Your job contains 1 sequence.
>042138
MTLSATFNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF
EFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQ
DVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGC
QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPL
RFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042138
(295 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2826052 - symbol:LpxC3 "lipid X C3" species:37... 550 3.8e-53 1
TAIR|locus:2826102 - symbol:LpxC1 "lipid X C1" species:37... 550 3.8e-53 1
TIGR_CMR|SPO_1205 - symbol:SPO_1205 "UDP-3-0-acyl N-acety... 291 1.1e-25 1
TIGR_CMR|GSU_0731 - symbol:GSU_0731 "UDP-3-0-acyl N-acety... 286 3.6e-25 1
TIGR_CMR|SO_4214 - symbol:SO_4214 "UDP-3-0-acyl N-acetylg... 278 2.6e-24 1
TIGR_CMR|CBU_0142 - symbol:CBU_0142 "UDP-3-0-acyl N-acety... 272 1.1e-23 1
TIGR_CMR|CPS_4457 - symbol:CPS_4457 "UDP-3-0-acyl N-acety... 268 2.9e-23 1
UNIPROTKB|P0A725 - symbol:lpxC species:83333 "Escherichia... 255 7.0e-22 1
TIGR_CMR|CJE_0127 - symbol:CJE_0127 "UDP-3-0-acyl N-acety... 249 3.0e-21 1
UNIPROTKB|Q9KPH2 - symbol:lpxC "UDP-3-O-[3-hydroxymyristo... 248 3.9e-21 1
TIGR_CMR|VC_2396 - symbol:VC_2396 "UDP-3-O-3-hydroxymyris... 248 3.9e-21 1
>TAIR|locus:2826052 [details] [associations]
symbol:LpxC3 "lipid X C3" species:3702 "Arabidopsis
thaliana" [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008759
"UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
activity" evidence=IEA;ISS] [GO:0009245 "lipid A biosynthetic
process" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR004463 InterPro:IPR011334 InterPro:IPR015870
Pfam:PF03331 EMBL:CP002684 GO:GO:0009245 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC004133 UniPathway:UPA00359
RefSeq:NP_001117349.4 RefSeq:NP_001185090.1 RefSeq:NP_173874.2
UniGene:At.75084 UniGene:At.75619 GeneID:10723064 GeneID:839084
GeneID:839094 KEGG:ath:AT1G24793 KEGG:ath:AT1G25054
KEGG:ath:AT1G25145 eggNOG:COG0774 KO:K02535 GO:GO:0008759
Gene3D:3.30.1700.10 Gene3D:3.30.230.20 TIGRFAMs:TIGR00325
IPI:IPI00938803 PIR:D86380 RefSeq:NP_173878.6 RefSeq:NP_173884.5
UniGene:At.48022 UniGene:At.66884 UniGene:At.70223 UniGene:At.74441
ProteinModelPortal:P0DKB7 GeneID:839088 KEGG:ath:AT1G24880
TAIR:At1g24880 PhylomeDB:P0DKB7 Uniprot:P0DKB7
Length = 326
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 108/211 (51%), Positives = 153/211 (72%)
Query: 88 VQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQD-VEAEVPI-FDGSASAWAEAIEQV-- 143
++ + V++ +E++ D+ ++E+ ++ V+A + + + + E++E++
Sbjct: 114 LEAKGVDNCRIQIESESSDDREVEVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVA 173
Query: 144 GLKRP-WI-REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSR 201
+ +P ++ + D+FVAAFP+ + +I+ GIDFPQVPAIGCQWFS P+ + +A IASSR
Sbjct: 174 HVNKPVYVCKNDTFVAAFPALETRITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSR 233
Query: 202 TFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLF 261
TFC+YEEVERM AGLIKGGSLDNAIVCSA GW+NPPLRF DE CRHK+LD +GDLSL
Sbjct: 234 TFCVYEEVERMREAGLIKGGSLDNAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLV 293
Query: 262 ARNGSQGLPVAHMVAFKGGHALHVDFARRLS 292
+R G+ GLPVAH+VA+K GHALH D AR L+
Sbjct: 294 SRGGNGGLPVAHIVAYKAGHALHTDLARHLT 324
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 90/139 (64%), Positives = 112/139 (80%)
Query: 7 FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
+++ SS +S +GRLQQTLAG +E GK+LHSG STV+L PE AG GR+FEFRSR
Sbjct: 21 YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80
Query: 67 IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I + +DD++VE V
Sbjct: 81 IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138
Query: 127 PIFDGSASAWAEAIEQVGL 145
PIFDGSA W +AI+ VG+
Sbjct: 139 PIFDGSAKEWVDAIQGVGI 157
>TAIR|locus:2826102 [details] [associations]
symbol:LpxC1 "lipid X C1" species:3702 "Arabidopsis
thaliana" [GO:0008759 "UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase activity" evidence=IEA] [GO:0009245
"lipid A biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:2001289 "lipid X metabolic process" evidence=IMP]
InterPro:IPR004463 InterPro:IPR011334 InterPro:IPR015870
Pfam:PF03331 EMBL:CP002684 GO:GO:0009245 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC004133 UniPathway:UPA00359 EMBL:AY094436
EMBL:AK221709 EMBL:AK221813 IPI:IPI00846738 IPI:IPI00896251
IPI:IPI01019559 RefSeq:NP_001117349.4 RefSeq:NP_001154365.1
RefSeq:NP_001185090.1 RefSeq:NP_173874.2 UniGene:At.75084
UniGene:At.75619 ProteinModelPortal:F4IAT8
EnsemblPlants:AT1G24793.2 GeneID:10723064 GeneID:839084
GeneID:839094 KEGG:ath:AT1G24793 KEGG:ath:AT1G25054
KEGG:ath:AT1G25145 TAIR:At1g24793 eggNOG:COG0774 KO:K02535
PhylomeDB:F4IAT8 GO:GO:0008759 Gene3D:3.30.1700.10
Gene3D:3.30.230.20 TIGRFAMs:TIGR00325 Uniprot:F4IAT8
Length = 326
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 108/211 (51%), Positives = 153/211 (72%)
Query: 88 VQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQD-VEAEVPI-FDGSASAWAEAIEQV-- 143
++ + V++ +E++ D+ ++E+ ++ V+A + + + + E++E++
Sbjct: 114 LEAKGVDNCRIQIESESSDDREVEVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVA 173
Query: 144 GLKRP-WI-REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSR 201
+ +P ++ + D+FVAAFP+ + +I+ GIDFPQVPAIGCQWFS P+ + +A IASSR
Sbjct: 174 HVNKPVYVCKNDTFVAAFPALETRITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSR 233
Query: 202 TFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLF 261
TFC+YEEVERM AGLIKGGSLDNAIVCSA GW+NPPLRF DE CRHK+LD +GDLSL
Sbjct: 234 TFCVYEEVERMREAGLIKGGSLDNAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLV 293
Query: 262 ARNGSQGLPVAHMVAFKGGHALHVDFARRLS 292
+R G+ GLPVAH+VA+K GHALH D AR L+
Sbjct: 294 SRGGNGGLPVAHIVAYKAGHALHTDLARHLT 324
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 90/139 (64%), Positives = 112/139 (80%)
Query: 7 FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
+++ SS +S +GRLQQTLAG +E GK+LHSG STV+L PE AG GR+FEFRSR
Sbjct: 21 YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80
Query: 67 IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I + +DD++VE V
Sbjct: 81 IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138
Query: 127 PIFDGSASAWAEAIEQVGL 145
PIFDGSA W +AI+ VG+
Sbjct: 139 PIFDGSAKEWVDAIQGVGI 157
>TIGR_CMR|SPO_1205 [details] [associations]
symbol:SPO_1205 "UDP-3-0-acyl N-acetylglucosamine
deacetylase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008759
"UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
activity" evidence=ISS] [GO:0009245 "lipid A biosynthetic process"
evidence=ISS] InterPro:IPR004463 InterPro:IPR011334
InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0009245 InterPro:IPR020568
SUPFAM:SSF54211 UniPathway:UPA00359 KO:K02535 GO:GO:0008759
Gene3D:3.30.1700.10 Gene3D:3.30.230.20 TIGRFAMs:TIGR00325
HOGENOM:HOG000256663 OMA:KAYKSGH ProtClustDB:PRK13186
RefSeq:YP_166452.1 ProteinModelPortal:Q5LU53 GeneID:3193410
KEGG:sil:SPO1205 PATRIC:23375721 Uniprot:Q5LU53
Length = 306
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 97/273 (35%), Positives = 127/273 (46%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF-----EFRSRLIPASIDFAKESP 78
+Q TL + G LH G + L P AG G +F E +IPA D +P
Sbjct: 1 MQHTLKTSVTFQGIGLHGGKPVRMTLRPAAAGHGIWFKRTDIEIGDAMIPAIYDLVDRTP 60
Query: 79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNM---VADDQDVEAEVPIFD-GSA 133
LCT L GV + TVEH+++AL GV N IE+ + D VE I G
Sbjct: 61 LCTRLVNAAGVSVSTVEHIMAALAGCGVHNALIELDGPEVPIMDGSSVEFVRGIMARGVR 120
Query: 134 SAWAEAIEQVGLKRPWIREDSFVAAF-PSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTC 192
A + LK + +D A PS ++I + IDF AIG Q G+
Sbjct: 121 QQAAPVLAYEVLKAVTVEKDGARATLMPSDGLEIEFTIDFEDA-AIGRQTRRMNMRNGS- 178
Query: 193 YAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDEPCRHKL 251
+A ++ SRTFC +VE M GL GG+L+NA+V E L P LR DE RHK+
Sbjct: 179 FARELSDSRTFCRRSDVEAMRANGLALGGTLENAVVVDGDE-ILTPGGLRHTDEAVRHKM 237
Query: 252 LDFVGDLSLFARNGSQGLPVAHM-VAFKGGHAL 283
LD +GDL + G P+ V K GHAL
Sbjct: 238 LDALGDLYM------AGGPILGCYVGDKAGHAL 264
>TIGR_CMR|GSU_0731 [details] [associations]
symbol:GSU_0731 "UDP-3-0-acyl N-acetylglucosamine
deacetylase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0008759 "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase activity" evidence=ISS] [GO:0009245 "lipid A
biosynthetic process" evidence=ISS] InterPro:IPR004463
InterPro:IPR011334 InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009245
InterPro:IPR020568 SUPFAM:SSF54211 UniPathway:UPA00359 KO:K02535
GO:GO:0008759 Gene3D:3.30.1700.10 Gene3D:3.30.230.20
TIGRFAMs:TIGR00325 HOGENOM:HOG000256663 ProtClustDB:PRK13186
RefSeq:NP_951788.1 ProteinModelPortal:Q74F78 GeneID:2685545
KEGG:gsu:GSU0731 PATRIC:22024225 OMA:NTLDITM
BioCyc:GSUL243231:GH27-712-MONOMER Uniprot:Q74F78
Length = 275
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 89/251 (35%), Positives = 125/251 (49%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCP--EFAGKGRYFEFRSRLIPASIDFAKESPLCTT 82
Q T+ + +G LH+G T+ P EF G F ++ +LIPA D ++ L T
Sbjct: 5 QTTINRIFKLSGIGLHTGREVTLEFIPRREF---GIAFVYQGQLIPARYDMVADTRLSTQ 61
Query: 83 LFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSA-----SAWA 137
+ DG + T+EHL++A G+ NC + I EVPI DGSA W
Sbjct: 62 IAADGKSVSTIEHLMAAFYYSGITNCLVYIDG---------PEVPIMDGSAWEFYHEIWR 112
Query: 138 EAIEQ-----VGLK--RPW--IREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPL 188
+ + V LK RP D++V P + I+ I+F P +G Q +
Sbjct: 113 AGVYEFPETGVYLKVLRPVEVSHNDAWVRVKPLNTLDITMTIEFR--PPVGKQRKRLMDV 170
Query: 189 EGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDEPC 247
E A+ I +SRTF ++EE+E + AGL KGGSLDNA+V E LNP LR+ E
Sbjct: 171 EN---AVSIINSRTFVLHEEIEAIRKAGLAKGGSLDNAVVIGGEE-ILNPNGLRYKKELV 226
Query: 248 RHKLLDFVGDL 258
HK+LD +GDL
Sbjct: 227 NHKILDLIGDL 237
>TIGR_CMR|SO_4214 [details] [associations]
symbol:SO_4214 "UDP-3-0-acyl N-acetylglucosamine
deacetylase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008759 "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase activity" evidence=ISS] [GO:0009245 "lipid A
biosynthetic process" evidence=ISS] InterPro:IPR004463
InterPro:IPR011334 InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0009245
InterPro:IPR020568 SUPFAM:SSF54211 UniPathway:UPA00359
eggNOG:COG0774 KO:K02535 GO:GO:0008759 Gene3D:3.30.1700.10
Gene3D:3.30.230.20 TIGRFAMs:TIGR00325 HOGENOM:HOG000256663
OMA:KAYKSGH ProtClustDB:PRK13186 RefSeq:NP_719742.1
ProteinModelPortal:Q8E9Q2 SMR:Q8E9Q2 GeneID:1171818
KEGG:son:SO_4214 PATRIC:23528066 Uniprot:Q8E9Q2
Length = 306
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 90/287 (31%), Positives = 135/287 (47%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKG----RYFEFRSRLIPASIDFAKESPLC 80
Q+T+ ++ TG LHSGN T+ + P G R + IPA + +E+ +C
Sbjct: 4 QRTVQKMVKATGVGLHSGNKVTLSIMPAPVNTGIVLVRTDMSPAVAIPAKAEQVRETTMC 63
Query: 81 TTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
T L D G++I T+EHL +AL G+DN IE+ D E+PI DGSAS +
Sbjct: 64 TALVNDEGIRISTIEHLFAALAGLGIDNAVIEV--------DAP-EIPIMDGSASPFVFL 114
Query: 140 IEQVGLK------------RPWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
++ G+K RP ED + P + ++++ IDF Q
Sbjct: 115 LQSAGIKEQSAPKKYLKIKRPVRVEDGDKWAELKPFKGFRVNFKIDFAHPEIARSQQHVV 174
Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPD 244
+ + I+ +RTF ++E + L GGS++NA+V LNP LR+ D
Sbjct: 175 MDFSTSAFVKDISRARTFGFMRDIEYLRANNLALGGSMENAVVLDEYRV-LNPDGLRYED 233
Query: 245 EPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
E +HK+LD GDL + A + G A+K GHAL+ R L
Sbjct: 234 EFVKHKILDAFGDLYV-AGHAILG----EFTAYKTGHALNNQLVRAL 275
>TIGR_CMR|CBU_0142 [details] [associations]
symbol:CBU_0142 "UDP-3-0-acyl N-acetylglucosamine
deacetylase" species:227377 "Coxiella burnetii RSA 493" [GO:0008759
"UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
activity" evidence=ISS] [GO:0009245 "lipid A biosynthetic process"
evidence=ISS] InterPro:IPR004463 InterPro:IPR011334
InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009245 InterPro:IPR020568
SUPFAM:SSF54211 UniPathway:UPA00359 eggNOG:COG0774 KO:K02535
GO:GO:0008759 Gene3D:3.30.1700.10 Gene3D:3.30.230.20
TIGRFAMs:TIGR00325 HOGENOM:HOG000256663 OMA:KAYKSGH
ProtClustDB:PRK13186 RefSeq:NP_819192.1 ProteinModelPortal:Q83F11
SMR:Q83F11 GeneID:1208013 KEGG:cbu:CBU_0142 PATRIC:17928967
BioCyc:CBUR227377:GJ7S-144-MONOMER Uniprot:Q83F11
Length = 303
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 90/286 (31%), Positives = 130/286 (45%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
Q+TL + TG +H+G + L P G F R+ L IPA +++ ++ L
Sbjct: 4 QRTLKNVVRATGVGVHTGEKVYLTLRPAPPNTGIIF-CRTDLDPVVQIPARVNYIGDTSL 62
Query: 80 CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
T L K V+I TVEHLLSAL GVDN I++ E+PI DGSA +
Sbjct: 63 STCLTKGDVRIATVEHLLSALAGVGVDNLYIDL---------TSPELPIMDGSAGPFVFL 113
Query: 140 IEQVGLK-----RPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
I+ G++ + +IR D V P +IS+GIDF +T
Sbjct: 114 IQSAGIEEQNAPKEFIRIKQRVKIEEADKSVMVEPYNGFKISFGIDFDHPLFNEHNQNAT 173
Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDE 245
T Y ++ +RTF + E + L G SLDNA+V + LR+PDE
Sbjct: 174 LDFSSTSYVKEVSRARTFGFLSDYEFIRKNNLALGASLDNALVLDEYKILNQDGLRYPDE 233
Query: 246 PCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
+HK+LD +GDL L R+ + K GH L+ ++L
Sbjct: 234 FVKHKILDVIGDLYLLGRS-----LIGSFSGVKSGHTLNSQLLKQL 274
>TIGR_CMR|CPS_4457 [details] [associations]
symbol:CPS_4457 "UDP-3-0-acyl N-acetylglucosamine
deacetylase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0008759 "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase activity" evidence=ISS] [GO:0009245 "lipid A
biosynthetic process" evidence=ISS] InterPro:IPR004463
InterPro:IPR011334 InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009245
InterPro:IPR020568 SUPFAM:SSF54211 UniPathway:UPA00359
eggNOG:COG0774 KO:K02535 GO:GO:0008759 Gene3D:3.30.1700.10
Gene3D:3.30.230.20 TIGRFAMs:TIGR00325 HOGENOM:HOG000256663
OMA:KAYKSGH ProtClustDB:PRK13186 RefSeq:YP_271105.1
ProteinModelPortal:Q47VR7 SMR:Q47VR7 STRING:Q47VR7 GeneID:3519253
KEGG:cps:CPS_4457 PATRIC:21471751
BioCyc:CPSY167879:GI48-4466-MONOMER Uniprot:Q47VR7
Length = 305
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 94/283 (33%), Positives = 138/283 (48%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIP-----ASIDFAKESPL 79
Q+TL + G LH G V L P A G F R L P AS + E+ L
Sbjct: 4 QRTLKTSVSTVGVGLHKGEKVQVTLRPAPANTGIVFR-RVDLDPVVDIKASPEAVGETTL 62
Query: 80 CTTLFKDG-VQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAE 138
CT L + V++ TVEHLLSA+ G+DN I++ + AE+PI DGSA +
Sbjct: 63 CTCLVNEQQVKVSTVEHLLSAVAGLGIDNLIIDVDS---------AEIPIMDGSALPFVY 113
Query: 139 AIEQVGL------------KRPW-IRE-DSFVAAFPSQKVQISYGIDFPQVPAIG--CQW 182
I+ VG+ K+P + E D + P + ++++ I+F P I CQ
Sbjct: 114 LIQSVGIETLNAPKRFLRIKKPIRVEEGDKWAELLPYEGFRVNFSIEFEH-PVIEKTCQT 172
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLR 241
S + I+ +RTF +++E + + L GGSL+NAIV + LN LR
Sbjct: 173 MSMD-FSSCSFIKEISRARTFGFMKDIEFLRSHNLALGGSLENAIVLD-NYRMLNKNELR 230
Query: 242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
+ DE +HK+LD +GDL + GS + + + AFK GH L+
Sbjct: 231 YDDEFVKHKILDAIGDLYM----GSASI-LGELNAFKSGHGLN 268
>UNIPROTKB|P0A725 [details] [associations]
symbol:lpxC species:83333 "Escherichia coli K-12"
[GO:0009245 "lipid A biosynthetic process" evidence=IEA;IMP]
[GO:0019213 "deacetylase activity" evidence=IDA] [GO:0008759
"UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
activity" evidence=IEA] InterPro:IPR004463 InterPro:IPR011334
InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0019213 GO:GO:0009245 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:X55034 EMBL:M19211 UniPathway:UPA00359 eggNOG:COG0774
KO:K02535 GO:GO:0008759 Gene3D:3.30.1700.10 Gene3D:3.30.230.20
TIGRFAMs:TIGR00325 HOGENOM:HOG000256663 OMA:KAYKSGH
ProtClustDB:PRK13186 PIR:A28381 RefSeq:NP_414638.1
RefSeq:YP_488401.1 ProteinModelPortal:P0A725 SMR:P0A725
DIP:DIP-48045N IntAct:P0A725 MINT:MINT-1309717
EnsemblBacteria:EBESCT00000003552 EnsemblBacteria:EBESCT00000003553
EnsemblBacteria:EBESCT00000003554 EnsemblBacteria:EBESCT00000003555
EnsemblBacteria:EBESCT00000014438 GeneID:12932864 GeneID:944816
KEGG:ecj:Y75_p0095 KEGG:eco:b0096 PATRIC:32115297 EchoBASE:EB0261
EcoGene:EG10265 BioCyc:EcoCyc:UDPACYLGLCNACDEACETYL-MONOMER
BioCyc:ECOL316407:JW0094-MONOMER
BioCyc:MetaCyc:UDPACYLGLCNACDEACETYL-MONOMER BindingDB:P0A725
ChEMBL:CHEMBL5244 Genevestigator:P0A725 Uniprot:P0A725
Length = 305
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 92/283 (32%), Positives = 136/283 (48%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDF------AKESP 78
Q+TL ++ TG LH+G T+ L P A G + R+ L P +DF +++
Sbjct: 4 QRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYR-RTDLNPP-VDFPADAKSVRDTM 61
Query: 79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA 137
LCT L + V+I TVEHL +AL G+DN IE++ E+PI DGSA+ +
Sbjct: 62 LCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVN---------APEIPIMDGSAAPFV 112
Query: 138 ----EA-IEQVGLKRPWIR-------EDSFV-AAF-PSQKVQISYGIDFPQVPAIGC--Q 181
+A I+++ + ++R ED A F P + + IDF PAI Q
Sbjct: 113 YLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNH-PAIDSSNQ 171
Query: 182 WFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLR 241
++ + I+ +RTF ++E + + GL GGS D AIV LR
Sbjct: 172 RYAMN-FSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLR 230
Query: 242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
F DE RHK+LD +GDL + N + A+K GHAL+
Sbjct: 231 FEDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALN 268
>TIGR_CMR|CJE_0127 [details] [associations]
symbol:CJE_0127 "UDP-3-0-acyl N-acetylglucosamine
deacetylase" species:195099 "Campylobacter jejuni RM1221"
[GO:0008759 "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase activity" evidence=ISS] [GO:0009245 "lipid A
biosynthetic process" evidence=ISS] InterPro:IPR004463
InterPro:IPR011334 InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009245
InterPro:IPR020568 SUPFAM:SSF54211 UniPathway:UPA00359
eggNOG:COG0774 KO:K02535 GO:GO:0008759 Gene3D:3.30.1700.10
Gene3D:3.30.230.20 TIGRFAMs:TIGR00325 RefSeq:YP_178151.1
ProteinModelPortal:Q5HX34 STRING:Q5HX34 GeneID:3230890
KEGG:cjr:CJE0127 PATRIC:20041961 HOGENOM:HOG000256663 OMA:KAYKSGH
ProtClustDB:PRK13186 BioCyc:CJEJ195099:GJC0-131-MONOMER
Uniprot:Q5HX34
Length = 294
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 85/254 (33%), Positives = 131/254 (51%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL---IPASIDFAKESPLCT 81
Q TLA ++ G LH G + L P A G F FRS L AS + + + T
Sbjct: 3 QLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVF-FRSDLNASYKASPENVINTQMAT 61
Query: 82 TLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIE 141
L + I T+EHL+SA+ A G+DN +I ++ A+ E P+ DGS+ ++ ++
Sbjct: 62 VLGDERGFISTIEHLMSAINAYGIDNVRIVLN---AN------EAPVMDGSSISFCMMLD 112
Query: 142 QVG------------LKRPW-IRE-DSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTP 187
+ G +K+P +R+ + FV P+++ +I+Y I F IG Q ++
Sbjct: 113 EAGVKELDVPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA-VIGEQSYNFE- 170
Query: 188 LEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDEP 246
Y +IA +RTF ++V+ + + L GGSL+N IV + LNP LRF DE
Sbjct: 171 FSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENR-ILNPEGLRFKDEF 229
Query: 247 CRHKLLDFVGDLSL 260
RHK+LD +GDL+L
Sbjct: 230 VRHKILDAIGDLTL 243
>UNIPROTKB|Q9KPH2 [details] [associations]
symbol:lpxC "UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0008759
"UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
activity" evidence=ISS] [GO:0009245 "lipid A biosynthetic process"
evidence=ISS] InterPro:IPR004463 InterPro:IPR011334
InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009245 InterPro:IPR020568
SUPFAM:SSF54211 UniPathway:UPA00359 eggNOG:COG0774 KO:K02535
GO:GO:0008759 Gene3D:3.30.1700.10 Gene3D:3.30.230.20
TIGRFAMs:TIGR00325 OMA:KAYKSGH ProtClustDB:PRK13186 PIR:H82080
RefSeq:NP_232026.1 ProteinModelPortal:Q9KPH2 SMR:Q9KPH2
DNASU:2613065 GeneID:2613065 KEGG:vch:VC2396 PATRIC:20083813
Uniprot:Q9KPH2
Length = 305
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 93/287 (32%), Positives = 132/287 (45%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDF------AKESP 78
Q+TL ++ TG LHSG T+ L P A G + R+ + P +DF +++
Sbjct: 4 QRTLKEIVKTTGVGLHSGRKVTLTLRPAAANTGIIYR-RTDVNPP-VDFPADPASVRDTM 61
Query: 79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA 137
LCT L D GV+I TVEHL +AL G+DN IE+ D E+PI DGSAS +
Sbjct: 62 LCTALVNDQGVRISTVEHLNAALAGMGIDNAIIEV--------DAP-EIPIMDGSASPFV 112
Query: 138 EAIEQVGL------------KRPWIREDSFV-AAF-PSQKVQISYGIDFPQVPAI-GCQW 182
++Q G+ K+P ED A F P ++ + I+F PAI G
Sbjct: 113 YLLQQAGIQTLNAPKRFIRIKKPVRIEDGDKWAEFVPFNGFRMDFEIEFNH-PAIDGDDQ 171
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
+ I+ +RTF ++E + + L GGS D AIV LRF
Sbjct: 172 RLVFDFSSQGFVKEISRARTFGFMRDIEYLQSQNLCLGGSFDCAIVLDDYRILNEEGLRF 231
Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFAR 289
+E HK+LD +GDL + + V A+K GH L+ R
Sbjct: 232 DNEFVTHKVLDAIGDLYM----AGHAI-VGEFRAYKSGHGLNNQLLR 273
>TIGR_CMR|VC_2396 [details] [associations]
symbol:VC_2396 "UDP-3-O-3-hydroxymyristoyl
N-acetylglucosamine deacetylase" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0008759 "UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR004463
InterPro:IPR011334 InterPro:IPR015870 Pfam:PF03331 HAMAP:MF_00388
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009245
InterPro:IPR020568 SUPFAM:SSF54211 UniPathway:UPA00359
eggNOG:COG0774 KO:K02535 GO:GO:0008759 Gene3D:3.30.1700.10
Gene3D:3.30.230.20 TIGRFAMs:TIGR00325 OMA:KAYKSGH
ProtClustDB:PRK13186 PIR:H82080 RefSeq:NP_232026.1
ProteinModelPortal:Q9KPH2 SMR:Q9KPH2 DNASU:2613065 GeneID:2613065
KEGG:vch:VC2396 PATRIC:20083813 Uniprot:Q9KPH2
Length = 305
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 93/287 (32%), Positives = 132/287 (45%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDF------AKESP 78
Q+TL ++ TG LHSG T+ L P A G + R+ + P +DF +++
Sbjct: 4 QRTLKEIVKTTGVGLHSGRKVTLTLRPAAANTGIIYR-RTDVNPP-VDFPADPASVRDTM 61
Query: 79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA 137
LCT L D GV+I TVEHL +AL G+DN IE+ D E+PI DGSAS +
Sbjct: 62 LCTALVNDQGVRISTVEHLNAALAGMGIDNAIIEV--------DAP-EIPIMDGSASPFV 112
Query: 138 EAIEQVGL------------KRPWIREDSFV-AAF-PSQKVQISYGIDFPQVPAI-GCQW 182
++Q G+ K+P ED A F P ++ + I+F PAI G
Sbjct: 113 YLLQQAGIQTLNAPKRFIRIKKPVRIEDGDKWAEFVPFNGFRMDFEIEFNH-PAIDGDDQ 171
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
+ I+ +RTF ++E + + L GGS D AIV LRF
Sbjct: 172 RLVFDFSSQGFVKEISRARTFGFMRDIEYLQSQNLCLGGSFDCAIVLDDYRILNEEGLRF 231
Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFAR 289
+E HK+LD +GDL + + V A+K GH L+ R
Sbjct: 232 DNEFVTHKVLDAIGDLYM----AGHAI-VGEFRAYKSGHGLNNQLLR 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 295 295 0.00092 115 3 11 22 0.50 33
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 621 (66 KB)
Total size of DFA: 227 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.35u 0.10s 24.45t Elapsed: 00:00:01
Total cpu time: 24.36u 0.10s 24.46t Elapsed: 00:00:01
Start: Mon May 20 21:30:52 2013 End: Mon May 20 21:30:53 2013