Query 042138
Match_columns 295
No_of_seqs 119 out of 735
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p3g_A UDP-3-O-[3-hydroxymyris 100.0 1E-101 5E-106 725.9 27.4 255 23-294 2-278 (300)
2 3uhm_A UDP-3-O-[3-hydroxymyris 100.0 1E-101 3E-106 726.8 26.0 255 23-294 2-277 (299)
3 3p3c_A UDP-3-O-[3-hydroxymyris 100.0 5E-101 2E-105 714.8 25.6 249 24-294 2-265 (274)
4 1dar_A EF-G, elongation factor 46.7 57 0.0019 33.1 8.4 76 24-113 483-568 (691)
5 1pkp_A Ribosomal protein S5; 2 41.7 14 0.00049 31.1 2.6 28 26-59 79-106 (150)
6 2vqe_E 30S ribosomal protein S 39.6 16 0.00056 31.2 2.6 29 25-59 73-101 (162)
7 2xex_A Elongation factor G; GT 35.6 51 0.0018 33.5 6.0 76 24-113 482-567 (693)
8 3r8n_E 30S ribosomal protein S 35.1 15 0.0005 31.0 1.6 30 24-59 68-97 (150)
9 3i1m_E 30S ribosomal protein S 34.0 15 0.00053 31.5 1.6 30 24-59 77-106 (167)
10 1j6x_A Autoinducer-2 productio 28.3 10 0.00034 32.7 -0.5 24 88-112 52-75 (160)
11 3u5c_C Guanine nucleotide-bind 28.2 31 0.001 31.7 2.6 30 24-59 150-179 (254)
12 3j20_F 30S ribosomal protein S 26.3 51 0.0018 29.9 3.7 37 17-59 130-166 (236)
13 1vje_A Autoinducer-2 productio 24.9 12 0.0004 32.4 -0.7 24 88-112 54-77 (166)
14 1j98_A Autoinducer-2 productio 24.4 15 0.00051 31.5 -0.2 25 88-112 51-79 (157)
15 3bbn_E Ribosomal protein S5; s 23.3 42 0.0014 31.6 2.6 28 26-59 221-248 (308)
16 2xzm_E Ribosomal protein S5 co 21.7 33 0.0011 32.1 1.6 28 26-59 153-180 (296)
No 1
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=100.00 E-value=1.4e-101 Score=725.91 Aligned_cols=255 Identities=34% Similarity=0.522 Sum_probs=240.7
Q ss_pred cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecC-CeEEEeHHHHH
Q 042138 23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKD-GVQIRTVEHLL 97 (295)
Q Consensus 23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~-~~~V~TVEHLl 97 (295)
++|+||+++|+++|+|||||++|+|||+|||+|+||+|.+ +.+.|||.+++|.+|+|||+|+++ +++|+||||||
T Consensus 2 ~~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGi~F~R~Dl~~~~~I~A~~~~V~~T~l~T~L~~~~g~~V~TVEHll 81 (300)
T 3p3g_A 2 IKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLN 81 (300)
T ss_dssp CEEEEESSCEEEEEECTTTCSEEEEEEECCCTTCCEEEEECSSSSCEEEECCGGGEECCSSSCEEECTTCCEEECCHHHH
T ss_pred CCccccCCeEEEEEEEeccCcEEEEEEEeCCCCCCEEEEEccCCCCceEeeeHHHcccccceeEeecCCCcEEEEHHHHH
Confidence 4599999999999999999999999999999999999954 347899999999999999999988 89999999999
Q ss_pred HHHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE--EeCCeEEEEeeCCC
Q 042138 98 SALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW--IREDSFVAAFPSQK 163 (295)
Q Consensus 98 AAL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~--~~~~~~i~~~P~~~ 163 (295)
|||+|||||||+||| +|+|+|||||||.||+++|++||++ +|+ .++++|+.++|+++
T Consensus 82 AAL~g~gIDN~~Iev---------dg~EvPImDGSA~~fv~~i~~aGi~eq~a~r~~~~i~~~v~v~~g~~~~~~~P~~~ 152 (300)
T 3p3g_A 82 AALAGLGIDNIVIEV---------NAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNG 152 (300)
T ss_dssp HHHHHHTCCSEEEEE---------SSSBCCCTTSSSHHHHHHHHHHCEEEEEEECCEEEECSCEEEEETTEEEEEECCSS
T ss_pred HHHHhCCCceEEEEE---------cCCCCCccCCchHHHHHHHHHcCCeecCCcccEEEeCcEEEEEECCEEEEEEeCCC
Confidence 999999999999999 4999999999999999999999997 122 18899999999999
Q ss_pred eEEEEEEeCCCCCCcce--eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CC
Q 042138 164 VQISYGIDFPQVPAIGC--QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PL 240 (295)
Q Consensus 164 l~it~~Idf~~~~~Ig~--Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~L 240 (295)
|+|+|+|||+ ||+||+ |+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|||+ +|
T Consensus 153 ~~i~~~IdF~-~p~Ig~~~Q~~~-~~~~~~~f~~eIa~ARTFgf~~eve~L~~~GLa~GGsLdNAiVi~-~~~vlN~~gL 229 (300)
T 3p3g_A 153 FSLDFTIDFN-HPAIDSSNQRYA-MNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVD-DYRVLNEDGL 229 (300)
T ss_dssp EEEEEECCCC-CTTSCGGGSEEE-EECCHHHHHHHTTTCCCEEEHHHHHHHHHTTCSTTCCTTTCEEEC-SSSBCSTTCC
T ss_pred cEEEEEEECC-CcccCCcccEEE-EecCHHHHHHhCCCccccccHHHHHHHHHCCcccccCccceEEEc-CCcccCCCCC
Confidence 9999999998 899999 9999 889999999999999999999999999999999999999999997 5899997 79
Q ss_pred CCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 241 RFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 241 Rf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
||+||||||||||+||||||+|+| ++|||+|||+||++|++|+|+|+++
T Consensus 230 Rf~dE~VRHKiLD~IGDLaL~G~p-----i~G~~~a~k~GH~ln~~l~r~L~~~ 278 (300)
T 3p3g_A 230 RFEDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALNNKLLQAVLAK 278 (300)
T ss_dssp SSTTHHHHHHHHHHHHHHGGGSSC-----EEEEEEEESCCHHHHHHHHHHHHHC
T ss_pred cCCCchhhHHHHHHHHHHHhcCCC-----eEEEEEEEcCChHHHHHHHHHHHhC
Confidence 999999999999999999999753 5799999999999999999999875
No 2
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=100.00 E-value=9.6e-102 Score=726.79 Aligned_cols=255 Identities=36% Similarity=0.518 Sum_probs=241.0
Q ss_pred cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138 23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS 98 (295)
Q Consensus 23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA 98 (295)
++|+||+++|+++|+|||||++|+|||+|||+|+||+|.+ +.+.|||.+++|.+|+|||+|+++|++|+|||||||
T Consensus 2 ~~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGi~F~R~Dl~~~~~I~A~~~~V~~T~l~T~L~~~g~~V~TVEHllA 81 (299)
T 3uhm_A 2 IKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLS 81 (299)
T ss_dssp CEEEEESSCEEEEEEBTTTCCEEEEEEECCCTTCCEEEEETTSSSCEEEECCGGGEEECSSSCEEEETTEEEBCCHHHHH
T ss_pred CCccccCCeEEEEEEEeccCcEEEEEEEeCCCCCCEEEEEccCCCCceEeeeHHHcccccceeEEccCCEEEEEHHHHHH
Confidence 4599999999999999999999999999999999999964 347899999999999999999999999999999999
Q ss_pred HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE--EeCCeEEEEeeCCCe
Q 042138 99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW--IREDSFVAAFPSQKV 164 (295)
Q Consensus 99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~--~~~~~~i~~~P~~~l 164 (295)
||+|||||||+||| +|+|+|||||||.||+++|++||++ +|+ .++++|+.++|+++|
T Consensus 82 AL~g~gIDN~~Iev---------dg~EvPImDGSA~~fv~~i~~aGi~eq~a~r~~~~i~~~v~v~~g~~~~~~~P~~~~ 152 (299)
T 3uhm_A 82 AMAGLGIDNAYVEL---------SASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGF 152 (299)
T ss_dssp HHHHTTCCCEEEEE---------SSSBCBCTTSSSHHHHHHHHHHCEEEEEEECCEEEECSCEEEEETTEEEEEECCSSE
T ss_pred HHHhCCCceEEEEE---------cCCCCCccCCchHHHHHHHHHcCCeecCCcccEEEECcEEEEEECCEEEEEEeCCCc
Confidence 99999999999999 4999999999999999999999997 122 188999999999999
Q ss_pred EEEEEEeCCCCCCcce--eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCC
Q 042138 165 QISYGIDFPQVPAIGC--QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLR 241 (295)
Q Consensus 165 ~it~~Idf~~~~~Ig~--Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LR 241 (295)
+|+|+|||+ ||+||+ |+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|||+ +||
T Consensus 153 ~i~~~IdF~-~p~Ig~~~Q~~~-~~~~~~~f~~eIa~ARTFgf~~eve~L~~~GLa~GGsLdNAiVi~-~~~vlN~~gLR 229 (299)
T 3uhm_A 153 KVSFEIDFD-HPVFRGRTQQAS-VDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLR 229 (299)
T ss_dssp EEEEEECCC-SGGGTTCCEEEE-EECCHHHHHHHTTTCCCEEEGGGHHHHHHHTCCTTCSTTTSEEEC-SSSBCCTTCCS
T ss_pred EEEEEEECC-CccCCCcccEEE-EEeCHHHHHHhCCCccccccHHHHHHHHHCCcccccCccceEEEc-CCcccCCCCcc
Confidence 999999998 899999 9999 889999999999999999999999999999999999999999997 5899997 799
Q ss_pred CCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 242 f~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
|+||||||||||+||||||+|+| ++|||+|||+||++|++|+|+|+++
T Consensus 230 f~dE~VRHKiLD~IGDLaL~G~p-----i~G~~~a~k~GH~ln~~l~r~L~~~ 277 (299)
T 3uhm_A 230 YEDEFVKHKILDAIGDLYLLGNS-----LIGEFRGFKSGHALNNQLLRTLIAD 277 (299)
T ss_dssp STTHHHHHHHHHHHHHHHTTSSE-----EEEEEEEESCCHHHHHHHHHHHHHC
T ss_pred CCCchhhHHHHHHHHHHHhcCCC-----ceEEEEEECCChHHHHHHHHHHHhC
Confidence 99999999999999999999753 5799999999999999999999874
No 3
>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*
Probab=100.00 E-value=4.7e-101 Score=714.83 Aligned_cols=249 Identities=34% Similarity=0.526 Sum_probs=236.3
Q ss_pred ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEccCceeecccccccccceeeeeecCCeEEEeHHHHHHHHhhC
Q 042138 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAK 103 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAAL~gl 103 (295)
+|+||+++|+++|+|||||++|+|||+|||+|+||+|.++.+.|||.+++|.+|++||+|++++++|+|||||||||+||
T Consensus 2 ~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGi~F~R~~~~I~A~~~~V~~t~l~T~L~~~g~~V~TVEHllAAL~g~ 81 (274)
T 3p3c_A 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLL 81 (274)
T ss_dssp EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTEEEESSGGGEEECSSSCEEEETTEEEBCCHHHHHHHHHH
T ss_pred CccccCCcEEEEEEEeccCcEEEEEEEeCCCCCCEEEEeCCceEeccHHHeeeecceeEEccCCEEEEeHHHHHHHHHhC
Confidence 59999999999999999999999999999999999998766889999999999999999999999999999999999999
Q ss_pred CCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE--EeCCeEEEEeeCCCeEEEEE
Q 042138 104 GVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW--IREDSFVAAFPSQKVQISYG 169 (295)
Q Consensus 104 gIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~--~~~~~~i~~~P~~~l~it~~ 169 (295)
|||||+|||| |+|+|||||||.||+++|++ |++ +|+ .++++|+.++|+++|+|+|+
T Consensus 82 gIDN~~Ievd---------g~EvPImDGSA~~fv~~i~~-Gi~eq~a~r~~~~i~~~v~v~~g~~~i~~~P~~~~~i~~~ 151 (274)
T 3p3c_A 82 EITNVTIEVI---------GNEIPILDGSGWEFYEAIRK-NILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYE 151 (274)
T ss_dssp TCCSEEEEEE---------SSBCCCTTSSSHHHHHHHHT-TEEEEEEECCCEECCSCEEEEETTEEEEEECCSSCEEEEE
T ss_pred CCceEEEEEc---------CCCCCccCCchHHHHHHHHh-hhhhccCccceEEeccEEEEEeCCEEEEEEeCCCcEEEEE
Confidence 9999999995 99999999999999999999 997 222 18899999999999999999
Q ss_pred EeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCCCCCcch
Q 042138 170 IDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFPDEPCR 248 (295)
Q Consensus 170 Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf~dE~vR 248 (295)
|||+ | +||+|+++ ++ ++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|||+ +|||+|||||
T Consensus 152 IdF~-~-~Ig~Q~~~-~~---~~f~~eIa~ARTFgf~~eve~L~~~GLa~GGsLdNAiV~~-~~~vlN~~gLR~~dE~vR 224 (274)
T 3p3c_A 152 GEFK-N-FLGRQKFT-FV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYENEPVR 224 (274)
T ss_dssp EECS-S-TTCEEEEE-EE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTTCCTTTCEEEC-SSCBCSTTCCSSTTHHHH
T ss_pred EECC-c-ccceEEEe-ee---hhHHhhcccccccccHHHHHHHHHCCcccccCcccEEEEc-CCcccCCCCCcCCCchhh
Confidence 9998 8 99999999 65 8999999999999999999999999999999999999997 5899998 7999999999
Q ss_pred hhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138 249 HKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV 294 (295)
Q Consensus 249 HKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~ 294 (295)
|||||+||||||+|+| ++|||+|||+||++|++|+|+|+++
T Consensus 225 HKiLD~IGDL~L~G~p-----i~g~~~a~k~GH~ln~~l~~~L~~~ 265 (274)
T 3p3c_A 225 HKVFDLIGDLYLLGSP-----VKGKFYSFRGGHSLNVKLVKELAKK 265 (274)
T ss_dssp HHHHHHHHHHGGGSSC-----EECEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-----ceEEEEEEcCchHHHHHHHHHHHhC
Confidence 9999999999999763 5799999999999999999999864
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=46.71 E-value=57 Score=33.12 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=44.2
Q ss_pred ccccccceeEEEEEEeecC--------CeEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeH
Q 042138 24 LQQTLAGFIEKTGKTLHSG--------NVSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTV 93 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG--------~~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TV 93 (295)
+.-||.++... .|-|.- ..+.+++.|.+.+.|+.|.- .+..+|-.+...+.+...-++..|
T Consensus 483 yrEti~~~~~~--~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G------- 553 (691)
T 1dar_A 483 YRETITKPVDV--EGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSG------- 553 (691)
T ss_dssp CEEECSSCEEE--EEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSC-------
T ss_pred EEEeeccceee--eeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcC-------
Confidence 35688887764 455542 26899999999999999952 122233211111111111111111
Q ss_pred HHHHHHHhhCCCceEEEEEe
Q 042138 94 EHLLSALEAKGVDNCKIEIH 113 (295)
Q Consensus 94 EHLlAAL~glgIDN~~Iei~ 113 (295)
.|.+.-+.++.|.|.
T Consensus 554 -----~l~g~pv~~v~v~l~ 568 (691)
T 1dar_A 554 -----PLIGFPVVDIKVTLY 568 (691)
T ss_dssp -----TTTSCCBCSEEEEEE
T ss_pred -----CccCCceeeEEEEEE
Confidence 268899999999995
No 5
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=41.70 E-value=14 Score=31.12 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=21.4
Q ss_pred ccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 26 QTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 26 ~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
+||-.+++ |-| | .+.|.+.|||.++||+
T Consensus 79 ~Tip~~v~----gk~-g-s~~V~l~Pap~GtGii 106 (150)
T 1pkp_A 79 TTIPHEVI----GHF-G-AGEIILKPASEGTGVI 106 (150)
T ss_dssp TBCSSCEE----EEE-T-TEEEEEEECCTTCCEE
T ss_pred ceeeEEEE----EEE-C-CEEEEEEECCCCCccc
Confidence 78877764 223 2 3899999999999996
No 6
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=39.59 E-value=16 Score=31.21 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=21.9
Q ss_pred cccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 25 Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
+.||-.++. |-| | .+.|.+.|||.++||+
T Consensus 73 ~~TIp~~v~----gk~-g-s~~V~l~Pap~GtGii 101 (162)
T 2vqe_E 73 NGTIPHEIE----VEF-G-ASKIVLKPAAPGTGVI 101 (162)
T ss_dssp TTSCSSCEE----EEE-T-TEEEEEEECCTTSCEE
T ss_pred CCcccEEEE----EEe-C-cEEEEEEECCCCccee
Confidence 368877765 333 2 3899999999999996
No 7
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=35.57 E-value=51 Score=33.46 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=43.9
Q ss_pred ccccccceeEEEEEEeecC--------CeEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeH
Q 042138 24 LQQTLAGFIEKTGKTLHSG--------NVSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTV 93 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG--------~~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TV 93 (295)
+.-||.++... .|-|.- ..+.+++.|.+.+.|+.|.- .+..+|-.+...+.+...-++..|
T Consensus 482 yrEti~~~~~~--~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G------- 552 (693)
T 2xex_A 482 YRETFKSSAQV--QGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENG------- 552 (693)
T ss_dssp CEEEESSCEEE--EEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTC-------
T ss_pred EEEEeccccce--eEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcC-------
Confidence 35688887764 455642 26899999999999999952 122233211111111110011111
Q ss_pred HHHHHHHhhCCCceEEEEEe
Q 042138 94 EHLLSALEAKGVDNCKIEIH 113 (295)
Q Consensus 94 EHLlAAL~glgIDN~~Iei~ 113 (295)
.|.+.-+.|+.|.|.
T Consensus 553 -----~l~g~pv~~v~v~l~ 567 (693)
T 2xex_A 553 -----VLAGYPLIDVKAKLY 567 (693)
T ss_dssp -----SSSSCCBCSEEEEEE
T ss_pred -----CccCCceeeEEEEEE
Confidence 167888999999995
No 8
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=35.08 E-value=15 Score=31.04 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=21.9
Q ss_pred ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
..+||-.+++ | -+ ..+.|.+.|||.++||+
T Consensus 68 ~~~Tip~~v~--g--k~--gs~~V~l~Pap~GtGii 97 (150)
T 3r8n_E 68 NNGTLQHPVK--G--VH--TGSRVFMQPASEGTGII 97 (150)
T ss_dssp SSSSCSSCEE--E--EE--TTEEEEEECCCCSSCCB
T ss_pred CCCeeeeEEe--e--EE--ccEEEEEEcCCCcCcee
Confidence 4568877764 2 22 23788999999999995
No 9
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=33.95 E-value=15 Score=31.50 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=21.9
Q ss_pred ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
..+||-.+++ | -| ..+.|.+.|||.++||+
T Consensus 77 ~~~Tip~~v~--g--k~--gs~~V~l~Pap~GtGii 106 (167)
T 3i1m_E 77 NNGTLQHPVK--G--VH--TGSRVFMQPASEGTGII 106 (167)
T ss_dssp BTTBCSSCEE--E--EE--TTEEEEEECCCCSSSCB
T ss_pred CCCeeeeEee--e--ee--ccEEEEEEcCCCcccee
Confidence 4568877664 2 22 23788999999999996
No 10
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=28.27 E-value=10 Score=32.65 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.2
Q ss_pred eEEEeHHHHHHHHhhCCCceEEEEE
Q 042138 88 VQIRTVEHLLSALEAKGVDNCKIEI 112 (295)
Q Consensus 88 ~~V~TVEHLlAAL~glgIDN~~Iei 112 (295)
..++|+|||+|.+.---.|+ +|++
T Consensus 52 ~~iHTlEHL~A~~lRnh~~~-iId~ 75 (160)
T 1j6x_A 52 PSLHSLEHLVAEIIRNHANY-VVDW 75 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCSC-EEEE
T ss_pred cchhHHHHHHHHHHhhCCCC-eEEE
Confidence 35899999999997766665 5777
No 11
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Probab=28.19 E-value=31 Score=31.66 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=21.1
Q ss_pred ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
.-+||-.+|+ |-+ ..+.|.+.|||.++||+
T Consensus 150 ~~hTIp~~V~----Gk~--Gs~~V~L~PAp~GtGIi 179 (254)
T 3u5c_C 150 QPHSLATKTT----GKC--GSVTVRLIPAPRGSGIV 179 (254)
T ss_dssp SCCEESSCEE----EEE--TTEEEEEEECCTTCCEE
T ss_pred CCcceeeEEE----eee--cceEEEEecCCCCcCee
Confidence 3467766654 223 34688999999999995
No 12
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.29 E-value=51 Score=29.85 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=24.7
Q ss_pred eecCCCcccccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 17 SWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 17 ~~~~~~~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
+|...-..-+||-.+|+ |. | ..+.|.+.|||.++||+
T Consensus 130 ~W~~~~g~~hTIp~~V~--Gk--~--Gs~~V~L~PAp~GtGIi 166 (236)
T 3j20_F 130 SWECRCRRPHSVPFAVE--GK--E--GSVRVRLIPGPRGLGLV 166 (236)
T ss_dssp CSSSCCSSCCBCSSCEE--EE--E--TTEEEEEECCCSSCCCB
T ss_pred cccccCCCCCceeeEEE--EE--E--CCEEEEEEcCCCcCCcc
Confidence 45433334578866654 32 2 34788999999999995
No 13
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=24.88 E-value=12 Score=32.40 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.6
Q ss_pred eEEEeHHHHHHHHhhCCCceEEEEE
Q 042138 88 VQIRTVEHLLSALEAKGVDNCKIEI 112 (295)
Q Consensus 88 ~~V~TVEHLlAAL~glgIDN~~Iei 112 (295)
..++|+|||+|.+.---.|+ +|++
T Consensus 54 ~~iHTlEHL~A~~lRnh~~~-iId~ 77 (166)
T 1vje_A 54 AAIHTLEHLLAGYMRDHLEG-VVDV 77 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-EEEE
T ss_pred cchhHHHHHHHHHHhcCCCC-eEEE
Confidence 35899999999996666655 4777
No 14
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=24.35 E-value=15 Score=31.49 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=17.4
Q ss_pred eEEEeHHHHHHHHhhCCCc----eEEEEE
Q 042138 88 VQIRTVEHLLSALEAKGVD----NCKIEI 112 (295)
Q Consensus 88 ~~V~TVEHLlAAL~glgID----N~~Iei 112 (295)
..++|+|||+|-+.---.+ .=+|++
T Consensus 51 ~~iHTlEHL~A~~lRnh~~~~~~~~iId~ 79 (157)
T 1j98_A 51 DTIHTLEHLLAFTIRSHAEKYDHFDIIDI 79 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred ccchHHHHHHHHHHhcCccccCCCCEEEe
Confidence 3589999999999554443 124666
No 15
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.26 E-value=42 Score=31.57 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=21.0
Q ss_pred ccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 26 QTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 26 ~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
+||-.+|. |-| | .+.|.+.|||.++||+
T Consensus 221 hTIph~V~----Gk~-G-s~~V~L~PAP~GTGIi 248 (308)
T 3bbn_E 221 LTFPHRNE----ADY-G-AARVMLRPAAPGTGVI 248 (308)
T ss_dssp SBCSSCEE----EEE-T-TEEEEEEECCTTCCEE
T ss_pred cccceEEE----EEE-e-eEEEEEEECCCCCcee
Confidence 58876653 333 2 3899999999999996
No 16
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Probab=21.71 E-value=33 Score=32.11 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred ccccceeEEEEEEeecCCeEEEEEeecCCCCeEE
Q 042138 26 QTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRY 59 (295)
Q Consensus 26 ~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~ 59 (295)
+||-.+|+ |-| | .+.|.|.|||.++||+
T Consensus 153 hTIph~V~----Gk~-G-s~~V~L~PAP~GTGIi 180 (296)
T 2xzm_E 153 HTIPQKIT----GKS-G-SVRIRLVPAPRGTGIV 180 (296)
T ss_dssp CBCSSCEE----EEE-T-TEEEEEECCCSSCCCB
T ss_pred CeeeEEEE----EEE-C-cEEEEEEECCCCccee
Confidence 57776654 333 2 3889999999999995
Done!