|++.+.+...+.
T Consensus 147 ~~~~~~~~~~l~s~s~d~------------~i~~wd~~~~~~~~~-~~~h~~------~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 147 SCCRFLDDNQIVTSSGDT------------TCALWDIETGQQTTT-FTGHTG------DVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp EEEEEEETTEEEEEETTS------------CEEEEETTTTEEEEE-ECCCSS------CEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCcEEEEECCC------------cEEEEECCCCcEEEE-EcCCCC------ceEEEEECCCCCEEEEEeCCCc
Confidence 000011234433333333 488999988764332 111111 112333 67888777778889
Q ss_pred EEEEEecc
Q 042133 277 IEIWMMKD 284 (299)
Q Consensus 277 ~~iW~l~~ 284 (299)
+.||.+..
T Consensus 208 v~~wd~~~ 215 (340)
T 1got_B 208 AKLWDVRE 215 (340)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99998764
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=50.65 E-value=84 Score=25.97 Aligned_cols=23 Identities=9% Similarity=-0.138 Sum_probs=17.2
Q ss_pred ECCeEEEEEeCCCeEEEEEeccC
Q 042133 263 LKGCLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~~iW~l~~~ 285 (299)
.+|++.+.+...+.+.||.++..
T Consensus 215 p~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 215 PSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp TTSSCEEEEETTTEEC-CEECST
T ss_pred CCCCEEEEEeCCCcEEEEECCCC
Confidence 57887777778889999998754
No 87
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=50.61 E-value=1.1e+02 Score=25.44 Aligned_cols=141 Identities=8% Similarity=0.009 Sum_probs=73.1
Q ss_pred eeecce-EEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCcee
Q 042133 111 HSAYGL-FCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWRE 187 (299)
Q Consensus 111 ~s~~GL-l~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~ 187 (299)
-+.+|- +++.. ..+..+.++|+.+++....-... . ....+.+++... .++... +..+.+|+..++.-..
T Consensus 39 ~s~dg~~l~~~~-~~d~~i~v~d~~~~~~~~~~~~~--~---~v~~~~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 39 ISPDGTKVYVAN-AHSNDVSIIDTATNNVIATVPAG--S---SPQGVAVSPDGK--QVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp ECTTSSEEEEEE-GGGTEEEEEETTTTEEEEEEECS--S---SEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEC-CCCCeEEEEECCCCeEEEEEECC--C---CccceEECCCCC--EEEEEECCCCEEEEEECCCCeEEE
Confidence 344553 33332 34678999999888764322221 1 224556665432 233333 4789999988865422
Q ss_pred cCCCCCccccCCCCceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-
Q 042133 188 ISSVPPEDLDNMSNGVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN- 262 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~- 262 (299)
.-..... ..++.+ +|. +|....... .|..+|+.+.+.... ..... ...+.
T Consensus 111 ~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~-----------~v~~~d~~~~~~~~~~~~~~~---------~~~~~~ 165 (391)
T 1l0q_A 111 TVKTGKS-----PLGLALSPDGKKLYVTNNGDK-----------TVSVINTVTKAVINTVSVGRS---------PKGIAV 165 (391)
T ss_dssp EEECSSS-----EEEEEECTTSSEEEEEETTTT-----------EEEEEETTTTEEEEEEECCSS---------EEEEEE
T ss_pred EEeCCCC-----cceEEECCCCCEEEEEeCCCC-----------EEEEEECCCCcEEEEEecCCC---------cceEEE
Confidence 2111100 112333 455 444444333 799999988765433 22111 12233
Q ss_pred -ECCeEEEE-EeCCCeEEEEEecc
Q 042133 263 -LKGCLAIV-ILTPEDIEIWMMKD 284 (299)
Q Consensus 263 -~~g~L~~~-~~~~~~~~iW~l~~ 284 (299)
.+|+..++ ....+.+.+|.++.
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC
Confidence 55655444 44777888887753
No 88
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=50.29 E-value=91 Score=24.54 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=62.1
Q ss_pred EEEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCc
Q 042133 108 FISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSW 185 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W 185 (299)
.+.-..+|-+.+.. .....+.++||. ++...++.+. ......++..|+.. ++.... ...+.+|+.. +..
T Consensus 24 ~i~~d~~g~l~v~~-~~~~~v~~~~~~-~~~~~~~~~~---~~~~~~~i~~~~~g---~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 24 GITSSEDGKVWFTQ-HKANKISSLDQS-GRIKEFEVPT---PDAKVMCLIVSSLG---DIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEECTTSCEEEEE-TTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCE
T ss_pred eeeECCCCCEEEEc-CCCCeEEEECCC-CceEEEECCC---CCCcceeEEECCCC---CEEEEecCCCeEEEECCC-CCe
Confidence 34444567666662 335678889988 6655443221 11222566666433 233332 3567778777 666
Q ss_pred eecCCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCC
Q 042133 186 REISSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPD 247 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~ 247 (299)
+........ ....++.+ +|.+|+...... .|..+|.+ .+...+.+|.
T Consensus 95 ~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 95 TEYPLPQPD---SGPYGITEGLNGDIWFTQLNGD-----------RIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp EEEECSSTT---CCEEEEEECSTTCEEEEETTTT-----------EEEEECTT-SCEEEEECSS
T ss_pred EEecCCCCC---CCCccceECCCCCEEEEccCCC-----------eEEEECCC-CCEEEccCCC
Confidence 544321110 11224444 477776655333 69999998 6666665553
No 89
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=50.09 E-value=89 Score=25.19 Aligned_cols=56 Identities=4% Similarity=-0.011 Sum_probs=30.7
Q ss_pred EEEEEECCCCeeeee-CCCCCC--CCCccccc-eeEEEECCeEEEEEe-CCCeEEEEEecc
Q 042133 229 VIISFDFKKEEFKRT-PTPDFG--SLSYEHER-FVMINLKGCLAIVIL-TPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~~~i-~~P~~~--~~~~~~~~-~~~l~~~g~L~~~~~-~~~~~~iW~l~~ 284 (299)
.|..+|+++.+...+ .++... ........ ...+..+|+..++.. ..+.+.||.+++
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 688999998877444 222211 00000000 112226676555544 788999999874
No 90
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=49.33 E-value=1e+02 Score=24.82 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=73.3
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCc--eecC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSW--REIS 189 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W--~~~~ 189 (299)
.+.+++.. .....+.++|+.|++....-..+ ... ..+.+++..+ + ++... +..+.+++..++.- +.+.
T Consensus 9 ~~~~~v~~-~~~~~v~~~d~~~~~~~~~~~~~----~~~-~~~~~s~dg~-~-l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 9 SNFGIVVE-QHLRRISFFSTDTLEILNQITLG----YDF-VDTAITSDCS-N-VVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp CCEEEEEE-GGGTEEEEEETTTCCEEEEEECC----CCE-EEEEECSSSC-E-EEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred CCEEEEEe-cCCCeEEEEeCcccceeeeEEcc----CCc-ceEEEcCCCC-E-EEEEeCCCCeEEEEECCCCceeEEecc
Confidence 34444443 34678999999988764322221 111 2566666543 2 33333 56888999888764 2221
Q ss_pred CCCCccccCCCCceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeee-eCCCCCCCCCccccceeEEE--E
Q 042133 190 SVPPEDLDNMSNGVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN--L 263 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~--~ 263 (299)
... ....++.+ +|. +| ...... ....|..+|+++.+... ++.... ...+. -
T Consensus 81 ~~~-----~~~~~~~~s~dg~~l~-~~~~~~--------~~~~i~v~d~~~~~~~~~~~~~~~---------~~~~~~sp 137 (331)
T 3u4y_A 81 EGQ-----SSMADVDITPDDQFAV-TVTGLN--------HPFNMQSYSFLKNKFISTIPIPYD---------AVGIAISP 137 (331)
T ss_dssp ECS-----SCCCCEEECTTSSEEE-ECCCSS--------SSCEEEEEETTTTEEEEEEECCTT---------EEEEEECT
T ss_pred cCC-----CCccceEECCCCCEEE-EecCCC--------CcccEEEEECCCCCeEEEEECCCC---------ccceEECC
Confidence 110 00111332 454 44 333221 11269999998876533 232211 12333 6
Q ss_pred CCe-EEEEEeCCCe-EEEEEeccC
Q 042133 264 KGC-LAIVILTPED-IEIWMMKDY 285 (299)
Q Consensus 264 ~g~-L~~~~~~~~~-~~iW~l~~~ 285 (299)
+|+ |++....... +.+|.++..
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEecCCCceEEEEEECCC
Confidence 676 5555556566 999998753
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=49.26 E-value=1.1e+02 Score=25.10 Aligned_cols=151 Identities=8% Similarity=0.003 Sum_probs=75.1
Q ss_pred EEEeeecceEEeeEeCCcccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCC-CCCEEEEEEe-CceEEEEEcCCCC
Q 042133 108 FISHSAYGLFCFHTRGGVGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGT-TSTYKIVRVF-GKRSEIYTLGTSS 184 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~-~~~ykvv~~~-~~~~~vyss~~~~ 184 (299)
.+.++.+|.+.+. +......++|..+++.. ...... ......+.+.+. .+.+ ++... +..+.+|+..++.
T Consensus 88 ~~s~s~D~~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~ 160 (343)
T 3lrv_A 88 IISRGPCNRLLLL--YPGNQITILDSKTNKVLREIEVDS----ANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDS 160 (343)
T ss_dssp EEEECSTTEEEEE--ETTTEEEEEETTTCCEEEEEECCC----SSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSC
T ss_pred eEEecCCCeEEEE--EccCceEEeecCCcceeEEeecCC----CCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCc
Confidence 3445666766666 33556666777666522 111110 111245556552 2233 33233 6789999988765
Q ss_pred ceecCCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE
Q 042133 185 WREISSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 185 W~~~~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~ 262 (299)
-......... ..-..+.+ +|.+...+..+. .|..+|+.+.+.....+..... ..-..|.
T Consensus 161 ~~~~~~~~~~---~~i~~~~~~pdg~~lasg~~dg-----------~i~iwd~~~~~~~~~~~~~~h~-----~~v~~l~ 221 (343)
T 3lrv_A 161 QYIVHSAKSD---VEYSSGVLHKDSLLLALYSPDG-----------ILDVYNLSSPDQASSRFPVDEE-----AKIKEVK 221 (343)
T ss_dssp EEEEECCCSS---CCCCEEEECTTSCEEEEECTTS-----------CEEEEESSCTTSCCEECCCCTT-----SCEEEEE
T ss_pred EEEEEecCCC---CceEEEEECCCCCEEEEEcCCC-----------EEEEEECCCCCCCccEEeccCC-----CCEEEEE
Confidence 4222111100 00112222 455554433333 5999999987654222222111 1112344
Q ss_pred --ECCeEEEEEeCCCeEEEEEeccC
Q 042133 263 --LKGCLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 263 --~~g~L~~~~~~~~~~~iW~l~~~ 285 (299)
.+|...+++.+. .+.||-+...
T Consensus 222 fs~~g~~l~s~~~~-~v~iwd~~~~ 245 (343)
T 3lrv_A 222 FADNGYWMVVECDQ-TVVCFDLRKD 245 (343)
T ss_dssp ECTTSSEEEEEESS-BEEEEETTSS
T ss_pred EeCCCCEEEEEeCC-eEEEEEcCCC
Confidence 567776666644 9999998754
No 92
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=48.75 E-value=1.3e+02 Score=25.74 Aligned_cols=92 Identities=9% Similarity=0.237 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCce-ecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCC
Q 042133 172 GKRSEIYTLGTSSWR-EISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFG 249 (299)
Q Consensus 172 ~~~~~vyss~~~~W~-~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~ 249 (299)
+..+.+|+..++.-. ...... .....+..+|.....+..+. .|..+|+.+.+. ..+..+...
T Consensus 298 d~~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIHTLTGHQ-----SLTSGMELKDNILVSGNADS-----------TVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp TSCEEEEETTTCCEEEEECCCC-----SCEEEEEEETTEEEEEETTS-----------CEEEEETTTCCEEEEECSTTSC
T ss_pred CCeEEEEECCCCCEEEEEcCCc-----ccEEEEEEeCCEEEEEeCCC-----------eEEEEECCCCcEEEEEccCCCC
Confidence 678888888775421 111100 01123445555444444333 599999987654 334444322
Q ss_pred CCCccccceeEEEECCeEEEEEeCCCeEEEEEecc
Q 042133 250 SLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 250 ~~~~~~~~~~~l~~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
. ..-..+..+|++.+++...+.+.||.++.
T Consensus 362 ~-----~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 362 Q-----SAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp S-----SCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred C-----CCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 2 11122336788777777888999998764
No 93
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=48.59 E-value=1.2e+02 Score=25.29 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=56.9
Q ss_pred EeeecceEEeeEeCCcccEEEEcccchhhhc---CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC-
Q 042133 110 SHSAYGLFCFHTRGGVGKAYLCNPLRKEVLE---LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS- 184 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~---lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~- 184 (299)
....+|.+++. .....++.+|+.|++... ++... ..... .+ +. +|+... +..+..|+..++.
T Consensus 99 ~~~~~~~v~v~--~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~p~--~~---~~-~v~v~~~~g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 99 VTVSGGHVYIG--SEKAQVYALNTSDGTVAWQTKVAGEA-----LSRPV--VS---DG-LVLIHTSNGQLQALNEADGAV 165 (376)
T ss_dssp EEEETTEEEEE--ETTSEEEEEETTTCCEEEEEECSSCC-----CSCCE--EE---TT-EEEEECTTSEEEEEETTTCCE
T ss_pred ceEeCCEEEEE--cCCCEEEEEECCCCCEEEEEeCCCce-----EcCCE--EE---CC-EEEEEcCCCeEEEEECCCCcE
Confidence 34567777777 446789999999987432 22111 00001 01 11 233222 4567788887764
Q ss_pred -ceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCee
Q 042133 185 -WREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF 240 (299)
Q Consensus 185 -W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~ 240 (299)
|+.....+..........+..+|.+|.-...+ .+.++|..+.+.
T Consensus 166 ~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g------------~l~~~d~~tG~~ 210 (376)
T 3q7m_A 166 KWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNG------------RVSAVLMEQGQM 210 (376)
T ss_dssp EEEEECCC-----CCCCCCEEETTEEEECCTTT------------EEEEEETTTCCE
T ss_pred EEEEeCCCCceeecCCCCcEEECCEEEEEcCCC------------EEEEEECCCCcE
Confidence 87654322211111234566678877654443 589999876644
No 94
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=48.26 E-value=1.4e+02 Score=27.82 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=60.7
Q ss_pred ecceEEeeEeCCcccEEEEcccchhh--hcCCCCCCCCC-----CcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC-
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEV--LELPQATTGGS-----WLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS- 183 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~--~~lP~~~~~~~-----~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~- 183 (299)
.+|.|++. .....++-.|+.||+. +.-+..+.... .....+..++. =+|+... +..+..++..||
T Consensus 65 ~~g~vyv~--~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~v~~~dg~l~alD~~tG~ 138 (668)
T 1kv9_A 65 HDGVIYTS--MSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG----DKVYVGTLDGRLIALDAKTGK 138 (668)
T ss_dssp ETTEEEEE--EGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB----TEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEE--CCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC----CEEEEEcCCCEEEEEECCCCC
Confidence 46777776 4466788888888873 32222110000 00001111111 1333333 456777777765
Q ss_pred -CceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC--eeee
Q 042133 184 -SWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE--EFKR 242 (299)
Q Consensus 184 -~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~--~~~~ 242 (299)
.|+.-...+..........+..+|.+|.-..... ......|.+||.++. .|+.
T Consensus 139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~------~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE------YGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT------TCCBCEEEEEETTTCCEEEEE
T ss_pred EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCC------cCCCCEEEEEECCCCcEEEEe
Confidence 4876443222112223456778999987654321 012247999999876 4544
No 95
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=48.26 E-value=52 Score=26.63 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=24.3
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCC
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPD 247 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~ 247 (299)
+|.+||...... .|..+|+++.+...+..|.
T Consensus 24 ~~~l~~~d~~~~-----------~i~~~d~~~~~~~~~~~~~ 54 (297)
T 3g4e_A 24 SNSLLFVDIPAK-----------KVCRWDSFTKQVQRVTMDA 54 (297)
T ss_dssp TTEEEEEETTTT-----------EEEEEETTTCCEEEEECSS
T ss_pred CCEEEEEECCCC-----------EEEEEECCCCcEEEEeCCC
Confidence 478999987765 7999999988776666553
No 96
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=48.17 E-value=1.2e+02 Score=25.28 Aligned_cols=142 Identities=9% Similarity=0.027 Sum_probs=70.9
Q ss_pred CCcccEEEEcccchhhhc-CCCCCCCCC-CcceEEEeEeCCCCCEEEEEEeCc---eEEEEEcCCCCc--eecCCCCCcc
Q 042133 123 GGVGKAYLCNPLRKEVLE-LPQATTGGS-WLDFYAMGFDGTTSTYKIVRVFGK---RSEIYTLGTSSW--REISSVPPED 195 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~-lP~~~~~~~-~~~~~~l~~d~~~~~ykvv~~~~~---~~~vyss~~~~W--~~~~~~~~~~ 195 (299)
..+..+.+||..+++... +........ ......+.+.+....+-+..-.+. .+.+|+.+++.- +.... .+.
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~--~~~ 262 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQ 262 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--CCS
T ss_pred cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--Ccc
Confidence 447789999998876432 222110000 112256666665433322222244 899999887531 11110 000
Q ss_pred ccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEEECC-eEEEE
Q 042133 196 LDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMINLKG-CLAIV 270 (299)
Q Consensus 196 ~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~~~g-~L~~~ 270 (299)
..-..+.+ +|.+...+..+. .|..+|+.+.+. ..+....... ....+..+| ++.++
T Consensus 263 --~~v~~~~~s~~~~~~l~s~~~dg-----------~v~~wd~~~~~~~~~~~~~~~~v------~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 263 --KGILSLDWCHQDEHLLLSSGRDN-----------TVLLWNPESAEQLSQFPARGNWC------FKTKFAPEAPDLFAC 323 (416)
T ss_dssp --SCEEEEEECSSCSSCEEEEESSS-----------EEEEECSSSCCEEEEEECSSSCC------CCEEECTTCTTEEEE
T ss_pred --CceeEEEeCCCCCCeEEEEeCCC-----------CEEEeeCCCCccceeecCCCCce------EEEEECCCCCCEEEE
Confidence 00113333 455444444433 688999987643 2233222111 112222455 66666
Q ss_pred EeCCCeEEEEEeccC
Q 042133 271 ILTPEDIEIWMMKDY 285 (299)
Q Consensus 271 ~~~~~~~~iW~l~~~ 285 (299)
+...+.+.||.++..
T Consensus 324 ~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCSSSEEEEEESCCC
T ss_pred EecCCcEEEEEccCC
Confidence 668889999998754
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=48.08 E-value=1.3e+02 Score=25.69 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=59.7
Q ss_pred EEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCcc
Q 042133 154 YAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNC 228 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~ 228 (299)
..+.+.|.... +++.+ +..+.+++..++.-........+. ..-.++.+ +|.....+..+.
T Consensus 123 ~~l~~~P~~~~--~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~~~~~l~s~s~D~----------- 187 (435)
T 4e54_B 123 TSLAWHPTHPS--TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEG----------- 187 (435)
T ss_dssp EEEEECSSCTT--CEEEEETTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSSCTTEEEEECSSS-----------
T ss_pred EEEEEeCCCCC--EEEEEeCCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCCCCCEEEEEeCCC-----------
Confidence 56777775443 34444 678889888776543222110010 01123433 343333333222
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEec
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~ 283 (299)
.|..+|++++....+........ ....+. .+|++.+++...+.+.||.++
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINI-----WFCSLDVSASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSC-----CCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred EEEEeeccCCceeEEeccCCCCc-----cEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence 58889999887766644332221 112233 577777777788889999875
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=47.77 E-value=1.2e+02 Score=25.35 Aligned_cols=154 Identities=9% Similarity=0.023 Sum_probs=74.1
Q ss_pred eecceEEeeEeCCcccEEEEcccch-hh-hcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRK-EV-LELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~-~~-~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~ 189 (299)
+.+++.++.....+..+.|||.... +. ..++... ........+.+.+..+.+-+..-.+..+.+|+..++......
T Consensus 43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC--GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp CSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC--CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred CCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe--cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 3334444331134678888886442 22 1222221 111222667777744443333222788999999887542211
Q ss_pred CCCCccccCCC---CceEE--CC-eeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE
Q 042133 190 SVPPEDLDNMS---NGVSA--YG-DMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 190 ~~~~~~~~~~~---~~v~~--~G-~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~ 262 (299)
..+........ ..+.+ +| .+...+..+ ..|..+|+.+.+.... ....+.. .-..+.
T Consensus 121 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~------~v~~~~ 183 (402)
T 2aq5_A 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----------NVILVWDVGTGAAVLTLGPDVHPD------TIYSVD 183 (402)
T ss_dssp CSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----------SCEEEEETTTTEEEEEECTTTCCS------CEEEEE
T ss_pred CCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----------CEEEEEECCCCCccEEEecCCCCC------ceEEEE
Confidence 11111111111 12222 23 233333322 2588999988765332 2121211 112333
Q ss_pred --ECCeEEEEEeCCCeEEEEEecc
Q 042133 263 --LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 263 --~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.+|++.+++...+.+.||.++.
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTT
T ss_pred ECCCCCEEEEEecCCcEEEEeCCC
Confidence 5777777777888899998763
No 99
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=47.63 E-value=1.2e+02 Score=25.02 Aligned_cols=148 Identities=7% Similarity=0.039 Sum_probs=69.2
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC-ceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS-WREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~-W~~~~ 189 (299)
+-+|-.++.. ..+..+.||+..++....+-... ........+.+.+.. . .++... +..+.+++..++. +..+.
T Consensus 70 sp~g~~l~s~-s~D~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~-~-~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 70 SPCGNYLASA-SFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSG-N-LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp CTTSSEEEEE-ETTSCEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTS-S-EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEE-ECCCcEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCC-C-EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 3344433332 33566777776665432221111 111112455666543 2 222222 6788888887642 22221
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--EC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LK 264 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~ 264 (299)
....+.. .-..+.+ +|.+...+..+. .|..+|..+.++..+ .+..+.. .-..|. .+
T Consensus 145 ~~~~h~~--~v~~~~~~p~~~~l~s~s~d~-----------~i~~w~~~~~~~~~~~~~~~h~~------~v~~l~~sp~ 205 (345)
T 3fm0_A 145 VLNSHTQ--DVKHVVWHPSQELLASASYDD-----------TVKLYREEEDDWVCCATLEGHES------TVWSLAFDPS 205 (345)
T ss_dssp EECCCCS--CEEEEEECSSSSCEEEEETTS-----------CEEEEEEETTEEEEEEEECCCSS------CEEEEEECTT
T ss_pred EecCcCC--CeEEEEECCCCCEEEEEeCCC-----------cEEEEEecCCCEEEEEEecCCCC------ceEEEEECCC
Confidence 1100000 0011111 333333332222 478888887766433 2322221 123344 67
Q ss_pred CeEEEEEeCCCeEEEEEec
Q 042133 265 GCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 265 g~L~~~~~~~~~~~iW~l~ 283 (299)
|++.+.+...+.+.||.+.
T Consensus 206 g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp SSEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEeCCCeEEEeccc
Confidence 8877777788999999863
No 100
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=46.75 E-value=1.4e+02 Score=25.49 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=53.0
Q ss_pred EEEeEeCCCCCEEEEEEe--C-ceEEEEEcCCCCceecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCc
Q 042133 154 YAMGFDGTTSTYKIVRVF--G-KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDN 227 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~--~-~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~ 227 (299)
.++..|+..+ .++... . ..++.++.....-+.+.... .....++.+ +|.+||......
T Consensus 205 ~giavdp~~g--~ly~td~~~~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~~~---------- 268 (386)
T 3v65_B 205 RAIALHPMEG--TIYWTDWGNTPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAKHH---------- 268 (386)
T ss_dssp EEEEEETTTT--EEEEEECSSSCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETTTT----------
T ss_pred cEEEEEcCCC--eEEEeccCCCCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECCCC----------
Confidence 6777776554 233332 2 56666666543322221110 111235665 588999987665
Q ss_pred cEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeE
Q 042133 228 CVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDI 277 (299)
Q Consensus 228 ~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~ 277 (299)
.|.++|++...-..+ ... . .....|. .+|.|+++......+
T Consensus 269 -~I~~~d~dG~~~~~~~~~~--~------~~P~giav~~~~ly~td~~~~~V 311 (386)
T 3v65_B 269 -VIERANLDGSHRKAVISQG--L------PHPFAITVFEDSLYWTDWHTKSI 311 (386)
T ss_dssp -EEEEECTTSCSCEEEECSS--C------SSEEEEEEETTEEEEEETTTTEE
T ss_pred -EEEEEeCCCCeeEEEEECC--C------CCceEEEEECCEEEEeeCCCCeE
Confidence 799999976433322 211 1 1224455 777777776654443
No 101
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=46.54 E-value=47 Score=27.14 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=34.4
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEec
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~ 283 (299)
+|.+||...... .|..+|.+++.-..+..+.. ...|. .+|+|+++........|+.++
T Consensus 42 ~g~lyv~d~~~~-----------~I~~~d~~g~~~~~~~~~~~---------p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 42 DGTIFVTNHEVG-----------EIVSITPDGNQQIHATVEGK---------VSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp TSCEEEEETTTT-----------EEEEECTTCCEEEEEECSSE---------EEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCC-----------eEEEECCCCceEEEEeCCCC---------ceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 688999876554 69999998765444444421 12333 567776655443334455543
No 102
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=46.37 E-value=46 Score=26.72 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=34.6
Q ss_pred CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEe
Q 042133 206 YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMM 282 (299)
Q Consensus 206 ~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l 282 (299)
+|. +||...... .|..+|.+++ +..+..|... ...|. .+|+|.++......+.+|..
T Consensus 38 ~g~~l~~~~~~~~-----------~i~~~~~~~~-~~~~~~~~~~--------~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 38 ARSAVIFSDVRQN-----------RTWAWSDDGQ-LSPEMHPSHH--------QNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp GGTEEEEEEGGGT-----------EEEEEETTSC-EEEEESSCSS--------EEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred CCCEEEEEeCCCC-----------EEEEEECCCC-eEEEECCCCC--------cceeeECCCCcEEEEecCCCeEEEEcC
Confidence 465 899887665 7999999988 6666544321 12233 56666554444455555543
No 103
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=46.06 E-value=1.3e+02 Score=24.97 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=27.3
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEE
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIW 280 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW 280 (299)
.|..+|+.+.+-... +..+.. .-..|. .+|++.+.+...+.+.||
T Consensus 307 ~i~vwd~~~~~~~~~-l~~h~~------~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 307 TINVWDVLKGSRVSI-LFGHEN------RVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp CEEEEETTTCSEEEE-ECCCSS------CEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred cEEEEECCCCceEEE-EECCCC------cEEEEEECCCCCEEEEEcCCCCEEec
Confidence 588899876543221 121211 112344 678877777788899999
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=45.42 E-value=1.2e+02 Score=24.54 Aligned_cols=70 Identities=7% Similarity=-0.044 Sum_probs=36.0
Q ss_pred ceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC-Ccee
Q 042133 115 GLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS-SWRE 187 (299)
Q Consensus 115 GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~-~W~~ 187 (299)
|-+++.. ..+..+.|||..++++..+-... ........+.+.+......++... +..+.+++..++ .|..
T Consensus 71 ~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 71 GNILASC-SYDRKVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp SSCEEEE-ETTSCEEEECCSSSCCCEEEEEC--CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred CCEEEEE-ECCCEEEEEECCCCcceEEEEcc--CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 4443332 34678999998887543221111 011111455565543222233333 678889988775 5743
No 105
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=45.27 E-value=1.3e+02 Score=24.93 Aligned_cols=141 Identities=9% Similarity=0.015 Sum_probs=73.8
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISS 190 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~ 190 (299)
+.+|.++.. .....+.++|..+++....-... ......+.+.+... .++... +..+.+|+..++.-...-.
T Consensus 215 ~~~~~~~~~--~~~g~i~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~ 286 (425)
T 1r5m_A 215 VDDDKFVIP--GPKGAIFVYQITEKTPTGKLIGH----HGPISVLEFNDTNK--LLLSASDDGTLRIWHGGNGNSQNCFY 286 (425)
T ss_dssp EETTEEEEE--CGGGCEEEEETTCSSCSEEECCC----SSCEEEEEEETTTT--EEEEEETTSCEEEECSSSBSCSEEEC
T ss_pred cCCCEEEEE--cCCCeEEEEEcCCCceeeeeccC----CCceEEEEECCCCC--EEEEEcCCCEEEEEECCCCccceEec
Confidence 345665555 55778999998876543211111 11125566666433 233333 6788888887643221111
Q ss_pred CCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--ECC
Q 042133 191 VPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 191 ~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
.... .-..+.+ +| ....+..+. .|..+|+.+.+.... ..+.. .-..+. .+|
T Consensus 287 ~~~~----~i~~~~~~~~~-~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~--------~i~~~~~s~~~ 342 (425)
T 1r5m_A 287 GHSQ----SIVSASWVGDD-KVISCSMDG-----------SVRLWSLKQNTLLALSIVDGV--------PIFAGRISQDG 342 (425)
T ss_dssp CCSS----CEEEEEEETTT-EEEEEETTS-----------EEEEEETTTTEEEEEEECTTC--------CEEEEEECTTS
T ss_pred CCCc----cEEEEEECCCC-EEEEEeCCC-----------cEEEEECCCCcEeEecccCCc--------cEEEEEEcCCC
Confidence 0000 0012222 45 333333332 699999987764332 22111 112333 568
Q ss_pred eEEEEEeCCCeEEEEEecc
Q 042133 266 CLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l~~ 284 (299)
++.+++...+.+.||.++.
T Consensus 343 ~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp SEEEEEETTSCEEEEECHH
T ss_pred CEEEEEECCCeEEEEECCC
Confidence 8777777888999999874
No 106
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=45.02 E-value=1.3e+02 Score=24.74 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=30.7
Q ss_pred EEEEEECCCCeeeee-C---CCCCCCCCccccceeEEE--ECCeEEEEEe-C-CCeEEEEEec
Q 042133 229 VIISFDFKKEEFKRT-P---TPDFGSLSYEHERFVMIN--LKGCLAIVIL-T-PEDIEIWMMK 283 (299)
Q Consensus 229 ~il~fD~~~~~~~~i-~---~P~~~~~~~~~~~~~~l~--~~g~L~~~~~-~-~~~~~iW~l~ 283 (299)
.|.+||+.+.++..+ . .|.... ....+. -+|+..++.. . .+.+.||.++
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~------~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQ------GSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCC------CEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred eEEEEEecCCceEEeEEEecCCCCCC------CcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 688999887766544 1 222211 123343 6787665555 5 6899999997
No 107
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=44.83 E-value=1.3e+02 Score=24.61 Aligned_cols=106 Identities=9% Similarity=-0.046 Sum_probs=62.2
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhc--CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCc-eec
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLE--LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSW-REI 188 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~--lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W-~~~ 188 (299)
+|.|+..+ ....++.+.++.|++... +|+. .+..++..+. + ++..+. +..+.||+..+.+= +++
T Consensus 64 ~~~Ly~st-G~~g~v~~iD~~Tgkv~~~~l~~~------~FgeGit~~g--~--~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 64 QGHFFEST-GHQGTLRQLSLESAQPVWMERLGN------IFAEGLASDG--E--RLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp TTEEEEEE-TTTTEEEECCSSCSSCSEEEECTT------CCEEEEEECS--S--CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEc-CCCCEEEEEECCCCcEEeEECCCC------cceeEEEEeC--C--EEEEEEccCCEEEEEECCcCcEEEEE
Confidence 56666663 334569999999988543 3322 2223444443 2 344444 68889999888543 233
Q ss_pred CCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC-eeeeeCCCC
Q 042133 189 SSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE-EFKRTPTPD 247 (299)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~-~~~~i~~P~ 247 (299)
+.. ....++..||...|++.... .|..+|+++. ....|+...
T Consensus 133 ~~~------~eGwGLt~Dg~~L~vSdGs~-----------~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 133 RYS------GEGWGLCYWNGKLVRSDGGT-----------MLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp ECS------SCCCCEEEETTEEEEECSSS-----------EEEEECTTTCCEEEEEECEE
T ss_pred eCC------CceeEEecCCCEEEEECCCC-----------EEEEEcCCCCeEEEEEEeCC
Confidence 221 11247777777666665333 7999999985 445555543
No 108
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=44.60 E-value=1.1e+02 Score=23.97 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=58.0
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|.|+... ....++.++++.++....+-... .....++.+|+..+ +++... ...+.+++.....-+.+.
T Consensus 45 ~~~~~ly~~d-~~~~~I~~~~~~g~~~~~~~~~~----~~~p~~ia~d~~~~--~lyv~d~~~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 45 CVDKVVYWTD-ISEPSIGRASLHGGEPTTIIRQD----LGSPEGIALDHLGR--TIFWTDSQLDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp TTTTEEEEEE-TTTTEEEEEESSSCCCEEEECTT----CCCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cCCCEEEEEE-CCCCEEEEEecCCCCcEEEEECC----CCCccEEEEEecCC--eEEEEECCCCEEEEEEcCCCCEEEEE
Confidence 3456777663 33567888888776533221111 11226777777543 233333 467778877643322221
Q ss_pred CCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee
Q 042133 190 SVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~ 242 (299)
.. . .....++.+ +|.+||...... ...|.+++++......
T Consensus 118 ~~--~--~~~P~~i~vd~~~g~lyv~~~~~~---------~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 118 DT--G--LVNPRGIVTDPVRGNLYWTDWNRD---------NPKIETSHMDGTNRRI 160 (267)
T ss_dssp CS--S--CSSEEEEEEETTTTEEEEEECCSS---------SCEEEEEETTSCCCEE
T ss_pred EC--C--CCCccEEEEeeCCCEEEEEECCCC---------CcEEEEEecCCCCcEE
Confidence 11 0 011234555 588999875421 1258888887654433
No 109
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=44.01 E-value=1.4e+02 Score=24.93 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=31.6
Q ss_pred EEEEEECCCCee--eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEF--KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~--~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.|..+|+.+.+. ..+...... .-..+. .+|++.+.+...+.+.||.+.+
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINEGT-------PINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEEEETTCTTSCSEEEEESTTS-------CEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred eEEEEEcCCCcCchhhhhccCCC-------CceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 699999987643 223221111 113344 7888777666889999999876
No 110
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=42.73 E-value=67 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=20.7
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP 244 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~ 244 (299)
+|.+||...... .|..+|+++.++..+.
T Consensus 55 ~g~l~~~~~~~~-----------~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 55 QGQLFLLDVFEG-----------NIFKINPETKEIKRPF 82 (333)
T ss_dssp TSCEEEEETTTC-----------EEEEECTTTCCEEEEE
T ss_pred CCCEEEEECCCC-----------EEEEEeCCCCcEEEEe
Confidence 578888765544 6999999988776653
No 111
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=41.73 E-value=1.3e+02 Score=23.68 Aligned_cols=139 Identities=10% Similarity=-0.039 Sum_probs=72.2
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|-+.+.. .....++++||. ++....+... ......++.+|+... +.... ...+.+|+. ++......
T Consensus 112 ~~~g~l~v~~-~~~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~---l~v~~~~~~~i~~~~~-~g~~~~~~ 182 (300)
T 2qc5_A 112 GLNGDIWFTQ-LNGDRIGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNA---LWFTENQNNSIGRITN-TGKLEEYP 182 (300)
T ss_dssp CSTTCEEEEE-TTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSS---EEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CCCCCEEEEc-cCCCeEEEECCC-CCEEEccCCC---CCCCceeEEECCCCC---EEEEecCCCeEEEECC-CCcEEEee
Confidence 3466666652 335678888887 5554332111 111225666666432 33332 356777777 56555432
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECC
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
.. .. .....++.+ +|.+|+...... .|..||. +.++..+.+|.... ....|. .+|
T Consensus 183 ~~-~~--~~~~~~i~~d~~g~l~v~~~~~~-----------~i~~~~~-~g~~~~~~~~~~~~------~~~~i~~d~~g 241 (300)
T 2qc5_A 183 LP-TN--AAAPVGITSGNDGALWFVEIMGN-----------KIGRITT-TGEISEYDIPTPNA------RPHAITAGKNS 241 (300)
T ss_dssp CS-ST--TCCEEEEEECTTSSEEEEETTTT-----------EEEEECT-TCCEEEEECSSTTC------CEEEEEECSTT
T ss_pred CC-CC--CCCcceEEECCCCCEEEEccCCC-----------EEEEEcC-CCcEEEEECCCCCC------CceEEEECCCC
Confidence 21 11 011124445 477777655443 6999999 66666665553321 122333 567
Q ss_pred eEEEEEeCCCeEEEE
Q 042133 266 CLAIVILTPEDIEIW 280 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW 280 (299)
+|.++....+.+.++
T Consensus 242 ~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 242 EIWFTEWGANQIGRI 256 (300)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred CEEEeccCCCeEEEE
Confidence 777666544444443
No 112
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=41.24 E-value=2.2e+02 Score=26.30 Aligned_cols=111 Identities=9% Similarity=-0.091 Sum_probs=60.5
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|.|+... ....++..+++-.+....+-... .....++++|...+ +++... ...+++++.....=+.+.
T Consensus 46 ~~~~~lywtD-~~~~~I~r~~~~g~~~~~v~~~g----~~~P~GlAvD~~~~--~LY~tD~~~~~I~v~~~dG~~~~~l~ 118 (628)
T 4a0p_A 46 VTDNRIYWTD-ISLKTISRAFMNGSALEHVVEFG----LDYPEGMAVDWLGK--NLYWADTGTNRIEVSKLDGQHRQVLV 118 (628)
T ss_dssp TTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTT--EEEEEETTTTEEEEEETTSTTCEEEE
T ss_pred CCCCEEEEEE-CCCCeEEEEECCCCCcEEEEeCC----CCCcceEEEEeCCC--EEEEEECCCCEEEEEecCCCcEEEEE
Confidence 4467777774 23567777777654433322211 11125777887654 344444 467888887644322222
Q ss_pred CCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee
Q 042133 190 SVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT 243 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i 243 (299)
.. ......++.+ +|.+||...... ..|..+|++......+
T Consensus 119 ~~----~l~~P~~iavdp~~G~lY~tD~g~~----------~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 119 WK----DLDSPRALALDPAEGFMYWTEWGGK----------PKIDRAAMDGSERTTL 161 (628)
T ss_dssp CS----SCCCEEEEEEETTTTEEEEEECSSS----------CEEEEEETTSCSCEEE
T ss_pred eC----CCCCcccEEEccCCCeEEEeCCCCC----------CEEEEEeCCCCceEEE
Confidence 11 0111235555 489999875422 3688888876554443
No 113
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=40.82 E-value=1.3e+02 Score=28.27 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=39.8
Q ss_pred EEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCCCce-EECCeeEEeecCCCccCccCCCCccEE
Q 042133 154 YAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMSNGV-SAYGDMHWADDDHFSFGQRKGVDNCVI 230 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v-~~~G~~yw~~~~~~~~~~~~~~~~~~i 230 (299)
.++.+|+..+. |++.. ...+++|+.....-+.+..... ......++ ...+.+||...... .|
T Consensus 543 nGlavd~~~~~--LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~~~~P~glavd~~~lywtd~~~~-----------~V 607 (699)
T 1n7d_A 543 NGITLDLLSGR--LYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVFEDKVFWTDIINE-----------AI 607 (699)
T ss_dssp CCEEECTTTCC--EEEEETTTTEEEEECSSSSCCEEECCCSS--SCSSCCCCEEETTEEEEECSTTT-----------CE
T ss_pred cEEEEeccCCE--EEEEecCCCeEEEEccCCCceEEEEecCC--cCCCceEeEEECCEEEEEeCCCC-----------eE
Confidence 56677765443 33333 4677888876433333322111 11111233 34578999986654 69
Q ss_pred EEEECCCCee
Q 042133 231 ISFDFKKEEF 240 (299)
Q Consensus 231 l~fD~~~~~~ 240 (299)
.++|..+.+.
T Consensus 608 ~~~d~~~G~~ 617 (699)
T 1n7d_A 608 FSANRLTGSD 617 (699)
T ss_dssp EEEETTTEEE
T ss_pred EEEEccCCCc
Confidence 9999876543
No 114
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=40.45 E-value=1.5e+02 Score=24.24 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=51.4
Q ss_pred cccEEEEcccchhhhcC-CCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCC----CCceecCCCCCcccc
Q 042133 125 VGKAYLCNPLRKEVLEL-PQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGT----SSWREISSVPPEDLD 197 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~l-P~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~----~~W~~~~~~~~~~~~ 197 (299)
...+.+.++.+++...+ |.. ....++.+|+..+ +++... ...+..++... ..-..+-.. ..
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~------~~p~g~~~d~~~~--~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~----~~ 76 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNL------RNVVALDTEVASN--RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----DI 76 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSC------SSEEEEEEETTTT--EEEEEETTTTEEEEEEC--------CEEEECS----SC
T ss_pred CCeEEEEECCCcceEehhcCC------CceEEEEEEeCCC--EEEEEECCCCcEEEEECCCCCCCcccEEEEeC----CC
Confidence 45667777766654432 221 1226788887654 344444 46777777765 122221110 01
Q ss_pred CCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee
Q 042133 198 NMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 198 ~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~ 242 (299)
....++.+ +|.+||...... .|.++|++......
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~-----------~I~~~~~~g~~~~~ 113 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLG-----------TVSVADTKGVKRKT 113 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTT-----------EEEEEETTSSSEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCC-----------EEEEEeCCCCceEE
Confidence 12235554 589999977654 79999998764433
No 115
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=40.28 E-value=1.7e+02 Score=24.78 Aligned_cols=133 Identities=10% Similarity=0.096 Sum_probs=67.8
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
..+..+.|||..|++....-... ......+.+++.. . .++... +..+.+|+..++.- +.....+. ..-.
T Consensus 127 s~Dg~i~vwd~~~~~~~~~l~~h----~~~V~~v~~~~~~-~-~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~--~~V~ 196 (410)
T 1vyh_C 127 SEDATIKVWDYETGDFERTLKGH----TDSVQDISFDHSG-K-LLASCSADMTIKLWDFQGFEC--IRTMHGHD--HNVS 196 (410)
T ss_dssp ESSSCEEEEETTTCCCCEEECCC----SSCEEEEEECTTS-S-EEEEEETTSCCCEEETTSSCE--EECCCCCS--SCEE
T ss_pred eCCCeEEEEECCCCcEEEEEecc----CCcEEEEEEcCCC-C-EEEEEeCCCeEEEEeCCCCce--eEEEcCCC--CCEE
Confidence 34678999999887654211111 1112455665543 2 232222 67888888766431 11110000 0001
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee-eCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCe
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPED 276 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~ 276 (299)
.+.+ +|.....+..+ ..|..+|+.+.+... +.-... .-..+. .+|++.+.+...+.
T Consensus 197 ~v~~~p~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~~h~~--------~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRD-----------KTIKMWEVQTGYCVKTFTGHRE--------WVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp EEEECSSSSEEEEEETT-----------SEEEEEETTTCCEEEEEECCSS--------CEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEeCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEeCCCc--------cEEEEEECCCCCEEEEEcCCCe
Confidence 2222 34433333333 268899998775422 221111 112233 67888877778899
Q ss_pred EEEEEecc
Q 042133 277 IEIWMMKD 284 (299)
Q Consensus 277 ~~iW~l~~ 284 (299)
+.||.+..
T Consensus 258 v~vwd~~~ 265 (410)
T 1vyh_C 258 VRVWVVAT 265 (410)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99998753
No 116
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=39.56 E-value=1.4e+02 Score=23.66 Aligned_cols=143 Identities=8% Similarity=0.015 Sum_probs=71.6
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMS 200 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~ 200 (299)
.....++++||.++ ...+.... ....++.+++... +++.. ...+.+|+..++..+.+............
T Consensus 47 ~~~~~i~~~~~~~~-~~~~~~~~-----~~~~~l~~~~dg~---l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 117 (296)
T 3e5z_A 47 VRQNRTWAWSDDGQ-LSPEMHPS-----HHQNGHCLNKQGH---LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP 117 (296)
T ss_dssp GGGTEEEEEETTSC-EEEEESSC-----SSEEEEEECTTCC---EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred CCCCEEEEEECCCC-eEEEECCC-----CCcceeeECCCCc---EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence 44678899999987 44433211 1225677776432 33333 36788899888877655322111111112
Q ss_pred CceEE--CCeeEEeecCCCc---c---CccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEE
Q 042133 201 NGVSA--YGDMHWADDDHFS---F---GQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIV 270 (299)
Q Consensus 201 ~~v~~--~G~~yw~~~~~~~---~---~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~ 270 (299)
..+.+ +|.+|+....... . ..........|..+|.+ .++..+.-... ....+. .+|++.++
T Consensus 118 ~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--------~~~gi~~s~dg~~lv~ 188 (296)
T 3e5z_A 118 NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV--------KPNGLAFLPSGNLLVS 188 (296)
T ss_dssp CCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS--------SEEEEEECTTSCEEEE
T ss_pred CCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC--------CCccEEECCCCCEEEE
Confidence 23444 5777664321000 0 00000112378899987 55544421111 112233 56776633
Q ss_pred EeCCCeEEEEEec
Q 042133 271 ILTPEDIEIWMMK 283 (299)
Q Consensus 271 ~~~~~~~~iW~l~ 283 (299)
......+.+|.++
T Consensus 189 ~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 189 DTGDNATHRYCLN 201 (296)
T ss_dssp ETTTTEEEEEEEC
T ss_pred eCCCCeEEEEEEC
Confidence 3366777777776
No 117
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=38.90 E-value=2.5e+02 Score=26.34 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=54.1
Q ss_pred ccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCCCCccc-cCCCCceE
Q 042133 126 GKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDL-DNMSNGVS 204 (299)
Q Consensus 126 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~~~~~~-~~~~~~v~ 204 (299)
..++++||.|+++..++... ........+..|... ++.......+..|+..++.|+.......... ...-..++
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~--~~~~~v~~i~~d~~g---~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEK--NELLDVRVFYEDKNK---KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp EEEEEECSSSCEEEECCSTT--TCCCCEEEEEECTTS---EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred CCEEEEcCCCCcEEEeccCC--CCCCeEEEEEECCCC---CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence 45677777777766654321 111111334444321 1222114567888888888876543210000 01112333
Q ss_pred E--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCC
Q 042133 205 A--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPD 247 (299)
Q Consensus 205 ~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~ 247 (299)
. +|.+ |++..+. .|..||.+++++..+..+.
T Consensus 502 ~d~~g~l-Wigt~~~-----------Gl~~~~~~~~~~~~~~~~~ 534 (781)
T 3v9f_A 502 QDSEGRF-WIGTFGG-----------GVGIYTPDMQLVRKFNQYE 534 (781)
T ss_dssp ECTTCCE-EEEESSS-----------CEEEECTTCCEEEEECTTT
T ss_pred EcCCCCE-EEEEcCC-----------CEEEEeCCCCeEEEccCCC
Confidence 3 3554 5544422 4899999999988875443
No 118
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=38.80 E-value=1.8e+02 Score=24.74 Aligned_cols=132 Identities=7% Similarity=0.011 Sum_probs=69.9
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCce-ecCCCCCccccCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWR-EISSVPPEDLDNMS 200 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~-~~~~~~~~~~~~~~ 200 (299)
..+..+.|||..+++....-... ......+.+++... + ++... +..+.+|+..++.-. ..... . ..-
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~-~-l~sg~~dg~i~vwd~~~~~~~~~~~~h-~----~~v 355 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGH----TDRIYSTIYDHERK-R-CISASMDTTIRIWDLENGELMYTLQGH-T----ALV 355 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEEETTTT-E-EEEEETTSCEEEEETTTTEEEEEECCC-S----SCE
T ss_pred eCCCeEEEEECCCCcEEEEecCC----CCCEEEEEEcCCCC-E-EEEEeCCCcEEEEECCCCcEEEEEeCC-C----CcE
Confidence 34678999998877654221111 11125566666432 2 33333 678999998875421 11110 0 011
Q ss_pred CceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEE
Q 042133 201 NGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEI 279 (299)
Q Consensus 201 ~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~i 279 (299)
..+.++|.....+..+. .|..+|+.+.+-... .+.... ...... .+|++.+++. .+.+.|
T Consensus 356 ~~~~~~~~~l~s~s~dg-----------~v~vwd~~~~~~~~~-~~~~~~------~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADG-----------SIRGWDANDYSRKFS-YHHTNL------SAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp EEEEECSSEEEEEETTS-----------EEEEEETTTCCEEEE-EECTTC------CCEEEEEECSSEEEEEE-TTEEEE
T ss_pred EEEEEcCCEEEEEeCCC-----------cEEEEECCCCceeee-ecCCCC------ccEEEEEeCCCEEEEec-CCeEEE
Confidence 24555665444444333 699999987643222 111111 112223 7777766666 678999
Q ss_pred EEecc
Q 042133 280 WMMKD 284 (299)
Q Consensus 280 W~l~~ 284 (299)
|.++.
T Consensus 417 wd~~~ 421 (464)
T 3v7d_B 417 YNLRS 421 (464)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98764
No 119
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=38.67 E-value=1.3e+02 Score=23.16 Aligned_cols=134 Identities=10% Similarity=-0.086 Sum_probs=70.1
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCC-CCceecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGT-SSWREISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~-~~W~~~~~~~~~~~~~~~~~v 203 (299)
...++++|+.+++...+.... .....+.+.+... .++...+..+.+++..+ +....+........ -..+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~-----~~v~~~~~spdg~--~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~ 90 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP-----ELFEAPNWSPDGK--YLLLNSEGLLYRLSLAGDPSPEKVDTGFATIC---NNDH 90 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES-----SCCEEEEECTTSS--EEEEEETTEEEEEESSSCCSCEECCCTTCCCB---CSCC
T ss_pred ceeEEEEeCCCCceeeeccCC-----cceEeeEECCCCC--EEEEEcCCeEEEEeCCCCCCceEecccccccc---ccce
Confidence 567899999888766543321 1114555555432 22223367888999888 76665443211000 0122
Q ss_pred EE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEE-EEeCCCeEE
Q 042133 204 SA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAI-VILTPEDIE 278 (299)
Q Consensus 204 ~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~-~~~~~~~~~ 278 (299)
.+ +|.......... .....|..+|..+.+...+..... ...+. .+|+..+ +......+.
T Consensus 91 ~~spdg~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 91 GISPDGALYAISDKVE-------FGKSAIYLLPSTGGTPRLMTKNLP---------SYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp EECTTSSEEEEEECTT-------TSSCEEEEEETTCCCCEECCSSSS---------EEEEEECTTSSEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEEeCC-------CCcceEEEEECCCCceEEeecCCC---------ccceEECCCCCEEEEEECCCCceE
Confidence 22 455333333111 123478888988776554432221 12223 4666554 444667789
Q ss_pred EEEecc
Q 042133 279 IWMMKD 284 (299)
Q Consensus 279 iW~l~~ 284 (299)
||.++.
T Consensus 155 l~~~~~ 160 (297)
T 2ojh_A 155 IYSMDI 160 (297)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 998753
No 120
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=38.65 E-value=1.9e+02 Score=24.78 Aligned_cols=139 Identities=12% Similarity=-0.045 Sum_probs=66.2
Q ss_pred ecceEEeeEeCCcccEEEEcccchh----hhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCce
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKE----VLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWR 186 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~----~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~ 186 (299)
.+|.|++.. ....+++..++..+. ...+... ......++.+|...+ +|++.. ...+++++.....-+
T Consensus 122 ~~~~lywsD-~~~~~I~~~~~~g~~~~~~~~~~~~~----~~~~p~glavD~~~~--~lY~~d~~~~~I~~~~~~g~~~~ 194 (400)
T 3p5b_L 122 ASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISR----DIQAPDGLAVDWIHS--NIYWTDSVLGTVSVADTKGVKRK 194 (400)
T ss_dssp TTTEEEEEE-TTTTEEEEEEC------CCCEEEECS----SCSCEEEEEEETTTT--EEEEEETTTTEEEEECTTTCSEE
T ss_pred ccCceEEEe-cCCCeEEEEEcccCCCCCcceEEEeC----CCCCcccEEEEecCC--ceEEEECCCCeEEEEeCCCCceE
Confidence 456666663 224566666665422 1111110 111226788887554 344443 457777777655443
Q ss_pred ecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-
Q 042133 187 EISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN- 262 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~- 262 (299)
.+... ......++.+ +|.+||...... ..|..+|++...-..+-. ..... .....+-
T Consensus 195 ~l~~~----~~~~P~~iavdp~~g~ly~td~~~~----------~~I~~~~~dG~~~~~~~~-~~l~~----P~glavd~ 255 (400)
T 3p5b_L 195 TLFRE----NGSKPRAIVVDPVHGFMYWTDWGTP----------AKIKKGGLNGVDIYSLVT-ENIQW----PNGITLDL 255 (400)
T ss_dssp EEEEC----SSCCEEEEEEETTTTEEEEEECSSS----------CCEEEEETTSCSCEEEEC-SSCSC----EEEEEEET
T ss_pred EEEeC----CCCCcceEEEecccCeEEEEeCCCC----------CEEEEEeCCCCccEEEEE-CCCCc----eEEEEEEe
Confidence 33221 0111235555 589999875432 258889987654333311 11110 1112233
Q ss_pred ECCeEEEEEeCCCeE
Q 042133 263 LKGCLAIVILTPEDI 277 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~ 277 (299)
.+|+|+++......+
T Consensus 256 ~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 256 LSGRLYWVDSKLHSI 270 (400)
T ss_dssp TTTEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCEE
Confidence 467777776544433
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=38.32 E-value=1.5e+02 Score=23.55 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.4
Q ss_pred ECCeEEEEEeCCCeEEEEEeccCCCCceeEEEEEe
Q 042133 263 LKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
.+|++.+.+...+.+.||.++.. +.|..+..++
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~~~~ 348 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYS--NEFKCMSVIT 348 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTT--SCEEEEEEEC
T ss_pred CCCCEEEEecCCCcEEEEecCcC--cchhheeehc
Confidence 56877777778899999999852 3688877775
No 122
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=37.56 E-value=2.1e+02 Score=26.54 Aligned_cols=119 Identities=9% Similarity=-0.029 Sum_probs=62.1
Q ss_pred ecceEEeeEeCCcccEEEEcccchhhh--cCCCCCCCC-----CCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC-
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEVL--ELPQATTGG-----SWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS- 183 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~~--~lP~~~~~~-----~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~- 183 (299)
.+|.|++. .....++-.|+.||+.+ .-+...... ......+..++. -+|+... +..+..++..||
T Consensus 76 ~~g~vyv~--~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 76 VDGIMYVS--ASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK----GKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp ETTEEEEE--CGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET----TEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEE--CCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEEC----CEEEEEcCCCEEEEEECCCCC
Confidence 47778777 54678889999998743 222211000 000001122221 1333333 456777777665
Q ss_pred -CceecCC-CCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC--eeeee
Q 042133 184 -SWREISS-VPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE--EFKRT 243 (299)
Q Consensus 184 -~W~~~~~-~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~--~~~~i 243 (299)
.|+.-.. ............+..+|.+|......+ ......|.+||.++. .|+.-
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~------~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------YGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT------TCCBCEEEEEETTTCCEEEEEE
T ss_pred EEeeecCCcCcCcCcccccCcEEECCEEEEEecccc------cCCCCEEEEEECCCCcEEEEec
Confidence 4876433 111111223457778999988665321 011247999999876 45443
No 123
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=37.33 E-value=1.7e+02 Score=24.08 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=69.8
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCc
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNG 202 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~ 202 (299)
.+..+.+||..+++....-... ......+.+.+....-.++... +..+.+++.+++.-...-..... .-.+
T Consensus 174 ~D~~v~lwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~----~v~~ 245 (354)
T 2pbi_B 174 GDGTCALWDVESGQLLQSFHGH----GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES----DVNS 245 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECC----SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEE
T ss_pred CCCcEEEEeCCCCeEEEEEcCC----CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----CeEE
Confidence 3678899998887643211100 1111344454443222333333 68899999887653221110000 0012
Q ss_pred eEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeE
Q 042133 203 VSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDI 277 (299)
Q Consensus 203 v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~ 277 (299)
+.+ +|.....+..+. .|-.+|+.+.+-..+ ...... .....+. .+|++.+++...+.+
T Consensus 246 v~~~p~~~~l~s~s~D~-----------~v~lwd~~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~~g~~d~~i 308 (354)
T 2pbi_B 246 VRYYPSGDAFASGSDDA-----------TCRLYDLRADREVAIYSKESII------FGASSVDFSLSGRLLFAGYNDYTI 308 (354)
T ss_dssp EEECTTSSEEEEEETTS-----------CEEEEETTTTEEEEEECCTTCC------SCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEeCCCCEEEEEeCCC-----------eEEEEECCCCcEEEEEcCCCcc------cceeEEEEeCCCCEEEEEECCCcE
Confidence 222 344433333332 588899987654322 222111 1112333 678888888888999
Q ss_pred EEEEecc
Q 042133 278 EIWMMKD 284 (299)
Q Consensus 278 ~iW~l~~ 284 (299)
.||.+..
T Consensus 309 ~vwd~~~ 315 (354)
T 2pbi_B 309 NVWDVLK 315 (354)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9998753
No 124
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=37.16 E-value=77 Score=26.31 Aligned_cols=63 Identities=17% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEEec
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~l~ 283 (299)
+|.+||...... .|..+|+++.............. .....+- .+|+|+++......+.+..++
T Consensus 46 ~~~lyw~D~~~~-----------~I~r~~~~g~~~~~~~~~~~l~~----p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 46 HGLIYWSDVSEE-----------AIKRTEFNKTESVQNVVVSGLLS----PDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp GTEEEEEETTTT-----------EEEEEETTSSSCCCEEEEECCSC----CCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEECCCC-----------cEEEEEccCCCceEEEEcCCCCC----ccEEEEEcCCCeEEEEECCCCEEEEEECC
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=37.00 E-value=2.3e+02 Score=28.16 Aligned_cols=130 Identities=8% Similarity=-0.004 Sum_probs=66.5
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCcee-cCCCCCccccCCCC
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWRE-ISSVPPEDLDNMSN 201 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~ 201 (299)
.+..+.|||..+++...+.... .....+.+.+. . +++... +..+.+|+..++.-.. ...... .-.
T Consensus 1023 ~dg~i~vwd~~~~~~~~~~~~~-----~~v~~~~~~~~--~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~-----~v~ 1089 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYVFLQAHQ-----ETVKDFRLLQD--S-RLLSWSFDGTVKVWNVITGRIERDFTCHQG-----TVL 1089 (1249)
T ss_dssp SSSBEEEEETTTTEEECCBCCS-----SCEEEEEECSS--S-EEEEEESSSEEEEEETTTTCCCEEEECCSS-----CCC
T ss_pred CCCEEEEEECCCCceEEEecCC-----CcEEEEEEcCC--C-cEEEEECCCcEEEEECCCCceeEEEcccCC-----cEE
Confidence 3567888888888766433211 11133444432 2 344444 6788899887764321 111000 001
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeE
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDI 277 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~ 277 (299)
.+.+ +|.....+..+. .|..+|+.+.+... .+..+. ..-..+. .+|++.+++...+.+
T Consensus 1090 ~~~~s~d~~~l~s~s~d~-----------~v~iwd~~~~~~~~-~l~~h~------~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSADK-----------TAKIWSFDLLSPLH-ELKGHN------GCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp CEEECSSSSSCEEECCSS-----------CCCEECSSSSSCSB-CCCCCS------SCEEEEEECSSSSEEEEEETTSCC
T ss_pred EEEECCCCCEEEEEcCCC-----------cEEEEECCCcceee-eeccCC------CcEEEEEECCCCCEEEEEeCCCEE
Confidence 1222 444333333332 47777877654211 111111 1112333 688887777788889
Q ss_pred EEEEecc
Q 042133 278 EIWMMKD 284 (299)
Q Consensus 278 ~iW~l~~ 284 (299)
.||.++.
T Consensus 1152 ~vwd~~~ 1158 (1249)
T 3sfz_A 1152 RIWNVSD 1158 (1249)
T ss_dssp CEEESSS
T ss_pred EEEECCC
Confidence 9999874
No 126
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=36.76 E-value=1.7e+02 Score=23.86 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=71.4
Q ss_pred eeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--C-ceEEEEEcCCCCcee
Q 042133 111 HSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--G-KRSEIYTLGTSSWRE 187 (299)
Q Consensus 111 ~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~-~~~~vyss~~~~W~~ 187 (299)
+..+|-|++.. ....++.++++..+....+-... .....++.+|+..+ +++... . ..+++++.....-+.
T Consensus 85 d~~~~~ly~~d-~~~~~I~~~~~~g~~~~~~~~~~----~~~P~~iavdp~~g--~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 85 DWIHSNIYWTD-SVLGTVSVADTKGVKRKTLFREN----GSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp ETTTTEEEEEE-TTTTEEEEEETTSSSEEEEEECT----TCCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred eecCCeEEEEE-CCCCEEEEEeCCCCceEEEEECC----CCCcceEEeCCCCC--EEEEEccCCCCeEEEEcCCCCCeEE
Confidence 33456666653 33567788887654433221111 11225777777554 233332 2 456666654322222
Q ss_pred cCCCCCccccCCCCceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCccccceeEEE-
Q 042133 188 ISSVPPEDLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN- 262 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~- 262 (299)
+... ......++.++ |.+||...... .|.++|++......+ ..+... .....|.
T Consensus 158 ~~~~----~~~~P~gla~d~~~~~lY~~D~~~~-----------~I~~~d~dg~~~~~~~~~~~~~------~~P~giav 216 (316)
T 1ijq_A 158 LVTE----NIQWPNGITLDLLSGRLYWVDSKLH-----------SISSIDVNGGNRKTILEDEKRL------AHPFSLAV 216 (316)
T ss_dssp EECS----SCSCEEEEEEETTTTEEEEEETTTT-----------EEEEEETTSCSCEEEEECTTTT------SSEEEEEE
T ss_pred EEEC----CCCCceEEEEeccCCEEEEEECCCC-----------eEEEEecCCCceEEEeecCCcc------CCcEEEEE
Confidence 2111 01112366664 78999987665 799999986544333 322111 1224455
Q ss_pred ECCeEEEEEeCCCeEE
Q 042133 263 LKGCLAIVILTPEDIE 278 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~~ 278 (299)
.+|.|+++......+.
T Consensus 217 ~~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 217 FEDKVFWTDIINEAIF 232 (316)
T ss_dssp ETTEEEEEETTTTEEE
T ss_pred ECCEEEEEECCCCeEE
Confidence 6788777765544443
No 127
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=36.48 E-value=1.4e+02 Score=24.36 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=23.0
Q ss_pred CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCC
Q 042133 207 GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTP 246 (299)
Q Consensus 207 G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P 246 (299)
|.+||....+. .|..+|.++.+...+..|
T Consensus 61 ~~l~~~d~~~~-----------~i~~~d~~~~~~~~~~~~ 89 (326)
T 2ghs_A 61 GTAWWFNILER-----------ELHELHLASGRKTVHALP 89 (326)
T ss_dssp TEEEEEEGGGT-----------EEEEEETTTTEEEEEECS
T ss_pred CEEEEEECCCC-----------EEEEEECCCCcEEEEECC
Confidence 78999877654 799999999887766655
No 128
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=36.26 E-value=1.5e+02 Score=23.11 Aligned_cols=139 Identities=10% Similarity=-0.011 Sum_probs=74.4
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~ 189 (299)
..+|-+.+.. .....++++++ +++...++... ......++.+|+.. . +.... ...+.+|+. ++......
T Consensus 149 ~~~g~l~v~~-~~~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g-~--l~v~~~~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 149 GSDNALWFTE-NQNNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDD-A--LWFVEIIGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp CTTSCEEEEE-TTTTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTS-S--EEEEETTTTEEEEECT-TCCEEEEE
T ss_pred cCCCCEEEEe-CCCCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCC-C--EEEEccCCceEEEECC-CCcEEEEE
Confidence 4456665552 33567888898 77765532211 11122566777653 2 33332 457888888 76665432
Q ss_pred CCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECCe
Q 042133 190 SVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKGC 266 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g~ 266 (299)
.... .....++.+ +|.+|+...... .|..||. +.++..+.+|.... ....+. .+|.
T Consensus 220 ~~~~---~~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~d~-~g~~~~~~~~~~~~------~~~~i~~~~g~ 278 (299)
T 2z2n_A 220 IPTP---NARPHAITAGAGIDLWFTEWGAN-----------KIGRLTS-NNIIEEYPIQIKSA------EPHGICFDGET 278 (299)
T ss_dssp CSST---TCCEEEEEECSTTCEEEEETTTT-----------EEEEEET-TTEEEEEECSSSSC------CEEEEEECSSC
T ss_pred CCCC---CCCceeEEECCCCCEEEeccCCc-----------eEEEECC-CCceEEEeCCCCCC------ccceEEecCCC
Confidence 2100 011124555 577766654433 6999999 56777776664322 122333 6788
Q ss_pred EEEEEeCCCeEEEEE
Q 042133 267 LAIVILTPEDIEIWM 281 (299)
Q Consensus 267 L~~~~~~~~~~~iW~ 281 (299)
|.+... .+.+....
T Consensus 279 l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 279 IWFAME-CDKIGKLT 292 (299)
T ss_dssp EEEEET-TTEEEEEE
T ss_pred EEEEec-CCcEEEEE
Confidence 887765 33443333
No 129
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=36.18 E-value=1.7e+02 Score=23.68 Aligned_cols=108 Identities=12% Similarity=0.002 Sum_probs=64.5
Q ss_pred cceEEeeEeC-CcccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCc-eec
Q 042133 114 YGLFCFHTRG-GVGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSW-REI 188 (299)
Q Consensus 114 ~GLl~~~~~~-~~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W-~~~ 188 (299)
+|.|+..+.. +.+.+.+.++.|++.. .++..+ ..+..++..+.. ++..+. +..+.||+..+..= +++
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g~----~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----RYFGEGISDWKD----KIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----TCCEEEEEEETT----EEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----ccceeEEEEeCC----EEEEEEeeCCEEEEEECccCcEEEEE
Confidence 6766666321 2468999999999854 333221 222244555432 555555 68899999988553 233
Q ss_pred CCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC-eeeeeCCC
Q 042133 189 SSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE-EFKRTPTP 246 (299)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~-~~~~i~~P 246 (299)
+... ...++..||...|++.... .|..+|+++. ....|+..
T Consensus 124 ~~~~------eG~glt~dg~~L~~SdGs~-----------~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 124 NYDG------EGWGLTHNDQYLIMSDGTP-----------VLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp ECSS------CCCCEEECSSCEEECCSSS-----------EEEEECTTTCSEEEEEECE
T ss_pred ECCC------CceEEecCCCEEEEECCCC-----------eEEEEcCCCCeEEEEEEec
Confidence 2211 2247777887666665433 6999999974 44556654
No 130
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=35.83 E-value=2.6e+02 Score=25.67 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred EeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecC
Q 042133 110 SHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~ 189 (299)
.++.+|.|++.. .....++..++-.+....+-... .....++++|...+.--+.-.....+++.+.....-+.+.
T Consensus 356 ~d~~~~~ly~sD-~~~~~I~r~~~~g~~~~~v~~~~----~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~ 430 (619)
T 3s94_A 356 YDPVEGYIYWTD-DEVRAIRRSFIDGSGSQFVVTAQ----IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI 430 (619)
T ss_dssp EETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEcCCCeEEEEe-CCCCeEEEEEcCCCccEEEEECC----CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE
Q ss_pred CCCCccccCCCCceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-ECC
Q 042133 190 SVPPEDLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-LKG 265 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~~g 265 (299)
.. ......++.++ |.+||...... ..|..++++...-..+---.-.. .....|- .+|
T Consensus 431 ~~----~l~~P~~iavdp~~G~ly~tD~g~~----------~~I~r~~~dG~~~~~l~~~~l~~-----P~GlalD~~~~ 491 (619)
T 3s94_A 431 SE----DLEEPRAIVLDPMVGYMYWTDWGEI----------PKIERAALDGSDRVVLVNTSLGW-----PNGLALDYDEG 491 (619)
T ss_dssp CT----TCCSEEEEEEETTTTEEEEEECSSS----------CEEEEEETTSCSCEEEECSSCSC-----EEEEEEETTTT
T ss_pred EC----CCCCeeeEEEEcCCCcEEEecCCCC----------CEEEEEccCCCccEEEEeCCCCC-----CeeeEEcccCC
Q ss_pred eEEEEEeCCCeEEEEEec
Q 042133 266 CLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l~ 283 (299)
+|+++......+....++
T Consensus 492 ~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 492 KIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp EEEEEETTTTEEEEEESS
T ss_pred EEEEEECCCCEEEEEecC
No 131
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=35.81 E-value=1.8e+02 Score=23.74 Aligned_cols=133 Identities=11% Similarity=0.106 Sum_probs=68.5
Q ss_pred CcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCcee-cCCCCCccccCCCC
Q 042133 124 GVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWRE-ISSVPPEDLDNMSN 201 (299)
Q Consensus 124 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~ 201 (299)
.+..+.|||..+++....-... ......+.+.+.. . .++... +..+.+++..++.=.. ....... -.
T Consensus 162 ~d~~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~-~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~-----v~ 230 (340)
T 1got_B 162 GDTTCALWDIETGQQTTTFTGH----TGDVMSLSLAPDT-R-LFVSGACDASAKLWDVREGMCRQTFTGHESD-----IN 230 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTS-S-EEEEEETTSCEEEEETTTCSEEEEECCCSSC-----EE
T ss_pred CCCcEEEEECCCCcEEEEEcCC----CCceEEEEECCCC-C-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCC-----EE
Confidence 3667889998887643211111 1112455555533 2 222222 6788899887753211 1110000 01
Q ss_pred ceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCe
Q 042133 202 GVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPED 276 (299)
Q Consensus 202 ~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~ 276 (299)
.+.+ +|.....+..+. .|..+|+.+.+-. .+..+.... .-..+. .+|++.+++...+.
T Consensus 231 ~v~~~p~~~~l~s~s~d~-----------~v~iwd~~~~~~~~~~~~~~~~~------~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 231 AICFFPNGNAFATGSDDA-----------TCRLFDLRADQELMTYSHDNIIC------GITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp EEEECTTSSEEEEEETTS-----------CEEEEETTTTEEEEEECCTTCCS------CEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCCEEEEEcCCC-----------cEEEEECCCCcEEEEEccCCccc------ceEEEEECCCCCEEEEECCCCe
Confidence 2222 344433333332 5889999876542 223222111 112333 67888888888899
Q ss_pred EEEEEecc
Q 042133 277 IEIWMMKD 284 (299)
Q Consensus 277 ~~iW~l~~ 284 (299)
+.||.+..
T Consensus 294 i~vwd~~~ 301 (340)
T 1got_B 294 CNVWDALK 301 (340)
T ss_dssp EEEEETTT
T ss_pred EEEEEccc
Confidence 99998753
No 132
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=35.43 E-value=2.2e+02 Score=24.64 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=74.6
Q ss_pred ecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe----C--ceEEEEEcCCCCce
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF----G--KRSEIYTLGTSSWR 186 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~----~--~~~~vyss~~~~W~ 186 (299)
.+|.|++.. ...++.+.++.+++...+-.. .....++.+|+..+ .++... . ..+.+++. .+.|.
T Consensus 148 ~~g~Lyv~d--~~~~I~~id~~~~~v~~~~~~-----~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~~-~g~~~ 217 (430)
T 3tc9_A 148 NHNHLYLVG--EQHPTRLIDFEKEYVSTVYSG-----LSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILTR-ESGFK 217 (430)
T ss_dssp EEEEEEEEE--BTEEEEEEETTTTEEEEEECC-----CSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred CCCeEEEEe--CCCcEEEEECCCCEEEEEecC-----CCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEeC-CCcee
Confidence 568887773 237888999988776554321 11225666766543 233322 1 12333443 33343
Q ss_pred ecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee-eCCCCCCCCCccccceeEEE
Q 042133 187 EISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~ 262 (299)
...... ......++.+ +|.+|+...... .|..||+++..... ...+.... ...|.
T Consensus 218 ~~~~l~---~~~~p~giavdp~~g~lyv~d~~~~-----------~V~~~~~~~~~~~~~~~~~~~~~-------P~gia 276 (430)
T 3tc9_A 218 VITELT---KGQNCNGAETHPINGELYFNSWNAG-----------QVFRYDFTTQETTPLFTIQDSGW-------EFHIQ 276 (430)
T ss_dssp SEEEEE---ECSSCCCEEECTTTCCEEEEETTTT-----------EEEEEETTTTEEEEEEECSSSSC-------CEEEE
T ss_pred eeeeec---cCCCceEEEEeCCCCEEEEEECCCC-----------EEEEEECCCCcEEEEEEcCCCCc-------ceeEE
Confidence 111100 1122345555 688998876654 79999999877633 34443211 12344
Q ss_pred --ECCe-EEEEEeCCCeEEEEEec
Q 042133 263 --LKGC-LAIVILTPEDIEIWMMK 283 (299)
Q Consensus 263 --~~g~-L~~~~~~~~~~~iW~l~ 283 (299)
.+|+ |+++......+..+..+
T Consensus 277 ~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 277 FHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEeCC
Confidence 5666 66666566666665544
No 133
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=35.13 E-value=2.2e+02 Score=24.53 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCccEEEEEECCCC---eeeeeCCCCCCCCCccccceeEEE-E--------CCeEEEEEe-CCCeEEEEEeccCCCCcee
Q 042133 225 VDNCVIISFDFKKE---EFKRTPTPDFGSLSYEHERFVMIN-L--------KGCLAIVIL-TPEDIEIWMMKDYDRKEWV 291 (299)
Q Consensus 225 ~~~~~il~fD~~~~---~~~~i~~P~~~~~~~~~~~~~~l~-~--------~g~L~~~~~-~~~~~~iW~l~~~~~~~W~ 291 (299)
...-+|++||+.++ ....+.+|..... .......|. . ++....+.. ....|-|.-+.. .++|.
T Consensus 120 ~~~pkLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~--~~swR 195 (381)
T 3q6k_A 120 SHRPAIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK--QDSWN 195 (381)
T ss_dssp CCCCEEEEEESSSTTCCEEEEEECCGGGCC--CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT--TEEEE
T ss_pred CCCceEEEEECCCCCceeEEEEECCHHhcc--cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC--CcEEE
Confidence 34568999999997 4567789866543 122233333 2 133333333 566666666653 23676
Q ss_pred EE
Q 042133 292 KE 293 (299)
Q Consensus 292 ~~ 293 (299)
..
T Consensus 196 v~ 197 (381)
T 3q6k_A 196 VT 197 (381)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 134
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=35.11 E-value=1.7e+02 Score=23.35 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=38.2
Q ss_pred ceEEEEEcCCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCe-eeeeCCCC
Q 042133 173 KRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE-FKRTPTPD 247 (299)
Q Consensus 173 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~ 247 (299)
..+.+++..++.=......+... ....-...++.+|-++.... .+.+||.++.+ ...++.|.
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~--fgeGi~~~~~~ly~ltw~~~-----------~v~v~D~~tl~~~~ti~~~~ 105 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPY--FGAGIVAWRDRLIQLTWRNH-----------EGFVYDLATLTPRARFRYPG 105 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESSSS-----------EEEEEETTTTEEEEEEECSS
T ss_pred ceEEEEECCCCCEEEEEeCCCCc--ceeEEEEeCCEEEEEEeeCC-----------EEEEEECCcCcEEEEEeCCC
Confidence 47888999887542221111111 11123445678999987765 89999998864 45666663
No 135
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=34.44 E-value=1.9e+02 Score=23.75 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=59.5
Q ss_pred EEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEE
Q 042133 154 YAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVI 230 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~i 230 (299)
..+.+.+....+-+..-.+..+.+|+..++.....-....+.. .-..+.+ +|.....+..+. .|
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~d~-----------~i 143 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD--AITGMKFNQFNTNQLFVSSIRG-----------AT 143 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC--BEEEEEEETTEEEEEEEEETTT-----------EE
T ss_pred EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC--ceeEEEeCCCCCCEEEEEeCCC-----------EE
Confidence 4445555432332222226788999988876654322100000 0013333 334333333332 68
Q ss_pred EEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEec
Q 042133 231 ISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 231 l~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~ 283 (299)
..+|+.++....+....... ..-..+. .+|++.+++...+.+.+|.++
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWD-----YWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp EEEETTSCEEEEEECCCCSS-----CCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred EEEECCCCceEEEeccCCCC-----CCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 99999987776665443322 1112333 667777777788899999874
No 136
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=34.24 E-value=1.9e+02 Score=23.45 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred ecceEEeeEe-CCcccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCc-ee
Q 042133 113 AYGLFCFHTR-GGVGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSW-RE 187 (299)
Q Consensus 113 ~~GLl~~~~~-~~~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W-~~ 187 (299)
-+|.|+..+. .+.+.+.+.++.|++.. .+|... ..+..++..+. + ++.... +..+.||+..+..= +.
T Consensus 30 ~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----~~fgeGi~~~g---~-~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 30 ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD----SYFGEGLTLLN---E-KLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT----TCCEEEEEEET---T-EEEEEETTCSEEEEEETTTTEEEEE
T ss_pred CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC----CcceEEEEEeC---C-EEEEEEecCCEEEEEECCCCcEEEE
Confidence 3476666531 12578999999999854 333221 12224555553 2 455554 67899999887431 22
Q ss_pred cCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCe-eeeeCC
Q 042133 188 ISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE-FKRTPT 245 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~-~~~i~~ 245 (299)
++. . .....++..||...|++... ..|..+|+++.+ ...|+.
T Consensus 102 i~~---g--~~~g~glt~Dg~~l~vs~gs-----------~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 102 FTH---Q--MKDGWGLATDGKILYGSDGT-----------SILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp EEC---C--SSSCCEEEECSSSEEEECSS-----------SEEEEECTTTCCEEEEEEC
T ss_pred EEC---C--CCCeEEEEECCCEEEEECCC-----------CeEEEEECCCCcEEEEEEE
Confidence 221 1 01124577787755555433 379999999854 445554
No 137
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=34.15 E-value=1.6e+02 Score=26.27 Aligned_cols=146 Identities=12% Similarity=0.009 Sum_probs=71.3
Q ss_pred ceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC----ceEEEEEcCCCCceecCC
Q 042133 115 GLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG----KRSEIYTLGTSSWREISS 190 (299)
Q Consensus 115 GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~----~~~~vyss~~~~W~~~~~ 190 (299)
++++.. .......++|..|++...+...+. ..+.+++.. ++-+....+ ..+.+++..++.++.+..
T Consensus 123 ~~~~~s--~~~~~~~l~d~~~g~~~~l~~~~~-------~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~ 192 (582)
T 3o4h_A 123 AVVFTG--ATEDRVALYALDGGGLRELARLPG-------FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS 192 (582)
T ss_dssp CEEEEE--ECSSCEEEEEEETTEEEEEEEESS-------CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCEEECC
T ss_pred eEEEEe--cCCCCceEEEccCCcEEEeecCCC-------ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCceEeec
Confidence 355554 334555689999988766654331 223333322 221111111 457778888888877653
Q ss_pred CCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeE--EEECCeEE
Q 042133 191 VPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVM--INLKGCLA 268 (299)
Q Consensus 191 ~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~--l~~~g~L~ 268 (299)
...... .....=||...+..... ....|..+|+++.+...+.-............... ..-+|++.
T Consensus 193 ~~~~~~---~~~~SpDG~~l~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 193 GEGSFS---SASISPGMKVTAGLETA---------REARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp SSCEEE---EEEECTTSCEEEEEECS---------SCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred CCCccc---cceECCCCCEEEEccCC---------CeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEE
Confidence 321110 01111256544432221 12468999999887762222111000000000001 22667776
Q ss_pred EEEeCCCeEEEEEe
Q 042133 269 IVILTPEDIEIWMM 282 (299)
Q Consensus 269 ~~~~~~~~~~iW~l 282 (299)
+.....+.+.||.+
T Consensus 261 ~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 261 VVARREGRSAVFID 274 (582)
T ss_dssp EEEEETTEEEEEET
T ss_pred EEEEcCCcEEEEEE
Confidence 66666778889987
No 138
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=33.86 E-value=2.9e+02 Score=25.65 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=61.7
Q ss_pred ecceEEeeEeCCcccEEEEcccchhh--hcCCCCCCCCC-----CcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCC-
Q 042133 113 AYGLFCFHTRGGVGKAYLCNPLRKEV--LELPQATTGGS-----WLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTS- 183 (299)
Q Consensus 113 ~~GLl~~~~~~~~~~~~V~NP~T~~~--~~lP~~~~~~~-----~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~- 183 (299)
.+|.|++. .....++-.|+.||+. +.-+....... .....+..++. -+|+... +..+..++..||
T Consensus 69 ~~g~vyv~--~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 69 VDGVMYTT--GPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK----GKVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp ETTEEEEE--CGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET----TEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEE--cCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC----CEEEEEccCCEEEEEECCCCC
Confidence 46777777 5466788889988873 32222110000 00001112221 1333333 456777777775
Q ss_pred -CceecCC-CCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCe--eeee
Q 042133 184 -SWREISS-VPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEE--FKRT 243 (299)
Q Consensus 184 -~W~~~~~-~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~--~~~i 243 (299)
.|+.-.. .+..........+..+|.+|.-..... ......|.+||.+|.+ |+.-
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~------~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE------FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT------TCCBCEEEEEETTTCCEEEEEE
T ss_pred EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc------cCCCCEEEEEECCCCcEEEEec
Confidence 4876543 211112223457788999988654321 0122479999998764 5543
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=33.42 E-value=1.9e+02 Score=23.29 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=71.8
Q ss_pred ceEEeeEeCCcccEEEEcccchhhh-cCCCCCCCCCC---cc-eEEEeEeCCCCCEEEEEE-e-CceEEEEEcCCCCce-
Q 042133 115 GLFCFHTRGGVGKAYLCNPLRKEVL-ELPQATTGGSW---LD-FYAMGFDGTTSTYKIVRV-F-GKRSEIYTLGTSSWR- 186 (299)
Q Consensus 115 GLl~~~~~~~~~~~~V~NP~T~~~~-~lP~~~~~~~~---~~-~~~l~~d~~~~~ykvv~~-~-~~~~~vyss~~~~W~- 186 (299)
..+++.. .....+.++|+.|++.. .++........ .. ..++.+++..+ +-++.- . +..+.+++..++.=.
T Consensus 101 ~~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 101 QTLWFGN-TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp TEEEEEE-TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEEEETTTTEEEE
T ss_pred CEEEEEe-cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEecCCCceEEEEcCCCCceEE
Confidence 3344442 44578999999998753 33322100100 11 25667777554 222222 1 466888888775321
Q ss_pred ecCCCCCccccCCCCceEE--CCe-eEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCccccceeEEE
Q 042133 187 EISSVPPEDLDNMSNGVSA--YGD-MHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~--~G~-~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~ 262 (299)
.+... .. ...++.+ +|. +|.....+ .|..+|+.+.+.. .+..+..... .....+.
T Consensus 179 ~~~~~--~~---~~~~~~~s~dg~~l~~~~~~~------------~i~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~ 237 (353)
T 3vgz_A 179 AIQNT--GK---MSTGLALDSEGKRLYTTNADG------------ELITIDTADNKILSRKKLLDDGKE----HFFINIS 237 (353)
T ss_dssp EECCC--CT---TCCCCEEETTTTEEEEECTTS------------EEEEEETTTTEEEEEEECCCSSSC----CCEEEEE
T ss_pred EecCC--CC---ccceEEECCCCCEEEEEcCCC------------eEEEEECCCCeEEEEEEcCCCCCC----cccceEE
Confidence 11101 00 0122333 555 44443332 5889999987654 3454332111 1112233
Q ss_pred --ECCe-EEEEEeCCCeEEEEEec
Q 042133 263 --LKGC-LAIVILTPEDIEIWMMK 283 (299)
Q Consensus 263 --~~g~-L~~~~~~~~~~~iW~l~ 283 (299)
.+|+ |++.....+.+.+|.++
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETT
T ss_pred ECCCCCEEEEEeCCCCEEEEEECC
Confidence 4455 44444466788888765
No 140
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=33.25 E-value=2.1e+02 Score=23.77 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=72.4
Q ss_pred eecceEE-eeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCC
Q 042133 112 SAYGLFC-FHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISS 190 (299)
Q Consensus 112 s~~GLl~-~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~ 190 (299)
|-+|-++ +.+...+..+.|||+.+++........ .....+.|.+... .++...+..+.++...++.-.....
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-----~~V~~v~fspdg~--~l~s~s~~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-----GEVKDLHFSTDGK--VVAYITGSSLEVISTVTGSCIARKT 214 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-----SCCCEEEECTTSS--EEEEECSSCEEEEETTTCCEEEEEC
T ss_pred cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-----CceEEEEEccCCc--eEEeccceeEEEEEeccCcceeeee
Confidence 5566443 332123567999999998765433211 1113455555331 1222224556666666554322111
Q ss_pred CCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee---CCCCCCCCCccccceeEEE--ECC
Q 042133 191 VPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT---PTPDFGSLSYEHERFVMIN--LKG 265 (299)
Q Consensus 191 ~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~~~~~~~~~~l~--~~g 265 (299)
...+......-...-+|.....+..+. .....+..+|+........ .+..+.. .-..+. .+|
T Consensus 215 ~~~~~~~v~~v~fspdg~~l~~~s~d~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~V~~~~~Spdg 281 (365)
T 4h5i_A 215 DFDKNWSLSKINFIADDTVLIAASLKK-------GKGIVLTKISIKSGNTSVLRSKQVTNRFK------GITSMDVDMKG 281 (365)
T ss_dssp CCCTTEEEEEEEEEETTEEEEEEEESS-------SCCEEEEEEEEETTEEEEEEEEEEESSCS------CEEEEEECTTS
T ss_pred cCCCCCCEEEEEEcCCCCEEEEEecCC-------cceeEEeecccccceecceeeeeecCCCC------CeEeEEECCCC
Confidence 100000000001122455444433221 2223566677766554433 2222211 112333 788
Q ss_pred eEEEEEeCCCeEEEEEecc
Q 042133 266 CLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 266 ~L~~~~~~~~~~~iW~l~~ 284 (299)
++.+++...+.+.||.++.
T Consensus 282 ~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp CEEEEEETTSCEEEEETTT
T ss_pred CceEEEcCCCEEEEEECCC
Confidence 8887777888999998763
No 141
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=33.03 E-value=54 Score=23.14 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=29.1
Q ss_pred cccEEEEcccch-hhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe
Q 042133 125 VGKAYLCNPLRK-EVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF 171 (299)
Q Consensus 125 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 171 (299)
.-.++++||.|+ .|...-... ..+.+.+|+..+.|+|+.+.
T Consensus 10 rA~V~~~D~~tk~~W~p~g~~~------~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 10 RAHVFQIDPNTKKNWVPTSKHA------VTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEEECTTTSCSEEESCSSC------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCCceEeCCCCc------eEEEEEEcCCCCEEEEEEcc
Confidence 457899999996 896322211 23667789888889998765
No 142
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=32.69 E-value=2.1e+02 Score=23.63 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=23.0
Q ss_pred CCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeee
Q 042133 200 SNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK 241 (299)
Q Consensus 200 ~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~ 241 (299)
..++..+|.+|.....+ .|.+||.++.+..
T Consensus 47 ~~p~v~~~~v~~~~~~g------------~v~a~d~~tG~~~ 76 (376)
T 3q7m_A 47 LHPALADNVVYAADRAG------------LVKALNADDGKEI 76 (376)
T ss_dssp CCCEEETTEEEEECTTS------------EEEEEETTTCCEE
T ss_pred eccEEECCEEEEEcCCC------------eEEEEEccCCcee
Confidence 36788899999877655 4999999876543
No 143
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=32.52 E-value=1.7e+02 Score=23.55 Aligned_cols=63 Identities=6% Similarity=0.005 Sum_probs=0.0
Q ss_pred CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCcccc------ceeEEE--ECCeEEEEEeCCCeEE
Q 042133 207 GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHE------RFVMIN--LKGCLAIVILTPEDIE 278 (299)
Q Consensus 207 G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~------~~~~l~--~~g~L~~~~~~~~~~~ 278 (299)
|.+|.+..... .|+.+|...+..+.+.++.... + ..-.|. .+|.|++++..+ .
T Consensus 185 g~lliLS~~s~-----------~L~~~d~~g~~~~~~~L~~g~~-----~l~~~~~qpEGia~d~~G~lyIvsE~n---~ 245 (255)
T 3qqz_A 185 NTLLVLSHESR-----------ALQEVTLVGEVIGEMSLTKGSR-----GLSHNIKQAEGVAMDASGNIYIVSEPN---R 245 (255)
T ss_dssp TEEEEEETTTT-----------EEEEECTTCCEEEEEECSTTGG-----GCSSCCCSEEEEEECTTCCEEEEETTT---E
T ss_pred CeEEEEECCCC-----------eEEEEcCCCCEEEEEEcCCccC-----CcccccCCCCeeEECCCCCEEEEcCCc---e
Q ss_pred EEEeccCCCC
Q 042133 279 IWMMKDYDRK 288 (299)
Q Consensus 279 iW~l~~~~~~ 288 (299)
+|+.+....+
T Consensus 246 ~y~f~~~~~~ 255 (255)
T 3qqz_A 246 FYRFTPQSSH 255 (255)
T ss_dssp EEEEEC----
T ss_pred EEEEEecCCC
No 144
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=32.49 E-value=3e+02 Score=25.34 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=54.6
Q ss_pred cccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 125 VGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
...+...+..+++.. .+|... .....++.||+..+ +|++.. ...+..++......+.+... . .....
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~----~~~~~~l~~d~~~~--~lywtD~~~~~I~r~~~~g~~~~~v~~~--g--~~~P~ 83 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTG----VKEASALDFDVTDN--RIYWTDISLKTISRAFMNGSALEHVVEF--G--LDYPE 83 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCS----CSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEECS--S--CSCCC
T ss_pred CCcEEEEECCCCCcceEEEcCC----CCceEEEEEECCCC--EEEEEECCCCeEEEEECCCCCcEEEEeC--C--CCCcc
Confidence 445555555554432 233322 12237888887665 455444 45666677665544443321 0 11234
Q ss_pred ceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCCeeee
Q 042133 202 GVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 202 ~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~ 242 (299)
++.+| |.+||...... .|.++|++...-..
T Consensus 84 GlAvD~~~~~LY~tD~~~~-----------~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTN-----------RIEVSKLDGQHRQV 116 (628)
T ss_dssp EEEEETTTTEEEEEETTTT-----------EEEEEETTSTTCEE
T ss_pred eEEEEeCCCEEEEEECCCC-----------EEEEEecCCCcEEE
Confidence 67764 89999877655 79999997654333
No 145
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=31.49 E-value=2e+02 Score=22.90 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=22.9
Q ss_pred ECCeEEEEEeCCCeEEEEEeccCCCCceeEEEEEe
Q 042133 263 LKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKIT 297 (299)
Q Consensus 263 ~~g~L~~~~~~~~~~~iW~l~~~~~~~W~~~~~i~ 297 (299)
.+|++.+++...+.+.||..... +.|..+.+++
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~~--g~w~~~~~~~ 296 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENLE--GKWEPAGEVH 296 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECTT--SCEEEC----
T ss_pred CCCCEEEEEcCCCcEEEEEECCC--CcEEeccccc
Confidence 67887777778889999998742 4799887764
No 146
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=30.29 E-value=2.8e+02 Score=24.40 Aligned_cols=145 Identities=7% Similarity=-0.039 Sum_probs=74.9
Q ss_pred CCcccEEEEcccchhhhc-CCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceecCCCCCccccCCCC
Q 042133 123 GGVGKAYLCNPLRKEVLE-LPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSN 201 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~ 201 (299)
..+..+.+||..+++... +.... ........+.+.+..+++-+..-.+..+.+|+..++.-...-..+.......-.
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRTHH--KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSS--CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred eCCCcEEEEeCCCcceeeeecccC--CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE
Confidence 346778899987766432 22211 000022556666652333222222678999998876542211000000000011
Q ss_pred ceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEE
Q 042133 202 GVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIE 278 (299)
Q Consensus 202 ~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~ 278 (299)
.+.+ +|.....+..+. .|..+|+.+.+. ..+..+..... .....+. .+|+..+++...+.+.
T Consensus 258 ~~~~~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 258 ALSWLDSQKFATVGADA-----------TIRVWDVTTSKCVQKWTLDKQQLG----NQQVGVVATGNGRIISLSLDGTLN 322 (615)
T ss_dssp EEEESSSSEEEEEETTS-----------EEEEEETTTTEEEEEEECCTTCGG----GCEEEEEEEETTEEEEEETTSCEE
T ss_pred EEEEcCCCEEEEEcCCC-----------cEEEEECCCCcEEEEEcCCCCccc----CceeEEEeCCCCeEEEEECCCCEE
Confidence 2223 666555554443 699999997654 33454432111 1223444 5777777777888999
Q ss_pred EEEecc
Q 042133 279 IWMMKD 284 (299)
Q Consensus 279 iW~l~~ 284 (299)
+|.++.
T Consensus 323 ~~d~~~ 328 (615)
T 1pgu_A 323 FYELGH 328 (615)
T ss_dssp EEETTE
T ss_pred EEECCC
Confidence 998764
No 147
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=29.48 E-value=2.3e+02 Score=23.16 Aligned_cols=49 Identities=10% Similarity=-0.128 Sum_probs=31.0
Q ss_pred EEEEEECCCCeeee-eCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccC
Q 042133 229 VIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 229 ~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~ 285 (299)
.|..+|+.+.+... +.-+.. .-..+. .+|++.+.+...+.+.||.++..
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYK--------TVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSS--------CEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEEEEECcCCcceeeeccCCC--------eEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 58999998765432 222211 112333 67787777778889999999754
No 148
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=29.45 E-value=3.3e+02 Score=24.91 Aligned_cols=122 Identities=8% Similarity=0.046 Sum_probs=60.3
Q ss_pred cceEEeeEeCC-cccEEEEcc-cchhh--hcCCCCCCCC-----CCcceEEEeE--eCCCCCEEEEEEe-CceEEEEEcC
Q 042133 114 YGLFCFHTRGG-VGKAYLCNP-LRKEV--LELPQATTGG-----SWLDFYAMGF--DGTTSTYKIVRVF-GKRSEIYTLG 181 (299)
Q Consensus 114 ~GLl~~~~~~~-~~~~~V~NP-~T~~~--~~lP~~~~~~-----~~~~~~~l~~--d~~~~~ykvv~~~-~~~~~vyss~ 181 (299)
+|.|++. .. ...++-.|+ .||+. +.-+...... ......+..+ +.....-+|+... +..+..++..
T Consensus 62 ~g~vyv~--~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIH--TSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEE--CSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEE--eCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 6777777 54 456888888 78763 3322211000 0000122333 1111112244433 4566777776
Q ss_pred CC--CceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCC--eeeee
Q 042133 182 TS--SWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKE--EFKRT 243 (299)
Q Consensus 182 ~~--~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~--~~~~i 243 (299)
|| .|+.-.............++..+|.+|.-....+ + .....|.+||.++. .|+.-
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e-~-----g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE-L-----GVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG-G-----TCCCEEEEEETTTCCEEEEEE
T ss_pred CCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc-c-----CCCCeEEEEECCCCcEEEEEc
Confidence 65 4875432211111223457778999987553210 0 01237999999976 45443
No 149
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=29.39 E-value=2.6e+02 Score=23.69 Aligned_cols=48 Identities=4% Similarity=0.167 Sum_probs=27.7
Q ss_pred EEEEEECCCCe----eeeeCCCCCCCCCccccceeEEE--ECCe-EEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEE----FKRTPTPDFGSLSYEHERFVMIN--LKGC-LAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~----~~~i~~P~~~~~~~~~~~~~~l~--~~g~-L~~~~~~~~~~~iW~l~~ 284 (299)
.|..+|+.+.. ...+.. +. ..-..|. .+|+ +++++...+.+.||-+..
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~--~~------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDA--HT------AEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEEC--CS------SCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEECCCCCCCcceeEeec--CC------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 69999998753 111211 11 1112333 4454 666666888899999875
No 150
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=29.22 E-value=2.1e+02 Score=22.64 Aligned_cols=131 Identities=9% Similarity=0.069 Sum_probs=63.2
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCcee-cCCCCCccccCCCCc
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWRE-ISSVPPEDLDNMSNG 202 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~ 202 (299)
+..+.||+..+++....-... ......+.+.+.. + .++... +..+.+|+..++.-.. +....... ..
T Consensus 44 dg~i~iw~~~~~~~~~~~~~h----~~~v~~~~~~~~~-~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~ 112 (312)
T 4ery_A 44 DKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDS-N-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-----FC 112 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTS-S-EEEEEETTSEEEEEETTTCCEEEEEECCSSCE-----EE
T ss_pred CCeEEEEeCCCcccchhhccC----CCceEEEEEcCCC-C-EEEEECCCCEEEEEECCCCcEEEEEcCCCCCE-----EE
Confidence 556777777666543221111 1112455565543 2 233222 6789999887754211 11000000 01
Q ss_pred eEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEE
Q 042133 203 VSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIE 278 (299)
Q Consensus 203 v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~ 278 (299)
+.+ +|.....+..+ ..|..+|+.+.+.... ++.+.. .-..+. .+|++.+++...+.+.
T Consensus 113 ~~~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~-~~~~~~------~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 113 CNFNPQSNLIVSGSFD-----------ESVRIWDVKTGKCLKT-LPAHSD------PVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp EEECSSSSEEEEEETT-----------SCEEEEETTTCCEEEE-ECCCSS------CEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEcCCCCEEEEEeCC-----------CcEEEEECCCCEEEEE-ecCCCC------cEEEEEEcCCCCEEEEEeCCCcEE
Confidence 111 23332222222 2588999987654222 221111 112333 5778777777888899
Q ss_pred EEEecc
Q 042133 279 IWMMKD 284 (299)
Q Consensus 279 iW~l~~ 284 (299)
||.+..
T Consensus 175 ~wd~~~ 180 (312)
T 4ery_A 175 IWDTAS 180 (312)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 998763
No 151
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=28.99 E-value=2.1e+02 Score=22.40 Aligned_cols=139 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCC
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVP 192 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~ 192 (299)
+.+++.. ..+..+.+|| ..+....+.... ......+.+.+... ++... +..+.+|+..++ +.+....
T Consensus 155 ~~~l~~~--~~d~~i~i~d-~~~~~~~~~~~~----~~~i~~~~~~~~~~---~~~~~~dg~i~i~d~~~~--~~~~~~~ 222 (313)
T 3odt_A 155 ENKFLTA--SADKTIKLWQ-NDKVIKTFSGIH----NDVVRHLAVVDDGH---FISCSNDGLIKLVDMHTG--DVLRTYE 222 (313)
T ss_dssp TTEEEEE--ETTSCEEEEE-TTEEEEEECSSC----SSCEEEEEEEETTE---EEEEETTSEEEEEETTTC--CEEEEEE
T ss_pred CCEEEEE--ECCCCEEEEe-cCceEEEEeccC----cccEEEEEEcCCCe---EEEccCCCeEEEEECCch--hhhhhhh
Q ss_pred CccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEE
Q 042133 193 PEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIV 270 (299)
Q Consensus 193 ~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~ 270 (299)
.+......-...-+|.+.-...++. |..+|+.+.+....-....... ..+. .+|+ .++
T Consensus 223 ~~~~~i~~~~~~~~~~l~~~~~dg~------------v~iwd~~~~~~~~~~~~~~~~i-------~~~~~~~~~~-~~~ 282 (313)
T 3odt_A 223 GHESFVYCIKLLPNGDIVSCGEDRT------------VRIWSKENGSLKQVITLPAISI-------WSVDCMSNGD-IIV 282 (313)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSE------------EEEECTTTCCEEEEEECSSSCE-------EEEEECTTSC-EEE
T ss_pred cCCceEEEEEEecCCCEEEEecCCE------------EEEEECCCCceeEEEeccCceE-------EEEEEccCCC-EEE
Q ss_pred EeCCCeEEEEEecc
Q 042133 271 ILTPEDIEIWMMKD 284 (299)
Q Consensus 271 ~~~~~~~~iW~l~~ 284 (299)
+...+.+.||.++.
T Consensus 283 ~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 283 GSSDNLVRIFSQEK 296 (313)
T ss_dssp EETTSCEEEEESCG
T ss_pred EeCCCcEEEEeCCC
No 152
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=28.50 E-value=85 Score=26.57 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=37.9
Q ss_pred CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEec
Q 042133 206 YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 206 ~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~ 283 (299)
+|.++.....+. .|..+|+.+.+......+..... ....-..+. .+|++.+.....+.+.+|.++
T Consensus 133 ~~~~~~~~~~~~-----------~i~~~d~~~g~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 133 NTRLAIPLLEDE-----------GMDVLDINSGQTVRLSPPEKYKK--KLGFVETISIPEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp SSEEEEEBTTSS-----------SEEEEETTTCCEEEECCCHHHHT--TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred CCeEEEEeCCCC-----------eEEEEECCCCeEeeecCcccccc--cCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence 566666554443 58999999876654322211000 001112233 578877777777889999876
Q ss_pred c
Q 042133 284 D 284 (299)
Q Consensus 284 ~ 284 (299)
.
T Consensus 200 ~ 200 (433)
T 3bws_A 200 T 200 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 153
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=28.28 E-value=2.7e+02 Score=23.45 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=31.0
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccC
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~ 285 (299)
.|..+|+.+.+... .+..+.. .-..|. .+|+..+.+...+.+.||.+.+.
T Consensus 345 ~I~iwd~~~~~~v~-~l~gH~~------~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 345 QLVIWKYPTMAKVA-ELKGHTS------RVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CEEEEETTTCCEEE-EECCCSS------CEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEEECCCCcEEE-EEcCCCC------CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 58888988764321 2222211 112344 57887777778899999998653
No 154
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=28.24 E-value=4.5e+02 Score=26.02 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=73.2
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhc-CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLE-LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~ 189 (299)
+.+|-.+... ..+..+.|||..|++... +.. .......+.+.+.. ++ ++... +..+.|++..++.-...-
T Consensus 624 s~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~-----h~~~v~~~~~s~~~-~~-l~s~~~d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 624 SQDGQRIASC-GADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFSSDD-SY-IATCSADKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp CTTSSEEEEE-ETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTS-SE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEE-eCCCeEEEEECCCCCEEEEecc-----CCCCEEEEEEecCC-CE-EEEEeCCCeEEEEECCCCceEEEE
Confidence 4455444432 346789999999886432 221 11122556666543 23 22222 678999998886432111
Q ss_pred CCCCccccCCCCceEE----CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--E
Q 042133 190 SVPPEDLDNMSNGVSA----YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--L 263 (299)
Q Consensus 190 ~~~~~~~~~~~~~v~~----~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~ 263 (299)
..... .-..+.+ ++.+...+..+ ..|..+|+.+.+....-. .+.. .-..+. .
T Consensus 696 ~~~~~----~v~~~~~~~~~~~~~l~sg~~d-----------~~v~vwd~~~~~~~~~~~-~h~~------~v~~~~~sp 753 (1249)
T 3sfz_A 696 DEHSE----QVNCCHFTNKSNHLLLATGSND-----------FFLKLWDLNQKECRNTMF-GHTN------SVNHCRFSP 753 (1249)
T ss_dssp ECCSS----CEEEEEECSSSSCCEEEEEETT-----------SCEEEEETTSSSEEEEEC-CCSS------CEEEEEECS
T ss_pred cCCCC----cEEEEEEecCCCceEEEEEeCC-----------CeEEEEECCCcchhheec-CCCC------CEEEEEEec
Confidence 00000 0011222 12222222222 258899998876433211 1111 112333 6
Q ss_pred CCeEEEEEeCCCeEEEEEecc
Q 042133 264 KGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 264 ~g~L~~~~~~~~~~~iW~l~~ 284 (299)
+|++.+++...+.+.+|.+..
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRS 774 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGG
T ss_pred CCCEEEEEECCCeEEEEeCCC
Confidence 788777777888999999864
No 155
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=28.22 E-value=70 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=29.2
Q ss_pred cccEEEEcccch-hhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe
Q 042133 125 VGKAYLCNPLRK-EVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF 171 (299)
Q Consensus 125 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 171 (299)
.-.++++||.|+ .|...-... ..+.+.+|...+.|+|+.+.
T Consensus 15 rA~Vm~~D~~tk~~WvP~g~~~------~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 15 RAHVFQIDPNTKKNWVPTSKHA------VTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEEEECTTSSCCSEESCSSC------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCCCceeecCCCC------eEEEEEEcCCCCEEEEEEcc
Confidence 447899999997 786322211 13667789888889999876
No 156
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=28.06 E-value=2.4e+02 Score=22.90 Aligned_cols=61 Identities=8% Similarity=-0.069 Sum_probs=36.9
Q ss_pred ceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEE
Q 042133 202 GVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIE 278 (299)
Q Consensus 202 ~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~ 278 (299)
++.+ +|.+|.-+.... .|..+|+++.+. ..+ +|.... ...+. .+++|+++.-..+.+-
T Consensus 59 GL~~~~~~Ly~stG~~g-----------~v~~iD~~Tgkv~~~~-l~~~~F-------geGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQG-----------TLRQLSLESAQPVWME-RLGNIF-------AEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEETTEEEEEETTTT-----------EEEECCSSCSSCSEEE-ECTTCC-------EEEEEECSSCEEEEESSSCEEE
T ss_pred eEEEECCEEEEEcCCCC-----------EEEEEECCCCcEEeEE-CCCCcc-------eeEEEEeCCEEEEEEccCCEEE
Confidence 4443 567777776654 599999998755 444 665432 12345 6677777655555554
Q ss_pred EEE
Q 042133 279 IWM 281 (299)
Q Consensus 279 iW~ 281 (299)
++-
T Consensus 120 V~D 122 (268)
T 3nok_A 120 TWS 122 (268)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 157
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=27.62 E-value=3e+02 Score=23.76 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=76.0
Q ss_pred EeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCC--CCc
Q 042133 110 SHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGT--SSW 185 (299)
Q Consensus 110 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~--~~W 185 (299)
+...+|.|++.. ....++++++|.++....+.... ......++.+++..+ + ++... ...+.+|+... +.-
T Consensus 233 vdp~~g~lyv~d-~~~~~V~~~~~~~~~~~~~~~~~---~~~~P~gia~~pdG~-~-lyv~d~~~~~I~~~~~d~~~~~~ 306 (430)
T 3tc9_A 233 THPINGELYFNS-WNAGQVFRYDFTTQETTPLFTIQ---DSGWEFHIQFHPSGN-Y-AYIVVVNQHYILRSDYDWKTKRL 306 (430)
T ss_dssp ECTTTCCEEEEE-TTTTEEEEEETTTTEEEEEEECS---SSSCCEEEEECTTSS-E-EEEEETTTTEEEEEEEETTTTEE
T ss_pred EeCCCCEEEEEE-CCCCEEEEEECCCCcEEEEEEcC---CCCcceeEEEcCCCC-E-EEEEECCCCEEEEEeCCcccccc
Confidence 334477777764 34678999999877653221111 011125677776543 2 22222 34555554432 110
Q ss_pred ---eecCCC------CC----ccccCCCC-ceEEC----------CeeEEeecCCCccCccCCCCccEEEEEECCCCeee
Q 042133 186 ---REISSV------PP----EDLDNMSN-GVSAY----------GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK 241 (299)
Q Consensus 186 ---~~~~~~------~~----~~~~~~~~-~v~~~----------G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~ 241 (299)
..+... .. ........ ++.++ |.+|+...... .|..||.+ .++.
T Consensus 307 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~-----------~I~~i~~~-G~v~ 374 (430)
T 3tc9_A 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH-----------CIRILTPQ-GRVT 374 (430)
T ss_dssp CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT-----------EEEEECTT-SEEE
T ss_pred cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc-----------EEEEECCC-CcEE
Confidence 111100 00 00111122 56653 78888876654 79999964 4555
Q ss_pred eeC-CCCCCCCCccc---------cceeEEE-E--CCeEEEEEeCCCeEEEEEec
Q 042133 242 RTP-TPDFGSLSYEH---------ERFVMIN-L--KGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 242 ~i~-~P~~~~~~~~~---------~~~~~l~-~--~g~L~~~~~~~~~~~iW~l~ 283 (299)
.+- .......++.+ .....|. . +|.|+++......++...++
T Consensus 375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 441 11000000000 1234455 3 68888887777777665554
No 158
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=27.23 E-value=3.1e+02 Score=23.76 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=70.4
Q ss_pred cceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC-----c-eEEEEEcCCCCcee
Q 042133 114 YGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG-----K-RSEIYTLGTSSWRE 187 (299)
Q Consensus 114 ~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-----~-~~~vyss~~~~W~~ 187 (299)
+|-|++. +...++.+++|.+++...+... .....++.+|+..+ ++.... . .+..+.. .+.+..
T Consensus 152 ~g~Lyv~--D~~~~I~~id~~~g~v~~~~~~-----~~~P~giavd~dG~---lyVad~~~~~~~~gv~~~~~-~~~~~~ 220 (433)
T 4hw6_A 152 YDDLYWV--GQRDAFRHVDFVNQYVDIKTTN-----IGQCADVNFTLNGD---MVVVDDQSSDTNTGIYLFTR-ASGFTE 220 (433)
T ss_dssp TCEEEEE--CBTSCEEEEETTTTEEEEECCC-----CSCEEEEEECTTCC---EEEEECCSCTTSEEEEEECG-GGTTCC
T ss_pred CCEEEEE--eCCCCEEEEECCCCEEEEeecC-----CCCccEEEECCCCC---EEEEcCCCCcccceEEEEEC-CCCeec
Confidence 5877777 4237888999988887655431 11226677776543 333321 1 1222222 233321
Q ss_pred cCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eee-CCCCCCCCCccccceeEEE
Q 042133 188 ISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRT-PTPDFGSLSYEHERFVMIN 262 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i-~~P~~~~~~~~~~~~~~l~ 262 (299)
....+ ......++.+ +|.+|+...... .|..||.++.+. ..+ ...... ....|.
T Consensus 221 ~~~~~---~~~~P~giavd~~~G~lyv~d~~~~-----------~V~~~d~~~g~~~~~~~~~~~~~-------~~~~ia 279 (433)
T 4hw6_A 221 RLSLC---NARGAKTCAVHPQNGKIYYTRYHHA-----------MISSYDPATGTLTEEEVMMDTKG-------SNFHIV 279 (433)
T ss_dssp EEEEE---ECSSBCCCEECTTTCCEEECBTTCS-----------EEEEECTTTCCEEEEEEECSCCS-------SCEEEE
T ss_pred ccccc---ccCCCCEEEEeCCCCeEEEEECCCC-----------EEEEEECCCCeEEEEEeccCCCC-------CcccEE
Confidence 00000 1112234555 588888766554 799999987665 322 222111 112234
Q ss_pred --ECCe-EEEEEeCCCeEEEEEec
Q 042133 263 --LKGC-LAIVILTPEDIEIWMMK 283 (299)
Q Consensus 263 --~~g~-L~~~~~~~~~~~iW~l~ 283 (299)
.+|+ |+++......+....++
T Consensus 280 ~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 280 WHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCC
Confidence 5565 77666666655554443
No 159
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=27.03 E-value=3.1e+02 Score=23.74 Aligned_cols=154 Identities=8% Similarity=-0.053 Sum_probs=75.4
Q ss_pred eecceEEeeEeCCcccEEEEcccchhh-hcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcC--CCCce
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEV-LELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLG--TSSWR 186 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~-~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~--~~~W~ 186 (299)
..+|.|++.. ....++++++|.++.. ..+.... . .....++.+++..+ .++... ...+.+++.. ++...
T Consensus 237 ~~~G~lyv~d-~~~~~V~~~d~~~g~~~~~~~~~~--~-~~~~~~ia~dpdG~--~LYvad~~~~~I~~~~~d~~~~~~~ 310 (433)
T 4hw6_A 237 PQNGKIYYTR-YHHAMISSYDPATGTLTEEEVMMD--T-KGSNFHIVWHPTGD--WAYIIYNGKHCIYRVDYNRETGKLA 310 (433)
T ss_dssp TTTCCEEECB-TTCSEEEEECTTTCCEEEEEEECS--C-CSSCEEEEECTTSS--EEEEEETTTTEEEEEEBCTTTCCBC
T ss_pred CCCCeEEEEE-CCCCEEEEEECCCCeEEEEEeccC--C-CCCcccEEEeCCCC--EEEEEeCCCCEEEEEeCCCCCcccC
Confidence 3367776663 2356788999987765 2222111 0 11114677776543 233222 3566665543 22211
Q ss_pred ---ecCCC------CC----ccccCCCCceEE-----------CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee
Q 042133 187 ---EISSV------PP----EDLDNMSNGVSA-----------YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR 242 (299)
Q Consensus 187 ---~~~~~------~~----~~~~~~~~~v~~-----------~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~ 242 (299)
.+... .. ...+....++.+ +|.+|+...... .|..||.. .+...
T Consensus 311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~-----------~I~~~~~~-G~v~t 378 (433)
T 4hw6_A 311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH-----------TVRVLTPE-GRVTT 378 (433)
T ss_dssp CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT-----------EEEEECTT-SEEEE
T ss_pred cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC-----------EEEEECCC-CCEEE
Confidence 11100 00 001112234555 467887766554 78899974 45544
Q ss_pred e-CCCCCCCCCccc---------cceeEEE-E--CCeEEEEEeCCCeEEEEEec
Q 042133 243 T-PTPDFGSLSYEH---------ERFVMIN-L--KGCLAIVILTPEDIEIWMMK 283 (299)
Q Consensus 243 i-~~P~~~~~~~~~---------~~~~~l~-~--~g~L~~~~~~~~~~~iW~l~ 283 (299)
+ -.+.....++.+ .....|. . +|.|+++......++...++
T Consensus 379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4 221100000000 1234455 4 79998888877777776665
No 160
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=26.71 E-value=2.8e+02 Score=23.16 Aligned_cols=147 Identities=9% Similarity=-0.041 Sum_probs=72.9
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhh-cCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceec
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVL-ELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREI 188 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~ 188 (299)
+.+|-+++.. .....+.++|+.+++.. .++.. ......+.+++... + ++... +..+.+|+..++.....
T Consensus 178 ~~~~~~~~s~-~~d~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~-l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 178 PEHNELWVSQ-MQANAVHVFDLKTLAYKATVDLT-----GKWSKILLYDPIRD-L-VYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp GGGTEEEEEE-GGGTEEEEEETTTCCEEEEEECS-----SSSEEEEEEETTTT-E-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCCEEEEEE-CCCCEEEEEECCCceEEEEEcCC-----CCCeeEEEEcCCCC-E-EEEEecCCCcEEEEECCCCcEEEE
Confidence 4456555553 33578899998876543 22211 11224566666433 2 32333 57889999887654322
Q ss_pred CCCCCccccCCCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeC-CCCCCCCCccccceeEEE--E
Q 042133 189 SSVPPEDLDNMSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTP-TPDFGSLSYEHERFVMIN--L 263 (299)
Q Consensus 189 ~~~~~~~~~~~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~l~--~ 263 (299)
-..... ...+.+ +|...+.+..+.. ........|..+|+.+.+..... .+. ....+. .
T Consensus 250 ~~~~~~-----~~~~~~~~~g~~l~~~~~~~~---~~~~~dg~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~ 312 (433)
T 3bws_A 250 TDKIGL-----PRGLLLSKDGKELYIAQFSAS---NQESGGGRLGIYSMDKEKLIDTIGPPG---------NKRHIVSGN 312 (433)
T ss_dssp CCCCSE-----EEEEEECTTSSEEEEEEEESC---TTCSCCEEEEEEETTTTEEEEEEEEEE---------CEEEEEECS
T ss_pred ecCCCC-----ceEEEEcCCCCEEEEEECCCC---ccccCCCeEEEEECCCCcEEeeccCCC---------CcceEEECC
Confidence 111110 112333 4544444432110 00002246889999887553331 111 112233 4
Q ss_pred CCe-EEEEEeCCCeEEEEEec
Q 042133 264 KGC-LAIVILTPEDIEIWMMK 283 (299)
Q Consensus 264 ~g~-L~~~~~~~~~~~iW~l~ 283 (299)
+|+ |++.....+.+.+|.++
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp STTEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEecCCCEEEEEECC
Confidence 564 55555577888888876
No 161
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=26.50 E-value=81 Score=21.86 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=29.8
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF 171 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 171 (299)
.-.+++++|.|+.|. |... ......+.+..|...+.|+|+...
T Consensus 10 ~A~V~~~d~~~~~W~--p~~~--~~g~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 10 RAAVMVYDDANKKWV--PAGG--STGFSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEEEETTTTEEE--EGGG--CCSCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCceE--ECCC--CCCceEEEEEEECCCCEEEEEEEE
Confidence 447889999999775 4332 111223788889888899998764
No 162
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=26.01 E-value=4e+02 Score=24.67 Aligned_cols=153 Identities=8% Similarity=-0.080 Sum_probs=0.0
Q ss_pred EEEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCce
Q 042133 108 FISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWR 186 (299)
Q Consensus 108 ~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~ 186 (299)
.+.-+.+|-.+... ..+..+.|||..+++....-... ......+.+.+... .++... +..+.+|+..++ |.
T Consensus 60 ~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~----~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~-~~ 131 (814)
T 3mkq_A 60 AGKFIARKNWIIVG-SDDFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENN-WA 131 (814)
T ss_dssp EEEEEGGGTEEEEE-ETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGT-SE
T ss_pred EEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEecC----CCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCC-ce
Q ss_pred ecCCCCCccccCCCCceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE-E-
Q 042133 187 EISSVPPEDLDNMSNGVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN-L- 263 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~-~- 263 (299)
.......+......-...- +|.....+..+. .|..+|+.+.+........... .....-. .
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----------~v~vwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~ 195 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-----------TVKVWSLGQSTPNFTLTTGQER-----GVNYVDYYPL 195 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----------EEEEEETTCSSCSEEEECCCTT-----CCCEEEECCS
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCCcceeEEecCCCC-----CEEEEEEEEC
Q ss_pred -CCeEEEEEeCCCeEEEEEecc
Q 042133 264 -KGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 264 -~g~L~~~~~~~~~~~iW~l~~ 284 (299)
+|.+.+++...+.+.+|.++.
T Consensus 196 ~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 196 PDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp TTCCEEEEECTTSEEEEEETTT
T ss_pred CCCCEEEEEeCCCEEEEEECCC
No 163
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=25.65 E-value=94 Score=26.33 Aligned_cols=57 Identities=9% Similarity=-0.048 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCceecCCCCCcc----ccCCCCceE-------ECCeeEEeecCCCccCccCCCCccEEEEEECCCCee
Q 042133 172 GKRSEIYTLGTSSWREISSVPPED----LDNMSNGVS-------AYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF 240 (299)
Q Consensus 172 ~~~~~vyss~~~~W~~~~~~~~~~----~~~~~~~v~-------~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~ 240 (299)
+-.+..|+..+|.|+.....+... ......+|. .+|.+|.-...+. +.++|+.+.+.
T Consensus 66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~------------l~ald~~tG~~ 133 (339)
T 2be1_A 66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI------------MYTINMLNGEI 133 (339)
T ss_dssp TTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEE------------EEEEETTTCCE
T ss_pred CCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCE------------EEEEECCCCcE
Confidence 456777777777665321111000 111223444 7899998887775 99999998754
No 164
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=25.25 E-value=3.2e+02 Score=23.27 Aligned_cols=140 Identities=12% Similarity=0.122 Sum_probs=71.1
Q ss_pred cccEEEE--cccchhhhcCCCC--CCCCCCcceEEEeE--eCCCCCEEEEEEe-CceEEEEEc---CCCCcee--cCCCC
Q 042133 125 VGKAYLC--NPLRKEVLELPQA--TTGGSWLDFYAMGF--DGTTSTYKIVRVF-GKRSEIYTL---GTSSWRE--ISSVP 192 (299)
Q Consensus 125 ~~~~~V~--NP~T~~~~~lP~~--~~~~~~~~~~~l~~--d~~~~~ykvv~~~-~~~~~vyss---~~~~W~~--~~~~~ 192 (299)
..++.|+ ||.+++...+..+ +.........++++ ++.++.+.++... +-.++.|.. +.+.... +....
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 4556666 9999988777432 10011111144444 7777776666665 455656555 4443321 11111
Q ss_pred CccccCCCCceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCC---eeeee---CCCCCCCCCccccceeEEE-
Q 042133 193 PEDLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKE---EFKRT---PTPDFGSLSYEHERFVMIN- 262 (299)
Q Consensus 193 ~~~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~---~~~~i---~~P~~~~~~~~~~~~~~l~- 262 (299)
. .....+..+| |.+|.--... .|..||.+-+ +-..+ ..+.... +-....|.
T Consensus 178 l---gsq~EgcvvDd~~g~Lyv~eEd~------------GIw~~da~p~~~~~~~~v~~~~~g~l~a----DvEGLai~~ 238 (355)
T 3amr_A 178 M---NSQTEGMAADDEYGRLYIAEEDE------------AIWKFSAEPDGGSNGTVIDRADGRHLTR----DIEGLTIYY 238 (355)
T ss_dssp C---SSCEEEEEEETTTTEEEEEETTT------------EEEEEECSTTSCSCCEEEEEBSSSSBCS----CEEEEEEEE
T ss_pred C---CCCcceEEEcCCCCeEEEecccc------------eEEEEeCCcCCCCCceEEEEecCCcccc----CcceEEEEe
Confidence 1 1122355554 7888765553 5999996622 12223 2222111 12223343
Q ss_pred -ECCe--EEEEEeCCCeEEEEEec
Q 042133 263 -LKGC--LAIVILTPEDIEIWMMK 283 (299)
Q Consensus 263 -~~g~--L~~~~~~~~~~~iW~l~ 283 (299)
.+|+ |++++-..+.+.|+.++
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 2333 44444478899999886
No 165
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=25.01 E-value=2.7e+02 Score=22.47 Aligned_cols=63 Identities=10% Similarity=-0.099 Sum_probs=39.4
Q ss_pred EECCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeEEEEE
Q 042133 204 SAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDIEIWM 281 (299)
Q Consensus 204 ~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~~iW~ 281 (299)
+.+|.+|.-++... ...|..+|+++.+. ..+++|.... ...|. .+++|+++.-..+.+-++-
T Consensus 50 ~~~~~LyestG~~g---------~S~v~~vD~~Tgkv~~~~~l~~~~F-------geGit~~g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 50 YRNGYFYESTGLNG---------RSSIRKVDIESGKTLQQIELGKRYF-------GEGISDWKDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp EETTEEEEEEEETT---------EEEEEEECTTTCCEEEEEECCTTCC-------EEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EECCEEEEECCCCC---------CceEEEEECCCCcEEEEEecCCccc-------eeEEEEeCCEEEEEEeeCCEEEEEE
Confidence 34677777665531 24699999998765 5567775432 13455 6778877765555555544
Q ss_pred e
Q 042133 282 M 282 (299)
Q Consensus 282 l 282 (299)
.
T Consensus 114 ~ 114 (262)
T 3nol_A 114 I 114 (262)
T ss_dssp T
T ss_pred C
Confidence 3
No 166
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=24.82 E-value=4e+02 Score=24.33 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=61.6
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCcee-cCCCCCccccCCCCc
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWRE-ISSVPPEDLDNMSNG 202 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~ 202 (299)
+..+.|||...+....+..... ........+.+.+....-.++... +..+.+++..++.-.. +...... -..
T Consensus 493 D~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~-----v~~ 566 (694)
T 3dm0_A 493 DRTIKLWNTLGECKYTISEGGE-GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-----VST 566 (694)
T ss_dssp TSCEEEECTTSCEEEEECSSTT-SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEE
T ss_pred CCEEEEEECCCCcceeeccCCC-CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-----EEE
Confidence 4467777765443332222110 011112455566554333444444 6888999887654221 1110000 012
Q ss_pred eEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEE
Q 042133 203 VSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIE 278 (299)
Q Consensus 203 v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~ 278 (299)
+.+ +|.+...+..+. .|..+|+.+.+... .+.... .-..+. .+|.+.. ......+.
T Consensus 567 v~~spdg~~l~sg~~Dg-----------~i~iwd~~~~~~~~-~~~~~~-------~v~~~~~sp~~~~l~-~~~~~~i~ 626 (694)
T 3dm0_A 567 VAVSPDGSLCASGGKDG-----------VVLLWDLAEGKKLY-SLEANS-------VIHALCFSPNRYWLC-AATEHGIK 626 (694)
T ss_dssp EEECTTSSEEEEEETTS-----------BCEEEETTTTEEEE-CCBCSS-------CEEEEEECSSSSEEE-EEETTEEE
T ss_pred EEEeCCCCEEEEEeCCC-----------eEEEEECCCCceEE-EecCCC-------cEEEEEEcCCCcEEE-EEcCCCEE
Confidence 222 454443333332 58889998775422 222111 112333 4455443 34445699
Q ss_pred EEEecc
Q 042133 279 IWMMKD 284 (299)
Q Consensus 279 iW~l~~ 284 (299)
||.++.
T Consensus 627 iwd~~~ 632 (694)
T 3dm0_A 627 IWDLES 632 (694)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 998763
No 167
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=24.69 E-value=1.2e+02 Score=25.95 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=27.0
Q ss_pred CCeEEEEEeCCCeEEEEEeccCCCCceeEEEEEec
Q 042133 264 KGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITH 298 (299)
Q Consensus 264 ~g~L~~~~~~~~~~~iW~l~~~~~~~W~~~~~i~~ 298 (299)
-+++|++...+..+.+|...+. ..|+++|+..+
T Consensus 52 ~~~~~~~~~~~~~v~lw~~~~~--~~~~~~~~~~~ 84 (356)
T 2w18_A 52 CKEPCIITACEDVVSLWKALDA--WQWEKLYTWHF 84 (356)
T ss_dssp -CEEEEEEEESSEEEEEEESSS--SBEEEEEEEEC
T ss_pred CCccEEEEeccceEEEcccCCC--ccceeeEEEec
Confidence 3678999999999999999863 47999998754
No 168
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.49 E-value=3.3e+02 Score=23.20 Aligned_cols=148 Identities=9% Similarity=-0.013 Sum_probs=73.3
Q ss_pred EEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe--C-ceEEEEEcCCCC-
Q 042133 109 ISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF--G-KRSEIYTLGTSS- 184 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~-~~~~vyss~~~~- 184 (299)
+.-+.+|-|++.. .....+.++++.+++...+.... ... . +.+++..+ .++... . ..+.+++..++.
T Consensus 136 la~d~~g~lyv~d-~~~~~I~~id~~~g~~~~~~~~~---~~~--~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 136 IAAVGNNTVLAYQ-RDDPRVRLISVDDNKVTTVHPGF---KGG--K-PAVTKDKQ--RVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEECSTTEEEEEE-TTTTEEEEEETTTTEEEEEEETC---CBC--B-CEECTTSS--EEEEEBSSTTCEEEEEEGGGTTC
T ss_pred EEEeCCCCEEEEe-cCCCcEEEEECCCCEEEEeeccC---CCC--c-eeEecCCC--cEEEEecCCCceEEEEEcCCCce
Confidence 3334667776663 33578999999988776553321 011 2 44454432 233332 1 156666665432
Q ss_pred ceecCCCCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee-CCCCCCCCCcccccee-
Q 042133 185 WREISSVPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT-PTPDFGSLSYEHERFV- 259 (299)
Q Consensus 185 W~~~~~~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~- 259 (299)
.+.+...... ......++.+ +|.+|+.. ... .|..+|+++.....+ ..+...... ....
T Consensus 207 ~~~~g~~~~~-~~~~p~~iav~p~~g~lyv~d-~~~-----------~I~~~d~~~~~~~~~~~~~~~g~~~---~~P~~ 270 (409)
T 3hrp_A 207 PTRIGQLGST-FSGKIGAVALDETEEWLYFVD-SNK-----------NFGRFNVKTQEVTLIKQLELSGSLG---TNPGP 270 (409)
T ss_dssp EEEEEECCTT-SCSCCCBCEECTTSSEEEEEC-TTC-----------EEEEEETTTCCEEEEEECCCCSCCC---CSSCC
T ss_pred eEEeeeccch-hcCCcEEEEEeCCCCeEEEEE-CCC-----------cEEEEECCCCCEEEEecccccCCCC---CCccc
Confidence 2222111000 0111223444 68899843 332 699999998766555 111111110 1101
Q ss_pred EEE---ECCeEEEEEeCCCeEEEEE
Q 042133 260 MIN---LKGCLAIVILTPEDIEIWM 281 (299)
Q Consensus 260 ~l~---~~g~L~~~~~~~~~~~iW~ 281 (299)
.|. .+|.|+++......+..|.
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~ 295 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKIT 295 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEC
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 344 3688887776655554443
No 169
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=24.49 E-value=1.1e+02 Score=21.22 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=29.8
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcc-eEEEeEeCCCCCEEEEEEe
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLD-FYAMGFDGTTSTYKIVRVF 171 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~l~~d~~~~~ykvv~~~ 171 (299)
.-.+++++|.|+.|. |... ..... .+.+..|...+.|.|+...
T Consensus 10 ~A~V~~~d~~~~~W~--p~~~--g~~gvs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 10 RATVMLYDDGNKRWL--PAGT--GPQAFSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp EEECBEECTTTSSCC--BSSC--SCCCCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcee--ECCC--CCCCccEEEEEEeCCCCEEEEEEEE
Confidence 346789999999975 4332 11122 3778889888899988764
No 170
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=24.32 E-value=2.7e+02 Score=22.15 Aligned_cols=147 Identities=7% Similarity=-0.100 Sum_probs=74.5
Q ss_pred eecce-EEeeEeCCcccEEEEcc-cchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCC-----
Q 042133 112 SAYGL-FCFHTRGGVGKAYLCNP-LRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSS----- 184 (299)
Q Consensus 112 s~~GL-l~~~~~~~~~~~~V~NP-~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~----- 184 (299)
+.+|- .++.. ..+..+.+||. .+++...+.... .......+.+.+ +.+-+..-.+..+.+|+..+..
T Consensus 65 ~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~---~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 65 IDNTDLQIYVG-TVQGEILKVDLIGSPSFQALTNNE---ANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EESSSEEEEEE-ETTSCEEEECSSSSSSEEECBSCC---CCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred CCCCCcEEEEE-cCCCeEEEEEeccCCceEeccccC---CCCceEEEEeCC--CCEEEEEcCCCeEEEEccccccccccc
Confidence 44454 33332 44778999999 888765554310 111225666666 3333322226788888776400
Q ss_pred --ceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCC-Ce--eeeeCCCCCCCCCcccccee
Q 042133 185 --WREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKK-EE--FKRTPTPDFGSLSYEHERFV 259 (299)
Q Consensus 185 --W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~-~~--~~~i~~P~~~~~~~~~~~~~ 259 (299)
.+.+..... ...-..+.+.+.-...+..+ ..|..+|+.+ .. ......+... .-.
T Consensus 139 ~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~-------~i~ 197 (342)
T 1yfq_A 139 VKNLNSNNTKV---KNKIFTMDTNSSRLIVGMNN-----------SQVQWFRLPLCEDDNGTIEESGLKY-------QIR 197 (342)
T ss_dssp EEESCSSSSSS---CCCEEEEEECSSEEEEEEST-----------TEEEEEESSCCTTCCCEEEECSCSS-------CEE
T ss_pred ccCCeeeEEee---CCceEEEEecCCcEEEEeCC-----------CeEEEEECCccccccceeeecCCCC-------cee
Confidence 111111110 00111333332222222222 2689999987 33 3333332221 113
Q ss_pred EEE--E-CCeEEEEEeCCCeEEEEEeccC
Q 042133 260 MIN--L-KGCLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 260 ~l~--~-~g~L~~~~~~~~~~~iW~l~~~ 285 (299)
.+. . +|++++++...+.+.||.++..
T Consensus 198 ~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 344 4 7888888888899999998754
No 171
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=24.23 E-value=2.7e+02 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=29.3
Q ss_pred EEEEEECCC-Ceeee-----eCCCCCCCCCccccceeEEE--ECCeEEEEEe-CCCeEEEEEecc
Q 042133 229 VIISFDFKK-EEFKR-----TPTPDFGSLSYEHERFVMIN--LKGCLAIVIL-TPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~-~~~~~-----i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~-~~~~~~iW~l~~ 284 (299)
.|..+|+.+ .+... +..+... ....+. .+|+..++.. ..+.+.+|.++.
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGA-------GPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTC-------CEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred EEEEEEecCCCceeeecccccccCCCC-------CcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 599999987 55542 3333221 112333 5676444444 788999999863
No 172
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.19 E-value=3.1e+02 Score=22.81 Aligned_cols=51 Identities=12% Similarity=0.309 Sum_probs=33.3
Q ss_pred EEEEEECCCCeeeee-CCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEeccC
Q 042133 229 VIISFDFKKEEFKRT-PTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKDY 285 (299)
Q Consensus 229 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~~ 285 (299)
.|..+|+.+.+.... .++.+.. .-..+. .+|++.+++...+.+.||.+.+.
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~------~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDT------RVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSS------CCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred cEEEEecCCccceeEEEecCCCC------CEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 689999988765443 3433322 112333 67887777778899999999753
No 173
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=24.17 E-value=2.8e+02 Score=22.27 Aligned_cols=147 Identities=9% Similarity=0.076 Sum_probs=69.1
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhc-CCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLE-LPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREIS 189 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~ 189 (299)
+.+|-.++.. ..+..+.|||..+++... +.. .......+.+++.. . .++... +..+.+++.....-....
T Consensus 74 s~dg~~l~s~-s~D~~v~~wd~~~~~~~~~~~~-----h~~~v~~~~~~~~~-~-~l~s~s~D~~i~vwd~~~~~~~~~~ 145 (319)
T 3frx_A 74 TADGAYALSA-SWDKTLRLWDVATGETYQRFVG-----HKSDVMSVDIDKKA-S-MIISGSRDKTIKVWTIKGQCLATLL 145 (319)
T ss_dssp CTTSSEEEEE-ETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECTTS-C-EEEEEETTSCEEEEETTSCEEEEEC
T ss_pred CCCCCEEEEE-eCCCEEEEEECCCCCeeEEEcc-----CCCcEEEEEEcCCC-C-EEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455544443 346789999998876432 111 01111445555432 1 233333 678888887643322221
Q ss_pred CCCCcc---ccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--EC
Q 042133 190 SVPPED---LDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LK 264 (299)
Q Consensus 190 ~~~~~~---~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~ 264 (299)
...... .........-++.....+..+. .|..+|+.+.+....-. .+. ..-..+. .+
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----------~i~~wd~~~~~~~~~~~-~h~------~~v~~~~~sp~ 207 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDK-----------MVKAWNLNQFQIEADFI-GHN------SNINTLTASPD 207 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTS-----------CEEEEETTTTEEEEEEC-CCC------SCEEEEEECTT
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCC-----------EEEEEECCcchhheeec-CCC------CcEEEEEEcCC
Confidence 110000 0000001111232233332222 58888988765432211 111 1112333 67
Q ss_pred CeEEEEEeCCCeEEEEEecc
Q 042133 265 GCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 265 g~L~~~~~~~~~~~iW~l~~ 284 (299)
|++.+.+...+.+.||.+..
T Consensus 208 g~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp SSEEEEEETTCEEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEECCC
Confidence 88777777888999998763
No 174
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=24.02 E-value=2.7e+02 Score=22.02 Aligned_cols=47 Identities=6% Similarity=0.169 Sum_probs=28.6
Q ss_pred EEEEEECCCCeee-eeCCCCCCCCCccccceeEEE--ECCeEEEEEe--CCCeEEEEEec
Q 042133 229 VIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMIN--LKGCLAIVIL--TPEDIEIWMMK 283 (299)
Q Consensus 229 ~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~--~~~~~~iW~l~ 283 (299)
.|..+|+.+.+.. .+.-+.. .-..+. .++.+.+.+. ..+.+.||..+
T Consensus 260 ~i~vwd~~~~~~~~~~~~h~~--------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKLQGHTD--------VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSS--------CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhhhccCC--------cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 6899999887543 2222211 112334 5666666554 68899999865
No 175
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=23.84 E-value=3.2e+02 Score=22.78 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=73.7
Q ss_pred eecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCC
Q 042133 112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISS 190 (299)
Q Consensus 112 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~ 190 (299)
+.+|-.++.. ..+..+.|||..+++....-... ......+.+.+... .++... +..+.+++..++.-...-.
T Consensus 132 s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 132 SPDGKFLATG-AEDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp CTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEE-cCCCeEEEEECCCCcEEEEEccC----CCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE
Confidence 4456444442 34678999998887654321111 11124566655432 233333 6889999888765322111
Q ss_pred CCCccccCCCCceEE---CCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCccccceeEEE--EC
Q 042133 191 VPPEDLDNMSNGVSA---YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFVMIN--LK 264 (299)
Q Consensus 191 ~~~~~~~~~~~~v~~---~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~l~--~~ 264 (299)
.... ...+.+ +|.+...+..+. .|..+|+.+.+.. .+..+...... ....-..+. .+
T Consensus 205 ~~~~-----v~~~~~~~~~~~~l~~~s~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~ 267 (393)
T 1erj_A 205 IEDG-----VTTVAVSPGDGKYIAAGSLDR-----------AVRVWDSETGFLVERLDSENESGTG-HKDSVYSVVFTRD 267 (393)
T ss_dssp CSSC-----EEEEEECSTTCCEEEEEETTS-----------CEEEEETTTCCEEEEEC------CC-CSSCEEEEEECTT
T ss_pred cCCC-----cEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCcEEEeecccccCCCC-CCCCEEEEEECCC
Confidence 1000 011222 444444433332 5888999876543 23222211100 001122334 57
Q ss_pred CeEEEEEeCCCeEEEEEecc
Q 042133 265 GCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 265 g~L~~~~~~~~~~~iW~l~~ 284 (299)
|++.+.+...+.+.||.++.
T Consensus 268 g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 268 GQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp SSEEEEEETTSEEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEECCC
Confidence 88877777889999999864
No 176
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=23.77 E-value=3e+02 Score=22.41 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=57.4
Q ss_pred EEEeEeCCCCCEEEEEEe--CceEEEEEcCCCCceecCCC---CCccccCCCCceEE--CCe-eEEeecC-CCccCccCC
Q 042133 154 YAMGFDGTTSTYKIVRVF--GKRSEIYTLGTSSWREISSV---PPEDLDNMSNGVSA--YGD-MHWADDD-HFSFGQRKG 224 (299)
Q Consensus 154 ~~l~~d~~~~~ykvv~~~--~~~~~vyss~~~~W~~~~~~---~~~~~~~~~~~v~~--~G~-~yw~~~~-~~~~~~~~~ 224 (299)
..+.+++... + ++... +..+.+|+..++..+.+... +... .....+.+ ||. +|..... ..
T Consensus 214 ~~~~~spdg~-~-l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~--~~~~~i~~spdg~~l~v~~~~~~~------- 282 (361)
T 3scy_A 214 RHLIFNSDGK-F-AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA--QGSGDIHLSPDGKYLYASNRLKAD------- 282 (361)
T ss_dssp EEEEECTTSS-E-EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC--CCEEEEEECTTSSEEEEEECSSSC-------
T ss_pred eEEEEcCCCC-E-EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC--CCcccEEECCCCCEEEEECCCCCC-------
Confidence 4566666542 2 22232 57889999887766544322 1110 00123333 676 4544433 22
Q ss_pred CCccEEEEEECC--CCeeeee-CCCCCCCCCccccceeEEEECCeEEEEEe-CCCeEEEEEecc
Q 042133 225 VDNCVIISFDFK--KEEFKRT-PTPDFGSLSYEHERFVMINLKGCLAIVIL-TPEDIEIWMMKD 284 (299)
Q Consensus 225 ~~~~~il~fD~~--~~~~~~i-~~P~~~~~~~~~~~~~~l~~~g~L~~~~~-~~~~~~iW~l~~ 284 (299)
.|..||+. +.++..+ .++.... .....+.-+|+..++.. ..+.+.||.++.
T Consensus 283 ----~i~v~~~~~~~g~~~~~~~~~~g~~-----~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 283 ----GVAIFKVDETNGTLTKVGYQLTGIH-----PRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ----EEEEEEECTTTCCEEEEEEEECSSC-----CCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred ----EEEEEEEcCCCCcEEEeeEecCCCC-----CceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 57777774 5565554 3332111 11122226777555555 788999998873
No 177
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=23.74 E-value=4.2e+02 Score=24.13 Aligned_cols=107 Identities=7% Similarity=-0.012 Sum_probs=52.5
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeC-----ceEEEEEcCCC-CceecCCCCCccccC
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFG-----KRSEIYTLGTS-SWREISSVPPEDLDN 198 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-----~~~~vyss~~~-~W~~~~~~~~~~~~~ 198 (299)
...++++|..+++...+.... ........+.+.+... +-++...+ ..+.+++..++ ..+.+..........
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 467999999998866554321 1111113444544332 21111111 36777777776 555443210000000
Q ss_pred CCCceEE----CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeee
Q 042133 199 MSNGVSA----YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRT 243 (299)
Q Consensus 199 ~~~~v~~----~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i 243 (299)
....+.+ ||.+.+....+. ...|..+|..+.....+
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g---------~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG---------WNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS---------SCEEEEEETTSCEEEEC
T ss_pred ccCCceeecCCCCEEEEEEccCC---------ccEEEEEECCCCEEEec
Confidence 0112222 787666553321 24688888777666555
No 178
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=23.29 E-value=2e+02 Score=22.75 Aligned_cols=48 Identities=8% Similarity=-0.085 Sum_probs=28.6
Q ss_pred EEEEEECCCCe-eeeeCCCCCCCCCccccceeEEE--ECCe-EEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEE-FKRTPTPDFGSLSYEHERFVMIN--LKGC-LAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~l~--~~g~-L~~~~~~~~~~~iW~l~~ 284 (299)
.|..||.++.+ ...+..|... ...+. .+|+ |++.....+.+..+.++.
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~--------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEK--------PSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSC--------EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCCcEeEEEeCCCCC--------ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 69999998544 3455555321 12333 5677 666555667777776654
No 179
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=23.23 E-value=3.5e+02 Score=23.00 Aligned_cols=161 Identities=9% Similarity=-0.110 Sum_probs=0.0
Q ss_pred eEEEeeecceEEeeEeCCcccEEEEccc--chhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCC
Q 042133 107 NFISHSAYGLFCFHTRGGVGKAYLCNPL--RKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSS 184 (299)
Q Consensus 107 ~~~~~s~~GLl~~~~~~~~~~~~V~NP~--T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~ 184 (299)
..+.-+.+|-.++.....+..+.||+.. +++....-... ........+.+++ .+.+-++.-.+..+.+++..++.
T Consensus 106 ~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 106 RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--CFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--ECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--cCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcc
Q ss_pred ce--ecCCCCCccccCCCCceEEC---CeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCcccccee
Q 042133 185 WR--EISSVPPEDLDNMSNGVSAY---GDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFV 259 (299)
Q Consensus 185 W~--~~~~~~~~~~~~~~~~v~~~---G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~ 259 (299)
-. .......+......-...-+ |.....+..+. .|..+|+.+.+.....+..+... -...
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~~~~~h~~~----v~~~ 247 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-----------HIKISHYPQCFIVDKWLFGHKHF----VSSI 247 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-----------CEEEEEESCTTCEEEECCCCSSC----EEEE
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-----------cEEEEECCCCceeeeeecCCCCc----eEEE
Q ss_pred EEEECCeEEEEEeCCCeEEEEEeccCC
Q 042133 260 MINLKGCLAIVILTPEDIEIWMMKDYD 286 (299)
Q Consensus 260 ~l~~~g~L~~~~~~~~~~~iW~l~~~~ 286 (299)
.+. +|++.+.+...+.+.||.++...
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCc
No 180
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.46 E-value=66 Score=20.49 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=16.1
Q ss_pred CCcccEEEEcccchhhhcCCC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQ 143 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~ 143 (299)
...++.|.+||.|++...--|
T Consensus 27 T~dGR~fyyN~~Tk~S~WekP 47 (73)
T 2dk7_A 27 TGDERVFFYNPTTRLSMWDRP 47 (73)
T ss_dssp ESSSCEEEEETTTTEECSSCC
T ss_pred CCCCCEEEecCcccceeccCC
Confidence 448899999999998664433
No 181
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=22.30 E-value=3e+02 Score=21.92 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=41.3
Q ss_pred CceEE-CCeeEEeecCCCccCccCCCCccEEEEEECCCCee-eeeCCCCCCCCCccccceeEEE-ECCeEEEEEeCCCeE
Q 042133 201 NGVSA-YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN-LKGCLAIVILTPEDI 277 (299)
Q Consensus 201 ~~v~~-~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~-~~g~L~~~~~~~~~~ 277 (299)
+++.+ +|.+|.-++.. ....|..+|+++.+. ..+++|..... ..+. .+++|+++.-..+.+
T Consensus 24 qGL~~~~~~LyestG~~---------g~S~v~~vD~~tgkv~~~~~l~~~~fg-------eGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 24 EGLFYLRGHLYESTGET---------GRSSVRKVDLETGRILQRAEVPPPYFG-------AGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEETTEEEEEECCT---------TSCEEEEEETTTCCEEEEEECCTTCCE-------EEEEEETTEEEEEESSSSEE
T ss_pred ccEEEECCEEEEECCCC---------CCceEEEEECCCCCEEEEEeCCCCcce-------eEEEEeCCEEEEEEeeCCEE
Confidence 45444 56677665543 134799999998765 55688765431 3455 778888876565555
Q ss_pred EEEEe
Q 042133 278 EIWMM 282 (299)
Q Consensus 278 ~iW~l 282 (299)
-++-.
T Consensus 88 ~v~D~ 92 (243)
T 3mbr_X 88 FVYDL 92 (243)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 55443
No 182
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=22.26 E-value=3e+02 Score=21.95 Aligned_cols=139 Identities=9% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCcccEEEEcccchh--hhcCCCCCCCCCCcceEEEeEeC--CCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCcccc
Q 042133 123 GGVGKAYLCNPLRKE--VLELPQATTGGSWLDFYAMGFDG--TTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLD 197 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~--~~~lP~~~~~~~~~~~~~l~~d~--~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~ 197 (299)
..+..+.|||..+++ ...+...... .......+.+.. ..+.-.++... +..+.+|+..++.=.........
T Consensus 136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--- 211 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDPVANMEPVQGE-NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNG--- 211 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCTTS-CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSC---
T ss_pred eCCCeEEEEeCCCCCCcceeccccCCC-CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCc---
Confidence 346789999988875 2223222210 011113333322 11122222222 67899999887543211111000
Q ss_pred CCCCceEE-----CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee-eC---CCCCCCCCccccceeEEE--ECCe
Q 042133 198 NMSNGVSA-----YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TP---TPDFGSLSYEHERFVMIN--LKGC 266 (299)
Q Consensus 198 ~~~~~v~~-----~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~---~P~~~~~~~~~~~~~~l~--~~g~ 266 (299)
-..+.+ +|.....+..+. .|..+|+.+.+... +. +..+. ..-..+. .+|+
T Consensus 212 --v~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 212 --VCSLEFDRKDISMNKLVATSLEG-----------KFHVFDMRTQHPTKGFASVSEKAHK------STVWQVRHLPQNR 272 (357)
T ss_dssp --EEEEEESCSSSSCCEEEEEESTT-----------EEEEEEEEEEETTTEEEEEEEECCS------SCEEEEEEETTEE
T ss_pred --eEEEEcCCCCCCCCEEEEECCCC-----------eEEEEeCcCCCcccceeeeccCCCc------CCEEEEEECCCCC
Confidence 112222 344444443333 68888887653211 11 11111 1112333 5566
Q ss_pred -EEEEEeCCCeEEEEEecc
Q 042133 267 -LAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 267 -L~~~~~~~~~~~iW~l~~ 284 (299)
+.+++...+.+.||.++.
T Consensus 273 ~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEEETTSEEEEEEEEC
T ss_pred cEEEEEeCCCcEEEeecCC
Confidence 555555888999999974
No 183
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.24 E-value=3.3e+02 Score=22.48 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCcccEEEEcccchhhhcCCCCCCCCCC-cceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCC--ceecCCCCCccccC
Q 042133 123 GGVGKAYLCNPLRKEVLELPQATTGGSW-LDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSS--WREISSVPPEDLDN 198 (299)
Q Consensus 123 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~--W~~~~~~~~~~~~~ 198 (299)
..+..+.+||..+++....-........ .....+.+.+..+.+ ++... +..+.+++.+... -+...... .
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~sgs~D~~v~~wd~~~~~~~~~~~~~h~-----~ 250 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM-FISGSCDTTVRLWDLRITSRAVRTYHGHE-----G 250 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE-EEEEETTSCEEEEETTTTCCCCEEECCCS-----S
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE-EEEEECCCeEEEEECCCCCcceEEECCcC-----C
Confidence 4477899999988875432211100111 112445554433332 22222 7888999886421 12211100 0
Q ss_pred CCCceEE--CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeee-eCCCCCCCCCccccceeEEE--ECCeEEEEEeC
Q 042133 199 MSNGVSA--YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKR-TPTPDFGSLSYEHERFVMIN--LKGCLAIVILT 273 (299)
Q Consensus 199 ~~~~v~~--~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~ 273 (299)
.-..+.+ +|.....+..+. .|-.+|+.+.+... +......... ....-..+. .+|++.+++..
T Consensus 251 ~v~~v~~~p~~~~l~s~s~D~-----------~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSDDG-----------TCRLFDMRTGHQLQVYNREPDRNDN-ELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp CCCEEEECTTSSEEEEECSSS-----------CEEEEETTTTEEEEEECCCCSSSCC-SSCSCSEEEECSSSSEEEEECT
T ss_pred CeEEEEEecCCCeEEEEcCCC-----------eEEEEECCCCcEEEEeccccccccc-ccCceEEEEECCCCCEEEEEEC
Confidence 0112333 454433333332 58899999875433 3333221110 000112333 78888888888
Q ss_pred CCeEEEEEec
Q 042133 274 PEDIEIWMMK 283 (299)
Q Consensus 274 ~~~~~iW~l~ 283 (299)
.+.+.||.+.
T Consensus 319 dg~i~vwd~~ 328 (380)
T 3iz6_a 319 NGDCYVWDTL 328 (380)
T ss_dssp TSCEEEEETT
T ss_pred CCCEEEEECC
Confidence 8899999764
No 184
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=22.08 E-value=1.9e+02 Score=23.13 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=17.7
Q ss_pred eeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCC
Q 042133 208 DMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTP 246 (299)
Q Consensus 208 ~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P 246 (299)
.+||...... .|..+|.. .+...+..|
T Consensus 58 ~l~~~d~~~~-----------~i~~~~~~-g~~~~~~~~ 84 (305)
T 3dr2_A 58 TLVWSDLVGR-----------RVLGWRED-GTVDVLLDA 84 (305)
T ss_dssp EEEEEETTTT-----------EEEEEETT-SCEEEEEES
T ss_pred EEEEEECCCC-----------EEEEEeCC-CCEEEEeCC
Confidence 4888877665 68888884 445555433
No 185
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=21.63 E-value=4.1e+02 Score=23.30 Aligned_cols=133 Identities=11% Similarity=-0.070 Sum_probs=67.3
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceecCCCCCccccCCCCce
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREISSVPPEDLDNMSNGV 203 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v 203 (299)
+..+.++|..+++... .... ........+.+++.. . .++... +..+.+|+..++.=...-..... ..-..+
T Consensus 466 d~~i~~~~~~~~~~~~-~~~~--~~~~~v~~~~~s~~g-~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~---~~v~~~ 537 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF-DLKT--PLRAKPSYISISPSE-T-YIAAGDVMGKILLYDLQSREVKTSRWAFRT---SKINAI 537 (615)
T ss_dssp TSCEEEEETTEEEEEE-ECSS--CCSSCEEEEEECTTS-S-EEEEEETTSCEEEEETTTTEEEECCSCCCS---SCEEEE
T ss_pred CCeEEEEECCCccccc-cccC--CccCceEEEEECCCC-C-EEEEcCCCCeEEEeeCCCCcceeEeecCCC---CceeEE
Confidence 6778899988876532 1111 111122556665543 2 222222 67899999877543211100000 001123
Q ss_pred EE------------CCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEE
Q 042133 204 SA------------YGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAI 269 (299)
Q Consensus 204 ~~------------~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~ 269 (299)
.+ +|.+...+..+. .|..+|+.+..-....+..+.. .-..|. .+|+ .+
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~h~~------~v~~l~~s~~~~-l~ 599 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDT-----------NIFIYSVKRPMKIIKALNAHKD------GVNNLLWETPST-LV 599 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTS-----------CEEEEESSCTTCCEEETTSSTT------CEEEEEEEETTE-EE
T ss_pred EEcCccccccccccCCCEEEEEcCCC-----------cEEEEECCCCceechhhhcCcc------ceEEEEEcCCCC-eE
Confidence 33 555444444433 5889999875211112222211 112333 7888 44
Q ss_pred EEeCCCeEEEEEec
Q 042133 270 VILTPEDIEIWMMK 283 (299)
Q Consensus 270 ~~~~~~~~~iW~l~ 283 (299)
.+...+.+.||.++
T Consensus 600 s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 600 SSGADACIKRWNVV 613 (615)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EecCCceEEEEeee
Confidence 45588899999987
No 186
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=20.87 E-value=3.7e+02 Score=22.47 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=32.7
Q ss_pred EEEEEECCCCee-eeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEF-KRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.|..+|+.+.+. ..+..|.+.. .-..+. .+|++.+++...+.+.||.++.
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHG------AVSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGC------CEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred eEEEEeCCCCeeeEEEccCCCCC------ceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 699999987654 3344442221 112333 5788888777888999998864
No 187
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=20.57 E-value=3.4e+02 Score=21.87 Aligned_cols=150 Identities=9% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEeCceEEEEEcCCCCceec
Q 042133 109 ISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREI 188 (299)
Q Consensus 109 ~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~vyss~~~~W~~~ 188 (299)
+.-+-+|-.++.. .....+.++|..+++....-... ......+.+.+ .+.+-+..-.+..+.+|+..++ +.+
T Consensus 128 ~~~spdg~~l~~g-~~dg~v~i~~~~~~~~~~~~~~~----~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~--~~~ 199 (321)
T 3ow8_A 128 LAFSPDSQYLATG-THVGKVNIFGVESGKKEYSLDTR----GKFILSIAYSP-DGKYLASGAIDGIINIFDIATG--KLL 199 (321)
T ss_dssp EEECTTSSEEEEE-CTTSEEEEEETTTCSEEEEEECS----SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT--EEE
T ss_pred EEECCCCCEEEEE-cCCCcEEEEEcCCCceeEEecCC----CceEEEEEECC-CCCEEEEEcCCCeEEEEECCCC--cEE
Q ss_pred CCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCe
Q 042133 189 SSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGC 266 (299)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~ 266 (299)
.....+......-...-+|.+...+..+. .|..+|+.+.+....-......- ..+. .+|+
T Consensus 200 ~~~~~h~~~v~~l~~spd~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~h~~~v-------~~~~~sp~~~ 261 (321)
T 3ow8_A 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDG-----------YIKIYDVQHANLAGTLSGHASWV-------LNVAFCPDDT 261 (321)
T ss_dssp EEECCCSSCCCEEEECTTSCEEEEECTTS-----------CEEEEETTTCCEEEEECCCSSCE-------EEEEECTTSS
T ss_pred EEEcccCCceeEEEEcCCCCEEEEEcCCC-----------eEEEEECCCcceeEEEcCCCCce-------EEEEECCCCC
Q ss_pred EEEEEeCCCeEEEEEecc
Q 042133 267 LAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 267 L~~~~~~~~~~~iW~l~~ 284 (299)
..+.+...+.+.||.++.
T Consensus 262 ~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp EEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCcEEEEeCCC
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=20.51 E-value=3.1e+02 Score=21.50 Aligned_cols=115 Identities=8% Similarity=-0.034 Sum_probs=54.6
Q ss_pred cccEEEEcccchhhhcCCCCCCCCCCcceEEEeEeCCCCCEEEEEEe-CceEEEEEcCCCCceec-CCCCCccccCCCCc
Q 042133 125 VGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVF-GKRSEIYTLGTSSWREI-SSVPPEDLDNMSNG 202 (299)
Q Consensus 125 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~vyss~~~~W~~~-~~~~~~~~~~~~~~ 202 (299)
...++++||.+++...+..+..........++.+|+..+ +++... ...+.+|+.. +..+.+ ..............
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~ 121 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCND 121 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCE
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcC
Confidence 457888888888766443211000111225666765422 333333 4578888887 666544 32111111111234
Q ss_pred eEE--CCeeEEeecCCCc----cCccCCCCccEEEEEECCCCeeeee
Q 042133 203 VSA--YGDMHWADDDHFS----FGQRKGVDNCVIISFDFKKEEFKRT 243 (299)
Q Consensus 203 v~~--~G~~yw~~~~~~~----~~~~~~~~~~~il~fD~~~~~~~~i 243 (299)
+.+ +|.+|+....... +..........|..+|.+ .++..+
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 444 5777765543200 000001112468889987 555433
No 189
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=20.37 E-value=3.3e+02 Score=21.72 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=29.4
Q ss_pred EEEEEECCCCeeeeeCCCCCCCCCccccceeEEE--ECCeEEEEEeCCCeEEEEEecc
Q 042133 229 VIISFDFKKEEFKRTPTPDFGSLSYEHERFVMIN--LKGCLAIVILTPEDIEIWMMKD 284 (299)
Q Consensus 229 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~l~--~~g~L~~~~~~~~~~~iW~l~~ 284 (299)
.|..+|+.+.+.... +..+.. .-..+. .+|++.+++...+.+.||.++.
T Consensus 55 ~i~vwd~~~~~~~~~-~~~h~~------~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 55 SASVWYSLNGERLGT-LDGHTG------TIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CEEEEETTTCCEEEE-ECCCSS------CEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEeCCCchhhhh-hhhcCC------cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 488888887654322 111111 112333 5677777777888999998764
Done!