BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042138
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VES|A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa
Complexed With The Potent Bb-78485 Inhibitor
pdb|2VES|B Chain B, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa
Complexed With The Potent Bb-78485 Inhibitor
pdb|2VES|C Chain C, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa
Complexed With The Potent Bb-78485 Inhibitor
pdb|3P3E|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
LpxcLPC-009 Complex
pdb|3U1Y|A Chain A, Potent Inhibitors Of Lpxc For The Treatment Of
Gram-Negative Infections
pdb|3U1Y|B Chain B, Potent Inhibitors Of Lpxc For The Treatment Of
Gram-Negative Infections
pdb|3UHM|A Chain A, Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine
Deacetylase In Complex With Inhibitor
Length = 299
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 133/286 (46%), Gaps = 34/286 (11%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
Q+TL I TG LHSG + L P G F R+ L IPA + E+ +
Sbjct: 4 QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFS-RTDLDPVVEIPARAENVGETTM 62
Query: 80 CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
TTL K V++ TVEHLLSA+ G+DN +E+ +EVPI DGSA +
Sbjct: 63 STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELS---------ASEVPIMDGSAGPFVFL 113
Query: 140 IEQVGLK-----RPWIR--------EDSFVAAF-PSQKVQISYGIDFPQVPAIGCQWFST 185
I+ GL+ + +IR E A F P ++S+ IDF G ++
Sbjct: 114 IQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQAS 173
Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDE 245
T + ++ +RTF ++E + + L GGS++NAIV + LR+ DE
Sbjct: 174 VDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDE 233
Query: 246 PCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
+HK+LD +GDL L + + FK GHAL+ R L
Sbjct: 234 FVKHKILDAIGDLYLLGNS-----LIGEFRGFKSGHALNNQLLRTL 274
>pdb|1XXE|A Chain A, Rdc Refined Solution Structure Of The AalpxcTU-514 Complex
Length = 282
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
L++T+ + G +H+G S + + PE G G F IPA +F + T L
Sbjct: 3 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84 FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
G +I+TVEH+LS L + N IE+ + E+PI DGS + EAI +
Sbjct: 63 GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
L + P I ED + A PS ++++Y +F +G Q F T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
I +RTFC E+E + GL KGGSL N +V + + LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFCFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
+ D +GDL L G PV +F+GGH+L+V + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264
>pdb|2GO3|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Imidazole.
pdb|2GO3|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Imidazole.
pdb|2GO4|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Tu-514
pdb|2GO4|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Tu-514
Length = 267
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
L++T+ + G +H+G S + + PE G G F IPA +F + T L
Sbjct: 3 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84 FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
G +I+TVEH+LS L + N IE+ + E+PI DGS + EAI +
Sbjct: 63 GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
L + P I ED + A PS ++++Y +F +G Q F T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
I +RTF E+E + GL KGGSL N +V + + LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
+ D +GDL L G PV +F+GGH+L+V + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264
>pdb|2J65|A Chain A, Structure Of Lpxc From Aquifex Aeolicus In Complex With
Udp
pdb|2J65|B Chain B, Structure Of Lpxc From Aquifex Aeolicus In Complex With
Udp
pdb|2IER|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Uridine 5'- Diphosphate
pdb|2IER|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Uridine 5'- Diphosphate
pdb|2IES|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Pyrophosphate
pdb|2IES|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With
Pyrophosphate
pdb|2O3Z|A Chain A, X-Ray Crystal Structure Of Lpxc Complexed With
3-Heptyloxybenzoate
pdb|2O3Z|B Chain B, X-Ray Crystal Structure Of Lpxc Complexed With
3-Heptyloxybenzoate
pdb|3P76|A Chain A, X-Ray Crystal Structure Of Aquifex Aeolicus Lpxc Complexed
Sch1379777
Length = 271
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
L++T+ + G +H+G S + + PE G G F IPA +F + T L
Sbjct: 3 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84 FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
G +I+TVEH+LS L + N IE+ + E+PI DGS + EAI +
Sbjct: 63 GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
L + P I ED + A PS ++++Y +F +G Q F T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
I +RTF E+E + GL KGGSL N +V + + LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
+ D +GDL L G PV +F+GGH+L+V + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264
>pdb|1P42|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase
(zinc-inhibited Form)
pdb|1P42|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase
(zinc-inhibited Form)
pdb|1YH8|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase
Complexed With Palmitate
pdb|1YH8|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase
Complexed With Palmitate
pdb|1YHC|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase
Complexed With Cacodylate
pdb|1YHC|B Chain B, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase
Complexed With Cacodylate
Length = 270
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
L++T+ + G +H+G S + + PE G G F IPA +F + T L
Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 61
Query: 84 FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
G +I+TVEH+LS L + N IE+ + E+PI DGS + EAI +
Sbjct: 62 GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 112
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
L + P I ED + A PS ++++Y +F +G Q F T +EG
Sbjct: 113 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 168
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
I +RTF E+E + GL KGGSL N +V + + LR+ +EP RHK
Sbjct: 169 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 226
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
+ D +GDL L G PV +F+GGH+L+V + L+
Sbjct: 227 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 263
>pdb|3P3C|A Chain A, Crystal Structure Of The Aquifex Aeolicus LpxcLPC-009
Complex
Length = 274
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
L++T+ + G +H+G S + + PE G G F IPA +F + T L
Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 61
Query: 84 FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
G +I+TVEH+LS L + N IE+ + E+PI DGS + EAI +
Sbjct: 62 GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 112
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
L + P I ED + A PS ++++Y +F +G Q F T +EG
Sbjct: 113 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 168
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
I +RTF E+E + GL KGGSL N +V + + LR+ +EP RHK
Sbjct: 169 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 226
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
+ D +GDL L G PV +F+GGH+L+V + L+
Sbjct: 227 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 263
>pdb|2JT2|A Chain A, Solution Structure Of The Aquifex Aeolicus Lpxc- Chir-090
Complex
Length = 274
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
L++T+ + G +H+G S + + PE G G F IPA +F + T L
Sbjct: 3 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84 FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
G +I+TVEH+LS L + N IE+ + E+PI DGS + EAI +
Sbjct: 63 GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
L + P I ED + A PS ++++Y +F +G Q F T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
I +RTF E+E + GL KGGSL N +V + + LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
+ D +GDL L G PV +F+GGH+L+V + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264
>pdb|3NZK|A Chain A, Structure Of Lpxc From Yersinia Enterocolitica Complexed
With Chir090 Inhibitor
pdb|3NZK|B Chain B, Structure Of Lpxc From Yersinia Enterocolitica Complexed
With Chir090 Inhibitor
Length = 311
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
Q+TL ++ TG LH+G T+ + P A G + R+ L PA +++ L
Sbjct: 9 QRTLKRIVQATGVGLHTGKKVTLTMRPAPANTGVIYR-RTDLNPPVDFPADAKSVRDTML 67
Query: 80 CTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA- 137
CT L + V+I TVEHL +AL G+DN IE++ EVPI DGSAS +
Sbjct: 68 CTCLVNEHDVRISTVEHLNAALAGLGIDNIIIEVN---------APEVPIMDGSASPFVY 118
Query: 138 ----EAIEQVGLKRPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAI--GCQW 182
IE++ + ++R D + P ++ + IDF PAI Q
Sbjct: 119 LLLDAGIEELNSAKKFLRLKETVRVEDGDKWAELSPFNGFRLDFTIDFNH-PAIDSSTQR 177
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
+ + I+ +RTF ++E + + GL GGS D AIV LRF
Sbjct: 178 YRLD-FSADSFVRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRF 236
Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
DE RHK+LD +GDL + N + A+K GHAL+
Sbjct: 237 EDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALN 273
>pdb|3P3G|A Chain A, Crystal Structure Of The Escherichia Coli LpxcLPC-009
Complex
pdb|3PS1|A Chain A, Crystal Structure Of The Escherichia Coli LpxcLPC-011
Complex
pdb|3PS2|A Chain A, Crystal Structure Of The Escherichia Coli LpxcLPC-012
Complex
pdb|3PS3|A Chain A, Crystal Structure Of The Escherichia Coli LpxcLPC-053
Complex
Length = 300
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
Q+TL ++ TG LH+G T+ L P A G + R+ L PA +++ L
Sbjct: 4 QRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYR-RTDLNPPVDFPADAKSVRDTML 62
Query: 80 CTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA- 137
CT L + V+I TVEHL +AL G+DN IE++ E+PI DGSA+ +
Sbjct: 63 CTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVN---------APEIPIMDGSAAPFVY 113
Query: 138 ----EAIEQVGLKRPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGC--QW 182
I+++ + ++R D + P + + IDF PAI Q
Sbjct: 114 LLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNH-PAIDSSNQR 172
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
++ + I+ +RTF ++E + + GL GGS D AIV LRF
Sbjct: 173 YAMN-FSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRF 231
Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
DE RHK+LD +GDL + N + A+K GHAL+
Sbjct: 232 EDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALN 268
>pdb|1CFR|A Chain A, Crystal Structure Of Citrobacter Freundii Restriction
Endonuclease Cfr10i At 2.15 Angstroms Resolution
Length = 285
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 5 ATFNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFA---GKGRYFE 61
F +K N S+ + L+ FI L NV+ + P+F+ +GR E
Sbjct: 87 TNFIVVKMPNATSFDVMSIYKSCLSEFIYDLRSKLSLNNVNLITSNPDFSIIDIRGRREE 146
Query: 62 FRSRLIPASIDFAKESPL--CTTLFKDGVQIRTVEHLLSALEAK 103
+S L S S + L+K+ + +EH+ S L K
Sbjct: 147 LKSMLKDISFSNISLSTISEIDNLYKNFIDYAELEHIKSFLSVK 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,960,309
Number of Sequences: 62578
Number of extensions: 374172
Number of successful extensions: 653
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 11
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)