BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042137
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 12 GQPNGGEIDQHSGYVTVDAKAGRALFYYFVESAN------------------SSTEPLSL 53
GQPNG + GYVT+D GRAL+Y+F E+ SS ++
Sbjct: 15 GQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLGAM 74
Query: 54 AELGPYPVNTDGKCLSHSKYARNSVKYFIMCSSWSLQQELDFPTRIHHLTMT--RTAEDS 111
ELG + V+T+G+ L ++YA N + S + L+M + A+D+
Sbjct: 75 QELGAFRVHTNGESLLLNEYAWNKAANILFAES-PAGVGFSYSNTSSDLSMGDDKMAQDT 133
Query: 112 YTLLVNWFERLPEYRAREFFLAGESYAGHFVPQACSI 148
YT LV WFER P Y REF++AGES GHF+PQ +
Sbjct: 134 YTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQV 168
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 12 GQPNGGEIDQHSGYVTVDAKAGRALFYYFVESA-NSSTEPLSL----------------A 54
GQP + D +SGY+TVD AGR+LFY E+ ++ PL L
Sbjct: 16 GQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 74
Query: 55 ELGPYPVNTDGKCLSHSKYARNSVKYFIMCSSWSLQ--QELDFPTRIHHLTMTRTAEDSY 112
ELG + V G L ++Y N V + S + + + I+ RTA DSY
Sbjct: 75 ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 134
Query: 113 TLLVNWFERLPEYRAREFFLAGESYAGHFVPQ 144
L WFER P Y+ R+F++AGESYAGH+VP+
Sbjct: 135 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPE 166
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 12 GQPNGGEIDQHSGYVTVDAKAGRALFYYFVESA-NSSTEPLSL----------------A 54
GQP + D +SGY+TVD AGR+LFY E+ ++ PL L
Sbjct: 11 GQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 69
Query: 55 ELGPYPVNTDGKCLSHSKYARNSVKYFIMCSSWSLQ--QELDFPTRIHHLTMTRTAEDSY 112
ELG + V G L ++Y N V + S + + + I+ RTA DSY
Sbjct: 70 ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 129
Query: 113 TLLVNWFERLPEYRAREFFLAGESYAGHFVPQ 144
L WFER P Y+ R+F++AGESYAGH+VP+
Sbjct: 130 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPE 161
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 12 GQPNGGEIDQHSGYVTVDAKAGRALFYYFVESA-NSSTEPLSL----------------A 54
GQP + D +SGY+TVD AGR+LFY E+ ++ PL L
Sbjct: 12 GQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 70
Query: 55 ELGPYPVNTDGKCLSHSKYARNSVKYFIMCSSWSLQ--QELDFPTRIHHLTMTRTAEDSY 112
ELG + V G L ++Y N V + S + + + I+ RTA DSY
Sbjct: 71 ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 130
Query: 113 TLLVNWFERLPEYRAREFFLAGESYAGHFVPQ 144
L WFER P Y+ R+F++AGESYAGH+VP+
Sbjct: 131 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPE 162
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 12 GQPNGGEIDQHSGYVTVDAKAGRALFYYFVESA-NSSTEPLSL----------------A 54
GQP + D +SGY+TVD AGR+LFY E+ ++ PL L
Sbjct: 16 GQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 74
Query: 55 ELGPYPVNTDGKCLSHSKYARNSVKYFIMCSSWSLQ--QELDFPTRIHHLTMTRTAEDSY 112
ELG + V G L ++Y N V + S + + + I+ RTA DSY
Sbjct: 75 ELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 134
Query: 113 TLLVNWFERLPEYRAREFFLAGESYAGHFVPQ 144
L WFER P Y+ R+F++AGESYAGH+VP+
Sbjct: 135 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPE 166
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 153 QQDFQSNFH-------QFKRPSCDISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSD 205
++D Q H + +C +++ D+P ++LPI +EL+ G+R+++ SGD+D
Sbjct: 16 RRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTD 75
Query: 206 GRVPTTSKRHSINKLGALVNTTWYPWHSQGEMESF 240
VP T+ R+SI LG T+WYPW+ E+ +
Sbjct: 76 AVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGW 110
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 153 QQDFQSNFH-------QFKRPSCDISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSD 205
++D Q H + +C +++ D+P ++LPI +EL+ G+R+++ SGD+D
Sbjct: 16 RRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTD 75
Query: 206 GRVPTTSKRHSINKLGALVNTTWYPWHSQGEMESF 240
VP T+ R+SI LG T+WYPW+ E+ +
Sbjct: 76 AVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGW 110
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 153 QQDFQSNFH-------QFKRPSCDISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSD 205
++D Q H + +C +++ D+P ++LPI +EL+ G+R+++ SGD+D
Sbjct: 16 RRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTD 75
Query: 206 GRVPTTSKRHSINKLGALVNTTWYPWHSQGEMESF 240
VP T+ R+SI LG T+WYPW+ E+ +
Sbjct: 76 AVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGW 110
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 153 QQDFQSNFH-------QFKRPSCDISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSD 205
++D Q H + +C +++ D+P ++LPI +EL+ G+R+++ SGD+D
Sbjct: 18 RRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTD 77
Query: 206 GRVPTTSKRHSINKLGALVNTTWYPWHSQGEMESF 240
VP T+ R+SI LG T+WYPW+ E+ +
Sbjct: 78 AVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGW 112
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 150 PSIQQDFQSNFH---QFKRPSCDISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSDG 206
P +Q +N ++ C ++ D + +LP+ +EL++ G+RV++ SGD+D
Sbjct: 19 PEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWVYSGDTDS 78
Query: 207 RVPTTSKRHSINKLGALVNTTWYPWH 232
VP +S R S+ L V T+WYPW+
Sbjct: 79 VVPVSSTRRSLAALELPVKTSWYPWY 104
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 21 QHSGYVTVDAKAGRALFYYFVESAN-----------------SSTEPLSLAELGPYPVNT 63
Q+SGY+ + L Y+FVES SS + L L E GP+ V
Sbjct: 23 QYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGL-LTEHGPFLVQP 79
Query: 64 DGKCLSHSKYARNSVKYFIMCSSWSLQQELDFPTRIHHLTMTRTAEDSYTLLVNWFERLP 123
DG L ++ Y+ N + + S + + + T A+ ++ L ++F P
Sbjct: 80 DGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFP 139
Query: 124 EYRAREFFLAGESYAGHFVPQACSI---DPSIQ 153
EY+ + FL GESYAG ++P + DPS+
Sbjct: 140 EYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMN 172
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 21 QHSGYVTVDAKAGRALFYYFVESAN-----------------SSTEPLSLAELGPYPVNT 63
Q+SGY+ + + L Y+FVES SS + L L E GP+ V
Sbjct: 21 QYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGL-LTEHGPFLVQP 77
Query: 64 DGKCLSHSKYARNSVKYFIMCSSWSLQQELDFPTRIHHLTMTRTAEDSYTLLVNWFERLP 123
DG L ++ Y+ N + + S + + + T A+ ++ L ++F P
Sbjct: 78 DGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFP 137
Query: 124 EYRAREFFLAGESYAGHFVPQACSI---DPSIQ 153
EY+ + FL GESYAG ++P + DPS+
Sbjct: 138 EYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMN 170
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 19 IDQHSGYVTVDAKAGRALFYYFVESANSSTEPLSL---------------AELGPYPVNT 63
+ Q++GY+ V+ + F+ F + + +P+ L ELGP +
Sbjct: 14 VTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIGP 73
Query: 64 DGKCLSHSKYARNSVKYFIMCSSWSLQQELDFPTRIHHLTMTRTAEDSYTLLVNWFERLP 123
D K + + Y+ NS I + + +D Y L +F++ P
Sbjct: 74 DLKPIGN-PYSWNSNATVIFLDQ-PVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFP 131
Query: 124 EY--RAREFFLAGESYAGHFVP 143
EY + ++F +AGESYAGH++P
Sbjct: 132 EYVNKGQDFHIAGESYAGHYIP 153
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 29 DAKAGRALFYYFVESANSSTEPLSLAELGPYPVNTDGKC-LSHSKYARNSVKYFI---MC 84
+ R L + S+ +L E GP+ VN+DGK L+ + FI
Sbjct: 62 NGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTG 121
Query: 85 SSWSLQQELDFPTRIHHLTMTRTAEDS----YTLLVNWFERLPEYRAREFFLAGESYAGH 140
+ +S++Q D +I ED L N+F+ PE R+ L+GESYAG
Sbjct: 122 TGFSVEQNKD-EGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQ 180
Query: 141 FVP 143
++P
Sbjct: 181 YIP 183
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 19 IDQHSGYVTVDAKAGRALFYYFVESANSSTEPLSL---------------AELGPYPVNT 63
+ Q++GY+ V+ + F+ F + + +P+ L LGP +
Sbjct: 14 VTQYTGYLDVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIGP 73
Query: 64 DGKCLSHSKYARNSVKYFIMCSSWSLQQELDFPTRIHHLTMTRTAEDSYTLLVNWFERLP 123
D K + + Y+ NS I + + +D Y L +F++ P
Sbjct: 74 DLKPIGN-PYSWNSNATVIFLDQ-PVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFP 131
Query: 124 EY--RAREFFLAGESYAGHFVP 143
EY + ++F +AG SYAGH++P
Sbjct: 132 EYVNKGQDFHIAGASYAGHYIP 153
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 170 ISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDS 204
I+VSDTLK+S P +QEL R GI+V + +GD+
Sbjct: 158 IAVSDTLKESAK---PAVQELKRMGIKVGMITGDN 189
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 170 ISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDS 204
I+VSDTLK+S P +QEL R GI+V + +GD+
Sbjct: 158 IAVSDTLKESAK---PAVQELKRMGIKVGMITGDN 189
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 170 ISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSDGRVPTTSKRHSINKLGALVNTTWY 229
I+VSDTLK+S P +QEL R GI+V + +GD+ S+ +++ LV
Sbjct: 452 IAVSDTLKESAK---PAVQELKRMGIKVGMITGDNWRSAEAISRELNLD----LVIAEVL 504
Query: 230 PWHSQGEMESFHLKQ 244
P E++ K+
Sbjct: 505 PHQKSEEVKKLQAKE 519
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 170 ISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDSDGRVPTTSKRHSINKLGALVNTTWY 229
I+VSDTLK+S P +QEL R GI+V + +GD+ S+ +++ LV
Sbjct: 530 IAVSDTLKESAK---PAVQELKRMGIKVGMITGDNWRSAEAISRELNLD----LVIAEVL 582
Query: 230 PWHSQGEMESFHLKQ 244
P E++ K+
Sbjct: 583 PHQKSEEVKKLQAKE 597
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 170 ISVSDTLKDSPLTVLPIIQELMRCGIRVYICSGDS 204
I+VSDTLK+S P +QEL R GI+V +GD+
Sbjct: 138 IAVSDTLKESAK---PAVQELKRXGIKVGXITGDN 169
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 139 GHFVPQACSIDPSIQQDFQSNFHQFKRPSCDISVSDTLKDSPLTVLPIIQELMRCGIRVY 198
G + C S+ + + +PS + S+S K P++ E ++C +Y
Sbjct: 67 GESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELY 126
Query: 199 ICSGDSDGRVPTTSKRHSINKLGALVNTTWYPWHSQGEMESF 240
G + T S + + ++ L+N +W + G +++F
Sbjct: 127 ------KGSLETVSFQTAADQARELIN-SWVETQTNGVIKNF 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,074,205
Number of Sequences: 62578
Number of extensions: 320400
Number of successful extensions: 683
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 21
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)