Query 042138
Match_columns 295
No_of_seqs 119 out of 735
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00325 lpxC UDP-3-0-acyl N- 100.0 5E-100 1E-104 716.4 29.3 254 24-294 2-274 (297)
2 PRK13186 lpxC UDP-3-O-[3-hydro 100.0 1.2E-99 3E-104 713.6 30.1 255 23-294 2-275 (295)
3 PF03331 LpxC: UDP-3-O-acyl N- 100.0 5E-100 1E-104 711.6 25.9 255 23-294 1-275 (277)
4 COG0774 LpxC UDP-3-O-acyl-N-ac 100.0 1.5E-99 3E-104 704.4 26.5 255 23-294 2-278 (300)
5 PRK13187 UDP-3-O-[3-hydroxymyr 100.0 2.4E-95 5E-100 686.1 28.0 253 22-294 8-293 (304)
6 PRK13188 bifunctional UDP-3-O- 100.0 6E-93 1.3E-97 702.3 29.2 253 23-293 3-300 (464)
7 cd01434 EFG_mtEFG1_IV EFG_mtEF 83.6 1.1 2.4E-05 36.4 3.0 75 25-113 2-86 (116)
8 cd01693 mtEFG2_like_IV mtEF-G2 64.6 8.3 0.00018 31.4 3.4 14 100-113 78-91 (120)
9 cd01684 Tet_like_IV EF-G_domai 62.2 15 0.00033 30.0 4.6 57 44-113 27-85 (115)
10 PF03719 Ribosomal_S5_C: Ribos 60.2 8.7 0.00019 29.7 2.6 16 44-59 7-22 (74)
11 CHL00138 rps5 ribosomal protei 45.8 17 0.00038 31.6 2.5 29 26-60 93-121 (143)
12 PRK04044 rps5p 30S ribosomal p 44.1 35 0.00076 31.7 4.4 38 17-60 119-156 (211)
13 TIGR01021 rpsE_bact ribosomal 44.0 19 0.00041 31.7 2.5 38 14-60 61-98 (154)
14 PRK00550 rpsE 30S ribosomal pr 43.5 46 0.00099 29.8 4.8 38 14-60 72-109 (168)
15 COG0098 RpsE Ribosomal protein 41.9 22 0.00047 32.4 2.5 27 32-60 95-121 (181)
16 COG5257 GCD11 Translation init 41.1 18 0.00038 36.3 2.0 22 89-111 125-146 (415)
17 cd01680 EFG_like_IV Elongation 37.0 63 0.0014 25.7 4.4 19 43-61 26-44 (116)
18 PRK02260 S-ribosylhomocysteina 36.3 27 0.00058 31.1 2.2 26 87-112 50-77 (158)
19 PTZ00070 40S ribosomal protein 34.2 31 0.00068 33.0 2.5 30 25-60 155-184 (257)
20 TIGR01020 rpsE_arch ribosomal 34.0 32 0.00069 32.0 2.4 18 43-60 139-156 (212)
21 COG1854 LuxS LuxS protein invo 33.9 20 0.00044 31.9 1.1 21 87-107 50-70 (161)
22 TIGR01608 citD citrate lyase a 30.8 32 0.0007 28.1 1.7 57 38-113 10-66 (92)
23 PF03764 EFG_IV: Elongation fa 24.8 37 0.0008 27.3 1.1 75 25-113 6-90 (120)
24 cd08319 Death_RAIDD Death doma 24.2 51 0.0011 26.0 1.7 18 89-106 58-75 (83)
25 PF02861 Clp_N: Clp amino term 24.2 45 0.00098 22.6 1.3 13 90-102 12-24 (53)
26 PHA00442 host recBCD nuclease 23.6 44 0.00095 25.1 1.1 14 95-108 30-43 (59)
27 PF02664 LuxS: S-Ribosylhomocy 22.7 26 0.00057 31.2 -0.2 25 88-112 50-77 (157)
28 COG4308 LimA Limonene-1,2-epox 20.5 35 0.00076 29.4 0.1 24 89-112 8-31 (130)
No 1
>TIGR00325 lpxC UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli, LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability.
Probab=100.00 E-value=4.7e-100 Score=716.42 Aligned_cols=254 Identities=40% Similarity=0.633 Sum_probs=239.7
Q ss_pred ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc---c-CceeecccccccccceeeeeecCCeEEEeHHHHHHH
Q 042138 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF---R-SRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSA 99 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~---~-~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAA 99 (295)
+|+||+++|+|+|+|||||++|+|||+|||+|+||+|.+ + .+.|||.+++|.+|.+||+|++++++|+||||||||
T Consensus 2 ~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGI~F~R~Dl~~~~~ipa~~~~v~~t~l~T~L~~~g~~V~TVEHLmAA 81 (297)
T TIGR00325 2 KQRTIKASVTVTGVGLHSGVKVTLTLRPAAANTGVVFYRTDLNPKVIFPADPTSVRDTMLCTELGNEGARISTVEHLLAA 81 (297)
T ss_pred CccccCceEEEEEEEccCCCEEEEEEEcCCCCCcEEEEEecCCCCceEEecHHHcccccceeEEecCCeEEEeHHHHHHH
Confidence 599999999999999999999999999999999999954 2 367999999999999999999989999999999999
Q ss_pred HhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeEE--eCCeEEEEeeCCCeE
Q 042138 100 LEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPWI--REDSFVAAFPSQKVQ 165 (295)
Q Consensus 100 L~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~~--~~~~~i~~~P~~~l~ 165 (295)
|+|||||||+||| +|+|+|||||||.||+++|++||++ +|+. ++++|+.++|+++|+
T Consensus 82 L~glgIDN~~Iei---------dg~EvPIlDGSa~~fv~~i~~aGi~~q~~~r~~~~i~~pv~v~~~~~~i~~~P~~~~~ 152 (297)
T TIGR00325 82 LAALGIDNLRIEV---------NAPEIPIMDGSALPFLYLLLDAGIRELNAAKKFIRIKQPVRVEDGDKFVEFKPYNGFR 152 (297)
T ss_pred HHhCCCceEEEEe---------CCCCCCccCCchHHHHHHHHhcCCeecCCccceEEECceEEEEECCEEEEEEcCCCcE
Confidence 9999999999999 4999999999999999999999997 2221 889999999999999
Q ss_pred EEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCCCC
Q 042138 166 ISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFPD 244 (295)
Q Consensus 166 it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf~d 244 (295)
|+|+|||+ +|+||+|+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|+|+ +|||+|
T Consensus 153 i~~~Idf~-~~~ig~Q~~~-~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSL~NAiVi~-~~~vlN~~gLRf~d 229 (297)
T TIGR00325 153 LDFTIDFN-HPAIGKQWYT-MNFSAEAFATQIARARTFGFMDDIEYLRSAGLIKGGSLDNAIVLD-DYRILNEDGLRFED 229 (297)
T ss_pred EEEEEECC-CCcccceEEE-EeCCHHHHHHHhcCCceEEcHHHHHHHHHCCccccccccceEEEC-CCcccCCCCCcCCC
Confidence 99999998 7999999999 788999999999999999999999999999999999999999997 5899998 699999
Q ss_pred CcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 245 EPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 245 E~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
|||||||||+||||||+|+| ++|||+|||+||++|++|+|+|+++
T Consensus 230 E~VRHKiLDlIGDL~L~G~p-----i~g~~~a~k~GH~ln~~l~~~l~~~ 274 (297)
T TIGR00325 230 EFVRHKMLDAIGDLSMLGKN-----IIGHFTAYKSSHKLNNKLLQAILAT 274 (297)
T ss_pred cchhhHHHHHHhhHHHcCCC-----ceEEEEEECCchHHHHHHHHHHHhc
Confidence 99999999999999999763 5799999999999999999999764
No 2
>PRK13186 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=100.00 E-value=1.2e-99 Score=713.61 Aligned_cols=255 Identities=41% Similarity=0.609 Sum_probs=240.8
Q ss_pred cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138 23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS 98 (295)
Q Consensus 23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA 98 (295)
++|+||+++|+|+|+|||||++|+|||+|||+|+||+|.+ +++.|||.+++|++|++||+|++++++|+|||||||
T Consensus 2 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~~~PA~~~tGI~F~R~dl~~~~~I~a~~~~v~~t~~~T~l~~~~~~V~TVEHllA 81 (295)
T PRK13186 2 IKQRTLKKPVTATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLPPPVEIPARAENVGDTRLCTTLGNGGVRVSTVEHLMA 81 (295)
T ss_pred CCcccccceEEEEEEEecCCcEEEEEEEcCCCCCEEEEEEccCCCCceEEecHHHcccCcceeEEecCCeEEEeHHHHHH
Confidence 4799999999999999999999999999999999999954 457899999999999999999999999999999999
Q ss_pred HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE-E-eCCeEEEEeeCCCe
Q 042138 99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW-I-REDSFVAAFPSQKV 164 (295)
Q Consensus 99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~-~-~~~~~i~~~P~~~l 164 (295)
||+|||||||+||| +|+|+|||||||.||+++|++||++ +|+ + ++++|+.++|+++|
T Consensus 82 AL~glgIDN~~Iev---------dg~EvPIlDGSA~~fv~~i~~aGi~~q~~~r~~~~i~~pv~v~~~~~~i~~~P~~~~ 152 (295)
T PRK13186 82 ALAGLGIDNALIEV---------DGPEVPIMDGSAAPFVFLIQSAGIVEQNAPKKFIRIKKPVRVEDGDKWAELLPYDGF 152 (295)
T ss_pred HHHhCCCceEEEEe---------CCCCCCCccCCHHHHHHHHHHCCCeecCCccceEEecceEEEEECCEEEEEEcCCCc
Confidence 99999999999999 4999999999999999999999997 222 1 78899999999999
Q ss_pred EEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCCC
Q 042138 165 QISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFP 243 (295)
Q Consensus 165 ~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf~ 243 (295)
+|+|+|||+ +|+||+|+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|+|+ +|||+
T Consensus 153 ~i~~~idf~-~~~ig~Q~~~-~~~~~~~f~~eIa~ARTF~f~~eve~L~~~GL~~GgsleNalVi~-~~~~lN~~gLRf~ 229 (295)
T PRK13186 153 RLDFTIDFD-HPAIGRQSYS-LDFSPESFVREIARARTFGFMKDVEYLRSAGLALGGSLDNAIVLD-DDRVLNPEGLRFE 229 (295)
T ss_pred EEEEEEECC-CCccceEEEE-EeCCHHHHHHhccCCcccCcHHHHHHHHHCCccccccccceEEEC-CCcccCCCCCcCC
Confidence 999999998 7999999999 889999999999999999999999999999999999999999997 5899997 59999
Q ss_pred CCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 244 DEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 244 dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
|||||||||||||||||+|+| ++|||+|||+||++|++|+|+|+++
T Consensus 230 dE~vRHKiLDlIGDLaL~G~p-----i~g~i~a~k~GH~ln~~l~~~l~~~ 275 (295)
T PRK13186 230 DEFVRHKILDAIGDLYLLGHP-----IIGHFTAYKSGHALNNKLLRALLAD 275 (295)
T ss_pred CcchhHHHHHHHHHHHhcCCC-----ceEEEEEECCCcHHHHHHHHHHHhC
Confidence 999999999999999999763 5799999999999999999999764
No 3
>PF03331 LpxC: UDP-3-O-acyl N-acetylglycosamine deacetylase; InterPro: IPR004463 UDP-3-O-N-acetylglucosamine deacetylases are zinc-dependent metalloamidases that catalyse the second and committed step in the biosynthesis of lipid A. Lipid A anchors lipopolysaccharide (the major constituent of the outer membrane) into the membrane in Gram negative bacteria. LpxC shows no homology to mammalian metalloamidases and is essential for cell viability, making it an important target for the development of novel antibacterial compounds []. The structure of UDP-3-O-N-acetylglucosamine deacetylase (LpxC) from Aquifex aeolicus has a two-layer alpha/beta structure similar to that of the second domain of ribosomal protein S5, only in LpxC there is a duplication giving two structural repeats of this fold, each repeat being elaborated with additional structures forming the active site. LpxC contains a zinc-binding motif, which resides at the base of an active site cleft and adjacent to a hydrophobic tunnel occupied by a fatty acid []. This tunnel accounts for the specificity of LpxC toward substrates and inhibitors bearing appropriately positioned 3-O-fatty acid substituents []. This entry represents the UDP-3-O-N-acetylglucosamine deacetylase family of proteins.; GO: 0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity, 0009245 lipid A biosynthetic process; PDB: 2VES_C 3U1Y_A 3P3E_A 3UHM_A 1XXE_A 2IER_A 1YH8_B 2GO4_A 2O3Z_B 2GO3_B ....
Probab=100.00 E-value=4.7e-100 Score=711.59 Aligned_cols=255 Identities=45% Similarity=0.666 Sum_probs=216.9
Q ss_pred cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138 23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS 98 (295)
Q Consensus 23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA 98 (295)
++|+||+++|+++|+|||||++|+|||+|||+|+||+|.+ +++.|||.+++|++|.+||+|+.++++|+|||||||
T Consensus 1 m~Q~Ti~~~v~~~GiGLHsG~~v~l~l~PA~~~~Gi~F~R~dl~~~~~I~a~~~~v~~t~~~T~L~~~~~~V~TVEHllA 80 (277)
T PF03331_consen 1 MKQRTIKKPVSFSGIGLHSGKPVTLTLRPAPANTGIVFRRTDLPGSPIIPAHPENVVDTSRSTTLGNGGASVSTVEHLLA 80 (277)
T ss_dssp -EEEEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSSS-EEEESSGGGEEEESSSEEEEETTEEEB--HHHHH
T ss_pred CCcccCCCeEEEEEEEeecCCEEEEEEEECCCCCCEEEEEeCCCCCcEEEEEHHHccccCCccEEecCCEEEEEHHHHHH
Confidence 4799999999999999999999999999999999999964 358899999999999999999999999999999999
Q ss_pred HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeEE--eCCeEEEEeeCCCe
Q 042138 99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPWI--REDSFVAAFPSQKV 164 (295)
Q Consensus 99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~~--~~~~~i~~~P~~~l 164 (295)
||+|||||||+||| +|+|+|||||||.||+++|++||++ +|+. ++++|+.++|+++|
T Consensus 81 AL~glgIDN~~Iev---------dg~EvPilDGSa~~fv~~i~~aGi~~q~~~~~~~~i~~~v~v~~~~~~i~~~P~~~l 151 (277)
T PF03331_consen 81 ALYGLGIDNALIEV---------DGPEVPILDGSALPFVEAIEEAGIVEQDAPRKYLRIKEPVEVEDGDKFIRALPSDGL 151 (277)
T ss_dssp HHHHCT--SEEEEE---------SSSB---TTSSSHHHHHHHHHHEEEEEEEE--EEEE-S-EEEEETTEEEEEEE-SSE
T ss_pred HHHhCCCceEEEEE---------CCCCCCCcCCcHHHHHHHHHhcCcccccCCcceEEecceEEEEECCEEEEEEeCCCc
Confidence 99999999999999 4999999999999999999999998 1221 88999999999999
Q ss_pred EEEEEEeCCCCCCcce-eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCC
Q 042138 165 QISYGIDFPQVPAIGC-QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRF 242 (295)
Q Consensus 165 ~it~~Idf~~~~~Ig~-Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf 242 (295)
+|+|+|||+ +|+||+ |+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|+|+ +|||
T Consensus 152 ~i~~~idf~-~~~ig~~Q~~~-~~~~~~~f~~eIa~ARTF~f~~eve~L~~~GL~~Ggsl~Naiv~~-~~~~ln~~gLR~ 228 (277)
T PF03331_consen 152 KITYTIDFP-HPAIGRTQSFS-FELTPETFKREIAPARTFGFLEEVEYLRKRGLAKGGSLDNAIVID-DDGVLNPPGLRF 228 (277)
T ss_dssp EEEEEEE-S-STTTTGGCEEE-EETTHHHHHHHTTT--EEEEHHHHHHHHHTT-STT-STTTCEEE--SSSBSSTT--SS
T ss_pred EEEEEEECC-CCCcCCceEEE-EEeCHHHHHHHhhccCccCcHHHHHHHHHCCCcccccchheEEec-cccccCcccccc
Confidence 999999999 899999 9999 889999999999999999999999999999999999999999997 5999997 5999
Q ss_pred CCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 243 ~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
+|||||||||||||||||+|+| ++|||+|||+||++|++|+|+|+++
T Consensus 229 ~dE~vRHKiLDliGDL~L~G~~-----~~g~i~a~k~GH~ln~~l~~~l~~~ 275 (277)
T PF03331_consen 229 EDEFVRHKILDLIGDLALLGRP-----IKGHIIAYKSGHALNVELVKALLKD 275 (277)
T ss_dssp TTHHHHHHHHHHHHHHGGGSSE-----EEEEEEEES--HHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHhcCCC-----eEEEEEEEcCChHHHHHHHHHHHhh
Confidence 9999999999999999999763 5799999999999999999999875
No 4
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-99 Score=704.42 Aligned_cols=255 Identities=40% Similarity=0.601 Sum_probs=240.3
Q ss_pred cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc---c-CceeecccccccccceeeeeecC-CeEEEeHHHHH
Q 042138 23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF---R-SRLIPASIDFAKESPLCTTLFKD-GVQIRTVEHLL 97 (295)
Q Consensus 23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~---~-~~~Ipa~~~~v~~t~~~T~L~~~-~~~V~TVEHLl 97 (295)
++|+||+++|+++|+|||||+++++|++||++||||+|.+ + .+.|||..++|.+|.+||+|+++ +++|+||||||
T Consensus 2 ~~Q~Tlk~~v~~~GVGlHsG~~v~ltl~Pa~a~tGIvF~R~dl~~~~~ipA~~~~V~~T~l~T~L~~~~~~~I~TVEHLm 81 (300)
T COG0774 2 MKQRTLKRIVSLTGVGLHSGKKVTLTLRPAPANTGIVFRRTDLNPPVEIPADAENVRDTMLSTTLGNDHGVRISTVEHLM 81 (300)
T ss_pred cchhhhhcceEEEEEEeccCcEEEEEEEecCCCCeEEEEEccCCCcccccccHHHhhccceeeeecCCCCcEEeeHHHHH
Confidence 5799999999999999999999999999999999999964 3 47899999999999999999998 99999999999
Q ss_pred HHHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeEE--eCCeEEEEeeCCC
Q 042138 98 SALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPWI--REDSFVAAFPSQK 163 (295)
Q Consensus 98 AAL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~~--~~~~~i~~~P~~~ 163 (295)
|||+++||||++||| +|+|+|||||||.||+++|++|||+ +|+. ++|+|+.+.|+|+
T Consensus 82 aAl~~lgIDN~~Iev---------~g~EiPImDGSa~~Fv~li~~aGi~~q~a~~~~irI~~pV~v~~gdk~~~~~P~dg 152 (300)
T COG0774 82 AALAGLGIDNLIIEV---------DGPEIPIMDGSAAPFVELIDEAGIKEQNAKKKFIRIKKPVRVEDGDKWAEFTPYDG 152 (300)
T ss_pred HHHHhCCCccEEEEe---------cCCcCcccCCchHHHHHHHHHhCchhhccccceEEEeccEEEecCCEEEEEecCCC
Confidence 999999999999999 4999999999999999999999998 2331 8899999999999
Q ss_pred eEEEEEEeCCCCCCcce--eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CC
Q 042138 164 VQISYGIDFPQVPAIGC--QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PL 240 (295)
Q Consensus 164 l~it~~Idf~~~~~Ig~--Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~L 240 (295)
++++|+|||+ ||+||+ |.|. ++.+.++|.+|||+||||||++|||+||++||++|||||||||++ +++|||+ ||
T Consensus 153 ~r~~~~IdF~-~p~Ig~~~q~~~-~~~~~~sf~~eIa~ARTFGF~~dvE~L~~~gLalGGSleNaiVid-d~~vlN~~gL 229 (300)
T COG0774 153 FRLSYTIDFD-HPAIGRQWQSFE-FDFSAESFRKEIARARTFGFMRDVEYLRSKGLALGGSLENAIVID-DDRVLNPEGL 229 (300)
T ss_pred cEEEEEEecC-CcccCCcceeEE-EecchHHHHHHhhhhhhhhhHHHHHHHHHcCccccccccceEEEC-CCceeCCccc
Confidence 9999999998 899999 6677 778888999999999999999999999999999999999999997 5999995 89
Q ss_pred CCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 241 RFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 241 Rf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
||+||||||||||+||||||+|+| ++|||.|||+||+||++|+|+|+++
T Consensus 230 Rf~dEfVRHKiLDaiGDL~l~G~p-----~ig~f~ayk~gH~lN~~l~k~iLad 278 (300)
T COG0774 230 RFEDEFVRHKILDAIGDLYLLGHP-----IIGAFTAYKSGHALNNALLKAILAD 278 (300)
T ss_pred cCCCcchhhhHHHhhhhHHhcCCc-----ceEEEEEeccchHHHHHHHHHHHhC
Confidence 999999999999999999999763 6899999999999999999999875
No 5
>PRK13187 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=100.00 E-value=2.4e-95 Score=686.08 Aligned_cols=253 Identities=30% Similarity=0.462 Sum_probs=235.2
Q ss_pred CcccccccceeEEEEEEeecCCeEEEEEeecCCCC---eEEEEc---c-Cc-eeecccccccccceeeeeec-CCeEEEe
Q 042138 22 GRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGK---GRYFEF---R-SR-LIPASIDFAKESPLCTTLFK-DGVQIRT 92 (295)
Q Consensus 22 ~~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~t---Gi~F~~---~-~~-~Ipa~~~~v~~t~~~T~L~~-~~~~V~T 92 (295)
..+|+||+++|+++|+|||||++|+|||+|||+|| ||+|.+ + .+ .|||.+++|.+|++||+|++ ++++|+|
T Consensus 8 ~~~Q~Tl~~~v~~~GiGLHSG~~v~vtl~PA~~~t~~~GIvF~R~d~~~~~~~Ipa~~~~v~~t~l~T~L~~~~~~~V~T 87 (304)
T PRK13187 8 ATSQGTLARPLTIDGHGLHTGRRVGVRILPARPEDGVTGIVFRRVEQGRTLATLPVDPALRRAQPLCTMLRNADGVGVRT 87 (304)
T ss_pred ccccccccceEEEEEEEecCCcEEEEEEEcCCCCCCCccEEEEEccCCCCceeEEcCHHHccCCcceeEEecCCCcEEee
Confidence 45799999999999999999999999999999999 999964 2 34 69999999999999999998 7999999
Q ss_pred HHHHHHHHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE-E-eCC----e
Q 042138 93 VEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW-I-RED----S 154 (295)
Q Consensus 93 VEHLlAAL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~-~-~~~----~ 154 (295)
||||||||++||||||+||| +|+|+|||||||.||+++|++||++ +|+ + +++ +
T Consensus 88 VEHLlAAL~glgIDN~~Iev---------dg~EvPIlDGSA~~fv~~i~~aGi~~q~~~r~~~~i~~pv~v~~~~~~~~~ 158 (304)
T PRK13187 88 VEHLLASLLACEIDHAIVEL---------DAEEVPILDGSATPWVDAIRACGRVALDAPKRFIRVLRTVVVTDGEGEQRR 158 (304)
T ss_pred HHHHHHHHHhCCCceEEEEe---------CCCCCCcccCCHHHHHHHHHhcCCeecCCccceEEeCceEEEEeCCCcccE
Confidence 99999999999999999999 4999999999999999999999997 222 1 666 9
Q ss_pred EEEEeeCCCeEEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHH------HHHHHHHcCcccccCCcceEE
Q 042138 155 FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYE------EVERMCNAGLIKGGSLDNAIV 228 (295)
Q Consensus 155 ~i~~~P~~~l~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~------eve~L~~~GLa~GgSldNaiV 228 (295)
|+.++|+++|+|+|+|||+ .||+|+++ +++++++|.+|||+||||||++ |+|+|+++||++|||||||||
T Consensus 159 ~i~~~P~~~~~it~~idf~---~ig~Q~~~-~~~~~~~f~~eIA~ARTFgf~~ev~~~~~~e~l~~~GLa~GgSl~NAiV 234 (304)
T PRK13187 159 EMRIEPAPRYELSVRNDLR---GFGEMHWD-GALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTAS 234 (304)
T ss_pred EEEEEcCCCcEEEEEEECc---ccCceEEE-EeCCHHHHHHhccCcceEEeehhccchhhHHHHHhCCccccccccceEE
Confidence 9999999999999999995 49999999 8999999999999999999999 559999999999999999999
Q ss_pred ecCCCcccCCCCCCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 229 CSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 229 i~~~~g~lN~~LRf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
++ +++|+| +|||+||||||||||+||||||+|+| ++|||+|||+||++|++|+++|+++
T Consensus 235 i~-~~~vl~-gLRf~dE~VRHKiLDlIGDL~L~G~p-----i~g~iia~k~GH~ln~~l~~~L~~~ 293 (304)
T PRK13187 235 IV-GKRVLG-GMRLPDEFVRHRVLDLVGDLALAGAP-----LLARVSALRPSHEMNFRLVDALLAE 293 (304)
T ss_pred Ec-CCceec-CCcCCCcchhhHHHHHhhHHHhcCCC-----ceEEEEEECCchHHHHHHHHHHHhC
Confidence 97 589998 89999999999999999999999763 5799999999999999999999764
No 6
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=100.00 E-value=6e-93 Score=702.27 Aligned_cols=253 Identities=39% Similarity=0.607 Sum_probs=235.5
Q ss_pred cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138 23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS 98 (295)
Q Consensus 23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA 98 (295)
.+|+||+++++++|+|||||++|+||++|||+|+||+|.+ +++.|||.+++|++|++||+|+.+|++|+|||||||
T Consensus 3 ~~q~Tl~~~v~~~GiGlHsG~~~~~~~~Pa~~~~Gi~F~r~d~~~~~~i~a~~~~v~~t~~~T~l~~~~~~v~TvEHlla 82 (464)
T PRK13188 3 IKQRTIKKEVSLQGVGLHTGKEVTITFKPAPENHGYKFKRTDLEGQPIIDADVDNVVDTERGTTLEKNGVKVHTVEHVLA 82 (464)
T ss_pred cccccccceEEEEEEEccCCcEEEEEEEcCCCCCcEEEEEecCCCCceeEecHHHccCCcceeEEccCCeEEEeHHHHHH
Confidence 4699999999999999999999999999999999999954 346799999999999999999999999999999999
Q ss_pred HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE-E-e--CCeEEEEeeCC
Q 042138 99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW-I-R--EDSFVAAFPSQ 162 (295)
Q Consensus 99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~-~-~--~~~~i~~~P~~ 162 (295)
||+|||||||+||| +|+|+|||||||.||+++|++||++ +|+ + + +++|+.++|++
T Consensus 83 Al~~~gIdn~~iei---------~g~E~Pi~DGSa~~f~~~i~~agi~~~~~~~~~~~i~~~v~v~~~~~~~~i~~~P~~ 153 (464)
T PRK13188 83 ALYGLGIDNCLIEL---------DGPEPPIMDGSSKPFVEAIEEAGIVEQDAPRNYYVIKETIEYHDEETGSEIIALPLD 153 (464)
T ss_pred HHHhCCCcEEEEEe---------CCCCCCccCCCHHHHHHHHHHcCCeecCCccceEEeCceEEEEECCCCEEEEEEcCC
Confidence 99999999999999 4999999999999999999999997 222 1 4 57999999999
Q ss_pred CeEEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEe-------------
Q 042138 163 KVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVC------------- 229 (295)
Q Consensus 163 ~l~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi------------- 229 (295)
+|+|||+|||+ +|+||+|+++ +... ++|.+|||+||||||++|+|+|+++||++|||||||||+
T Consensus 154 ~~~i~~~idf~-~~~ig~q~~~-~~~~-~~f~~eia~aRTF~~~~~ve~l~~~gl~~Ggsl~naiv~~~~~~~~~~~~~~ 230 (464)
T PRK13188 154 DFRITVMVDFD-SKVLGSQHAT-LFDL-SEFKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVIVDKEMSQEELDKL 230 (464)
T ss_pred CcEEEEEEECC-CCccceeEEE-EeCh-HHHHHhcCccceeEeHHHHHHHHHCCccccccccceEEEEccccchhhhhhh
Confidence 99999999998 7999999999 5423 399999999999999999999999999999999999999
Q ss_pred -----------cCCCcccCC-CCCCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhh
Q 042138 230 -----------SASEGWLNP-PLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSG 293 (295)
Q Consensus 230 -----------~~~~g~lN~-~LRf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~ 293 (295)
+ +++|+|+ +|||+||||||||||+||||||+|+| ++|||+|||+||++|++|+|+|++
T Consensus 231 ~~~~~~~~~~~~-~~~~ln~~~LR~~dE~vRHKiLD~iGDl~L~G~~-----~~g~~~a~k~gH~ln~~l~~~l~~ 300 (464)
T PRK13188 231 AKKFGKDHISVK-ENGILNNRPLRFPNEPARHKLLDVIGDLALIGKP-----IKGRIIAARPGHAINVEFAKKLKK 300 (464)
T ss_pred hhhhcccccccC-CCeEeCCCCCcCCCcchhhHHHHHHhhHHhcCCC-----ceEEEEEECCchHHHHHHHHHHHH
Confidence 6 5899997 79999999999999999999999763 579999999999999999999976
No 7
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=83.59 E-value=1.1 Score=36.36 Aligned_cols=75 Identities=21% Similarity=0.136 Sum_probs=41.7
Q ss_pred cccccceeEEEEEEeecC--------CeEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeHH
Q 042138 25 QQTLAGFIEKTGKTLHSG--------NVSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTVE 94 (295)
Q Consensus 25 Q~Tl~~~v~~~GiGLHsG--------~~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVE 94 (295)
+-||.++++.. +.|.- -.+.|++.|++.+.|+.|.. ....+|..+...+......++..|
T Consensus 2 rEti~~~~~~~--~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~G-------- 71 (116)
T cd01434 2 RETITKPAEFE--YRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKG-------- 71 (116)
T ss_pred CcccCceeeEE--EEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcC--------
Confidence 34777776655 33321 23789999998889998853 222233222221111111111111
Q ss_pred HHHHHHhhCCCceEEEEEe
Q 042138 95 HLLSALEAKGVDNCKIEIH 113 (295)
Q Consensus 95 HLlAAL~glgIDN~~Iei~ 113 (295)
-|.|+.+.|+.|.|.
T Consensus 72 ----pl~G~pv~~v~V~l~ 86 (116)
T cd01434 72 ----PLAGYPVVDVKVTLY 86 (116)
T ss_pred ----cccCCccccEEEEEE
Confidence 146888999999995
No 8
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=64.61 E-value=8.3 Score=31.39 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.3
Q ss_pred HhhCCCceEEEEEe
Q 042138 100 LEAKGVDNCKIEIH 113 (295)
Q Consensus 100 L~glgIDN~~Iei~ 113 (295)
|.|+.+-|+.|.|.
T Consensus 78 l~G~pv~~v~V~l~ 91 (120)
T cd01693 78 LLGFPVQDVAITLH 91 (120)
T ss_pred ccCCceeeEEEEEE
Confidence 57889999999995
No 9
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=62.24 E-value=15 Score=29.98 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=33.8
Q ss_pred eEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeHHHHHHHHhhCCCceEEEEEe
Q 042138 44 VSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIH 113 (295)
Q Consensus 44 ~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAAL~glgIDN~~Iei~ 113 (295)
.+.+++.|.+.+.|+.|.. ....||-.+-..+...+..++..| -| |+.|.|+.|.|.
T Consensus 27 ~v~l~veP~~~g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G------------~l-G~pv~dv~V~l~ 85 (115)
T cd01684 27 TVGLRVEPLPRGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQG------------LY-GWEVTDCKVTLT 85 (115)
T ss_pred EEEEEEEECCCCCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcC------------CC-CCCEeeEEEEEE
Confidence 4899999998888999953 222344222222222222222222 26 889999999995
No 10
>PF03719 Ribosomal_S5_C: Ribosomal protein S5, C-terminal domain; InterPro: IPR005324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of proteins related to the 30S ribosomal protein S5P from Sulfolobus acidocaldarius (O05641 from SWISSPROT). Ribosomal protein S5 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_E 2XZM_E 2WDK_E 3KNJ_E 3HUY_E 2B9M_E 2Y18_E 1XMQ_E 1IBM_E 3TVF_H ....
Probab=60.23 E-value=8.7 Score=29.70 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.5
Q ss_pred eEEEEEeecCCCCeEE
Q 042138 44 VSTVRLCPEFAGKGRY 59 (295)
Q Consensus 44 ~v~v~l~PA~~~tGi~ 59 (295)
.++|.++|||.++|++
T Consensus 7 ~~~V~l~Pap~G~Gl~ 22 (74)
T PF03719_consen 7 ATKVFLKPAPPGTGLV 22 (74)
T ss_dssp TEEEEEEESCTTSCEE
T ss_pred eEEEEEEeCCCCccee
Confidence 4789999999999996
No 11
>CHL00138 rps5 ribosomal protein S5; Validated
Probab=45.80 E-value=17 Score=31.65 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=21.1
Q ss_pred ccccceeEEEEEEeecCCeEEEEEeecCCCCeEEE
Q 042138 26 QTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 26 ~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F 60 (295)
+||-.+++-. =..++|++.|||.++||+=
T Consensus 93 ~TI~~~v~gk------~gs~~V~l~Pap~G~Gi~a 121 (143)
T CHL00138 93 NSIPHNITGI------FGAAKVILRPSAPGSGVIA 121 (143)
T ss_pred CeEeeEEEEE------EeeEEEEEEECCCCCcEEE
Confidence 5776555432 2357899999999999964
No 12
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed
Probab=44.14 E-value=35 Score=31.68 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=25.3
Q ss_pred eecCCCcccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEE
Q 042138 17 SWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 17 ~~~~~~~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F 60 (295)
+|+-.-..-+||-.++. |. =..++|.+.|||+++||+=
T Consensus 119 ~We~~~~~~~TI~h~v~--gk----~gs~~V~l~Pap~GtGiia 156 (211)
T PRK04044 119 SWECGCGEPHSVPFKVT--GK----AGSVEVTLKPAPRGLGLVA 156 (211)
T ss_pred cccccCCCCCcCCeEEE--EE----EccEEEEEEECCCCCeEEE
Confidence 35433334468876664 32 2347899999999999964
No 13
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=43.97 E-value=19 Score=31.69 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=24.2
Q ss_pred ceeeecCCCcccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEE
Q 042138 14 NVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 14 ~~~~~~~~~~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F 60 (295)
|+++-. +.+.||-.++.-. =..++|.+.|||+++||+=
T Consensus 61 nl~~V~---~~~~Ti~~~v~gk------~gs~~V~l~Pap~G~Gi~a 98 (154)
T TIGR01021 61 NLINVP---LTKGTIPHEVIGV------SGAAKVLLKPASPGTGVIA 98 (154)
T ss_pred CeEEEe---cCCCccceEEEEE------ECcEEEEEEECCCCCceEe
Confidence 555542 2333776555422 2357899999999999964
No 14
>PRK00550 rpsE 30S ribosomal protein S5; Validated
Probab=43.55 E-value=46 Score=29.75 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=26.2
Q ss_pred ceeeecCCCcccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEE
Q 042138 14 NVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 14 ~~~~~~~~~~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F 60 (295)
|+++-.. ..+||..++.-.- ..++|.+.|||.++||+=
T Consensus 72 nl~~V~~---~~~Ti~~~v~gk~------gs~kV~l~Pap~G~Gl~a 109 (168)
T PRK00550 72 NMIKVPL---VGGTIPHEVIGKF------GAAKVLLKPASEGTGVIA 109 (168)
T ss_pred CEEEEec---CCCccceeEEEEE------ceEEEEEEeCCCCCceEe
Confidence 5555422 2678877665432 238999999999999964
No 15
>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
Probab=41.85 E-value=22 Score=32.40 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=19.2
Q ss_pred eEEEEEEeecCCeEEEEEeecCCCCeEEE
Q 042138 32 IEKTGKTLHSGNVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 32 v~~~GiGLHsG~~v~v~l~PA~~~tGi~F 60 (295)
+...-.|=|.+ ++|.+.|||++|||+=
T Consensus 95 iph~v~Gk~g~--~~V~L~PA~~GtGiiA 121 (181)
T COG0098 95 IPHEVIGKHGA--VKVLLKPAPEGTGIIA 121 (181)
T ss_pred eeeEEEEEECc--EEEEEEECCCCceEEe
Confidence 33444455543 6788999999999975
No 16
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=41.05 E-value=18 Score=36.34 Aligned_cols=22 Identities=50% Similarity=0.584 Sum_probs=19.1
Q ss_pred EEEeHHHHHHHHhhCCCceEEEE
Q 042138 89 QIRTVEHLLSALEAKGVDNCKIE 111 (295)
Q Consensus 89 ~V~TVEHLlAAL~glgIDN~~Ie 111 (295)
+=+|.|||| ||.-+||+|++|-
T Consensus 125 QPQT~EHl~-AleIigik~iiIv 146 (415)
T COG5257 125 QPQTREHLM-ALEIIGIKNIIIV 146 (415)
T ss_pred CCchHHHHH-HHhhhccceEEEE
Confidence 568999987 6899999999875
No 17
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=36.96 E-value=63 Score=25.68 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.6
Q ss_pred CeEEEEEeecCCCCeEEEE
Q 042138 43 NVSTVRLCPEFAGKGRYFE 61 (295)
Q Consensus 43 ~~v~v~l~PA~~~tGi~F~ 61 (295)
..++|++.|.+.+.|..|.
T Consensus 26 a~v~l~veP~~~~~~~~~~ 44 (116)
T cd01680 26 GEVTLRVEPLERGSGVRVV 44 (116)
T ss_pred EEEEEEEEECCCCCCcEEE
Confidence 4678999998888888885
No 18
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=36.34 E-value=27 Score=31.14 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=19.4
Q ss_pred CeEEEeHHHHHHHHhhCCCce--EEEEE
Q 042138 87 GVQIRTVEHLLSALEAKGVDN--CKIEI 112 (295)
Q Consensus 87 ~~~V~TVEHLlAAL~glgIDN--~~Iei 112 (295)
...++|+|||+|.+.---.+. =+|++
T Consensus 50 ~~alHTlEHL~At~lRn~~~~~~~iI~~ 77 (158)
T PRK02260 50 TAGIHTLEHLLAGFLRNHLDGGVEIIDI 77 (158)
T ss_pred CcchhHHHHHHHHHHhhCccCCceEEEE
Confidence 457999999999998766655 13666
No 19
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=34.22 E-value=31 Score=32.97 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=21.4
Q ss_pred cccccceeEEEEEEeecCCeEEEEEeecCCCCeEEE
Q 042138 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 25 Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F 60 (295)
-+||-..| +|. =-.++|+|.|||.++||+=
T Consensus 155 ~hTIp~~V--~GK----~GSv~V~L~PAP~GtGivA 184 (257)
T PTZ00070 155 PHTVPMKV--TGK----CGSVRVRLVPAPRGTGIVA 184 (257)
T ss_pred CCCeeeeE--EEE----eCeEEEEEEeCCCCccEEe
Confidence 35765444 443 2468999999999999974
No 20
>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type). This model finds eukaryotic ribosomal protein S2 as well as archaeal ribosomal protein S5.
Probab=34.01 E-value=32 Score=32.03 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.7
Q ss_pred CeEEEEEeecCCCCeEEE
Q 042138 43 NVSTVRLCPEFAGKGRYF 60 (295)
Q Consensus 43 ~~v~v~l~PA~~~tGi~F 60 (295)
..++|.+.|||.++|++=
T Consensus 139 gs~~V~L~PAP~GtGlia 156 (212)
T TIGR01020 139 GSVRVRLIPAPRGLGLVA 156 (212)
T ss_pred ccEEEEEEeCCCCCceec
Confidence 457999999999999974
No 21
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=33.87 E-value=20 Score=31.94 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.2
Q ss_pred CeEEEeHHHHHHHHhhCCCce
Q 042138 87 GVQIRTVEHLLSALEAKGVDN 107 (295)
Q Consensus 87 ~~~V~TVEHLlAAL~glgIDN 107 (295)
...|+|+|||+|-+.---++-
T Consensus 50 ~~~iHTlEHL~A~~iRnh~~g 70 (161)
T COG1854 50 PAGIHTLEHLLAGFIRNHLNG 70 (161)
T ss_pred ccchhhHHHHHHHHHHhcccC
Confidence 357999999999998777664
No 22
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=30.82 E-value=32 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=34.4
Q ss_pred EeecCCeEEEEEeecCCCCeEEEEccCceeecccccccccceeeeeecCCeEEEeHHHHHHHHhhCCCceEEEEEe
Q 042138 38 TLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIH 113 (295)
Q Consensus 38 GLHsG~~v~v~l~PA~~~tGi~F~~~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAAL~glgIDN~~Iei~ 113 (295)
|...-.++.|++.|+ .+.||.+.+.+. ....-|.+|+ +=+...|..+||+|+.|.+.
T Consensus 10 GTlESSD~~V~v~P~-~~~gi~iel~S~----------------V~kQfG~~Ir--~~v~etL~~lgV~~~~v~v~ 66 (92)
T TIGR01608 10 GTLESSDVMIMVEPA-MQVGIEIDLVSD----------------VKKQFGDDIE--STVKETLKLLGVENAVVKVV 66 (92)
T ss_pred cccccccEEEEEEeC-CCCcEEEEEEEH----------------HHHHHhHHHH--HHHHHHHHHcCCceEEEEEE
Confidence 334456788999996 355787765321 1111112222 22455678899999999994
No 23
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=24.83 E-value=37 Score=27.35 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=39.1
Q ss_pred cccccceeE-EE-------EEEeecCCeEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeHH
Q 042138 25 QQTLAGFIE-KT-------GKTLHSGNVSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTVE 94 (295)
Q Consensus 25 Q~Tl~~~v~-~~-------GiGLHsG~~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVE 94 (295)
+-||.++++ ++ |.--|. ..+.+++.|.+ +.|..|.. ....+|..+...+......++..|
T Consensus 6 rEti~~~~~~~~~~~~~~~g~~~~~-a~v~~~~~P~~-~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~G-------- 75 (120)
T PF03764_consen 6 RETITKEVEGVEETFKRQYGGKRQF-AKVILRVEPLE-GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSG-------- 75 (120)
T ss_dssp EEEESS-EEHEEEEEEEECTSSEEE-EEEEEEEEETS-TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSS--------
T ss_pred chhcCccHHHHHHHHHHHhCCCCce-EEEEEEEeecc-cCCceeeeccccccccHHHHHHHhhhhhheeccc--------
Confidence 447777776 43 222222 26789999999 99999953 222233222222111111111112
Q ss_pred HHHHHHhhCCCceEEEEEe
Q 042138 95 HLLSALEAKGVDNCKIEIH 113 (295)
Q Consensus 95 HLlAAL~glgIDN~~Iei~ 113 (295)
.|.++.|.++.|.|.
T Consensus 76 ----pl~g~pv~~v~v~l~ 90 (120)
T PF03764_consen 76 ----PLCGYPVTDVKVTLT 90 (120)
T ss_dssp ----TTTSSEB-SEEEEEE
T ss_pred ----ccCCCceEEEEEEEE
Confidence 245788899999985
No 24
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=24.18 E-value=51 Score=26.04 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=16.0
Q ss_pred EEEeHHHHHHHHhhCCCc
Q 042138 89 QIRTVEHLLSALEAKGVD 106 (295)
Q Consensus 89 ~V~TVEHLlAAL~glgID 106 (295)
.=.|++.|+.||..+++|
T Consensus 58 ~~ATv~~L~~aL~~~~~~ 75 (83)
T cd08319 58 KKATVQSLIQSLKAVEVD 75 (83)
T ss_pred CCCcHHHHHHHHHHcCCC
Confidence 457899999999999987
No 25
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=24.16 E-value=45 Score=22.57 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=9.3
Q ss_pred EEeHHHHHHHHhh
Q 042138 90 IRTVEHLLSALEA 102 (295)
Q Consensus 90 V~TVEHLlAAL~g 102 (295)
-=++||||.||..
T Consensus 12 ~i~~eHlL~all~ 24 (53)
T PF02861_consen 12 YISPEHLLLALLE 24 (53)
T ss_dssp SE-HHHHHHHHHH
T ss_pred cccHHHHHHHHHh
Confidence 3478999999864
No 26
>PHA00442 host recBCD nuclease inhibitor
Probab=23.60 E-value=44 Score=25.06 Aligned_cols=14 Identities=57% Similarity=0.724 Sum_probs=12.2
Q ss_pred HHHHHHhhCCCceE
Q 042138 95 HLLSALEAKGVDNC 108 (295)
Q Consensus 95 HLlAAL~glgIDN~ 108 (295)
-.|-||.+|||||-
T Consensus 30 ~~L~~Lea~GVDNW 43 (59)
T PHA00442 30 EFLKALRACGVDNW 43 (59)
T ss_pred HHHHHHHHcCCcch
Confidence 46889999999994
No 27
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=22.69 E-value=26 Score=31.16 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=18.4
Q ss_pred eEEEeHHHHHHHHhhCCCce---EEEEE
Q 042138 88 VQIRTVEHLLSALEAKGVDN---CKIEI 112 (295)
Q Consensus 88 ~~V~TVEHLlAAL~glgIDN---~~Iei 112 (295)
..++|+|||+|.+.--..+- =+|++
T Consensus 50 ~~lHTlEHL~A~~lRn~~~~~~~~iI~~ 77 (157)
T PF02664_consen 50 AALHTLEHLFATYLRNHLDGDKDKIIDF 77 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTEEEEEE
T ss_pred cchhHHHHHHHHHHhcCccCCCCeEEEe
Confidence 35899999999987766652 34666
No 28
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.47 E-value=35 Score=29.43 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEeHHHHHHHHhhCCCceEEEEE
Q 042138 89 QIRTVEHLLSALEAKGVDNCKIEI 112 (295)
Q Consensus 89 ~V~TVEHLlAAL~glgIDN~~Iei 112 (295)
-++||||.||||.-.+-|++.=.+
T Consensus 8 pi~~V~aF~aA~~~~d~~~avr~~ 31 (130)
T COG4308 8 PIRTVEAFLAALQEDDGDAAVRRL 31 (130)
T ss_pred cHHHHHHHHHHHHhcCccHHHHHh
Confidence 589999999999999998875433
Done!