Query 042142
Match_columns 376
No_of_seqs 151 out of 1825
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 1.3E-52 4.4E-57 398.0 28.9 334 31-375 6-351 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 9.5E-53 3.3E-57 400.2 24.4 339 29-375 5-357 (507)
3 3tbg_A Cytochrome P450 2D6; mo 100.0 7.7E-51 2.6E-55 384.4 28.0 339 27-376 4-351 (479)
4 2hi4_A Cytochrome P450 1A2; CY 100.0 6.9E-51 2.4E-55 386.1 27.3 335 31-375 14-360 (495)
5 3e6i_A CYPIIE1, P450-J, cytoch 100.0 4.3E-50 1.5E-54 379.0 28.6 332 29-375 6-345 (476)
6 3k9v_A 1,25-dihydroxyvitamin D 100.0 7E-50 2.4E-54 378.1 27.2 333 25-375 16-361 (482)
7 3czh_A Cytochrome P450 2R1; vi 100.0 3.3E-50 1.1E-54 380.0 24.6 334 30-375 9-351 (481)
8 3nxu_A Cytochrome P450 3A4; al 100.0 5.4E-51 1.9E-55 386.0 16.8 327 33-375 14-350 (485)
9 3qz1_A Steroid 21-hydroxylase; 100.0 3.5E-50 1.2E-54 381.6 22.0 328 27-375 23-360 (496)
10 1po5_A Cytochrome P450 2B4; ox 100.0 1.6E-49 5.5E-54 375.0 25.7 330 32-375 9-346 (476)
11 3s79_A Cytochrome P450 19A1; o 100.0 9.8E-50 3.4E-54 379.1 24.3 326 30-375 42-372 (503)
12 2fdv_A Cytochrome P450 2A6; CY 100.0 2.2E-49 7.6E-54 374.0 26.6 331 31-375 8-346 (476)
13 1r9o_A Cytochrome P450 2C9; mo 100.0 2.7E-49 9.2E-54 373.6 25.7 331 31-375 9-347 (477)
14 3n9y_A Cholesterol SIDE-chain 100.0 7.6E-47 2.6E-51 357.8 27.3 333 28-375 4-353 (487)
15 2ij2_A Cytochrome P450 BM3; mo 100.0 5.2E-47 1.8E-51 357.0 24.5 324 33-375 3-330 (470)
16 3gw9_A Sterol 14alpha-demethyl 100.0 1.8E-47 6.2E-52 358.5 20.1 324 32-375 2-331 (450)
17 3ld6_A Lanosterol 14-alpha dem 100.0 1.3E-47 4.6E-52 360.4 17.4 320 32-375 10-331 (461)
18 2ve3_A Putative cytochrome P45 100.0 3.4E-46 1.2E-50 349.1 21.6 314 28-375 7-320 (444)
19 2cib_A Cytochrome P450 51; hem 100.0 1.2E-45 4E-50 346.5 23.2 318 33-375 4-323 (455)
20 3dbg_A Putative cytochrome P45 100.0 1.6E-45 5.3E-50 346.9 18.2 316 32-375 22-340 (467)
21 3mdm_A Cholesterol 24-hydroxyl 100.0 2.1E-44 7.3E-49 338.2 24.5 307 51-375 9-321 (456)
22 3i3k_A Lanosterol 14-alpha dem 100.0 6.4E-45 2.2E-49 342.2 17.0 322 29-375 7-331 (461)
23 3v8d_A Cholesterol 7-alpha-mon 100.0 7.5E-43 2.6E-47 330.7 10.6 320 28-372 8-342 (491)
24 3dax_A Cytochrome P450 7A1; ch 100.0 1.3E-41 4.5E-46 322.2 15.1 320 27-372 7-342 (491)
25 2cd8_A Cytochrome P450 monooxy 100.0 2.9E-39 1E-43 300.8 21.1 284 28-374 21-311 (436)
26 3b6h_A Prostacyclin synthase; 100.0 1.4E-39 4.8E-44 308.8 17.6 322 26-372 11-344 (498)
27 1jfb_A Nitric-oxide reductase 100.0 7.6E-37 2.6E-41 282.2 26.5 282 34-375 2-289 (404)
28 3dsk_A Cytochrome P450 74A, ch 100.0 9.9E-39 3.4E-43 302.7 13.5 319 29-375 24-363 (495)
29 1ued_A P450 OXYC, P450 monooxy 100.0 9E-37 3.1E-41 281.6 21.7 275 31-375 8-294 (406)
30 1cpt_A Cytochrome P450-TERP; o 100.0 3.9E-37 1.3E-41 286.1 19.4 295 30-375 3-316 (428)
31 3b98_A Prostaglandin I2 syntha 100.0 7.7E-38 2.6E-42 295.1 13.4 310 26-372 11-325 (475)
32 1n97_A CYP175A1; electron tran 100.0 2.2E-37 7.5E-42 284.3 13.0 267 37-375 3-270 (389)
33 1izo_A P450bsbeta, cytochrome 100.0 3.9E-36 1.3E-40 278.7 21.2 282 41-375 8-292 (417)
34 2zbx_A Cytochrome P450-SU1; be 100.0 2.4E-35 8.1E-40 272.7 25.3 278 33-374 5-292 (412)
35 3awm_A Fatty acid alpha-hydrox 100.0 1.4E-35 4.7E-40 274.8 22.9 284 35-375 4-290 (415)
36 3dan_A Cytochrome P450 74A2; A 100.0 5.7E-36 2E-40 282.2 17.8 319 30-375 6-346 (473)
37 2zwu_A Camphor 5-monooxygenase 100.0 1.9E-35 6.6E-40 273.2 20.5 281 28-375 6-298 (415)
38 3oo3_A OXY protein; cytochrome 100.0 8.3E-35 2.8E-39 266.8 24.0 263 49-375 9-275 (384)
39 2jjn_A Cytochrome P450 113A1; 100.0 4.3E-35 1.5E-39 270.9 20.1 280 24-375 10-290 (411)
40 3aba_A Cytochrome P450; oxidor 100.0 3E-34 1E-38 264.5 24.7 263 49-374 16-285 (403)
41 1s1f_A Putative cytochrome P45 100.0 9.4E-35 3.2E-39 268.1 21.0 275 32-374 7-289 (406)
42 1odo_A Putative cytochrome P45 100.0 1.2E-34 4.1E-39 267.7 20.1 269 49-375 12-291 (408)
43 3tyw_A Putative cytochrome P45 100.0 6.7E-34 2.3E-38 263.4 23.3 265 49-375 26-298 (417)
44 3abb_A CYP105D6, cytochrome P4 100.0 1.2E-34 4.3E-39 267.6 17.9 264 48-374 20-291 (408)
45 3a4g_A Vitamin D hydroxylase; 100.0 1.3E-33 4.4E-38 260.7 24.4 262 49-374 17-284 (411)
46 2wm5_A CYP124, putative cytoch 100.0 1.2E-33 4.2E-38 262.7 24.0 270 52-375 44-324 (435)
47 2y5n_A MYCG, P-450-like protei 100.0 1.1E-33 3.9E-38 261.5 23.1 264 49-374 34-302 (417)
48 4fb2_A P450CIN; heme, monooxyg 100.0 4.9E-34 1.7E-38 262.8 20.2 262 49-374 16-280 (398)
49 3tkt_A Cytochrome P450; aromat 100.0 1.3E-33 4.3E-38 263.9 22.1 275 54-375 47-338 (450)
50 3ivy_A Cytochrome P450 CYP125; 100.0 5.1E-34 1.7E-38 265.3 18.9 281 33-375 18-315 (433)
51 2z36_A MOXA, cytochrome P450 t 100.0 1.8E-33 6.3E-38 259.9 21.1 264 49-374 19-293 (413)
52 2xkr_A CYP142, putative cytoch 100.0 3.2E-33 1.1E-37 257.4 22.5 262 51-375 17-279 (398)
53 1z8o_A 6-deoxyerythronolide B 100.0 1.4E-33 4.8E-38 260.2 20.1 263 50-375 12-290 (404)
54 2xbk_A PIMD protein; epoxidati 100.0 1.2E-32 4E-37 253.5 26.0 256 50-374 24-289 (404)
55 3ejb_B Biotin biosynthesis cyt 100.0 3.7E-33 1.3E-37 257.5 21.9 267 51-375 12-283 (404)
56 1gwi_A CYP154C1, cytochrome P4 100.0 3.4E-33 1.2E-37 258.1 20.7 264 49-375 14-291 (411)
57 2z3t_A Cytochrome P450; monoxy 100.0 5.5E-33 1.9E-37 257.7 21.5 267 51-374 19-302 (425)
58 1q5d_A P450 epoxidase; cytochr 100.0 2.6E-33 8.9E-38 259.5 19.0 268 50-374 24-302 (419)
59 2uuq_A CYP130, cytochrome P450 100.0 1.2E-32 4.1E-37 254.5 20.7 264 51-375 24-299 (414)
60 3buj_A CALO2; heme, iron, meta 100.0 1.4E-32 4.9E-37 252.9 20.9 260 52-374 13-281 (397)
61 2dkk_A Cytochrome P450; CYP158 100.0 8.1E-33 2.8E-37 255.3 18.4 258 51-374 26-292 (411)
62 3r9b_A Cytochrome P450 164A2; 100.0 8.4E-33 2.9E-37 256.3 18.4 272 49-375 26-305 (418)
63 3mgx_A Putative P450 monooxyge 100.0 1.5E-32 5.2E-37 253.7 19.1 262 51-375 36-303 (415)
64 3nc3_A Cytochrome P450 CYPX; c 100.0 1.1E-32 3.8E-37 256.7 17.7 265 52-375 53-318 (441)
65 3oft_A Cytochrome P450, CYP101 100.0 2.9E-32 9.9E-37 250.9 19.3 260 49-373 21-281 (396)
66 3lxh_A Cytochrome P450; heme, 100.0 3.7E-32 1.3E-36 252.0 20.2 265 51-373 37-303 (421)
67 1lfk_A OXYB, P450 monooxygenas 100.0 1.9E-32 6.6E-37 252.1 17.2 252 58-374 19-284 (398)
68 1n40_A P450 MT2, cytochrome P4 100.0 9.5E-32 3.2E-36 247.2 19.9 259 50-374 14-281 (396)
69 3rwl_A Cytochrome P450 alkane 100.0 2.5E-30 8.6E-35 239.8 23.0 266 52-375 38-314 (426)
70 3p3o_A Cytochrome P450; monoox 100.0 3E-31 1E-35 245.4 12.3 274 40-374 23-301 (416)
71 1io7_A Cytochrome P450 CYP119; 100.0 7.9E-30 2.7E-34 232.2 19.0 246 54-375 1-256 (368)
72 2wiy_A XPLA-heme, cytochrome P 100.0 2.7E-29 9.1E-34 230.7 22.4 263 52-375 20-282 (394)
73 3b4x_A 367AA long hypothetical 100.0 1.8E-29 6E-34 229.7 18.7 244 54-375 1-256 (367)
74 2rfb_A Cytochrome P450; heme, 100.0 7.6E-30 2.6E-34 230.1 15.8 232 63-375 2-235 (343)
75 4dnj_A Putative cytochrome P45 99.9 4E-25 1.4E-29 203.9 18.0 276 39-375 18-300 (412)
76 4dxy_A Cytochrome P450, CYP101 99.9 3.2E-21 1.1E-25 177.7 21.7 250 51-340 36-287 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 99.8 9.5E-22 3.3E-26 177.7 -5.3 223 34-375 35-271 (381)
78 2diu_A KIAA0430 protein; struc 81.2 2.5 8.7E-05 29.0 4.6 61 42-103 12-76 (96)
79 2krb_A Eukaryotic translation 80.2 7.3 0.00025 25.4 6.8 58 43-100 5-74 (81)
80 3lqv_A PRE-mRNA branch site pr 73.2 15 0.00053 25.7 7.4 63 34-98 3-72 (115)
81 1s79_A Lupus LA protein; RRM, 71.8 11 0.00039 26.0 6.2 55 43-99 15-77 (103)
82 2nlw_A Eukaryotic translation 68.1 19 0.00065 24.8 6.7 59 42-100 18-88 (105)
83 1iqt_A AUF1, heterogeneous nuc 65.4 15 0.0005 23.3 5.3 45 55-99 13-66 (75)
84 2mss_A Protein (musashi1); RNA 60.3 21 0.00073 22.5 5.4 46 55-100 13-67 (75)
85 3ns6_A Eukaryotic translation 55.1 26 0.00088 23.9 5.4 43 56-98 27-79 (100)
86 2pe8_A Splicing factor 45; RRM 53.1 17 0.00057 25.3 4.1 65 37-101 6-84 (105)
87 3beg_B Splicing factor, argini 52.7 44 0.0015 23.3 6.5 58 43-102 20-80 (115)
88 2wbr_A GW182, gawky, LD47780P; 52.4 35 0.0012 23.0 5.3 50 41-92 9-61 (89)
89 2kvi_A Nuclear polyadenylated 50.0 51 0.0017 22.0 6.2 58 43-101 14-73 (96)
90 1whx_A Hypothetical protein ri 50.0 61 0.0021 22.4 7.1 58 43-102 14-75 (111)
91 4f25_A Polyadenylate-binding p 49.9 37 0.0013 23.7 5.7 57 42-100 8-72 (115)
92 4fxv_A ELAV-like protein 1; RN 49.7 27 0.00092 23.8 4.7 55 43-99 23-87 (99)
93 3d2w_A TAR DNA-binding protein 47.7 39 0.0013 22.3 5.2 47 41-89 13-63 (89)
94 2kxn_B Transformer-2 protein h 46.9 77 0.0026 22.7 8.3 58 41-100 48-115 (129)
95 1p27_B RNA-binding protein 8A; 46.7 58 0.002 22.1 6.2 56 43-100 27-92 (106)
96 3s7r_A Heterogeneous nuclear r 45.9 30 0.001 22.6 4.4 52 42-95 14-74 (87)
97 1whw_A Hypothetical protein ri 44.9 67 0.0023 21.4 6.5 49 43-93 12-69 (99)
98 1x5p_A Negative elongation fac 43.7 59 0.002 21.7 5.8 52 43-98 19-74 (97)
99 2dgu_A Heterogeneous nuclear r 43.2 57 0.002 22.0 5.7 56 42-99 14-71 (103)
100 2dnz_A Probable RNA-binding pr 43.2 69 0.0024 21.1 6.8 59 42-102 8-76 (95)
101 3v4m_A Splicing factor U2AF 65 42.3 53 0.0018 22.6 5.3 46 56-101 30-87 (105)
102 2la6_A RNA-binding protein FUS 41.6 76 0.0026 21.1 6.8 56 42-99 16-89 (99)
103 2rs2_A Musashi-1, RNA-binding 41.3 65 0.0022 22.2 5.8 51 43-95 29-88 (109)
104 1x5s_A Cold-inducible RNA-bind 41.1 79 0.0027 21.2 6.3 58 42-101 15-82 (102)
105 2dnr_A Synaptojanin-1; RRM dom 41.0 40 0.0014 22.8 4.2 46 54-99 28-74 (91)
106 3ucg_A Polyadenylate-binding p 40.8 48 0.0016 21.5 4.8 45 55-99 20-73 (89)
107 2a3j_A U1 small nuclear ribonu 40.6 61 0.0021 23.3 5.6 60 42-101 32-100 (127)
108 2cpf_A RNA binding motif prote 40.5 57 0.0019 21.7 5.3 56 43-100 9-77 (98)
109 3s6e_A RNA-binding protein 39; 40.3 27 0.00093 24.7 3.5 67 35-101 3-83 (114)
110 2dnm_A SRP46 splicing factor; 40.3 82 0.0028 21.1 6.8 58 42-101 16-83 (103)
111 1m46_B IQ4, IQ4 motif from MYO 40.2 22 0.00076 16.7 1.9 12 329-340 8-19 (26)
112 2hvz_A Splicing factor, argini 40.0 53 0.0018 22.1 5.1 47 55-101 14-65 (101)
113 2dgs_A DAZ-associated protein 39.1 84 0.0029 20.9 7.3 58 42-101 13-79 (99)
114 2d9o_A DNAJ (HSP40) homolog, s 39.1 77 0.0027 21.6 5.7 39 55-93 31-73 (100)
115 2xnq_A Nuclear polyadenylated 38.7 86 0.0029 20.9 6.4 50 43-93 26-76 (97)
116 1nu4_A U1A RNA binding domain; 38.7 70 0.0024 21.1 5.5 55 42-98 11-76 (97)
117 2cqc_A Arginine/serine-rich sp 38.5 76 0.0026 20.8 5.6 50 42-93 18-76 (95)
118 3md1_A Nuclear and cytoplasmic 38.1 58 0.002 20.7 4.8 44 55-98 15-68 (83)
119 2cqi_A Nucleolysin TIAR; RNA r 38.0 65 0.0022 21.7 5.3 55 42-98 18-80 (103)
120 2jwn_A Embryonic polyadenylate 38.0 49 0.0017 23.3 4.8 46 55-100 50-104 (124)
121 2cq4_A RNA binding motif prote 37.9 53 0.0018 22.7 4.9 51 43-95 29-88 (114)
122 2fy1_A RNA-binding motif prote 37.7 87 0.003 21.8 6.0 57 43-101 11-76 (116)
123 4a8x_A RNA-binding protein wit 37.3 81 0.0028 20.2 6.2 55 43-99 8-73 (88)
124 2dgv_A HnRNP M, heterogeneous 37.3 85 0.0029 20.4 6.6 57 43-101 12-76 (92)
125 1oo0_B CG8781-PA, drosophila Y 37.1 95 0.0032 21.1 6.1 54 43-98 30-93 (110)
126 2jvr_A Nucleolar protein 3; RN 36.9 76 0.0026 22.1 5.5 56 42-99 31-93 (111)
127 2jvo_A Nucleolar protein 3; nu 36.5 67 0.0023 22.1 5.2 54 43-98 35-90 (108)
128 1x4g_A Nucleolysin TIAR; struc 36.3 90 0.0031 21.3 5.9 55 43-99 29-87 (109)
129 2cqd_A RNA-binding region cont 35.8 82 0.0028 21.8 5.6 55 43-99 21-84 (116)
130 3zzy_A Polypyrimidine tract-bi 35.7 60 0.0021 23.6 4.8 48 43-92 32-84 (130)
131 1sjr_A Polypyrimidine tract-bi 35.6 86 0.0029 23.9 5.9 54 43-98 50-109 (164)
132 1uaw_A Mouse-musashi-1; RNP-ty 35.6 51 0.0018 20.6 4.2 41 55-95 14-63 (77)
133 3ex7_B RNA-binding protein 8A; 35.1 1.2E+02 0.0039 21.3 7.4 59 42-102 25-93 (126)
134 2ywk_A Putative RNA-binding pr 35.0 65 0.0022 21.2 4.8 54 43-98 20-82 (95)
135 3ulh_A THO complex subunit 4; 34.7 69 0.0024 21.7 5.0 54 43-98 33-95 (107)
136 1wi8_A EIF-4B, eukaryotic tran 34.5 1E+02 0.0034 20.8 5.8 56 42-100 18-83 (104)
137 2bz2_A Negative elongation fac 34.4 72 0.0025 22.6 5.1 54 43-100 43-100 (121)
138 2err_A Ataxin-2-binding protei 34.4 46 0.0016 22.9 4.0 54 43-98 33-94 (109)
139 2cq3_A RNA-binding protein 9; 33.8 1.1E+02 0.0036 20.5 6.6 57 42-100 18-82 (103)
140 2do4_A Squamous cell carcinoma 33.4 1.1E+02 0.0036 20.4 6.7 55 42-98 20-83 (100)
141 2ad9_A Polypyrimidine tract-bi 33.4 1E+02 0.0034 21.9 5.6 50 41-92 33-85 (119)
142 1sjq_A Polypyrimidine tract-bi 33.3 1.1E+02 0.0037 21.2 5.7 49 42-92 19-70 (105)
143 1x5u_A Splicing factor 3B subu 33.1 1.1E+02 0.0038 20.5 8.0 58 42-101 18-85 (105)
144 1p1t_A Cleavage stimulation fa 33.0 83 0.0028 21.1 5.2 49 43-93 12-69 (104)
145 2cpi_A CCR4-NOT transcription 32.9 32 0.0011 23.9 3.0 58 42-101 18-91 (111)
146 1wex_A Hypothetical protein (r 32.8 92 0.0031 21.3 5.3 50 41-92 17-69 (104)
147 2dgo_A Cytotoxic granule-assoc 32.5 96 0.0033 21.3 5.6 57 42-100 18-84 (115)
148 2x1f_A MRNA 3'-END-processing 31.9 1.1E+02 0.0038 20.1 6.1 49 43-93 6-63 (96)
149 2dgx_A KIAA0430 protein; RRM d 31.6 99 0.0034 20.5 5.3 55 43-99 13-78 (96)
150 1x4b_A Heterogeneous nuclear r 31.5 57 0.0019 22.6 4.2 55 43-99 31-94 (116)
151 1x4d_A Matrin 3; structural ge 31.3 1E+02 0.0035 21.1 5.3 54 38-92 14-70 (102)
152 3s8s_A Histone-lysine N-methyl 31.1 1.3E+02 0.0044 20.7 8.0 50 42-93 9-67 (110)
153 3bs9_A Nucleolysin TIA-1 isofo 30.6 92 0.0031 19.9 4.9 49 43-93 10-67 (87)
154 2la4_A Nuclear and cytoplasmic 30.6 1.1E+02 0.0037 20.4 5.4 49 43-93 31-82 (101)
155 1x4c_A Splicing factor, argini 30.4 1.3E+02 0.0044 20.4 6.9 49 43-93 19-69 (108)
156 1jmt_A Splicing factor U2AF 35 30.0 92 0.0031 21.3 4.9 44 58-101 43-96 (104)
157 2jrs_A RNA-binding protein 39; 29.7 1.3E+02 0.0046 20.4 6.3 56 43-100 30-95 (108)
158 2adc_A Polypyrimidine tract-bi 29.5 1.6E+02 0.0053 23.4 7.0 58 43-101 38-100 (229)
159 3p5t_L Cleavage and polyadenyl 29.3 79 0.0027 20.6 4.4 57 43-101 5-73 (90)
160 3mdf_A Peptidyl-prolyl CIS-tra 29.1 1.1E+02 0.0038 19.4 6.4 50 42-93 10-68 (85)
161 1ufw_A Synaptojanin 2; RNP dom 29.1 58 0.002 22.2 3.5 47 54-100 37-84 (95)
162 2d9p_A Polyadenylate-binding p 29.0 1.3E+02 0.0045 20.1 6.5 59 41-101 17-83 (103)
163 1x4e_A RNA binding motif, sing 28.9 88 0.003 20.0 4.5 49 42-92 8-65 (85)
164 2dh8_A DAZ-associated protein 28.9 1.2E+02 0.0042 20.3 5.5 57 42-100 19-84 (105)
165 2qfj_A FBP-interacting repress 28.4 1.6E+02 0.0055 22.7 6.9 49 43-93 32-89 (216)
166 3n9u_C Cleavage and polyadenyl 27.9 1.1E+02 0.0038 22.7 5.5 39 55-93 69-118 (156)
167 2voo_A Lupus LA protein; RNA-b 27.9 74 0.0025 24.8 4.6 54 43-98 113-174 (193)
168 2e5g_A U6 snRNA-specific termi 27.7 1.3E+02 0.0044 19.7 5.3 57 43-101 12-72 (94)
169 2cq1_A PTB-like protein L; RRM 27.2 1.4E+02 0.0047 20.3 5.4 50 41-92 17-69 (101)
170 3pgw_S U1-70K; protein-RNA com 26.4 1E+02 0.0034 27.8 5.7 57 42-100 105-171 (437)
171 2cpd_A Apobec-1 stimulating pr 26.3 1.4E+02 0.0049 19.7 5.9 56 42-99 18-77 (99)
172 2j76_E EIF-4B, EIF4B, eukaryot 26.2 1.2E+02 0.0042 20.2 5.0 55 43-100 23-87 (100)
173 2cq0_A Eukaryotic translation 26.1 67 0.0023 21.6 3.6 49 43-93 19-76 (103)
174 2cqb_A Peptidyl-prolyl CIS-tra 26.0 1.5E+02 0.005 19.7 5.5 57 41-99 14-80 (102)
175 2ytc_A PRE-mRNA-splicing facto 25.9 1.3E+02 0.0045 19.1 6.6 50 42-93 15-67 (85)
176 1h2v_Z 20 kDa nuclear CAP bind 25.8 1.3E+02 0.0045 22.1 5.6 57 42-100 42-108 (156)
177 3ue2_A Poly(U)-binding-splicin 25.7 1.1E+02 0.0038 21.6 4.8 64 39-102 20-100 (118)
178 1wg5_A Heterogeneous nuclear r 25.6 1.6E+02 0.0053 19.8 6.4 57 43-101 19-84 (104)
179 1whv_A Poly(A)-specific ribonu 25.5 1E+02 0.0034 21.2 4.1 38 55-92 29-67 (100)
180 1u6f_A Tcubp1, RNA-binding pro 24.9 1.4E+02 0.0049 21.3 5.5 56 43-100 46-111 (139)
181 2do0_A HnRNP M, heterogeneous 24.8 1.3E+02 0.0044 20.6 5.0 57 42-100 18-83 (114)
182 2e44_A Insulin-like growth fac 24.4 1.5E+02 0.0052 19.3 6.7 57 42-100 18-81 (96)
183 1x5t_A Splicing factor 3B subu 24.3 1E+02 0.0034 20.2 4.2 49 43-93 9-67 (96)
184 2dhg_A TRNA selenocysteine ass 24.2 1.6E+02 0.0055 19.6 7.2 59 41-101 11-80 (104)
185 2div_A TRNA selenocysteine ass 24.2 1.6E+02 0.0054 19.4 6.3 58 42-101 12-80 (99)
186 2dnq_A RNA-binding protein 4B; 24.1 1.5E+02 0.0051 19.1 7.2 58 42-101 11-70 (90)
187 3tyt_A Heterogeneous nuclear r 24.0 1.5E+02 0.0052 23.2 5.8 59 42-101 7-70 (205)
188 2cpj_A Non-POU domain-containi 23.8 1.6E+02 0.0055 19.4 5.4 57 43-101 19-79 (99)
189 2f3j_A RNA and export factor b 23.5 2E+02 0.0067 21.9 6.2 46 55-100 102-156 (177)
190 3r9j_C MINE, cell division top 23.4 49 0.0017 21.5 2.2 20 327-346 24-43 (77)
191 1l3k_A Heterogeneous nuclear r 23.3 1.3E+02 0.0043 22.9 5.3 57 43-101 17-82 (196)
192 1wf0_A TDP-43, TAR DNA-binding 23.0 97 0.0033 20.0 3.9 46 43-90 9-58 (88)
193 1rk8_A CG8781-PA, CG8781-PA pr 22.9 1.4E+02 0.0046 22.4 5.2 54 43-98 76-139 (165)
194 2i2y_A Fusion protein consists 22.6 2.2E+02 0.0076 20.6 7.8 56 43-100 77-137 (150)
195 2kn4_A Immunoglobulin G-bindin 22.5 2.3E+02 0.0078 20.7 7.2 56 43-100 74-139 (158)
196 2cpz_A CUG triplet repeat RNA- 22.5 1.9E+02 0.0065 19.7 6.3 55 43-99 29-93 (115)
197 2cph_A RNA binding motif prote 22.4 1.8E+02 0.0062 19.4 8.7 58 42-101 18-87 (107)
198 2lea_A Serine/arginine-rich sp 21.2 2.1E+02 0.0073 20.4 5.8 56 43-100 51-116 (135)
199 2cpe_A RNA-binding protein EWS 21.0 1.7E+02 0.0057 19.9 5.0 56 43-100 19-92 (113)
200 2xs2_A Deleted in azoospermia- 20.9 60 0.0021 21.8 2.5 53 43-98 13-73 (102)
201 2cq2_A Hypothetical protein LO 20.9 2.2E+02 0.0074 20.0 5.4 53 39-93 25-82 (114)
202 2dis_A Unnamed protein product 20.4 2E+02 0.0069 19.3 6.6 49 43-93 12-71 (109)
203 2dnp_A RNA-binding protein 14; 20.2 1.8E+02 0.0062 18.7 7.2 57 42-100 12-70 (90)
204 2cpy_A RNA-binding protein 12; 20.0 1.3E+02 0.0046 20.6 4.3 53 42-96 18-79 (114)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=1.3e-52 Score=398.02 Aligned_cols=334 Identities=26% Similarity=0.418 Sum_probs=256.7
Q ss_pred CCCCCCCCCCCCccccccccC--CCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccc
Q 042142 31 TSSLPPSPMALPIIGHLHLLA--PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVD 108 (376)
Q Consensus 31 ~~~~ppgp~~~p~lG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~ 108 (376)
..++||||+++|++||++.+. +.++..+.+|+++|||||++++|+.++|+++||+++++++.++...|.+|+......
T Consensus 6 ~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~ 85 (494)
T 3swz_A 6 GAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLD 85 (494)
T ss_dssp ------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHH
T ss_pred CCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 456899999999999999884 357889999999999999999999999999999999999999888898887654444
Q ss_pred ccccCCceeEeccCChhHHHHHHHHHhhcCch--hhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHH
Q 042142 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGG--QTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVS 186 (376)
Q Consensus 109 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~ 186 (376)
....+..++.+..+|+.|+.+||++. +.|+. ..+..+.+.+.+++..+++.+.+ ..+.++|+...+..+++|+|+
T Consensus 86 ~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~t~dvi~ 162 (494)
T 3swz_A 86 IASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLAT--HNGQSIDISFPVFVAVTNVIS 162 (494)
T ss_dssp HHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHH--TTTEEECCHHHHHHHHHHHHH
T ss_pred HhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHH--cCCCcccHHHHHHHHHHHHHH
Confidence 44333345555666999999999975 55652 45677899999999999999876 346789999999999999999
Q ss_pred HHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042142 187 RMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKE 266 (376)
Q Consensus 187 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 266 (376)
.++||.+++..+.....+....+..........+.+++|++++++ ....+.+.+..+.+..++..+++++++..
T Consensus 163 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----- 236 (494)
T 3swz_A 163 LICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFP-NKTLEKLKSHVKIRNDLLNKILENYKEKF----- 236 (494)
T ss_dssp HHHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSC-CSHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 999999887654333333343333333333344566677776653 23344555556666666666665543211
Q ss_pred cCCCCCcccHHHHHhcccccC--------cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHH
Q 042142 267 RGKDYAPMDLLDMLLDISEDE--------SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEI 338 (376)
Q Consensus 267 ~~~~~~~~dll~~ll~~~~~~--------~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei 338 (376)
.+....|+++.+++...+. .....++++++..++.++++||+||||++++|++++|++||++|+|+|+||
T Consensus 237 --~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei 314 (494)
T 3swz_A 237 --RSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEI 314 (494)
T ss_dssp --CTTCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred --cccchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1113469999998643111 012358999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 339 DSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 339 ~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++|.++.++++|+.+||||+|||+|+||++|++|.
T Consensus 315 ~~v~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 351 (494)
T 3swz_A 315 DQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPM 351 (494)
T ss_dssp HHHTCSSSCCCGGGGGTCHHHHHHHHHHHHHSCSSTT
T ss_pred HHhcCCCCCCCHHHHhcCHHHHHHHHHHHHhcCCccc
Confidence 9999988889999999999999999999999999986
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-53 Score=400.24 Aligned_cols=339 Identities=25% Similarity=0.410 Sum_probs=242.7
Q ss_pred CCCCCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccc
Q 042142 29 KITSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVD 108 (376)
Q Consensus 29 ~~~~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~ 108 (376)
.++.+.||||+++|++||++.+.++++..+.+++++||++|++++|+.++|+++||+++++|+.++...|.+++......
T Consensus 5 ~~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 84 (507)
T 3pm0_A 5 TSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR 84 (507)
T ss_dssp -----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH
T ss_pred cCCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH
Confidence 44567899999999999999988899999999999999999999999999999999999999988878888777654333
Q ss_pred ccccCCceeEeccCChhHHHHHHHHHhhcCchhhh------hhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHH
Q 042142 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL------NQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTN 182 (376)
Q Consensus 109 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~ 182 (376)
....+ .++++..+|+.|+++|+.+. +.|+.... ..+.+.+.+++.++++.+.+...++.++|+.+.+..+++
T Consensus 85 ~~~~g-~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~ 162 (507)
T 3pm0_A 85 VVSGG-RSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVA 162 (507)
T ss_dssp HGGGG-TCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHH
T ss_pred hhcCC-CceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHH
Confidence 33222 34456667999999999974 44433222 338899999999999999876556778999999999999
Q ss_pred HHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhccc--chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 183 NVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ--GFGKRLKEVRRKFDNMMERIIKEHQEA 260 (376)
Q Consensus 183 dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (376)
|+|+.++||.+++..+.....+...+..............++|++++++.. ...+.+.+..+.+.+++...++++.+.
T Consensus 163 dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 242 (507)
T 3pm0_A 163 NVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCES 242 (507)
T ss_dssp HHHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998765544344443344444333333344556666554211 123455566667777777777766543
Q ss_pred HHhhhccCCCCCcccHHHHHhcccccCcc------cccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHH
Q 042142 261 RKINKERGKDYAPMDLLDMLLDISEDESS------EIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKA 334 (376)
Q Consensus 261 ~~~~~~~~~~~~~~dll~~ll~~~~~~~~------~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l 334 (376)
.+ .+ ....|+++.++...++..+ +..++++++..++.++++||+||||++++|++++|++||++|+|+
T Consensus 243 ~~---~~---~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl 316 (507)
T 3pm0_A 243 LR---PG---AAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRV 316 (507)
T ss_dssp CC---TT---CCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cc---cc---cCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHH
Confidence 21 11 1356999998854321111 124899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 335 REEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 335 ~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
|+||++++++++.++++++.+||||+|||+||||++|++|.
T Consensus 317 ~~Ei~~~~~~~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~ 357 (507)
T 3pm0_A 317 QAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPV 357 (507)
T ss_dssp HHHHHHHTCTTSCCCGGGGGGCHHHHHHHHHHHHHHCSSCB
T ss_pred HHHHHHhcCCCCCCChhhcccChHHHHHHHHHHhcCCCccc
Confidence 99999999987889999999999999999999999999985
No 3
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=7.7e-51 Score=384.38 Aligned_cols=339 Identities=24% Similarity=0.401 Sum_probs=240.9
Q ss_pred hcCCCCCCCCCCCCCCcccccccc-CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc
Q 042142 27 RSKITSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA 105 (376)
Q Consensus 27 ~~~~~~~~ppgp~~~p~lG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~ 105 (376)
+..+++++||||+++|++||++.+ ..+++..+.+|+++|||||++++|+.++|+|+||+++++||.+++..|++|+...
T Consensus 4 ~~ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~ 83 (479)
T 3tbg_A 4 KTSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVP 83 (479)
T ss_dssp -----CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCG
T ss_pred CCCCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchH
Confidence 344556899999999999999888 4678889999999999999999999999999999999999998888898887655
Q ss_pred cccccccC--CceeEeccCChhHHHHHHHHHhhcCchhhhh--hhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHH
Q 042142 106 TVDYLTYG--SADFSFAPYGPYWKFMKKLCMTQLLGGQTLN--QFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLT 181 (376)
Q Consensus 106 ~~~~~~~~--~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~ 181 (376)
.......+ ..++++..+|+.|+++|+.+. +.|+...+. .+.+.+......+...+.. ..+.++|+...+..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~ 160 (479)
T 3tbg_A 84 ITQILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFAN--HSGRPFRPNGLLDKAV 160 (479)
T ss_dssp GGGGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHT--TTTCCBCTHHHHHHHH
T ss_pred HHHHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHh--ccCCcccHHHHHHHHH
Confidence 44443322 224456677999999999975 555544443 2445555555555555543 3457899999999999
Q ss_pred HHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccc--cchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 182 NNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNL--QDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQE 259 (376)
Q Consensus 182 ~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (376)
+|+++.++||..++..+...................... ....++... .....++.....+...+.+...+.++.+
T Consensus 161 ~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
T 3tbg_A 161 SNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLH--IPALAGKVLRFQKAFLTQLDELLTEHRM 238 (479)
T ss_dssp HHHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGG--SHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcccccchhhhhhhhhhhhhhhhhhhhhhhhhcccchhcc--chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887665444444333333222111100 011112111 1122233333344444555555544433
Q ss_pred HHHhhhccCCCCCcccHHHHHhccc--ccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHH
Q 042142 260 ARKINKERGKDYAPMDLLDMLLDIS--EDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREE 337 (376)
Q Consensus 260 ~~~~~~~~~~~~~~~dll~~ll~~~--~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~E 337 (376)
..+. . ....|+.+.+.... ........++++++.+++.++++||+||||++++|++++|++||++|+|+|+|
T Consensus 239 ~~~~---~---~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~~E 312 (479)
T 3tbg_A 239 TWDP---A---QPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQE 312 (479)
T ss_dssp HCCT---T---SCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhc---c---cccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCHHHHHHHHHH
Confidence 2211 1 13456666654321 11123346999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCCC
Q 042142 338 IDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPMS 376 (376)
Q Consensus 338 i~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~~ 376 (376)
++++++.++.++.+++.+||||+|||+||||+||++|..
T Consensus 313 i~~~~~~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~ 351 (479)
T 3tbg_A 313 IDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLG 351 (479)
T ss_dssp HHHHTCSSSCCCHHHHTTCHHHHHHHHHHHHHHCSSTTC
T ss_pred HHHHHhhccccchhhhccccccccceeeecccccccccc
Confidence 999999888899999999999999999999999999863
No 4
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.9e-51 Score=386.10 Aligned_cols=335 Identities=25% Similarity=0.414 Sum_probs=253.6
Q ss_pred CCCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccccc
Q 042142 31 TSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYL 110 (376)
Q Consensus 31 ~~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~ 110 (376)
+.+.||||+++|++||++.+.++++..+.+++++||||+++++|+.++++++||+++++|+.++...|.+++........
T Consensus 14 ~lp~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~ 93 (495)
T 2hi4_A 14 GLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLI 93 (495)
T ss_dssp TCBCCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTS
T ss_pred CCCCCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHh
Confidence 33445999999999999888788899999999999999999999999999999999999998776678776644322222
Q ss_pred ccCCceeEec-cCChhHHHHHHHHHhhcC---chhhh---h---hhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHH
Q 042142 111 TYGSADFSFA-PYGPYWKFMKKLCMTQLL---GGQTL---N---QFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRL 180 (376)
Q Consensus 111 ~~~~~~~~~~-~~g~~w~~~R~~~~~~~~---~~~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~ 180 (376)
. ++.++++. .+|+.|+++||++. +.| +.... . .+.+.+.++++++++.+.+...+++++|+.+.+..+
T Consensus 94 ~-~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~ 171 (495)
T 2hi4_A 94 T-DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVS 171 (495)
T ss_dssp T-TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHH
T ss_pred c-CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHH
Confidence 1 22343444 36999999999975 443 32222 2 688999999999999998755556789999999999
Q ss_pred HHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 181 TNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEA 260 (376)
Q Consensus 181 ~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (376)
++|+|+.++||.+++..+.+...+.+................++|++++++ ....+++.+..+.+.+++..+++++++.
T Consensus 172 ~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp-~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 250 (495)
T 2hi4_A 172 VANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLP-NPALQRFKAFNQRFLWFLQKTVQEHYQD 250 (495)
T ss_dssp HHHHHHHHHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887544333333333334333222222334456655432 1223445566667778888888776542
Q ss_pred HHhhhccCCCCCcccHHHHHhcccccC--cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHH
Q 042142 261 RKINKERGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEI 338 (376)
Q Consensus 261 ~~~~~~~~~~~~~~dll~~ll~~~~~~--~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei 338 (376)
.+ .. ...|+++.+++...+. +++..++++++.+++.++++||+||||++++|++++|++||++|+|+|+|+
T Consensus 251 ~~---~~----~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei 323 (495)
T 2hi4_A 251 FD---KN----SVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKEL 323 (495)
T ss_dssp CC---TT----CCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hc---cc----ccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 11 11 2469999998542111 112358999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 339 DSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 339 ~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++++++.++++++++|||++|||+|+||++||+|.
T Consensus 324 ~~v~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~ 360 (495)
T 2hi4_A 324 DTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPF 360 (495)
T ss_dssp HHHTTTSSCCCGGGSTTCHHHHHHHHHHHHHHCSSCB
T ss_pred HHhcCCCCCCChHHhccCHHHHHHHHHHHHccCCccC
Confidence 9999987789999999999999999999999999984
No 5
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=4.3e-50 Score=378.99 Aligned_cols=332 Identities=25% Similarity=0.363 Sum_probs=250.8
Q ss_pred CCCCCCCCCCCCCCcccccccc-CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccc
Q 042142 29 KITSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATV 107 (376)
Q Consensus 29 ~~~~~~ppgp~~~p~lG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~ 107 (376)
.++.++||||+++|++||++.+ ..+++..+.+|+++||++|++++|+.++|+++||+++++|+.++...|.+++.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 4456789999999999999988 577889999999999999999999999999999999999999887788877654433
Q ss_pred cccccCCceeEeccCChhHHHHHHHHHhhcCchhhh--hhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHH
Q 042142 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL--NQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVV 185 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi 185 (376)
.....+ + ++..+|+.|+++||+.. +.++...+ ..+.+.+.+++..+++.+.+. .+.++|+.+.+..+++|+|
T Consensus 86 ~~~~~~--~-l~~~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~dvi 159 (476)
T 3e6i_A 86 HAHRDR--G-IIFNNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNVI 159 (476)
T ss_dssp GGGTTS--S-STTCCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHTHHHHHHH
T ss_pred heecCC--C-EEecCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCcChHHHHHHHHHHHH
Confidence 333222 3 44567999999999864 44443323 346788899999999998753 4678999999999999999
Q ss_pred HHHHhCcccCCCchhHHHHHHHHHHHHhhhcCc--cccchhh-hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 186 SRMTMGQICSNNDKEADEVRKLVQETAELTGKF--NLQDYIW-FCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARK 262 (376)
Q Consensus 186 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (376)
+.++||.+++..+.....+...+.......... .....+| +++++ ++..+...+..+.+.+++...++++++..+
T Consensus 160 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l--p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 237 (476)
T 3e6i_A 160 ADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL--PGSHRKVIKNVAEVKEYVSERVKEHHQSLD 237 (476)
T ss_dssp HHHHHSCCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTS--CSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999998865544344444444433322211 1112233 33332 233345555666677777777766543221
Q ss_pred hhhccCCCCCcccHHHHHhcccccC--cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 263 INKERGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 263 ~~~~~~~~~~~~dll~~ll~~~~~~--~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
.+ .+.|+++.++....++ .....++++++.++++++++||+|||+++++|++++|++||++|+|+|+|+++
T Consensus 238 ---~~----~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei~~ 310 (476)
T 3e6i_A 238 ---PN----CPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDR 310 (476)
T ss_dssp ---TT----SCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ---CC----CCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 2468999888643221 12335899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 341 VVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 341 v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++++.++++++++||||+|||+|+||++|++|.
T Consensus 311 ~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 345 (476)
T 3e6i_A 311 VIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPS 345 (476)
T ss_dssp HTTTTSCCCGGGGGGCHHHHHHHHHHHHHHCSSTT
T ss_pred hcCCCCCCChhhccCCchHHHHHHHHHHhccCCCc
Confidence 99987889999999999999999999999999985
No 6
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=100.00 E-value=7e-50 Score=378.11 Aligned_cols=333 Identities=17% Similarity=0.244 Sum_probs=250.9
Q ss_pred HHhcCCCCCCCCCCCCCCcccccccc-----CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCcccc
Q 042142 25 FRRSKITSSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 25 ~~~~~~~~~~ppgp~~~p~lG~~~~~-----~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
++...++.+.+|||+++|++||++.+ .++++..+.+++++||||+++++|+.+.|+++||+++++|+.++ ..|.
T Consensus 16 ~~~~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~ 94 (482)
T 3k9v_A 16 TDGETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHP 94 (482)
T ss_dssp ---CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSC
T ss_pred cccccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCC
Confidence 33445566778999999999999776 23678899999999999999999999999999999999999874 5676
Q ss_pred CCCCccc---ccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhc-CCCceehHH
Q 042142 100 DRPISAT---VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAK-ASEAVDVGK 175 (376)
Q Consensus 100 ~~~~~~~---~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~vd~~~ 175 (376)
+++.... .........+ ++..+|+.|+++||.+...+++.+.+..+.+.+.++++.+++.+.+... .++++|+.+
T Consensus 95 ~r~~~~~~~~~~~~~~~~~~-l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~ 173 (482)
T 3k9v_A 95 QRLEIKPWKAYRDHRNEAYG-LMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYS 173 (482)
T ss_dssp CCCCCHHHHHHHHHHTCCCC-TTTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHH
T ss_pred CCCCchHHHHHHHhcCCCCC-ceeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 6654321 1111111223 4556799999999998655568888999999999999999999987643 467899999
Q ss_pred HHHHHHHHHHHHHHhCcccCCCc----hhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 042142 176 ELIRLTNNVVSRMTMGQICSNND----KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMME 251 (376)
Q Consensus 176 ~~~~~~~dvi~~~~fg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
.+..+++|+|+.++||.+++..+ ....++.+.+.............. .++.+++. ....+...+..+.+.+++.
T Consensus 174 ~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 251 (482)
T 3k9v_A 174 ELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTP-VELHKRLN-TKVWQAHTLAWDTIFKSVK 251 (482)
T ss_dssp HHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGGGSSSC-HHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhh-HHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886433 223455555555443332211111 11223322 1222334444555666666
Q ss_pred HHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHH
Q 042142 252 RIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMM 331 (376)
Q Consensus 252 ~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~ 331 (376)
.+++++.+..+ .+ ...|+++.++.. ..++++++.+++.++++||+||||++++|++++|++||++|
T Consensus 252 ~~i~~r~~~~~---~~----~~~d~l~~ll~~-------~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q 317 (482)
T 3k9v_A 252 PCIDNRLQRYS---QQ----PGADFLCDIYQQ-------DHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQ 317 (482)
T ss_dssp HHHHHHHHHTT---TC----TTSCHHHHHHHH-------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhc---cC----CchHHHHHHHhc-------cCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCHHHH
Confidence 77776654321 11 235788877753 13889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 332 KKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 332 ~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+|+|+||++++++++.++++|+++||||+|||+|+||++|++|.
T Consensus 318 ~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~ 361 (482)
T 3k9v_A 318 RRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPF 361 (482)
T ss_dssp HHHHHHHHHHSCTTCCCCGGGGGGCHHHHHHHHHHHHHSCSCCE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHhhCHHHHHHHHHHhhcCCCCcC
Confidence 99999999999987889999999999999999999999999984
No 7
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=3.3e-50 Score=379.97 Aligned_cols=334 Identities=22% Similarity=0.341 Sum_probs=251.4
Q ss_pred CCCCCCCCCCCCCccccccccCCC---chHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccc
Q 042142 30 ITSSLPPSPMALPIIGHLHLLAPI---PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAT 106 (376)
Q Consensus 30 ~~~~~ppgp~~~p~lG~~~~~~~~---~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~ 106 (376)
++.++||||+++|++||++.+... ++..+.+++++||||+++++|+.++++++||+++++|+.+++..|++++....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 445789999999999999877433 78899999999999999999999999999999999999987777877654332
Q ss_pred ccccccCCceeEeccCChhHHHHHHHHHhhcCchhhh--hhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHH
Q 042142 107 VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL--NQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNV 184 (376)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dv 184 (376)
......+ .++++..+|+.|+++||++. +.|+...+ ..+.+.+.++++++++.+... .++++|+.+.+..+++|+
T Consensus 89 ~~~~~~~-~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~v 164 (481)
T 3czh_A 89 FMKMTKM-GGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETY--KGRPFDFKQLITNAVSNI 164 (481)
T ss_dssp HHHHHTT-CSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TTCCBCCHHHHHHHHHHH
T ss_pred HHhhcCC-CCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHH
Confidence 2222222 23344567999999999974 66665443 578899999999999999753 356799999999999999
Q ss_pred HHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCcc--ccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 185 VSRMTMGQICSNNDKEADEVRKLVQETAELTGKFN--LQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARK 262 (376)
Q Consensus 185 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (376)
|+.++||.+++..+.....+.+.+........... ....+|++++++ ....+++.+..+.+.+++..+++++++..+
T Consensus 165 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 243 (481)
T 3czh_A 165 TNLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILP-FGKHQQLFRNAAVVYDFLSRLIEKASVNRK 243 (481)
T ss_dssp HHHHHHSSCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCS-SSHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999887544333344444444433222111 223345554332 122344556666777777777776543210
Q ss_pred hhhccCCCCCcccHHHHHhcccccC--cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 263 INKERGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 263 ~~~~~~~~~~~~dll~~ll~~~~~~--~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
. ....|+++.+++...+. +.+..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+++
T Consensus 244 ----~---~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~ 316 (481)
T 3czh_A 244 ----P---QLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDL 316 (481)
T ss_dssp ----T---TCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ----C---CchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 1 12469999998653211 11235899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 341 VVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 341 v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++|+++.++++++++|||++|||+|+||++||+|.
T Consensus 317 ~~~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 351 (481)
T 3czh_A 317 IMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPL 351 (481)
T ss_dssp HTCSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTT
T ss_pred hcCCCCCCChhhhhhChHHHHHHHHHHhhcccccc
Confidence 99977789999999999999999999999999984
No 8
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=100.00 E-value=5.4e-51 Score=386.05 Aligned_cols=327 Identities=19% Similarity=0.286 Sum_probs=240.9
Q ss_pred CCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhC-CccccCCCCcccccccc
Q 042142 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTH-ETSFCDRPISATVDYLT 111 (376)
Q Consensus 33 ~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~-~~~f~~~~~~~~~~~~~ 111 (376)
+.||||+++|++||++.+..+++..+.+|+++|||++++++|+.++|+++||+++++|+.++ ...|.+++.........
T Consensus 14 ~~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~~ 93 (485)
T 3nxu_A 14 LGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMK 93 (485)
T ss_dssp HTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGGG
T ss_pred CCCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccccccccc
Confidence 45899999999999999888888999999999999999999999999999999999999887 56676665433222221
Q ss_pred cCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhC
Q 042142 112 YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMG 191 (376)
Q Consensus 112 ~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg 191 (376)
+.++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.+....+.++|+.+.+..+++|+|+.++||
T Consensus 94 ----~~l~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~fG 168 (485)
T 3nxu_A 94 ----SAISIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 168 (485)
T ss_dssp ----GSTTTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred ----cCccccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHcC
Confidence 124456799999999997 588999999999999999999999999876556789999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhcC---ccccchhhhhhh----hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042142 192 QICSNNDKEADEVRKLVQETAELTGK---FNLQDYIWFCKN----IDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKIN 264 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (376)
.+++..+.....+...+......... ......+|++.+ +...... .+..+.+..+++..++++. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~- 240 (485)
T 3nxu_A 169 VNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFP---REVTNFLRKSVKRMKESRL----E- 240 (485)
T ss_dssp CCCCGGGCTTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSC---HHHHHHHHHHHHHHHHHHH----H-
T ss_pred CccccccCCCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhch---HHHHHHHHHHHHHHHHHHH----h-
Confidence 98875432222232222221110000 000111222211 1111111 1222333334433333321 1
Q ss_pred hccCCCCCcccHHHHHhcccccC--cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhh
Q 042142 265 KERGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVV 342 (376)
Q Consensus 265 ~~~~~~~~~~dll~~ll~~~~~~--~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~ 342 (376)
.. .....|+++.+++...+. .....++++++.++++++++||+||||++++|++++|++||++|+|+|+|+++++
T Consensus 241 -~~--~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 317 (485)
T 3nxu_A 241 -DT--QKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVL 317 (485)
T ss_dssp -CC-----CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -cc--CCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 11 113469999998653221 1234589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 343 GKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 343 ~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++.++++++.+||||+|||+|+||++|++|.
T Consensus 318 ~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 350 (485)
T 3nxu_A 318 PNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMR 350 (485)
T ss_dssp TTTCCCCHHHHHHCHHHHHHHHHHHHHSCSCSC
T ss_pred ccCCCCCHHHHhcChHHHHHHHHHHhcCCCccC
Confidence 987889999999999999999999999999875
No 9
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=3.5e-50 Score=381.56 Aligned_cols=328 Identities=27% Similarity=0.368 Sum_probs=242.0
Q ss_pred hcCCCCCCCCCCCCCCcccccccc-CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc
Q 042142 27 RSKITSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA 105 (376)
Q Consensus 27 ~~~~~~~~ppgp~~~p~lG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~ 105 (376)
+..++.++||||++ ++.+ .++++..+.+++++|||++++++|+.++|+++||+++++|+.++...|.+++...
T Consensus 23 ~~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~ 96 (496)
T 3qz1_A 23 WKLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIP 96 (496)
T ss_dssp ------CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCT
T ss_pred hhccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcc
Confidence 34556789999987 3344 5788999999999999999999999999999999999999998888888777554
Q ss_pred cccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHH
Q 042142 106 TVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVV 185 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi 185 (376)
.......+..++.+..+|+.|+++||++. +.|+.+.++.+.+.+.++++++++.+.+ ..++++|+.+.+..+++|+|
T Consensus 97 ~~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~dvi 173 (496)
T 3qz1_A 97 SYKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRV--QAGAPVTIQKEFSLLTCSII 173 (496)
T ss_dssp TTTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHT--TCSCCCHHHHHHTHHHHHHT
T ss_pred hHHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHh--cCCCccCHHHHHHHHHHHHH
Confidence 33333223224444433999999999974 6677667788999999999999999976 34678999999999999999
Q ss_pred HHHHhCcccCCCchhHHHHHHHHHHHHhhhcC--ccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042142 186 SRMTMGQICSNNDKEADEVRKLVQETAELTGK--FNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKI 263 (376)
Q Consensus 186 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (376)
+.++||. ..+.....+.+.+......... ......+|++++++. ...+++.+..+.+.+++...++++++..+
T Consensus 174 ~~~~fG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 248 (496)
T 3qz1_A 174 CYLTFGN---KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPN-PGLWRLKQAIENRDHMVEKQLRRHKESMV- 248 (496)
T ss_dssp TTTSTTC---CCHHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHhcCC---CCChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 9999998 2222223333333332222111 112234455554422 23345566667777777777776544321
Q ss_pred hhccCCCCCcccHHHHHhcccccC--ccc-ccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 264 NKERGKDYAPMDLLDMLLDISEDE--SSE-IKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 264 ~~~~~~~~~~~dll~~ll~~~~~~--~~~-~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
.+ ...|+++.+++...+. .++ ..++++++..++.++++||+||||++++|++++|++||++|+|+|+|+++
T Consensus 249 --~~----~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~ 322 (496)
T 3qz1_A 249 --AG----QWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDR 322 (496)
T ss_dssp --SS----CCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --CC----CccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 11 3468999999764321 111 26899999999999999999999999999999999999999999999999
Q ss_pred hhCC----CCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 341 VVGK----SRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 341 v~~~----~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++ ++.+ ++++++||||+|||+|+||++|++|.
T Consensus 323 ~~~~~~~~~~~~-~~~~~~lpyl~a~i~E~lRl~p~~~~ 360 (496)
T 3qz1_A 323 ELGPGASCSRVT-YKDRARLPLLNATIAEVLRLRPVVPL 360 (496)
T ss_dssp HHCSSSSSSCCS-TTGGGSCHHHHHHHHHHHHHSCSSSS
T ss_pred HhCCCcccCCCC-hhhhhcCcHHHHHHHHHHHhcCCccc
Confidence 9986 4556 89999999999999999999999985
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=100.00 E-value=1.6e-49 Score=374.96 Aligned_cols=330 Identities=21% Similarity=0.380 Sum_probs=247.7
Q ss_pred CCCCCCCCCCCcccccccc-CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccccc
Q 042142 32 SSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYL 110 (376)
Q Consensus 32 ~~~ppgp~~~p~lG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~ 110 (376)
.+.||||+++|++||++.+ .++++..+.+++++|||++++++|+.+.|+++||+++++|+.++...|.+++........
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 88 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhh
Confidence 4689999999999999888 678899999999999999999999999999999999999998766677765543222222
Q ss_pred ccCCceeEeccCChhHHHHHHHHHhhcCchh--hhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHH
Q 042142 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQ--TLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (376)
Q Consensus 111 ~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~ 188 (376)
..+ .+ ++..+|+.|+++||++ .+.|+.. .++.+.+.+.++++++++.+.+. .++++|+.+.+..+++|+|+.+
T Consensus 89 ~~~-~~-l~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~vi~~~ 163 (476)
T 1po5_A 89 FQG-YG-VIFANGERWRALRRFS-LATMRDFGMGKRSVEERIQEEARCLVEELRKS--KGALLDNTLLFHSITSNIICSI 163 (476)
T ss_dssp CSS-CC-CCCSSHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHHHH
T ss_pred cCC-Cc-eEecCCcHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHHHH
Confidence 122 23 3445799999999986 4666655 35678999999999999999763 3568999999999999999999
Q ss_pred HhCcccCCCchhHHHHHHHHHHHHhhhcCc--cccchhhh-hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042142 189 TMGQICSNNDKEADEVRKLVQETAELTGKF--NLQDYIWF-CKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINK 265 (376)
Q Consensus 189 ~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (376)
+||.+++..+.....+.+.+.......... .....+|+ ++++ +...++..+..+.+.+++...++++++..+
T Consensus 164 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l--p~~~~~~~~~~~~~~~~~~~~i~~r~~~~~--- 238 (476)
T 1po5_A 164 VFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHF--PGTHRQIYRNLQEINTFIGQSVEKHRATLD--- 238 (476)
T ss_dssp HHSSCCCTTCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTS--SCSHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 999988754432233333333322111101 11123343 2332 222344555666777777777776543210
Q ss_pred ccCCCCCcccHHHHHhccccc--CcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhC
Q 042142 266 ERGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVG 343 (376)
Q Consensus 266 ~~~~~~~~~dll~~ll~~~~~--~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~ 343 (376)
.. .+.|+++.++....+ .+.+..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+||+++++
T Consensus 239 ~~----~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~ 314 (476)
T 1po5_A 239 PS----NPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIG 314 (476)
T ss_dssp TT----SCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred CC----CcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 11 246999998854221 111234889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 344 KSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 344 ~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
.++.++++++++||||+|||+|+||++|++|+
T Consensus 315 ~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~ 346 (476)
T 1po5_A 315 SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPF 346 (476)
T ss_dssp SSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTT
T ss_pred CCCCCChHHHhcCcHHHHHHHHHHHhccCCCC
Confidence 77779999999999999999999999999984
No 11
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=9.8e-50 Score=379.11 Aligned_cols=326 Identities=19% Similarity=0.253 Sum_probs=245.9
Q ss_pred CCCCCCCCCCCCCccccccccCC----CchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc
Q 042142 30 ITSSLPPSPMALPIIGHLHLLAP----IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA 105 (376)
Q Consensus 30 ~~~~~ppgp~~~p~lG~~~~~~~----~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~ 105 (376)
.+.+.||||+++|++||++.+.. ..+..+.+++++|||++++++|+.++|+++||+++++++++ ..|.+++...
T Consensus 42 ~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~ 119 (503)
T 3s79_A 42 EGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSK 119 (503)
T ss_dssp ---CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCH
T ss_pred hccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhh
Confidence 35578999999999999987642 34467889999999999999999999999999999999964 3566664432
Q ss_pred cc-cccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHH
Q 042142 106 TV-DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNV 184 (376)
Q Consensus 106 ~~-~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dv 184 (376)
.. .....++.+.++..+|+.|+++||.+. +.|+...++++.+.+.+++.++++.+.+....++++|+.+.+..+++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 120 LGLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHH
T ss_pred hhhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHH
Confidence 21 222222234456677999999999974 7888889999999999999999988876545567899999999999999
Q ss_pred HHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042142 185 VSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKIN 264 (376)
Q Consensus 185 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (376)
|+.++||.+++.. .....+...+....... .....+.. ++...+++.+..+.+.+++..+++++++..+.
T Consensus 199 i~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 268 (503)
T 3s79_A 199 SNTLFLRIPLDES-AIVVKIQGYFDAWQALL---IKPDIFFK-----ISWLYKKYEKSVKDLKDAIEVLIAEKRRRIST- 268 (503)
T ss_dssp HHHHHTCCCCCHH-HHHHHHHHHHHHHHHHT---TCCHHHHH-----SGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHcCcccCch-hHHHHHHHHHHHHHHHh---cCcHHHhh-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9999999877521 11122222222211111 01111111 12223455666777888888888877665432
Q ss_pred hccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCC
Q 042142 265 KERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGK 344 (376)
Q Consensus 265 ~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~ 344 (376)
+.......|+++.+++..++ ..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|+++++|
T Consensus 269 --~~~~~~~~d~l~~ll~~~~~----~~l~~~~i~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~kl~~Ei~~v~~- 341 (503)
T 3s79_A 269 --EEKLEECMDFATELILAEKR----GDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIG- 341 (503)
T ss_dssp --CTTTTTTCCHHHHHHHHHHT----TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-
T ss_pred --ccccchHHHHHHHHHHhccc----CCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC-
Confidence 11111235999999875322 25899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 345 SRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 345 ~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++.++++|+++|||++|||+|+||++|++|.
T Consensus 342 ~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~ 372 (503)
T 3s79_A 342 ERDIKIDDIQKLKVMENFIYESMRYQPVVDL 372 (503)
T ss_dssp TSCCCHHHHTTCHHHHHHHHHHHHHSCSSCC
T ss_pred CCCCCHHHHhcCHHHHHHHHhhhccCCCccc
Confidence 5679999999999999999999999999985
No 12
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=2.2e-49 Score=374.00 Aligned_cols=331 Identities=24% Similarity=0.390 Sum_probs=251.8
Q ss_pred CCCCCCCCCCCCcccccccc-CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccc
Q 042142 31 TSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDY 109 (376)
Q Consensus 31 ~~~~ppgp~~~p~lG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~ 109 (376)
+.+.||||+++|++||++.+ .++++..+.+++++|||++++++|+.++++++||+++++|+.++...|.+++.......
T Consensus 8 ~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~ 87 (476)
T 2fdv_A 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDW 87 (476)
T ss_dssp CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHH
T ss_pred cCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhh
Confidence 34689999999999999888 57788999999999999999999999999999999999999876667776554322222
Q ss_pred cccCCceeEeccCChhHHHHHHHHHhhcCchhhh--hhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHH
Q 042142 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL--NQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (376)
Q Consensus 110 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~ 187 (376)
...+ .+ ++..+|+.|+++||++ .+.|+...+ +.+.+.+.++++++++.+.+. .++++|+.+.+..+++|+|+.
T Consensus 88 ~~~~-~~-l~~~~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi~~ 162 (476)
T 2fdv_A 88 VFKG-YG-VVFSNGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRGT--GGANIDPTFFLSRTVSNVISS 162 (476)
T ss_dssp HHTT-CS-SSSCCHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHHH
T ss_pred hcCC-CC-eEecCchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHHHH
Confidence 2122 23 3345799999999987 467776666 678999999999999999763 356899999999999999999
Q ss_pred HHhCcccCCCchhHHHHHHHHHHHHhhhcCc--cccchhhh-hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042142 188 MTMGQICSNNDKEADEVRKLVQETAELTGKF--NLQDYIWF-CKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKIN 264 (376)
Q Consensus 188 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (376)
++||.+++..+.....+.+.+.......... .+...+|+ ++++ +...++..+..+.+.+++..+++++++..+
T Consensus 163 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-- 238 (476)
T 2fdv_A 163 IVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHL--PGPQQQAFQLLQGLEDFIAKKVEHNQRTLD-- 238 (476)
T ss_dssp HHHSSCCCTTCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHcCCcCCCCCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 9999988754433344444444433222111 01223444 3332 233344555666777777777776543210
Q ss_pred hccCCCCCcccHHHHHhcccccC--cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhh
Q 042142 265 KERGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVV 342 (376)
Q Consensus 265 ~~~~~~~~~~dll~~ll~~~~~~--~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~ 342 (376)
. ..+.|+++.++....+. .++..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+||++++
T Consensus 239 --~---~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~ 313 (476)
T 2fdv_A 239 --P---NSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVI 313 (476)
T ss_dssp --T---TSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred --C---CCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhh
Confidence 1 12469999998653211 1123589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 343 GKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 343 ~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++.++++++++||||+|||+|+||++|++|.
T Consensus 314 ~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 346 (476)
T 2fdv_A 314 GKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPM 346 (476)
T ss_dssp CSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTT
T ss_pred cCCCCCChhhhhcChHHHHHHHHHHHhcCCccc
Confidence 977779999999999999999999999999983
No 13
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=100.00 E-value=2.7e-49 Score=373.59 Aligned_cols=331 Identities=24% Similarity=0.352 Sum_probs=241.8
Q ss_pred CCCCCCCCCCCCcccccccc-CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccc
Q 042142 31 TSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDY 109 (376)
Q Consensus 31 ~~~~ppgp~~~p~lG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~ 109 (376)
+.+.||||+++|++||++.+ .++++..+.+++++|||++++++|+.+.|+++||+++++|+.++...|.+++.......
T Consensus 9 ~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~ 88 (477)
T 1r9o_A 9 RGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER 88 (477)
T ss_dssp CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCT
T ss_pred CCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhh
Confidence 34689999999999999887 45678899999999999999999999999999999999999876667776554322222
Q ss_pred cccCCceeEeccCChhHHHHHHHHHhhcCchh--hhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHH
Q 042142 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQ--TLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (376)
Q Consensus 110 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~ 187 (376)
...+ .+ ++..+|+.|+++||++. +.|+.. .++.+.+.+.++++.+++.+.+. .++++|+.+.+..+++|+|+.
T Consensus 89 ~~~~-~~-l~~~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi~~ 163 (477)
T 1r9o_A 89 ANRG-FG-IVFSNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKT--KASPCDPTFILGCAPCNVICS 163 (477)
T ss_dssp TTCT-TS-STTCCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHHHHHHHHHHH
T ss_pred ccCC-Cc-eEecCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHHHH
Confidence 2122 23 34457999999999864 566655 45678999999999999999753 356899999999999999999
Q ss_pred HHhCcccCCCchhHHHHHHHHHHHHhhhcCc--cccchhhh-hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042142 188 MTMGQICSNNDKEADEVRKLVQETAELTGKF--NLQDYIWF-CKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKIN 264 (376)
Q Consensus 188 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (376)
++||.+++..+.....+...+.......... .....+|+ ++++ +...++..+..+.+.+++..+++++++..+
T Consensus 164 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l--p~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-- 239 (477)
T 1r9o_A 164 IIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYF--PGTHNKLLKNVAFMKSYILEKVKEHQESMD-- 239 (477)
T ss_dssp HHHSCCCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHccCcCCCCCHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 9999988754433333333333333221111 12223443 2222 222244555666777788777776643211
Q ss_pred hccCCCCCcccHHHHHhccccc--CcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhh
Q 042142 265 KERGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVV 342 (376)
Q Consensus 265 ~~~~~~~~~~dll~~ll~~~~~--~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~ 342 (376)
.. .+.|+++.++....+ ..++..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+||++++
T Consensus 240 -~~----~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 314 (477)
T 1r9o_A 240 -MN----NPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVI 314 (477)
T ss_dssp -TT----CCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred -CC----CchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 11 246999998853221 11123589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 343 GKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 343 ~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++.++++++++||||+|||+|+||++|++|.
T Consensus 315 ~~~~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 347 (477)
T 1r9o_A 315 GRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPT 347 (477)
T ss_dssp CSSSCCCGGGGGGCHHHHHHHHHHHHHHTSSTT
T ss_pred CCCCCCChHhhccCcHHHHHHHHHHHhcCCCCC
Confidence 977779999999999999999999999999984
No 14
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=100.00 E-value=7.6e-47 Score=357.82 Aligned_cols=333 Identities=18% Similarity=0.207 Sum_probs=243.4
Q ss_pred cCCCCCCCCCCCCCCcccccccc-----CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCC
Q 042142 28 SKITSSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP 102 (376)
Q Consensus 28 ~~~~~~~ppgp~~~p~lG~~~~~-----~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~ 102 (376)
..++.+.+|||+.+|+. |++.+ .++++..+.+++++||||+++++|+.+.|+++||+++++|+.+++ .|.+++
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCC
Confidence 34555678999988875 66554 136778899999999999999999999999999999999998754 676665
Q ss_pred Ccccc-cc-cccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhh----cCCCceehHHH
Q 042142 103 ISATV-DY-LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKA----KASEAVDVGKE 176 (376)
Q Consensus 103 ~~~~~-~~-~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~----~~~~~vd~~~~ 176 (376)
..... .. ...+....++..+|+.|+++||.+...+|+.+.++.+.+.+.++++++++.+.+.. .++.++|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~ 161 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDD 161 (487)
T ss_dssp CCHHHHHHHHHTTCCCCGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHH
T ss_pred CCcHHHHHHHHccccCCCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHH
Confidence 43211 10 11111123566789999999999864479999999999999999999999998743 23457999999
Q ss_pred HHHHHHHHHHHHHhCcccCCCch----hHHHHHHHHHHHHhhhcCccccchhh-h-hhhhcccchhHHHHHHHHHHHHHH
Q 042142 177 LIRLTNNVVSRMTMGQICSNNDK----EADEVRKLVQETAELTGKFNLQDYIW-F-CKNIDLQGFGKRLKEVRRKFDNMM 250 (376)
Q Consensus 177 ~~~~~~dvi~~~~fg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
+..+++|+|+.++||.+++..+. ....+...+.......... ..+| + ++++. ....+...+..+.+.+++
T Consensus 162 ~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~l~~~~~-~~~~~~~~~~~~~~~~~~ 237 (487)
T 3n9y_A 162 LFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPM---LNLPPDLFRLFR-TKTWKDHVAAWDVIFSKA 237 (487)
T ss_dssp HHHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHGGG---TTSCHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHHHH---HhcCHHHHhhcc-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874321 2233444444433322211 1112 1 22221 111223333344455566
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHH
Q 042142 251 ERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDM 330 (376)
Q Consensus 251 ~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v 330 (376)
...++++.+..+.. ........|+++.+++. ..++++++.+++.++++||+||||++++|++++|++||++
T Consensus 238 ~~~i~~~~~~~~~~--~~~~~~~~d~l~~ll~~-------~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~ 308 (487)
T 3n9y_A 238 DIYTQNFYWELRQK--GSVHHDYRGILYRLLGD-------SKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKV 308 (487)
T ss_dssp HHHHHHHHHHHHHH--CCCCSSCCCHHHHHHHS-------CSSCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhc--CCcccchHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhChHH
Confidence 66666554433221 11111346899998853 1388999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 331 MKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 331 ~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
|+|+++|+++++++++.++++++++||||+|||+|+||++|++|.
T Consensus 309 ~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~avi~E~lRl~p~~~~ 353 (487)
T 3n9y_A 309 QDMLRAEVLAARHQAQGDMATMLQLVPLLKASIKETLRLHPISVT 353 (487)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHTTSCHHHHHHHHHHHHHSCSSSE
T ss_pred HHHHHHHHHHhhcccccchhhhhhhCHHHHHHHHHHhhhCCcccc
Confidence 999999999999876667799999999999999999999999874
No 15
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=100.00 E-value=5.2e-47 Score=357.03 Aligned_cols=324 Identities=18% Similarity=0.245 Sum_probs=239.3
Q ss_pred CCCCCCCCCCccccccccC-CCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccc
Q 042142 33 SLPPSPMALPIIGHLHLLA-PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLT 111 (376)
Q Consensus 33 ~~ppgp~~~p~lG~~~~~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~ 111 (376)
+.||||+++|++||++.+. ++++..+.+++++||||+++++|+.+.++++||+++++|+.++ .|.+... .......
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~~~~~-~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFDKNLS-QALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEEECCC-HHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcCcCch-hHHHHHH
Confidence 3579999999999998884 5788889999999999999999999999999999999999642 3532121 1111110
Q ss_pred -cCCceeEec-cCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHH
Q 042142 112 -YGSADFSFA-PYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMT 189 (376)
Q Consensus 112 -~~~~~~~~~-~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~ 189 (376)
..+.++.+. .+|+.|+++||.+ .+.|+.+.++.+.+.+.+++.++++.+... ..++++|+.+.+..+++|+|+.++
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~vd~~~~~~~~~~~vi~~~~ 157 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERL-NADEHIEVPEDMTRLTLDTIGLCG 157 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTC-CTTCCEEHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEHHHHHHHHHHHHHHHHH
Confidence 011233333 3799999999997 578999999999999999999999998753 235689999999999999999999
Q ss_pred hCcccCCCc-hhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 042142 190 MGQICSNND-KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERG 268 (376)
Q Consensus 190 fg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (376)
||.+++... .+...+...+............ ..+++..+ .....+.+.+..+.+.+++..+++++++. ..
T Consensus 158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~- 228 (470)
T 2ij2_A 158 FNYRFNSFYRDQPHPFITSMVRALDEAMNKLQ--RANPDDPA-YDENKRQFQEDIKVMNDLVDKIIADRKAS-----GE- 228 (470)
T ss_dssp HSCCCCGGGCSSCCHHHHHHHHHHHHHHHTC-----CTTSGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC-
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHHHHHHh--hhhhHhhc-cchHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc-
Confidence 999876421 1112233333332221111100 01222222 11223444555666777777777765432 11
Q ss_pred CCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCC
Q 042142 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLV 348 (376)
Q Consensus 269 ~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~ 348 (376)
...|+++.|++...++ ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+++++|+ +.+
T Consensus 229 ---~~~dll~~ll~~~~~~-~~~~ls~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~-~~~ 303 (470)
T 2ij2_A 229 ---QSDDLLTHMLNGKDPE-TGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVD-PVP 303 (470)
T ss_dssp ---CCSSHHHHHHHCCCTT-TCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCS-SSC
T ss_pred ---CchhHHHHHHhccCcc-cCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCC-CCC
Confidence 2469999999753221 23358999999999999999999999999999999999999999999999999986 458
Q ss_pred CcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 349 EESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 349 ~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+++++++||||+|||+|+||++|++|.
T Consensus 304 ~~~~~~~lpyl~a~i~E~lRl~p~~~~ 330 (470)
T 2ij2_A 304 SYKQVKQLKYVGMVLNEALRLWPTAPA 330 (470)
T ss_dssp CHHHHHTCHHHHHHHHHHHHHSCSSCE
T ss_pred CHHHHhCCHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999984
No 16
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=100.00 E-value=1.8e-47 Score=358.46 Aligned_cols=324 Identities=17% Similarity=0.288 Sum_probs=250.2
Q ss_pred CCCCCCCCC-CCccccccccCCCchHHHHHHHHhcC-CeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccc
Q 042142 32 SSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDY 109 (376)
Q Consensus 32 ~~~ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~yG-~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~ 109 (376)
+++||||++ +|++||++.+..+++..+.+++++|| ++|++++|+.++|+++||+++++++.++...|++++.......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 467898664 99999998887788999999999999 9999999999999999999999999987777876654332222
Q ss_pred cccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHH-HHHHhhcCCCceehHHHHHHHHHHHHHHH
Q 042142 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQ-LMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (376)
Q Consensus 110 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~vd~~~~~~~~~~dvi~~~ 188 (376)
. .| .+..+..+|+.|+++|+.+ .+.|+.+.++.+.+.+.+++.++++ .+.+ .++++|+.+.+..+++|+++.+
T Consensus 82 ~-~g-~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~i~~~ 155 (450)
T 3gw9_A 82 V-FG-EGVAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINTACQC 155 (450)
T ss_dssp H-HC-TTSGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHHHHHH
T ss_pred H-hc-CCcccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHHHHHH
Confidence 2 12 1334455799999999996 5889999999999999999999888 5432 3457999999999999999999
Q ss_pred HhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 042142 189 TMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERG 268 (376)
Q Consensus 189 ~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (376)
+||.+++.... ...+...+....... .....++|++++++. ...++..+..+.+.+++..+++++++.... .
T Consensus 156 ~fG~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~- 227 (450)
T 3gw9_A 156 LFGEDLRKRLD-ARRFAQLLAKMESSL--IPAAVFLPILLKLPL-PQSARCHEARTELQKILSEIIIARKEEEVN---K- 227 (450)
T ss_dssp HSCHHHHHHSC-HHHHHHHHHHHHHTC--CGGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T-
T ss_pred HcCcchhhhhh-hHHHHHHHHHHHhcc--ccchhcccchhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-
Confidence 99987653211 233444444332221 122334566555432 233455666777888888888776643221 1
Q ss_pred CCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHh--hChHHHHHHHHHHhhhhCCCC
Q 042142 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELI--NHPDMMKKAREEIDSVVGKSR 346 (376)
Q Consensus 269 ~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~--~~P~v~~~l~~Ei~~v~~~~~ 346 (376)
+....|+++.+++...++ +..++++++.++++++++||+|||+++++|++++|+ .||++|+|+|+|++++ .+
T Consensus 228 -~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~~~p~~~~~l~~Ei~~~---~~ 301 (450)
T 3gw9_A 228 -DSSTSDLLSGLLSAVYRD--GTPMSLHEVCGMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF---PA 301 (450)
T ss_dssp -SCCCCSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHTTC---CS
T ss_pred -CCccchHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHcCCcchhHHHHHHHHHHhc---cC
Confidence 113569999999764322 335899999999999999999999999999999999 9999999999999998 34
Q ss_pred CCCcccC-CCChhHHHHHHHHhccCCCCCC
Q 042142 347 LVEESDI-INLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 347 ~~~~~~l-~~lpyl~avikEtlRl~p~~p~ 375 (376)
.++++++ .+||||+|||+|+||++|++|.
T Consensus 302 ~~~~~~~~~~lpyl~a~i~E~lRl~p~~~~ 331 (450)
T 3gw9_A 302 QLNYNNVMDEMPFAERCARESIRRDPPLLM 331 (450)
T ss_dssp SCCHHHHHHHCHHHHHHHHHHHHHSCSCCC
T ss_pred CCChHHHHHhcHHHHHHHHHHHHhCCchhc
Confidence 5788899 9999999999999999999985
No 17
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=100.00 E-value=1.3e-47 Score=360.38 Aligned_cols=320 Identities=18% Similarity=0.258 Sum_probs=240.5
Q ss_pred CCCCCCCCC-CCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccccc
Q 042142 32 SSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYL 110 (376)
Q Consensus 32 ~~~ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~ 110 (376)
.+.||+|++ +|++||++.+..+++.++.+++++|||||++++|+.++|+++||+++++++.++...|..++........
T Consensus 10 ~~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 10 VKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 456788774 9999999998889999999999999999999999999999999999999999877777665432221111
Q ss_pred ccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHh
Q 042142 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTM 190 (376)
Q Consensus 111 ~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~f 190 (376)
..| .+.++..+|+.|+++|+.+ .+.|+.+.++.+.+.+.+++.++++.+. ++..+|+.+.+..+++|+++.++|
T Consensus 90 ~~g-~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~f 163 (461)
T 3ld6_A 90 VFG-KGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWG----ESGEKNVFEALSELIILTASHCLH 163 (461)
T ss_dssp HHC-TTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGC----SEEEEEHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHh----hcCCccHHHHHHHHHHHHHHHHHc
Confidence 122 2345667799999999996 5789999999999999999988877764 345689999999999999999999
Q ss_pred CcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 042142 191 GQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKD 270 (376)
Q Consensus 191 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 270 (376)
|.+++.... +.+............ .....++. +++.+. .++..++.+.+.+++...+++++. +.
T Consensus 164 G~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~i~~r~~------~~--- 227 (461)
T 3ld6_A 164 GKEIRSQLN--EKVAQLYADLDGGFS--HAAWLLPG--WLPLPS-FRRRDRAHREIKDIFYKAIQKRRQ------SQ--- 227 (461)
T ss_dssp CHHHHHTCC--HHHHHHHHHHHTTSS--HHHHHSCT--TSCCHH-HHHHHHHHHHHHHHHHHHHHHHTT------CC---
T ss_pred Ccchhhhhh--hhhhhhhhhhhhhhh--hHHHhhhh--hccCcH-HHHHHHHHHHHHHHHHHHHHHHHh------cC---
Confidence 987653321 222222222221111 01111111 111222 233445555666666666654321 11
Q ss_pred CCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCC-CCCC
Q 042142 271 YAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKS-RLVE 349 (376)
Q Consensus 271 ~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~-~~~~ 349 (376)
....|+++.+++...++ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+++++|+. ..++
T Consensus 228 ~~~~d~l~~ll~~~~~~--~~~ls~~ei~~~~~~~~~aG~dTt~~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~ 305 (461)
T 3ld6_A 228 EKIDDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLT 305 (461)
T ss_dssp CCCCSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCcchhhhhHHhhhcc--cCCCCHHHHHHHHHhhhhcccccccccchhhhcccccChHHHHHHHHHHHHHhcccccchh
Confidence 13469999999764332 34699999999999999999999999999999999999999999999999999865 3467
Q ss_pred cccCCCChhHHHHHHHHhccCCCCCC
Q 042142 350 ESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 350 ~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
.+++++||||+|||+||||++|++|.
T Consensus 306 ~~~l~~lpyl~avi~E~lRl~p~~~~ 331 (461)
T 3ld6_A 306 YDQLKDLNLLDRCIKETLRLRPPIMI 331 (461)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHhhhhheeeeccccCCchhc
Confidence 88899999999999999999999985
No 18
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=100.00 E-value=3.4e-46 Score=349.07 Aligned_cols=314 Identities=19% Similarity=0.209 Sum_probs=234.9
Q ss_pred cCCCCCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccc
Q 042142 28 SKITSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATV 107 (376)
Q Consensus 28 ~~~~~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~ 107 (376)
..++.+.||||+++|++||++.+..+++ .+.+++++|||++++++++.+.++++||+++++|+.++...|..+... ..
T Consensus 7 ~~~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~ 84 (444)
T 2ve3_A 7 NLNSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-ST 84 (444)
T ss_dssp --CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HH
T ss_pred CCCCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HH
Confidence 3455678999999999999987755666 788999999999999988888999999999999998765556532211 11
Q ss_pred cccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHH
Q 042142 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (376)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~ 187 (376)
... .|..+ ++..+|+.|+++|+.+ .+.|+.+.++.+.+.+.++++++++.+.. ++++|+.+.+..+++|+|+.
T Consensus 85 ~~~-~g~~~-l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi~~ 157 (444)
T 2ve3_A 85 RIL-LGPNA-LATQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVAAT 157 (444)
T ss_dssp HHH-HCTTS-GGGCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHHHH
T ss_pred HHH-hCccc-cccCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHHHH
Confidence 111 12213 3446799999999997 57899999999999999999999999853 46899999999999999999
Q ss_pred HHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042142 188 MTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKER 267 (376)
Q Consensus 188 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (376)
++||. ....+ .++...+......... +...+|. .. .++..+..+.+.+++..+++++++. .
T Consensus 158 ~~fG~-~~~~~---~~~~~~~~~~~~~~~~--~~~~~p~------~~-~~~~~~~~~~~~~~~~~~i~~r~~~------~ 218 (444)
T 2ve3_A 158 LFMGE-KVSQN---PQLFPWFETYIQGLFS--LPIPLPN------TL-FGKSQRARALLLAELEKIIKARQQQ------P 218 (444)
T ss_dssp HHTCH-HHHSC---TTHHHHHHHHHHHHSS--CCCCSTT------SH-HHHHHHHHHHHHHHHHHHHHHHHTS------C
T ss_pred HHcCC-CcccH---HHHHHHHHHHHHHHhc--CCccCCC------cH-HHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence 99993 22111 2222322222221111 1111111 11 1233445556667777766654321 1
Q ss_pred CCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCC
Q 042142 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRL 347 (376)
Q Consensus 268 ~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~ 347 (376)
....|+++.+++...+ ++..++++++.++++++++||+|||+++++|++++|++||++|+|+|+|+++++++. .
T Consensus 219 ---~~~~d~l~~ll~~~~~--~~~~l~~~~i~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~~~-~ 292 (444)
T 2ve3_A 219 ---PSEEDALGILLAARDD--NNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQ-E 292 (444)
T ss_dssp ---CCCSSHHHHHHHCBCT--TSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHSSCCSS-C
T ss_pred ---CCccCHHHHHHhcccc--CCCCCCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCC-C
Confidence 1246999999975322 123589999999999999999999999999999999999999999999999998854 7
Q ss_pred CCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 348 VEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 348 ~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++++++.+||||+|||+|+||++|++|.
T Consensus 293 ~~~~~l~~lpyl~a~i~E~lRl~p~~~~ 320 (444)
T 2ve3_A 293 LTAETLKKMPYLDQVLQEVLRLIPPVGG 320 (444)
T ss_dssp CCHHHHTTCHHHHHHHHHHHHHSCSSCE
T ss_pred CChhhhhcChHHHHHHHHHHhcCCCccC
Confidence 8999999999999999999999999874
No 19
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=100.00 E-value=1.2e-45 Score=346.50 Aligned_cols=318 Identities=18% Similarity=0.252 Sum_probs=225.8
Q ss_pred CCCCC-CCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccc
Q 042142 33 SLPPS-PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLT 111 (376)
Q Consensus 33 ~~ppg-p~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~ 111 (376)
+.||| |.++|++||++.+..+++..+.+++++|||++++++|+.++++++||+++++|+.+++..|++++........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~- 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI- 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH-
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh-
Confidence 57887 7899999999888888999999999999999999999999999999999999998766667665433222111
Q ss_pred cCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhC
Q 042142 112 YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMG 191 (376)
Q Consensus 112 ~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg 191 (376)
.|. ++ + .+|+.|+++|+.+ .+.|+.+.++.+.+.+.++++++++.+.. ++++|+.+.+..+++|+|+.++||
T Consensus 83 ~g~-~~-~-~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~----~~~vd~~~~~~~~~~~vi~~~~fG 154 (455)
T 2cib_A 83 FGE-GV-V-FDASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGE----AGEIDLLDFFAELTIYTSSACLIG 154 (455)
T ss_dssp HC------------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----EEEEEHHHHHHHHHHHHHHHHHTC
T ss_pred cCC-cc-c-cCcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCC----CCcEeHHHHHHHHHHHHHHHHHcC
Confidence 121 22 2 3589999999997 68899999999999999999998887632 357999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 042142 192 QICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDY 271 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 271 (376)
.+++.... ..+...+........ .....+||+ +.+ ..++..+..+.+.+++..+++++++... .. .
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~p~l---~~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~---~ 220 (455)
T 2cib_A 155 KKFRDQLD--GRFAKLYHELERGTD--PLAYVDPYL---PIE-SFRRRDEARNGLVALVADIMNGRIANPP---TD---K 220 (455)
T ss_dssp HHHHTTCC--HHHHHHHHHHHTTCC--GGGGTCTTC---SCH-HHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred CCcchhhh--HHHHHHHHHHHhhhh--HHHHhcccC---CCh-hHHHHHHHHHHHHHHHHHHHHHHHhccc---CC---C
Confidence 98764321 234444433321111 111122321 111 1233445556677777777766543211 00 0
Q ss_pred CcccHHHHHhcccccCccccc-CCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCc
Q 042142 272 APMDLLDMLLDISEDESSEIK-LTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEE 350 (376)
Q Consensus 272 ~~~dll~~ll~~~~~~~~~~~-l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~ 350 (376)
...|+++.+++...++ +.. ++++++.++++++++||+|||+++++|++++|++||++|+|+|+|+++++++++.+++
T Consensus 221 ~~~dll~~ll~~~~~~--~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~~~~~~~~ 298 (455)
T 2cib_A 221 SDRDMLDVLIAVKAET--GTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGDGRSVSF 298 (455)
T ss_dssp -CCCHHHHHHHCBCTT--SSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred CcccHHHHHHHhhhhc--CCCCCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 1239999999763222 234 8999999999999999999999999999999999999999999999999987667889
Q ss_pred ccCCCChhHHHHHHHHhccCCCCCC
Q 042142 351 SDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 351 ~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+++.+|||++|||+|+||++|++|.
T Consensus 299 ~~l~~lpyl~a~i~E~lRl~p~~~~ 323 (455)
T 2cib_A 299 HALRQIPQLENVLKETLRLHPPLII 323 (455)
T ss_dssp HTTSCCHHHHHHHHHHHHHSCSCCC
T ss_pred HHHhcCHHHHHHHHHHHhcCCcccc
Confidence 9999999999999999999999874
No 20
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=100.00 E-value=1.6e-45 Score=346.89 Aligned_cols=316 Identities=20% Similarity=0.294 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCC-ccccccc
Q 042142 32 SSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI-SATVDYL 110 (376)
Q Consensus 32 ~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~-~~~~~~~ 110 (376)
...||||.++|++||++.+..+++..+.++++ ||||+++++|+.++++++||+++++|+.++ .|..++. .......
T Consensus 22 ~eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~ 98 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL 98 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-------------
T ss_pred CCCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh
Confidence 45688999999999998887888999999988 999999999999999999999999999876 4533322 2111111
Q ss_pred ccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHh
Q 042142 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTM 190 (376)
Q Consensus 111 ~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~f 190 (376)
.|..+ ++..+|+.|+++|+.+ .+.|+.+.++.+.+.+.++++++++.+. .++++|+...+..+++|+++.++|
T Consensus 99 -~g~~~-l~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~----~~~~~d~~~~~~~~~~~vi~~~~~ 171 (467)
T 3dbg_A 99 -LGKEG-VATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQ----PGKTVDATSESFRVAVRVAARCLL 171 (467)
T ss_dssp -------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSC----TTSCEEHHHHHHHHHHHHHHHHHS
T ss_pred -cCCCC-cccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhc----cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 12122 4556799999999997 5889999999999999999999998874 356899999999999999999999
Q ss_pred CcccCCCchhHHHHHHHHHHHHhhhcCccccchhh--hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 042142 191 GQICSNNDKEADEVRKLVQETAELTGKFNLQDYIW--FCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERG 268 (376)
Q Consensus 191 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (376)
|.+++. .....+...+......... ....| ++.+++ ....+++.+..+.+.+++..+++++++. .
T Consensus 172 g~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~------~- 238 (467)
T 3dbg_A 172 RGQYMD--ERAERLCVALATVFRGMYR---RMVVPLGPLYRLP-LPANRRFNDALADLHLLVDEIIAERRAS------G- 238 (467)
T ss_dssp CSSCCH--HHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTC------C-
T ss_pred CCcccc--hhHHHHHHHHHHHHHHHHH---HhccchhhhhhCC-ChHhHHHHHHHHHHHHHHHHHHHHHHhc------C-
Confidence 987763 1233344444433322111 11122 112221 1122334444556666666666554321 1
Q ss_pred CCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCC
Q 042142 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLV 348 (376)
Q Consensus 269 ~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~ 348 (376)
....|+++.+++...++ +..++++++..+++++++||+|||+++++|++++|++||++|+|+|+|++++.++ +.+
T Consensus 239 --~~~~dll~~ll~~~~~~--~~~ls~~ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~ 313 (467)
T 3dbg_A 239 --QKPDDLLTALLEAKDDN--GDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTGG-RPV 313 (467)
T ss_dssp --SSCCSHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTT-SCC
T ss_pred --CCchHHHHHHHhhccCC--CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-CCC
Confidence 13469999999764322 2358999999999999999999999999999999999999999999999999986 678
Q ss_pred CcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 349 EESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 349 ~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+++++++|||++|||+|+||++|++|.
T Consensus 314 ~~~~l~~l~yl~a~i~E~lRl~p~~~~ 340 (467)
T 3dbg_A 314 AFEDVRKLRHTGNVIVEAMRLRPAVWV 340 (467)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHSCSCCC
T ss_pred CHHHHhhCHHHHHHHHHHhhcCCCccc
Confidence 999999999999999999999999975
No 21
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=100.00 E-value=2.1e-44 Score=338.21 Aligned_cols=307 Identities=18% Similarity=0.273 Sum_probs=228.5
Q ss_pred CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc-cc-ccc---ccCCceeEeccCChh
Q 042142 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-TV-DYL---TYGSADFSFAPYGPY 125 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~-~~-~~~---~~~~~~~~~~~~g~~ 125 (376)
+..++..+.+|+++|||||++++|+.+.|+++||+++++|+.++ .|.+++... .. ... ..| .++++..+|+.
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~g~~ 85 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFG-QGLVSECNYER 85 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESST-TSTTTCCCHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccC-CCcccCCChHH
Confidence 34578889999999999999999999999999999999999743 343332211 00 000 011 23344457999
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhCcccCCCchhHHHHH
Q 042142 126 WKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSNNDKEADEVR 205 (376)
Q Consensus 126 w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~ 205 (376)
|+++||.+ .+.|+.+.+..+.+.+.++++.+++.+.+...++.++|+.+.+..+++|+|+.++||.+++.......++.
T Consensus 86 w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~ 164 (456)
T 3mdm_A 86 WHKQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLS 164 (456)
T ss_dssp HHHHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHH
T ss_pred HHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHH
Confidence 99999997 58899999999999999999999999987655667899999999999999999999998875432223333
Q ss_pred HHHHHHHhhhcCccccchhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhccc
Q 042142 206 KLVQETAELTGKFNLQDYIWFCKNIDLQ-GFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDIS 284 (376)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~ 284 (376)
..+.......... ..++.++++.. ...+.+.+..+.+..++..+++++++..+. +. ..+.|+++.+++..
T Consensus 165 ~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~---~~--~~~~d~l~~ll~~~ 235 (456)
T 3mdm_A 165 QAVKLMLEGITAS----RNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR---GE--EVPADILTQILKAE 235 (456)
T ss_dssp HHHHHHHHHHHHH----HHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TC--CCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc--cchhhHHHHHHHhc
Confidence 3333332221110 01111221110 111333444555666667777666554321 11 13469999999753
Q ss_pred ccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHH
Q 042142 285 EDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVK 364 (376)
Q Consensus 285 ~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avik 364 (376)
+ ..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+++++++++.++++++.+||||+|||+
T Consensus 236 -~----~~~~~~~l~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~ 310 (456)
T 3mdm_A 236 -E----GAQDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLK 310 (456)
T ss_dssp -S----SCSSSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCSSCCHHHHHHCHHHHHHHH
T ss_pred -C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCCCCCHHHHhcCHHHHHHHH
Confidence 1 24788999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhccCCCCCC
Q 042142 365 ETLRLHPTGPM 375 (376)
Q Consensus 365 EtlRl~p~~p~ 375 (376)
|+||++|++|.
T Consensus 311 E~lRl~p~~~~ 321 (456)
T 3mdm_A 311 ESLRLYPPAWG 321 (456)
T ss_dssp HHHHHCCSSCC
T ss_pred HHHHhCCCccc
Confidence 99999999985
No 22
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=100.00 E-value=6.4e-45 Score=342.21 Aligned_cols=322 Identities=18% Similarity=0.249 Sum_probs=237.7
Q ss_pred CCCCCCCCC-CCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc-c
Q 042142 29 KITSSLPPS-PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-T 106 (376)
Q Consensus 29 ~~~~~~ppg-p~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~-~ 106 (376)
.++.++||| |+++|++||++.+..+++..+.+++++|||||++++|+.+.|++++|+++++++.++...|..++... .
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~ 86 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRL 86 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHh
Confidence 345678999 88999999998888888999999999999999999999999999999999999987765554322111 1
Q ss_pred ccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHH
Q 042142 107 VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVS 186 (376)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~ 186 (376)
.... .| .+..+..+|+.|+.+||++ .+.|+.+.++.+.+.+.+++.++++.|.+ +..+|+.+.+..+++++++
T Consensus 87 ~~~~-~g-~g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~~~ 159 (461)
T 3i3k_A 87 TTPV-FG-KGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTAS 159 (461)
T ss_dssp HHHH-HC-TTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHH
T ss_pred hhhh-cC-CeeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHHHHHHH
Confidence 1111 12 2334455689999999997 47789999999999999999988887743 3458999999999999999
Q ss_pred HHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042142 187 RMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKE 266 (376)
Q Consensus 187 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 266 (376)
.++||.++.... ...+...+........ .....+| .+++.+ ..++..+..+.+.+++...++++++.
T Consensus 160 ~~~~G~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~P--~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~------ 226 (461)
T 3i3k_A 160 HCLHGKEIRSQL--NEKVAQLYADLDGGFS--HAAWLLP--GWLPLP-SFRRRDRAHREIKDIFYKAIQKRRQS------ 226 (461)
T ss_dssp HHHTCHHHHHTC--CHHHHHHHHHHHTTSS--HHHHHSC--TTSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHccHhhhhHH--HHHHHHHHHHHHhccc--cchhhcc--cccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 999998764321 1222233322211110 0111111 111111 22334455566666666666554211
Q ss_pred cCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCC
Q 042142 267 RGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSR 346 (376)
Q Consensus 267 ~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~ 346 (376)
. ....|+++.+++...++ +..++++++..+++++++||+|||+++++|++++|++||++|+|+|+|+++++|++.
T Consensus 227 ~---~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~l~~ag~~Tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~~~~ 301 (461)
T 3i3k_A 227 Q---EKIDDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENL 301 (461)
T ss_dssp C---CCCCSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCTTC
T ss_pred c---cccccHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCC
Confidence 1 13469999999764332 335899999999999999999999999999999999999999999999999998653
Q ss_pred -CCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 347 -LVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 347 -~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
.++++++.+|||++|||+|+||++|+++.
T Consensus 302 ~~~~~~~~~~l~~l~a~i~E~lRl~p~~~~ 331 (461)
T 3i3k_A 302 PPLTYDQLKDLNLLDRCIKETLRLRPPIMI 331 (461)
T ss_dssp CCCCHHHHHTCHHHHHHHHHHHHHSCSCCC
T ss_pred CCCCHHHHhcChHHHHHHHHHHhcCCCccc
Confidence 45888999999999999999999999864
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=100.00 E-value=7.5e-43 Score=330.69 Aligned_cols=320 Identities=14% Similarity=0.147 Sum_probs=231.7
Q ss_pred cCCCCCCCCCCCC-CCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCc-cccCCCCcc
Q 042142 28 SKITSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHET-SFCDRPISA 105 (376)
Q Consensus 28 ~~~~~~~ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~-~f~~~~~~~ 105 (376)
++.+.+.||||++ +|++||++.+..+++..+.+++++||||+++++|+.++++++||+++++++.+++. .|..++...
T Consensus 8 ~~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~ 87 (491)
T 3v8d_A 8 RRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFAL 87 (491)
T ss_dssp CCCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHH
T ss_pred hccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHH
Confidence 4455678999998 69999999999999999999999999999999999999999999999999976542 232222111
Q ss_pred cccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhc---CCCceehHHHHHHHHH
Q 042142 106 TVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAK---ASEAVDVGKELIRLTN 182 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~~vd~~~~~~~~~~ 182 (376)
.....+.+ .....+|+.|+++|+.+ .+.|+++.+..+.+.+.+++.++++.+..... .+..+++.+.+..+++
T Consensus 88 ~~~~~g~~---~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (491)
T 3v8d_A 88 SAKAFGHR---SIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163 (491)
T ss_dssp HHHHHTCC---CCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHH
T ss_pred HHHhcCCc---ccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHH
Confidence 11222222 23334699999999976 57899999999999999999988875433222 3456899999999999
Q ss_pred HHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 183 NVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARK 262 (376)
Q Consensus 183 dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (376)
++++..+||.+++..+.....+....+.+.. +...+|.+.........++..++.+.+.+.+...+.+ +
T Consensus 164 ~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~p~~~~~~~~~a~~~l~~~~~~~~~~---~-- 232 (491)
T 3v8d_A 164 EAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLPIHMFRTAHNAREKLAESLRHENLQ---K-- 232 (491)
T ss_dssp HHHHHHHHCBCCSCGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCCGGGCHHHHHHHHHHHHHTSHHHHT---T--
T ss_pred HHHHHHHcCccccccchhhhhhHHHHHHHHH------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHh---c--
Confidence 9999999999876443333333333333221 1122222211111222334444444433333222211 1
Q ss_pred hhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhh
Q 042142 263 INKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVV 342 (376)
Q Consensus 263 ~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~ 342 (376)
.. ...|+++.++....+ ...++++++..+++.+++||+|||+++++|++++|++||++|+|+|+||++++
T Consensus 233 ---~~----~~~d~l~~l~~~~~~---~~~~~~~ei~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~ 302 (491)
T 3v8d_A 233 ---RE----SISELISLRMFLNDT---LSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTL 302 (491)
T ss_dssp ---CB----SCCHHHHHHHHHHHH---HBCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ---cc----cccHHHHHHHHHhhc---cCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 01 246899988865322 23589999999999999999999999999999999999999999999999998
Q ss_pred CCC----------CCCCcccCCCChhHHHHHHHHhccCCC
Q 042142 343 GKS----------RLVEESDIINLPYLQALVKETLRLHPT 372 (376)
Q Consensus 343 ~~~----------~~~~~~~l~~lpyl~avikEtlRl~p~ 372 (376)
+++ ..++++++.+||||+|||+|+||++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~a~i~E~lRl~p~ 342 (491)
T 3v8d_A 303 ENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSA 342 (491)
T ss_dssp HHTTCCCCSSSSCCCCCHHHHHCCHHHHHHHHHHHHHHEE
T ss_pred hccccccccccccccCCHHHHhcChHHHHHHHHHhhcCCC
Confidence 643 346778889999999999999999985
No 24
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=100.00 E-value=1.3e-41 Score=322.23 Aligned_cols=320 Identities=15% Similarity=0.193 Sum_probs=217.4
Q ss_pred hcCCCCCCCCCCCC-CCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCC-ccccCCCCc
Q 042142 27 RSKITSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHE-TSFCDRPIS 104 (376)
Q Consensus 27 ~~~~~~~~ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~-~~f~~~~~~ 104 (376)
.++.+.+.||||++ +|++||++.+..+++..+.+++++||++|++++|+.++|+++||+++++++.++. ..|......
T Consensus 7 ~~~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~ 86 (491)
T 3dax_A 7 SRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86 (491)
T ss_dssp CCCCCTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH
T ss_pred hhccCCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH
Confidence 34445578899887 8999999988888899999999999999999999999999999999999998654 223221111
Q ss_pred ccccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHh---hcCCCceehHHHHHHHH
Q 042142 105 ATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKK---AKASEAVDVGKELIRLT 181 (376)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~vd~~~~~~~~~ 181 (376)
...... |. +.....+|+.|+++|+.+. +.|+.+.+..+.+.+.+++.+.++..... ...+..+++...+..++
T Consensus 87 ~~~~~~--g~-~~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i 162 (491)
T 3dax_A 87 TSAKAF--GH-RSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVM 162 (491)
T ss_dssp HHHHHH--TC-CCCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHH
T ss_pred HHHHHc--CC-CcccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHH
Confidence 111111 21 2221445888999998864 57788888888888877777776654322 12234578999999999
Q ss_pred HHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhh-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 182 NNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFC-KNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEA 260 (376)
Q Consensus 182 ~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (376)
+++++...||.+++..+.....+......... +...+|++ +.++ ....+...+..+.+.+ .+.+++.+
T Consensus 163 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~l~~~lp-~~~~~~~~~~~~~~~~---~~~~~~~~- 231 (491)
T 3dax_A 163 FEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLP-IHMFRTAHNAREKLAE---SLRHENLQ- 231 (491)
T ss_dssp HHHHHHHHHCBCSTTGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCC-GGGSHHHHHHHHHHHH---HTSHHHHT-
T ss_pred HHHhHHHHcCcccccccchhhhhhHHHHHHHH------HHHHhHHHHHhCC-HhhhhHHHHHHHHHHH---HHHHHHhh-
Confidence 99999999998765432221122222221110 11223332 2221 1122222332222222 11222111
Q ss_pred HHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 261 RKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 261 ~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
... ...|+++.+++...+ ...++++++.++++++++||+|||+++++|++++|++||++|+|+|+||++
T Consensus 232 ----~~~----~~~d~l~~ll~~~~~---~~~~~~~~i~~~~~~~~~ag~~tta~tl~~~l~~L~~~P~~~~kl~~Ei~~ 300 (491)
T 3dax_A 232 ----KRE----SISELISLRMFLNDT---LSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKR 300 (491)
T ss_dssp ----TCB----SCCHHHHHHHHHHHH---HBCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ----ccc----chhHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHhccchHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 011 246899988765322 124788999999999999999999999999999999999999999999999
Q ss_pred hhCCCC----------CCCcccCCCChhHHHHHHHHhccCCC
Q 042142 341 VVGKSR----------LVEESDIINLPYLQALVKETLRLHPT 372 (376)
Q Consensus 341 v~~~~~----------~~~~~~l~~lpyl~avikEtlRl~p~ 372 (376)
++++++ .++++++.+||||+|||+||||++|+
T Consensus 301 v~~~~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~ 342 (491)
T 3dax_A 301 TLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSA 342 (491)
T ss_dssp HHHTTTCCCCSSSCCCCCCHHHHHCCHHHHHHHHHHHHHHEE
T ss_pred HhhccccccccCCCccccCHHHHhcCHHHHHHHHHHHhcCCC
Confidence 987543 25888999999999999999999975
No 25
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=100.00 E-value=2.9e-39 Score=300.81 Aligned_cols=284 Identities=17% Similarity=0.211 Sum_probs=206.7
Q ss_pred cCCCCCCCCCCCCCCcccccc-ccCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCCcc
Q 042142 28 SKITSSLPPSPMALPIIGHLH-LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISA 105 (376)
Q Consensus 28 ~~~~~~~ppgp~~~p~lG~~~-~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~ 105 (376)
.+++++.||||+++|++|++. .+..+++..+.++ ++||||+++++ |+.++++++||+++++|+.++ .|.+++...
T Consensus 21 ~~~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~ 97 (436)
T 2cd8_A 21 MRRTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNS 97 (436)
T ss_dssp -------------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGC
T ss_pred cchhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccc
Confidence 345567799999999999985 4567889999999 89999999997 788899999999999999875 466654311
Q ss_pred cccc----cccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHH
Q 042142 106 TVDY----LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRL 180 (376)
Q Consensus 106 ~~~~----~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~ 180 (376)
.... ...+ .+ ++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.+ ..++++|+...+ ..+
T Consensus 98 ~~~~~~~~~~~~-~~-l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~ 172 (436)
T 2cd8_A 98 TTPLTEAEAALN-HN-MLESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLA--APDGRADLMESLAWPL 172 (436)
T ss_dssp SSCCCTTGGGTC-CS-GGGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHT--CTTSCEEHHHHTTTHH
T ss_pred cccccccccccc-cc-ccccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCcchHHHHHHHH
Confidence 1111 1111 22 4456899999999997 57899999999999999999999999974 225689999977 579
Q ss_pred HHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 181 TNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEA 260 (376)
Q Consensus 181 ~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (376)
++|+|+. +||.+.. ....+......+.. . . + .++..+..+.+.+++..+++++++
T Consensus 173 ~~~vi~~-~~G~~~~----~~~~~~~~~~~~~~----~--~---~----------~~~~~~~~~~~~~~~~~~i~~r~~- 227 (436)
T 2cd8_A 173 PITVISE-LLGVPEP----DRAAFRVWTDAFVF----P--D---D----------PAQAQTAMAEMSGYLSRLIDSKRG- 227 (436)
T ss_dssp HHHHHHH-HHTCCGG----GHHHHHHHHHHHHS----C--S---S----------TTHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHH-HhCCCHH----HHHHHHHHHHHHhc----c--C---C----------HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999998 6998654 22334333333221 0 0 0 023344556666777776665431
Q ss_pred HHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 261 RKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 261 ~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
. ...|+++.|++...+ ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+
T Consensus 228 ------~----~~~d~l~~ll~~~~~--~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~e~-- 293 (436)
T 2cd8_A 228 ------Q----DGEDLLSALVRTSDE--DGSRLTSEELLGMAHILLVAGHETTVNLIANGMYALLSHPDQLAALRADM-- 293 (436)
T ss_dssp ------S----CCCSHHHHHHHHHHH--CTTTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCHHHHHHHHHCG--
T ss_pred ------C----CCCCHHHHHHHhhhc--cCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHhhCh--
Confidence 1 235899999875322 12358999999999999999999999999999999999999999999985
Q ss_pred hhCCCCCCCcccCCCChhHHHHHHHHhccCCCCC
Q 042142 341 VVGKSRLVEESDIINLPYLQALVKETLRLHPTGP 374 (376)
Q Consensus 341 v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p 374 (376)
.|++|||+|+||++||+|
T Consensus 294 ----------------~~l~a~i~E~lRl~p~~~ 311 (436)
T 2cd8_A 294 ----------------TLLDGAVEEMLRYEGPVE 311 (436)
T ss_dssp ----------------GGHHHHHHHHHHHHCSBS
T ss_pred ----------------hhHHHHHHHHHHhcCccc
Confidence 379999999999999998
No 26
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=100.00 E-value=1.4e-39 Score=308.82 Aligned_cols=322 Identities=12% Similarity=0.107 Sum_probs=211.1
Q ss_pred HhcCCCCCCCCCCCC-CCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCc
Q 042142 26 RRSKITSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS 104 (376)
Q Consensus 26 ~~~~~~~~~ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~ 104 (376)
+..+++.+.||||++ +|++||++.+..+++..+.+++++|||||++++|+.++|+++||+++++++.++...+..++..
T Consensus 11 ~~~~~~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~ 90 (498)
T 3b6h_A 11 RRRTRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYA 90 (498)
T ss_dssp --CCCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHH
T ss_pred HHhccCCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhH
Confidence 344556678999988 8999999888777899999999999999999999999999999999999998765323322211
Q ss_pred c-cccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHh-hcCCCceehHHHHHHHHH
Q 042142 105 A-TVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKK-AKASEAVDVGKELIRLTN 182 (376)
Q Consensus 105 ~-~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~vd~~~~~~~~~~ 182 (376)
. ..... .|. +. +..+|+.|++.+ .+.|+.+.+..+.+.+.+++...++..... ...+..+++...+..+++
T Consensus 91 ~~~~~~~-~g~-~~-~~~~~~~~rr~~----~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~ 163 (498)
T 3b6h_A 91 IFLMERI-FDV-QL-PHYSPSDEKARM----KLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLL 163 (498)
T ss_dssp HHHHHHT-SCC-CC-TTCCHHHHHHHH----HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHH
T ss_pred HHHHHHH-cCC-Cc-cccCHHHHHHHH----HHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHH
Confidence 1 11111 121 22 234577775433 346777788888777777777766654332 123345789999999999
Q ss_pred HHHHHHHhCcccCCCchhH-HHHHHHHHHHHhhhcCccccchhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 183 NVVSRMTMGQICSNNDKEA-DEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ-GFGKRLKEVRRKFDNMMERIIKEHQEA 260 (376)
Q Consensus 183 dvi~~~~fg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (376)
++++..+||.+++..+... ......+........ .+...+|++.....+ ...+...+..+. +.+.+.+++.+
T Consensus 164 ~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~- 237 (498)
T 3b6h_A 164 RAGYLTLYGIEALPRTHESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSR---LWKLLSPARLA- 237 (498)
T ss_dssp HHHHHHHHCBSCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHH---HHHHTCHHHHT-
T ss_pred HHHHHhhcCcccccccccchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHH---HHHHHHHHHHh-
Confidence 9999999998875443211 112222222222111 112233332111111 111122222222 22221222111
Q ss_pred HHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 261 RKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 261 ~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
... ...|+++.+++...+. ..++++++. +++++++||+|||+++++|++++|++||++|+|+|+|+++
T Consensus 238 ----~~~----~~~d~l~~ll~~~~~~---~~~~~~~~~-~~~~~l~ag~~tt~~~l~~~l~~L~~~P~~~~kl~~Ei~~ 305 (498)
T 3b6h_A 238 ----RRA----HRSKWLESYLLHLEEM---GVSEEMQAR-ALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELES 305 (498)
T ss_dssp ----TCB----SCCHHHHHHHHHHHHT---TCCHHHHHH-HHHHHHHHHHTTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----ccc----cHHHHHHHHHHHHHhC---CCCHHHHHH-HHHHHHHHhhhchHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 011 2469999988653221 236677777 8888999999999999999999999999999999999999
Q ss_pred hhCCCCC-------CCcccCCCChhHHHHHHHHhccCCC
Q 042142 341 VVGKSRL-------VEESDIINLPYLQALVKETLRLHPT 372 (376)
Q Consensus 341 v~~~~~~-------~~~~~l~~lpyl~avikEtlRl~p~ 372 (376)
++|+++. ++.+|+.+||||+|||+|+||++|+
T Consensus 306 v~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~ 344 (498)
T 3b6h_A 306 ILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAA 344 (498)
T ss_dssp HHHC----------CCTHHHHSCHHHHHHHHHHHHHHBC
T ss_pred HhcccCCCCCcccccCHHHHhcCHHHHHHHHHHHhccCC
Confidence 9986543 5889999999999999999999985
No 27
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=100.00 E-value=7.6e-37 Score=282.22 Aligned_cols=282 Identities=11% Similarity=0.133 Sum_probs=206.4
Q ss_pred CCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHhCC-ccccCCCCcccccc--
Q 042142 34 LPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKTHE-TSFCDRPISATVDY-- 109 (376)
Q Consensus 34 ~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~~~-~~f~~~~~~~~~~~-- 109 (376)
+||||+++|++|++.. +|+..+.++. +||||+++.++ +.+.+++++++.+++++.++. ..+..++.......
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 5999999999999764 7888898886 69999998874 566777899999999998763 23333332221110
Q ss_pred --cccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHH
Q 042142 110 --LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (376)
Q Consensus 110 --~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~ 187 (376)
...+.. .++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.+...++.++|+...+...+.++++.
T Consensus 78 ~~~~~~~~-~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 78 KQAAKAKP-TFVDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHTTSCC-CGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred cchhcccC-cccccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 111222 24456799999999996 68899999999999999999999999987543456899999999999999999
Q ss_pred HHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042142 188 MTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKER 267 (376)
Q Consensus 188 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (376)
.+||.+++. .+......... .. +. ...+...+..+.+.+++..+++++++ .
T Consensus 156 ~~~G~~~~~-----~~~~~~~~~~~---~~--------~~------~~~~~~~~~~~~~~~~~~~~i~~r~~-------~ 206 (404)
T 1jfb_A 156 TLLGVPFND-----LEYLTQQNAIR---TN--------GS------STAREASAANQELLDYLAILVEQRLV-------E 206 (404)
T ss_dssp HHHTCCGGG-----HHHHHHHHHHH---HC--------TT------SCHHHHHHHHHHHHHHHHHHHHHHHH-------S
T ss_pred HHcCCCHHH-----HHHHHHHHHHH---hc--------cC------cchHHHHHHHHHHHHHHHHHHHHHHh-------C
Confidence 999986642 11211111110 00 00 01133445556667777777765432 1
Q ss_pred CCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCC
Q 042142 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRL 347 (376)
Q Consensus 268 ~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~ 347 (376)
...|+++.+++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|++
T Consensus 207 ----~~~d~l~~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~~---------- 269 (404)
T 1jfb_A 207 ----PKDDIISKLCTEQVK---PGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLKAN---------- 269 (404)
T ss_dssp ----CCSSHHHHHHHHTTT---TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHC----------
T ss_pred ----CCCcHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHhC----------
Confidence 135999999864322 235899999999999999999999999999999999999999999992
Q ss_pred CCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 348 VEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 348 ~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
.+|++|||+|+||++|++|.
T Consensus 270 --------~~yl~a~i~E~lRl~p~~~~ 289 (404)
T 1jfb_A 270 --------PSLAPQFVEELCRYHTASAL 289 (404)
T ss_dssp --------GGGHHHHHHHHHHHSCSCCS
T ss_pred --------hHhHHHHHHHHHhhCCCccc
Confidence 37999999999999999983
No 28
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=100.00 E-value=9.9e-39 Score=302.75 Aligned_cols=319 Identities=13% Similarity=0.088 Sum_probs=208.6
Q ss_pred CCCCCCCCCCCCCCcccccccc-----CCCchHHHHHHHHhcCC-eEEEecCCccE-------EEccCHHHHHHHHHhCC
Q 042142 29 KITSSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGP-LIHLFLGSVPC-------IVACSPETAKEILKTHE 95 (376)
Q Consensus 29 ~~~~~~ppgp~~~p~lG~~~~~-----~~~~~~~~~~~~~~yG~-i~~~~~g~~~~-------v~i~dp~~~~~il~~~~ 95 (376)
..+.+.||||+++|++|+++.+ ..+++.++.++.++||+ ||++++++.++ +++++++..+.++....
T Consensus 24 ~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~ 103 (495)
T 3dsk_A 24 DLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDK 103 (495)
T ss_dssp CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccc
Confidence 4456789999999999998766 47889999999999999 99999998888 56666666655554321
Q ss_pred ----ccccCCCCcccccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCce
Q 042142 96 ----TSFCDRPISATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAV 171 (376)
Q Consensus 96 ----~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v 171 (376)
..|.+.... .....+.......+..+|+.|+++|+++. +.|+.. ...+.+.+.+.+.++++.|.+...+++++
T Consensus 104 v~k~~~~~~~~~~-~~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~v 180 (495)
T 3dsk_A 104 VEKKDLLTGTYMP-STELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSS-RNRIFPEFQATYSELFDSLEKELSLKGKA 180 (495)
T ss_dssp EECSSCTTSSSCC-CGGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHT-TTTHHHHHHHHHHHHHHHHHHHHHHHSSE
T ss_pred ccccccccccCCC-CccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 222221111 11222211122344567999999999975 667765 48899999999999999998754445689
Q ss_pred ehHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhh-hhhhhcccchhHHHHHHHHHHHHHH
Q 042142 172 DVGKELIRLTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIW-FCKNIDLQGFGKRLKEVRRKFDNMM 250 (376)
Q Consensus 172 d~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
|+.+.+..+++++++.++||.+++..+ ....+...+...............+| ++..+ +.+..+.-...+
T Consensus 181 dl~~~~~~~~~~~i~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~--------~~~~~~~~~~~~ 251 (495)
T 3dsk_A 181 DFGGSSDGTAFNFLARAFYGTNPADTK-LKADAPGLITKWVLFNLHPLLSIGLPRVIEEP--------LIHTFSLPPALV 251 (495)
T ss_dssp ESHHHHHHHHHHHHHHHHHSCCGGGST-TTTCHHHHHHHHHHHHHGGGCCCSSCHHHHHH--------HHSSSCCCGGGG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcchhh-hhhhHHHHHHHHHHHhhhhHhHhccHHHHHHH--------HHHhhcccchhh
Confidence 999999999999999999998776432 11112222222211100000000011 00000 000000000000
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHh-hcCCcchHHHHHHHHHHHhh-Ch
Q 042142 251 ERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIF-AAGTDTSAITVEWALAELIN-HP 328 (376)
Q Consensus 251 ~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~-~aG~dTTa~~l~~~l~~L~~-~P 328 (376)
....++..+.. .+..+.+++..+ +..++++++..+++.++ +||+|||+.+++|++++|+. ||
T Consensus 252 ~~~~~~~~~~~------------~~~~~~ll~~~~----~~~l~~~ei~~~~~~~l~~ag~~tt~~~l~~~l~~L~~~~P 315 (495)
T 3dsk_A 252 KSDYQRLYEFF------------LESAGEILVEAD----KLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGH 315 (495)
T ss_dssp HHHHHHHHHHH------------HHHCHHHHHHHH----HTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhHHHHHHHH------------HHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCH
Confidence 00000000000 112223332211 12488999998776665 99999999999999999995 99
Q ss_pred HHHHHHHHHHhhhhCCC-CCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 329 DMMKKAREEIDSVVGKS-RLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 329 ~v~~~l~~Ei~~v~~~~-~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
++|+|+|+|++++++++ +.++++++++||||+|||+|+||++|++|.
T Consensus 316 ~~~~~lr~Ei~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~ 363 (495)
T 3dsk_A 316 QVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTA 363 (495)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCHHHHHTCHHHHHHHHHHHHHSCSSCE
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhcCCCccc
Confidence 99999999999998754 678999999999999999999999999985
No 29
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=100.00 E-value=9e-37 Score=281.64 Aligned_cols=275 Identities=15% Similarity=0.179 Sum_probs=206.3
Q ss_pred CCCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEe----c-CC-ccEEEccCHHHHHHHH-HhCCccccCCCC
Q 042142 31 TSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLF----L-GS-VPCIVACSPETAKEIL-KTHETSFCDRPI 103 (376)
Q Consensus 31 ~~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~----~-g~-~~~v~i~dp~~~~~il-~~~~~~f~~~~~ 103 (376)
..++||||+++|+. +..+++..+.++ ++||||++++ + |+ .++++++||+++++|+ .++ .|.+++.
T Consensus 8 ~~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~ 79 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQ 79 (406)
T ss_dssp CCCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCC
T ss_pred CCCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccccc
Confidence 45689999999986 457889999999 9999999999 6 88 8999999999999999 543 2544432
Q ss_pred ccccc-cccc---CCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHH
Q 042142 104 SATVD-YLTY---GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIR 179 (376)
Q Consensus 104 ~~~~~-~~~~---~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~ 179 (376)
..... .+.. ...+ ++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.. .++++|+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~-l~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~ 154 (406)
T 1ued_A 80 FTQSKSGAHVEAQFVGQ-ISTYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGLFAD 154 (406)
T ss_dssp C---------CGGGTTC-GGGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHHTHH
T ss_pred ccccccccccccccccc-cccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHH
Confidence 11110 0100 1112 4456899999999997 58899999999999999999999999974 2568999998875
Q ss_pred -HHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042142 180 -LTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQ 258 (376)
Q Consensus 180 -~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (376)
+++|+|+ .+||.+.+ ..+.+......+.. .. ...++..+..+.+.+++..++++++
T Consensus 155 ~~~~~vi~-~~~G~~~~----~~~~~~~~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~i~~r~ 211 (406)
T 1ued_A 155 PVGAHALC-ELLGIPRD----DQREFVRRIRRNAD----LS--------------RGLKARAADSAAFNRYLDNLLARQR 211 (406)
T ss_dssp HHHHHHHH-HHHTCCHH----HHHHHHHHHHHCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHH-HHcCCCHH----HHHHHHHHHHHHHh----cc--------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 57997542 22233332222110 00 0012344555666777777776653
Q ss_pred HHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHH
Q 042142 259 EARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEI 338 (376)
Q Consensus 259 ~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei 338 (376)
+ . ...|+++.|++.. +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+
T Consensus 212 ~-------~----~~~d~l~~ll~~~-----~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~ 275 (406)
T 1ued_A 212 A-------D----PDDGLLGMIVRDH-----GDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQIELLFESP 275 (406)
T ss_dssp H-------S----CCSSHHHHHHHHH-----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTHHHHCH
T ss_pred h-------C----CCCCHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhChHHHHHHHhCH
Confidence 2 1 1358999998753 1258999999999999999999999999999999999999999999986
Q ss_pred hhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 339 DSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 339 ~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+ |++|||+|+||++|++|.
T Consensus 276 ~------------------~l~a~i~E~lRl~p~~~~ 294 (406)
T 1ued_A 276 E------------------KAERVVNELVRYLSPVQA 294 (406)
T ss_dssp H------------------HHHHHHHHHHHHHCSSCS
T ss_pred H------------------HHHHHHHHHHhcCCCccc
Confidence 4 699999999999999984
No 30
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=100.00 E-value=3.9e-37 Score=286.10 Aligned_cols=295 Identities=16% Similarity=0.134 Sum_probs=209.2
Q ss_pred CCCCCCCCCCCCCccccccccC-----CCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCC
Q 042142 30 ITSSLPPSPMALPIIGHLHLLA-----PIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI 103 (376)
Q Consensus 30 ~~~~~ppgp~~~p~lG~~~~~~-----~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~ 103 (376)
.+.++||| ++|++.... .+|+..+.++.+ ||||++++. |+.+++++++|+.++++++++ ..|++++.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 34577888 889864442 457888888876 799999998 788999999999999999764 46877664
Q ss_pred -cccc---c---c---ccc--CCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCce
Q 042142 104 -SATV---D---Y---LTY--GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAV 171 (376)
Q Consensus 104 -~~~~---~---~---~~~--~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v 171 (376)
.... . . .+. +....++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.+. ++++
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~ 151 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDF---DGEC 151 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTS---SSEE
T ss_pred cccCCcccccchhccccccccccccccccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHh---CCCe
Confidence 2211 1 1 110 111224456799999999997 588999999999999999999999998652 3579
Q ss_pred ehHHH-HHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHH
Q 042142 172 DVGKE-LIRLTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMM 250 (376)
Q Consensus 172 d~~~~-~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
|+... ...+++|+|+.+ ||.+.+. ...+............ . ....+|+++.+ .+...++..+..+.+.+++
T Consensus 152 d~~~~~~~~~~~~vi~~~-fG~~~~~----~~~~~~~~~~~~~~~~-~-~~~~~P~l~~~-~~~~~~~~~~~~~~~~~~~ 223 (428)
T 1cpt_A 152 DFMTDCALYYPLHVVMTA-LGVPEDD----EPLMLKLTQDFFGVHE-P-DEQAVAAPRQS-ADEAARRFHETIATFYDYF 223 (428)
T ss_dssp EHHHHTTTTHHHHHHHHH-HTCCGGG----HHHHHHHHHTTTCC-------------------CHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHhhhHHHHHHHH-cCCCHhH----HHHHHHHHHHHHhccc-c-ccccccccccc-chhhHHHHHHHHHHHHHHH
Confidence 99855 457999999999 9987642 2233333222211100 0 01122333221 1122234455556666777
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHH
Q 042142 251 ERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDM 330 (376)
Q Consensus 251 ~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v 330 (376)
...++++++ + ...|+++.|++...+ +..++++++.+++.++++||+|||+++++|++++|++||++
T Consensus 224 ~~~i~~r~~-------~----~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~ 289 (428)
T 1cpt_A 224 NGFTVDRRS-------C----PKDDVMSLLANSKLD---GNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQ 289 (428)
T ss_dssp HHHHHHHTT-------S----CCSSHHHHHHHCBSS---SSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHc-------C----CCCcHHHHHHhcccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 666665431 1 235999999976322 23589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 331 MKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 331 ~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
|+|+++|++ |++|||+|+||++|++|.
T Consensus 290 ~~~l~~E~~------------------~l~a~i~E~lRl~p~~~~ 316 (428)
T 1cpt_A 290 LALAKSDPA------------------LIPRLVDEAVRWTAPVKS 316 (428)
T ss_dssp HHHHHHCGG------------------GHHHHHHHHHHHHCCBCC
T ss_pred HHHHHHhHH------------------HHHHHHHHHHHhCCcccc
Confidence 999999974 899999999999999874
No 31
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=100.00 E-value=7.7e-38 Score=295.12 Aligned_cols=310 Identities=15% Similarity=0.149 Sum_probs=195.5
Q ss_pred HhcCCCCCCCCCCCC-CCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCc
Q 042142 26 RRSKITSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS 104 (376)
Q Consensus 26 ~~~~~~~~~ppgp~~-~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~ 104 (376)
..++.+.+.||||++ +|++||++.+..+++..+.+++++|||||++++|+.++++++||+++++++.++.. +..++..
T Consensus 11 ~~~~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~ 89 (475)
T 3b98_A 11 GRRTRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYA 89 (475)
T ss_dssp --CCCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHH
T ss_pred hhcccCCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHH
Confidence 334455678999988 99999998887789999999999999999999999999999999999999986542 3222111
Q ss_pred -ccccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhh--cCCCceehHHHHHHHH
Q 042142 105 -ATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKA--KASEAVDVGKELIRLT 181 (376)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~--~~~~~vd~~~~~~~~~ 181 (376)
...... .|. +. +..+|+.|+ +.+ .+.|+.+.+..+.+.+.+++..+++.+.... .....+++...+..++
T Consensus 90 ~~~~~~~-~g~-~~-~~~~~~~~R---~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (475)
T 3b98_A 90 QVLMKRI-FNM-IL-PSHNPESEK---KRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLL 162 (475)
T ss_dssp HHHHHHT-TCC-CC-TTCCHHHHH---HHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHH
T ss_pred HHHHHHH-hCC-CC-CCCChHHHH---HHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHH
Confidence 111111 121 22 244566664 443 4578888899999988888888877654321 1223567888888888
Q ss_pred HHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 182 NNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ-GFGKRLKEVRRKFDNMMERIIKEHQEA 260 (376)
Q Consensus 182 ~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (376)
+++++...||.+.. ....+......... +...+|++.....+ ...+...+..+. +.+.+.+++
T Consensus 163 ~~~~~~~~~g~~~~----~~~~~~~~~~~~~~------~~~~~p~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--- 226 (475)
T 3b98_A 163 FKTGYLTVFGAENN----NSAALTQIYEEFRR------FDKLLPKLARTTVNKEEKQIASAAREK---LWKWLTPSG--- 226 (475)
T ss_dssp HHHHHHHHHCCTTS----CHHHHHHHHHHHHH------HHHHHHHHHTTCCCHHHHHHHHHHHHH---HHHHHSCTT---
T ss_pred HHHhhhheeCCccc----cchhcHHHHHHHHH------HHhhhHHHHHHhcChhhhHHHHHHHHH---HHHHHHHHH---
Confidence 88888888885321 11222222222211 11122322110011 111111111111 111111110
Q ss_pred HHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 261 RKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 261 ~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
... .....|+++.+++...++ +.++++++. +++++++||+|||+++++|++++|++||++|+|+|+|++
T Consensus 227 ----~~~--~~~~~d~l~~ll~~~~~~---~~~~~~~i~-~~~~~l~ag~~TTa~~l~~~l~~L~~~P~~~~~l~~Ei~- 295 (475)
T 3b98_A 227 ----LDR--KPREQSWLGSYVKQLQDE---GIDAEMQRR-AMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEIQ- 295 (475)
T ss_dssp ----SCC--CCCTTSHHHHHHHHHHHT---TCCHHHHHH-HHHHHHHHHHSSHHHHHHHHHHHHHTCHHHHHHHHHHHC-
T ss_pred ----hhc--cccccHHHHHHHHHHHHc---CCCHHHHHH-HHHHHHHHccccHHHHHHHHHHHHHcCHHHHHHHHHHHh-
Confidence 001 113469999998653221 247788888 999999999999999999999999999999999999998
Q ss_pred hhCCCCCCCcccCCCChhHHHHHHHHhccCCC
Q 042142 341 VVGKSRLVEESDIINLPYLQALVKETLRLHPT 372 (376)
Q Consensus 341 v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~ 372 (376)
.+. +.++++++.+||||+|||+|+||++|+
T Consensus 296 -~~~-~~~~~~~~~~lpyl~a~i~E~lRl~p~ 325 (475)
T 3b98_A 296 -GGK-HLRLEERQKNTPVFDSVLWETLRLTAA 325 (475)
T ss_dssp --------------CCHHHHHHHHHHHHHHEE
T ss_pred -cCC-CCCCHHHHhcCHHHHHHHHHHHhcCCc
Confidence 232 356899999999999999999999986
No 32
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=100.00 E-value=2.2e-37 Score=284.30 Aligned_cols=267 Identities=20% Similarity=0.234 Sum_probs=195.5
Q ss_pred CCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCC-CcccccccccCCc
Q 042142 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP-ISATVDYLTYGSA 115 (376)
Q Consensus 37 gp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~-~~~~~~~~~~~~~ 115 (376)
+++.+|++||++.+..+++..+.+++++|||+++ ++|+.++++++||+++++|+.++ .|.+++ ........ .| .
T Consensus 3 ~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~-~g-~ 77 (389)
T 1n97_A 3 RLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRL-TG-R 77 (389)
T ss_dssp ECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHH-HC-S
T ss_pred ccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHH-hC-C
Confidence 4456899999988877889999999999999999 99999999999999999999876 676654 21111111 12 2
Q ss_pred eeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhCcccC
Q 042142 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICS 195 (376)
Q Consensus 116 ~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 195 (376)
+ ++..+|+.|+++||.+ .+.|+++.++.+.+.+.++++++++.+. ++++|+.+.+..+++|+|+.++||.+++
T Consensus 78 ~-l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi~~~~fG~~~~ 150 (389)
T 1n97_A 78 G-LLTDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKPLS 150 (389)
T ss_dssp S-TTTCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred c-cccCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHHHHHHcCCcch
Confidence 3 3456799999999997 5889999999999999999999988874 4689999999999999999999999876
Q ss_pred CCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 042142 196 NNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMD 275 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d 275 (376)
+ ++.+.+........ ....+ ++.+++. ...++..+..+.+.+++...+ . ..
T Consensus 151 --~----~~~~~~~~~~~~~~-~~~~~---~~~~~p~-~~~~~~~~~~~~~~~~~~~~i------------~----~r-- 201 (389)
T 1n97_A 151 --P----SLAEHALKALDRIM-AQTRS---PLALLDL-AAEARFRKDRGALYREAEALI------------V----HP-- 201 (389)
T ss_dssp --H----HHHHHHHHHHHHHH-HHHHC---GGGGGCH-HHHHHHHHHHHHHHHHHGGGT------------T----ST--
T ss_pred --H----HHHHHHHHHHHHHH-HHHhh---HHHhcCC-chhHHHHHHHHHHHHHHHHHH------------H----HH--
Confidence 2 33333333322211 00111 1122211 111112121111111111111 0 01
Q ss_pred HHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCC
Q 042142 276 LLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIIN 355 (376)
Q Consensus 276 ll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~ 355 (376)
++ ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++.
T Consensus 202 ----ll---------~~l~~~~l~~~~~~~~~aG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~~~~------------- 255 (389)
T 1n97_A 202 ----PL---------SHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAAL------------- 255 (389)
T ss_dssp ----TG---------GGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH-------------
T ss_pred ----hc---------ccCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------------
Confidence 22 1378999999999999999999999999999999999999999999999875
Q ss_pred ChhHHHHHHHHhccCCCCCC
Q 042142 356 LPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 356 lpyl~avikEtlRl~p~~p~ 375 (376)
|||+|+||++|++|.
T Consensus 256 -----a~i~E~lRl~p~~~~ 270 (389)
T 1n97_A 256 -----AAFQEALRLYPPAWI 270 (389)
T ss_dssp -----HHHHHHHHHSCSSCC
T ss_pred -----HHHHHHHhcCCCccc
Confidence 999999999999985
No 33
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=100.00 E-value=3.9e-36 Score=278.67 Aligned_cols=282 Identities=15% Similarity=0.108 Sum_probs=205.8
Q ss_pred CCccccccccCCCchHHHHHHHHhcC-CeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc--cccccccCCcee
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA--TVDYLTYGSADF 117 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG-~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~--~~~~~~~~~~~~ 117 (376)
.|++||+..+..+++..+.+++++|| ||+++.+++.++++++||++++.++ +. ..|..++... ..... .|. +.
T Consensus 8 ~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~-~g~-~~ 83 (417)
T 1izo_A 8 DKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-DT-DRFQRQNALPKRVQKSL-FGV-NA 83 (417)
T ss_dssp CCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-CT-TTEECTTCSCHHHHTTT-TCT-TC
T ss_pred CCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-cc-cccccccccccchhhhh-ccc-cc
Confidence 49999998887788999999999998 9999998889999999999998544 33 3454432211 11111 121 22
Q ss_pred EeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhCcccCCC
Q 042142 118 SFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSNN 197 (376)
Q Consensus 118 ~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~ 197 (376)
++..+|+.|+++|+.+ .+.|+++.++.+.+.+.+.+.++++.|.. ++++|+.+.+..+++|+|+.+ ||.+++..
T Consensus 84 l~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~vi~~~-~G~~~~~~ 157 (417)
T 1izo_A 84 IQGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYW-AGVPLKET 157 (417)
T ss_dssp GGGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHHHHHH-HTCCCCTT
T ss_pred eeecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-cCCCCCch
Confidence 4567899999999986 58899999999999999999999998843 568999999999999999998 69877643
Q ss_pred chhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHH
Q 042142 198 DKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLL 277 (376)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll 277 (376)
+ ...+...+......... ..+ . .++..+..+.+.+++..+++++++.. .. ....|++
T Consensus 158 ~--~~~~~~~~~~~~~~~~~-----~~~--------~-~~~~~~~~~~~~~~~~~~i~~r~~~~----~~---~~~~d~l 214 (417)
T 1izo_A 158 E--VKERADDFIDMVDAFGA-----VGP--------R-HWKGRRARPRAEEWIEVMIEDARAGL----LK---TTSGTAL 214 (417)
T ss_dssp T--HHHHHHHHHHHHHHTTC-----CSH--------H-HHHHHHHHHHHHHHHHHHHHHHHTTS----SC---CCTTSHH
T ss_pred H--HHHHHHHHHHHHhhccc-----CCc--------c-chhHHHHHHHHHHHHHHHHHHHHhhc----cC---CCcCCHH
Confidence 2 22232222222211110 001 1 12234455667777777777654321 01 1245899
Q ss_pred HHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCCh
Q 042142 278 DMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLP 357 (376)
Q Consensus 278 ~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lp 357 (376)
+.++....+ ++..++++++..++..++ ||+|||+++++|++++|++||++|+|+++| ++|
T Consensus 215 ~~ll~~~~~--~g~~l~~~~~~~~~~~~~-ag~~tt~~~l~~~l~~L~~~P~~~~~l~~E-----------------~~~ 274 (417)
T 1izo_A 215 HEMAFHTQE--DGSQLDSRMAAIELINVL-RPIVAISYFLVFSALALHEHPKYKEWLRSG-----------------NSR 274 (417)
T ss_dssp HHHHHCBCT--TSCBCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHSTHHHHHHHTC-----------------CHH
T ss_pred HHHHHhccc--cCCCCCHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhCHHHHHHHHhc-----------------CCH
Confidence 999875322 233578888877776654 999999999999999999999999999997 489
Q ss_pred hHHHHHHHHhccCCCCCC
Q 042142 358 YLQALVKETLRLHPTGPM 375 (376)
Q Consensus 358 yl~avikEtlRl~p~~p~ 375 (376)
|++|||+|+||++||+|.
T Consensus 275 ~l~a~i~E~lRl~p~~~~ 292 (417)
T 1izo_A 275 EREMFVQEVRRYYPFGPF 292 (417)
T ss_dssp HHHHHHHHHHHHSCCCCE
T ss_pred HHHHHHHHHhhcCCcccc
Confidence 999999999999999984
No 34
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=100.00 E-value=2.4e-35 Score=272.66 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=205.7
Q ss_pred CCCCCCCCCCccccccccCCCchHHHHHHHHhc-CCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCCccccccc
Q 042142 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRY-GPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISATVDYL 110 (376)
Q Consensus 33 ~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~y-G~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~ 110 (376)
..||+|+++|.+..-..+..+++..+.++ ++| |||+++++ |+.++++++||+++++|+.++. |++++........
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~ 81 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPAT 81 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCCC
T ss_pred CCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCccccccccc
Confidence 45677777886543344667899999999 788 99999997 8899999999999999998653 4443321111100
Q ss_pred c-----c--CCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHH-HHH
Q 042142 111 T-----Y--GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIR-LTN 182 (376)
Q Consensus 111 ~-----~--~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~-~~~ 182 (376)
. . .. +.++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.. .+.++|+...+.. +++
T Consensus 82 ~~~~~~~~~~~-~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~ 156 (412)
T 2zbx_A 82 SPRFEAVRESP-QAFIGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLA---AGPTADLVSQFALPVPS 156 (412)
T ss_dssp SGGGC----CC-CCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHH
T ss_pred ccccccccccc-cccccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHH
Confidence 0 0 11 124456899999999997 57899999999999999999999999974 2568999988874 999
Q ss_pred HHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 183 NVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARK 262 (376)
Q Consensus 183 dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (376)
|+|+. +||.+.+. .+.+...+..+... ... ++..+..+.+.+++..+++++++
T Consensus 157 ~vi~~-~~G~~~~~----~~~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~~~~~i~~r~~--- 209 (412)
T 2zbx_A 157 MVICR-LLGVPYAD----HEFFQDASKRLVQS-----------------TDA--QSALTARNDLAGYLDGLITQFQT--- 209 (412)
T ss_dssp HHHHH-HHTCCGGG----HHHHHHHHHHHHHC-----------------SSH--HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHH-HcCCCHHH----HHHHHHHHHHHhcc-----------------CcH--HHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99997 69986542 22333333322110 001 33445556667777777766432
Q ss_pred hhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhh
Q 042142 263 INKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVV 342 (376)
Q Consensus 263 ~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~ 342 (376)
. ...|+++.+++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|++
T Consensus 210 ----~----~~~d~l~~ll~~~~~---~~~ls~~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~~--- 275 (412)
T 2zbx_A 210 ----E----PGAGLVGALVADQLA---NGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPEQYAALRADRS--- 275 (412)
T ss_dssp ----S----CCSSHHHHHHHTTTT---TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCGG---
T ss_pred ----C----CCCCHHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHhChH---
Confidence 1 135899999975321 23589999999999999999999999999999999999999999999852
Q ss_pred CCCCCCCcccCCCChhHHHHHHHHhccCCCCC
Q 042142 343 GKSRLVEESDIINLPYLQALVKETLRLHPTGP 374 (376)
Q Consensus 343 ~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p 374 (376)
|++|||+|+||++|++|
T Consensus 276 ---------------~l~a~i~E~lRl~p~~~ 292 (412)
T 2zbx_A 276 ---------------LVPGAVEELLRYLAIAD 292 (412)
T ss_dssp ---------------GHHHHHHHHHHHHCCCG
T ss_pred ---------------hHHHHHHHHHHhCCccc
Confidence 89999999999999998
No 35
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=100.00 E-value=1.4e-35 Score=274.80 Aligned_cols=284 Identities=13% Similarity=0.064 Sum_probs=205.4
Q ss_pred CCCCCCCCccccccccCCCchHHHHHHHHhc-CCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc--cccccc
Q 042142 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRY-GPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA--TVDYLT 111 (376)
Q Consensus 35 ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~y-G~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~--~~~~~~ 111 (376)
|||| |++||+..+..+|+..+.+++++| |||+++.+++.+++++++|++++ ++.++ ..|++++... .....
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~- 77 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL- 77 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT-
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc-
Confidence 5665 899999888778999999999999 79999998888999999999986 67654 3565443221 11111
Q ss_pred cCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhC
Q 042142 112 YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMG 191 (376)
Q Consensus 112 ~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg 191 (376)
.|. +.++..+|+.|+++|+.+ .+.|+++.+..+.+.+.+.++++++.|.. ++++|+.+.+..+++++|+.+ ||
T Consensus 78 ~g~-~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~----~~~vdl~~~~~~~~~~vi~~~-~G 150 (415)
T 3awm_A 78 LGQ-GGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTR----KGEIVFYDELHEPLTRAVCAW-AG 150 (415)
T ss_dssp SCS-SSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHH----HSEEEHHHHHHHHHHHHHHHH-HT
T ss_pred cCC-cceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhcc----CCcEeHHHHHHHHHHHHHHHH-cC
Confidence 121 224567899999999986 68899999999999999999999999865 357999999999999999999 89
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 042142 192 QICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDY 271 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 271 (376)
.+++.. +...+...+..... .+.. ..+ ..++..+..+.+.+++..+++++++... ..
T Consensus 151 ~~~~~~--~~~~~~~~~~~~~~---~~~~--~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~---- 207 (415)
T 3awm_A 151 VPLPDD--EAGNRAGELRALFD---AAGS--ASP---------RHLWSRLARRRVDAWAKRIIEGIRAGSI---GS---- 207 (415)
T ss_dssp CCCCGG--GHHHHHHHHHHHHH---STTC--SSH---------HHHHHHHHHHHHHHHHHHHHHHHHHTSS---CC----
T ss_pred CCCCcc--hHHHHHHHHHHHHH---Hhcc--cCc---------hHHHHHHHHHHHHHHHHHHHHHHHHhhh---cC----
Confidence 876542 22222222222211 1100 000 1123445566677777777776543210 11
Q ss_pred CcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcc
Q 042142 272 APMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEES 351 (376)
Q Consensus 272 ~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~ 351 (376)
...|+++.++....+ ++..++++++..++..++ ||+|||+++++|++++|++||++|+|+++|
T Consensus 208 ~~~d~l~~ll~~~~~--~g~~~~~~~~~~~~~~~~-ag~~tt~~~l~~~l~~L~~~P~~~~~l~~e-------------- 270 (415)
T 3awm_A 208 GSGTAAYAIAWHRDR--HDDLLSPHVAAVELVNVL-RPTVAIAVYITFVAHALQTCSGIRAALVQQ-------------- 270 (415)
T ss_dssp CTTSHHHHHHHCBCT--TSCBCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHSTTHHHHHHHC--------------
T ss_pred CCCCHHHHHHhhhhc--cCCCCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhChHHHHHHHHH--------------
Confidence 245899999875322 123588888887777655 999999999999999999999999999997
Q ss_pred cCCCChhHHHHHHHHhccCCCCCC
Q 042142 352 DIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 352 ~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+||++|||+|+||++||+|.
T Consensus 271 ----~~~l~a~i~E~lRl~p~~~~ 290 (415)
T 3awm_A 271 ----PDYAELFVQEVRRFYPFFPA 290 (415)
T ss_dssp ----TTHHHHHHHHHHHHSCCSCE
T ss_pred ----HHHHHHHHHHHhhcCCCccc
Confidence 69999999999999999984
No 36
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=100.00 E-value=5.7e-36 Score=282.17 Aligned_cols=319 Identities=12% Similarity=0.074 Sum_probs=204.3
Q ss_pred CCCCCCCCCCCCCcccccccc-----CC-CchHHHHHHHHhcCC-eEEEecCCcc-------EEEccCHHHHHHHHHh--
Q 042142 30 ITSSLPPSPMALPIIGHLHLL-----AP-IPHQALHKLSIRYGP-LIHLFLGSVP-------CIVACSPETAKEILKT-- 93 (376)
Q Consensus 30 ~~~~~ppgp~~~p~lG~~~~~-----~~-~~~~~~~~~~~~yG~-i~~~~~g~~~-------~v~i~dp~~~~~il~~-- 93 (376)
.|.+.||||.++|++|+++.+ .. +++.++.+++++||+ ||++++++.+ .|++++.+..+.++..
T Consensus 6 ~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~ 85 (473)
T 3dan_A 6 KPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSK 85 (473)
T ss_dssp SCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcc
Confidence 455678999999999998764 45 789999999999999 9999987443 3444454444344321
Q ss_pred --CCccccCCCCcccccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCce
Q 042142 94 --HETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAV 171 (376)
Q Consensus 94 --~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v 171 (376)
+...+.+... ......+......++..+|+.|+++|+.+ .+.|+++ +..+.+.+.++++++++.|.....+++++
T Consensus 86 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~v 162 (473)
T 3dan_A 86 VEKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKA 162 (473)
T ss_dssp EECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred eecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 1112222111 11122221112234556799999999997 4778774 89999999999999999998654445689
Q ss_pred ehHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 042142 172 DVGKELIRLTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMME 251 (376)
Q Consensus 172 d~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
|+.+.+..+++++++.++||.+++... ....+........... ..|++.. .++. .+............
T Consensus 163 dl~~~~~~~~~~~i~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~-------~~p~~~~-~lp~---~~~~~~~~~~~~~~ 230 (473)
T 3dan_A 163 AFNDVGEQAAFRFLGRAYFNSNPEETK-LGTSAPTLISSWVLFN-------LAPTLDL-GLPW---FLQEPLLHTFRLPA 230 (473)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCGGGST-TTTCHHHHHHHHHHHH-------HGGGCCC-SCCH---HHHHHHHSSSCCCG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchh-hhhhHHHHHHHHHHHh-------ccchhhh-cchH---HHHHHHhhhccchH
Confidence 999999999999999999998876521 1111222222111000 0111100 0000 00000000000000
Q ss_pred HHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHh-hcCCcchHHHHHHHHHHHhh-ChH
Q 042142 252 RIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIF-AAGTDTSAITVEWALAELIN-HPD 329 (376)
Q Consensus 252 ~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~-~aG~dTTa~~l~~~l~~L~~-~P~ 329 (376)
..+.+..+... +. -.|+++.+++..+ +..++++++..+++.+. ++|+|||+++++|++++|++ ||+
T Consensus 231 ~~~~~~~~~~~---~~-----~~~~~~~ll~~~~----~~~l~~~ei~~~~l~~~g~~~~~tta~~l~~~l~~L~~~~P~ 298 (473)
T 3dan_A 231 FLIKSTYNKLY---DY-----FQSVATPVMEQAE----KLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGEN 298 (473)
T ss_dssp GGTHHHHHHHH---HH-----HHHHCHHHHHHHH----HHTCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhhhchhhhH---HH-----HHHHHHHHHHhHh----hcCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCHH
Confidence 00000000000 00 0144444554321 13589999998887666 78888899999999999999 899
Q ss_pred HHHHHHHHHhhhhCC-C-CCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 330 MMKKAREEIDSVVGK-S-RLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 330 v~~~l~~Ei~~v~~~-~-~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+|+|+|+|++++++. . +.++++++++||||+|||+|+||++|++|.
T Consensus 299 ~~~~lr~Ei~~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~ 346 (473)
T 3dan_A 299 LHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPP 346 (473)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHTCHHHHHHHHHHHHHSCSSCE
T ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHhcCchHHHHHHHHHhcCCCccc
Confidence 999999999999764 3 578999999999999999999999999975
No 37
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=100.00 E-value=1.9e-35 Score=273.17 Aligned_cols=281 Identities=12% Similarity=0.120 Sum_probs=207.2
Q ss_pred cCCCCCCCCCCCCCCcc--ccccc-----cCCCchHHHHHHHHhcC--CeEEEe-cCCccEEEccCHHHHHHHHHhCCcc
Q 042142 28 SKITSSLPPSPMALPII--GHLHL-----LAPIPHQALHKLSIRYG--PLIHLF-LGSVPCIVACSPETAKEILKTHETS 97 (376)
Q Consensus 28 ~~~~~~~ppgp~~~p~l--G~~~~-----~~~~~~~~~~~~~~~yG--~i~~~~-~g~~~~v~i~dp~~~~~il~~~~~~ 97 (376)
..++.++||||.+.|.. +.+-. +..+++..+.+++ +|| ||+++. +| +.++++||+++++++.+ ...
T Consensus 6 ~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~ 81 (415)
T 2zwu_A 6 IQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRH 81 (415)
T ss_dssp -----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTT
T ss_pred ccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-ccc
Confidence 45667899999999864 54321 2346788898995 799 999998 55 68999999999999975 446
Q ss_pred ccCCC-CcccccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH
Q 042142 98 FCDRP-ISATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE 176 (376)
Q Consensus 98 f~~~~-~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~ 176 (376)
|++++ ...... ...+ .+.++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+... +++|+...
T Consensus 82 f~~~~~~~~~~~-~~~~-~~~l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~ 154 (415)
T 2zwu_A 82 FSSECPFIPREA-GEAY-DFIPTSMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRPQ----GQCNFTED 154 (415)
T ss_dssp EETTSCSSSHHH-HHHC-CCTTTTCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGGG----TEEEHHHH
T ss_pred cCCCcccCCCCc-cccc-cccCccCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHH
Confidence 77765 221111 1112 1203455799999999997 578999999999999999999999998652 37999976
Q ss_pred H-HHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 042142 177 L-IRLTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIK 255 (376)
Q Consensus 177 ~-~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (376)
+ ..+++|+|+.+ ||.+++. ...+......+... . .|. +..+..+.+.+++..+++
T Consensus 155 ~~~~~~~~vi~~~-~G~~~~~----~~~~~~~~~~~~~~---~-----~P~-----------~~~~~~~~~~~~~~~~i~ 210 (415)
T 2zwu_A 155 YAEPFPIRIFMLL-AGLPEED----IPHLKYLTDQMTRP---D-----GSM-----------TFAEAKEALYDYLIPIIE 210 (415)
T ss_dssp TTTHHHHHHHHHH-HTCCGGG----HHHHHHHHHHHHSC---C-----SSS-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHH----HHHHHHHHHHHHhc---c-----CHH-----------HHHHHHHHHHHHHHHHHH
Confidence 5 78999999999 9987652 23344443333211 0 011 233445566677777776
Q ss_pred HHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHH
Q 042142 256 EHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAR 335 (376)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~ 335 (376)
++++ . ...|+++.+++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|++
T Consensus 211 ~r~~-------~----~~~dll~~ll~~~~~---~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~ 276 (415)
T 2zwu_A 211 QRRQ-------K----PGTDAISIVANGQVN---GRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELI 276 (415)
T ss_dssp HHHH-------S----CCSSHHHHHHTCEET---TEECCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHh-------C----CCCCHHHHHHHhhhc---CCCCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 6543 1 135999999975322 2358999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 336 EEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 336 ~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+|++ |++|||+|+||++|++|.
T Consensus 277 ~E~~------------------~l~a~i~E~lRl~p~~~~ 298 (415)
T 2zwu_A 277 ERPE------------------RIPAACEELLRRFSLVAD 298 (415)
T ss_dssp HCGG------------------GHHHHHHHHHHHTCCBCC
T ss_pred hCHH------------------HHHHHHHHHHhhcCCcCC
Confidence 9963 899999999999999984
No 38
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=100.00 E-value=8.3e-35 Score=266.78 Aligned_cols=263 Identities=13% Similarity=0.149 Sum_probs=200.9
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEecCC----ccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCCh
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFLGS----VPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGP 124 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~g~----~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~ 124 (376)
.+..+|+..+.++. +||||+++++|+ .++++++||+++++++++ ...|++++..........+ .+.++..+|+
T Consensus 9 ~~~~~p~~~~~~lr-~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~ 85 (384)
T 3oo3_A 9 RLRLDPVPEFEELQ-KAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILAD-HERFSSMRPVDDEADRALL-PGILQAYDPP 85 (384)
T ss_dssp EETTEECHHHHHHH-HTCSEECCCCC------CEEEECCHHHHHHHHHC-TTTEECSCCCC-----CCC-TTCGGGCCTT
T ss_pred ccccChhHHHHHHH-hcCCeeecccccccCCCCEEEEcCHHHHHHHHhC-chhccCCcccccccccccc-ccccccCCCh
Confidence 34678999999995 999999999886 899999999999999954 4678776644322111111 2334567899
Q ss_pred hHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhCcccCCCchhHHHH
Q 042142 125 YWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSNNDKEADEV 204 (376)
Q Consensus 125 ~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~ 204 (376)
.|+++|+.+ .+.|+.+.++.+.+.+.++++++++.+.+ .++++|+...+...+.+++...+||.+.+. ...+
T Consensus 86 ~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~----~~~~ 157 (384)
T 3oo3_A 86 DHTRLRRTV-APAYSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAAWPIPAYIACEFLGVPRDD----QAEL 157 (384)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTTTHHHHHHHHHHHTCCGGG----HHHH
T ss_pred hHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHHHcCCCHHH----HHHH
Confidence 999999997 58899999999999999999999999965 356899999999888777777889986542 2334
Q ss_pred HHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhccc
Q 042142 205 RKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDIS 284 (376)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~ 284 (376)
...+..... ....+...+..+.+.+++...++++++ . ...|+++.+++..
T Consensus 158 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~----~~~d~l~~ll~~~ 207 (384)
T 3oo3_A 158 SRMIRESRE-------------------SRLPRQRTLSGLGIVNYTKRLTSGKRR-------D----PGDGMIGVIVREH 207 (384)
T ss_dssp HHHHHHHHH-------------------CSCHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHHH
T ss_pred HHHHHHHhc-------------------cCChHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHHhc
Confidence 333333321 011123445556667777777765432 1 2359999999751
Q ss_pred ccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHH
Q 042142 285 EDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVK 364 (376)
Q Consensus 285 ~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avik 364 (376)
+..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|++. ++|||+
T Consensus 208 -----~~~l~~~~l~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~~l~~E~~~------------------l~a~i~ 264 (384)
T 3oo3_A 208 -----GAEISDEELAGLAEGNLIMAAEQMAAQLAVAVLLLVTHPDQMALLREKPEL------------------IDSATE 264 (384)
T ss_dssp -----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCGGG------------------HHHHHH
T ss_pred -----CCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCHHHHHHHHhCHHH------------------HHHHHH
Confidence 235899999999999999999999999999999999999999999999875 999999
Q ss_pred HHhccCCCCCC
Q 042142 365 ETLRLHPTGPM 375 (376)
Q Consensus 365 EtlRl~p~~p~ 375 (376)
|+||++|++|.
T Consensus 265 E~lRl~p~~~~ 275 (384)
T 3oo3_A 265 EVLRHASIVEA 275 (384)
T ss_dssp HHHHHHCSCSC
T ss_pred HHHHhCCcccC
Confidence 99999999974
No 39
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=100.00 E-value=4.3e-35 Score=270.93 Aligned_cols=280 Identities=16% Similarity=0.209 Sum_probs=198.8
Q ss_pred HHHhcCCCCCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCC
Q 042142 24 IFRRSKITSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI 103 (376)
Q Consensus 24 ~~~~~~~~~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~ 103 (376)
++|+...+.+.+|||+. ..+++..+.++++ |||| +.++.+.++++||+++++++.++ ..|++++.
T Consensus 10 iyr~~~~pl~~~PGp~~----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~ 74 (411)
T 2jjn_A 10 CARRTLTTIDEVPGMAD----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPT 74 (411)
T ss_dssp -------CCCSCCCSSC----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGG
T ss_pred hhhcccCCCCCCCCccc----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccc
Confidence 45555566666777771 1467888889986 9998 56767899999999999999865 46776653
Q ss_pred cccccccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHH
Q 042142 104 SATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTN 182 (376)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~ 182 (376)
... .....+..+ ++..+|+.|+++|+.+ .+.|+.+.++.+.+.+.++++++++. .++++|+... ...+++
T Consensus 75 ~~~-~~~~~~~~~-~~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~------~~~~~d~~~~~~~~~~~ 145 (411)
T 2jjn_A 75 RVI-EGASPTPGM-IHEIDPPEHRALRKVV-SSAFTPRTISDLEPRIRDVTRSLLAD------AGESFDLVDVLAFPLPV 145 (411)
T ss_dssp GGS-TTCCCCTTC-GGGCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHT------SCSEEEHHHHTTTHHHH
T ss_pred ccC-Ccccccccc-cccCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHhc------CCCceeHHHHHHHHHHH
Confidence 221 111111122 4456799999999997 57899999999999999999988887 2357999855 468999
Q ss_pred HHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 183 NVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARK 262 (376)
Q Consensus 183 dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (376)
|+|+.+ ||.+.+..+. +......+.... ... +. .+...++..+..+.+.+++...++++++
T Consensus 146 ~vi~~~-fG~~~~~~~~----~~~~~~~~~~~~----~~~---~~----~p~~~~~~~~~~~~~~~~~~~~i~~r~~--- 206 (411)
T 2jjn_A 146 TIVAEL-LGLPPMDHEQ----FGDWSGALVDIQ----MDD---PT----DPALAERIADVLNPLTAYLKARCAERRA--- 206 (411)
T ss_dssp HHHHHH-HTCCSCCCST----TCCHHHHHHHSC----CSC---TT----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHH-cCCCHHHHHH----HHHHHHHHHhcc----Ccc---cc----chHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999998 9987654321 112222222111 000 10 0112233445566667777777766532
Q ss_pred hhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhh
Q 042142 263 INKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVV 342 (376)
Q Consensus 263 ~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~ 342 (376)
+ ...|+++.+++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++
T Consensus 207 ----~----~~~d~l~~ll~~~~~---~~~l~~~el~~~~~~~~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E~~--- 272 (411)
T 2jjn_A 207 ----D----PGDDLISRLVLAEVD---GRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAEDPG--- 272 (411)
T ss_dssp ----S----CCSSHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHCGG---
T ss_pred ----C----CCCCHHHHHHhcccC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhCHH---
Confidence 1 135999999975321 23589999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 343 GKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 343 ~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
|++|||+|+||++|++|.
T Consensus 273 ---------------~l~a~i~E~lRl~p~~~~ 290 (411)
T 2jjn_A 273 ---------------RIPAIVEEVLRYRPPFPQ 290 (411)
T ss_dssp ---------------GHHHHHHHHHHHSCSSCE
T ss_pred ---------------hHHHHHHHHhhhCCCcCC
Confidence 899999999999999874
No 40
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=100.00 E-value=3e-34 Score=264.48 Aligned_cols=263 Identities=14% Similarity=0.192 Sum_probs=198.2
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCC--c-cccccccc--CCceeEeccC
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI--S-ATVDYLTY--GSADFSFAPY 122 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~--~-~~~~~~~~--~~~~~~~~~~ 122 (376)
.+..+++..+.++ ++||||+++++ |+.+.++++||+++++++.++ .|.+++. . ........ +..+ ++..+
T Consensus 16 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 91 (403)
T 3aba_A 16 SCPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGS-LLWQD 91 (403)
T ss_dssp SSTTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTC-CTTCC
T ss_pred ccccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccc-cccCC
Confidence 3557888899999 89999999997 889999999999999999874 3665532 1 11100111 1223 44568
Q ss_pred ChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhH
Q 042142 123 GPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEA 201 (376)
Q Consensus 123 g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~ 201 (376)
|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.+ .++++|+...+ ..+++|+|+. +||.+.+. .
T Consensus 92 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~ 162 (403)
T 3aba_A 92 EPEHTSDRKLL-AKEFTVRRMQALRPNIQRIVDEHLDAIEA---RGGPVDLVKTFANAVPSMVISD-LFGVPVER----R 162 (403)
T ss_dssp TTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH-HHTCCGGG----H
T ss_pred chhHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHHH----H
Confidence 99999999997 57899999999999999999999999975 25679998766 4799999998 69986542 2
Q ss_pred HHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHh
Q 042142 202 DEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLL 281 (376)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll 281 (376)
..+......+.. . .. . .++..+..+.+.+++...++++++ . ...|+++.++
T Consensus 163 ~~~~~~~~~~~~----~--~~---------~---p~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll~~ll 213 (403)
T 3aba_A 163 AEFQDIAEAMMR----V--DQ---------D---AAATEAAGMRLGGLLYQLVQERRA-------N----PGDDLISALI 213 (403)
T ss_dssp HHHHHHHHHHSB----S--SS---------C---HHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHH
T ss_pred HHHHHHHHHHHh----c--cC---------c---HHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHH
Confidence 233333222211 0 00 0 133445556677777777766532 1 1358999999
Q ss_pred cccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHH
Q 042142 282 DISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQA 361 (376)
Q Consensus 282 ~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~a 361 (376)
+... ++..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ .|++|
T Consensus 214 ~~~~---~~~~l~~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~------------------~~l~a 272 (403)
T 3aba_A 214 TTED---PDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLREDP------------------SLVGN 272 (403)
T ss_dssp TSCC---TTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCG------------------GGHHH
T ss_pred hhcc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHhCH------------------HHHHH
Confidence 7632 12358999999999999999999999999999999999999999999985 28999
Q ss_pred HHHHHhccCCCCC
Q 042142 362 LVKETLRLHPTGP 374 (376)
Q Consensus 362 vikEtlRl~p~~p 374 (376)
||+|+||++|++|
T Consensus 273 ~i~E~lRl~p~~~ 285 (403)
T 3aba_A 273 AVEELLRYLTIGQ 285 (403)
T ss_dssp HHHHHHHHHCSCT
T ss_pred HHHHHHhcCCCcc
Confidence 9999999999998
No 41
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=100.00 E-value=9.4e-35 Score=268.14 Aligned_cols=275 Identities=12% Similarity=0.139 Sum_probs=202.4
Q ss_pred CCCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEec-CCcc-EEEccCHHHHHHHHHhCCccccCCCCccccc-
Q 042142 32 SSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL-GSVP-CIVACSPETAKEILKTHETSFCDRPISATVD- 108 (376)
Q Consensus 32 ~~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~-~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~- 108 (376)
++.+|+|+++|+.++ ...+|+..+.+++ +||||+++.+ |+.+ .++++||+++++|+.+ ..|.+++......
T Consensus 7 ~~~~~~~~~~p~~~~---~~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDL---PGSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp -CCSCCEEECCCCCC---CTTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhhccCCCCCCCCcc---cccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 456778888888776 4578899998886 7999999996 5666 9999999999999986 3576654321111
Q ss_pred ---c-cccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHH
Q 042142 109 ---Y-LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNN 183 (376)
Q Consensus 109 ---~-~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~d 183 (376)
. ......+ ++..+|+.|+++||.+. +.|+.+.++.+.+.+.++++++++.+.+ .++++|+...+ ..+++|
T Consensus 81 ~~~~~~~~~~~~-l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~ 155 (406)
T 1s1f_A 81 RLAPHFIPARGA-VGFLDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLR---AGPPADLTEAVLSPFPIA 155 (406)
T ss_dssp BSSSSCSSCTTS-GGGCCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTHHHHH
T ss_pred cccccccccccc-cccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHhhHhHHH
Confidence 1 1111123 34567999999999974 7789999999999999999999999974 24589998766 479999
Q ss_pred HHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042142 184 VVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKI 263 (376)
Q Consensus 184 vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (376)
+|+. +||.+++. ...+......+..... + . ++..+..+.+.+++..+++++++
T Consensus 156 vi~~-~~G~~~~~----~~~~~~~~~~~~~~~~--------~------~----~~~~~~~~~~~~~~~~~i~~r~~---- 208 (406)
T 1s1f_A 156 VICE-LMGVPATD----RHSMHTWTQLILSSSH--------G------A----EVSERAKNEMNAYFSDLIGLRSD---- 208 (406)
T ss_dssp HHHH-HHTCCGGG----HHHHHHHHHHHHHHHT--------T------C----CCCHHHHTHHHHHHHHHHHTSCC----
T ss_pred HHHH-HhCCCHHH----HHHHHHHHHHHHhccC--------C------H----HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 9998 59987642 2233333333221110 0 0 11233344555666665554311
Q ss_pred hhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhC
Q 042142 264 NKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVG 343 (376)
Q Consensus 264 ~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~ 343 (376)
. ...|+++.+++...+ ..++++++.+++.++++|| |||+++++|++++|++||++|+|+++|++
T Consensus 209 ---~----~~~d~l~~ll~~~~~----~~ls~~el~~~~~~l~~AG-eTt~~~l~~~l~~L~~~P~~~~~l~~E~~---- 272 (406)
T 1s1f_A 209 ---S----AGEDVTSLLGAAVGR----DEITLSEAVGLAVLLQIGG-EAVTNNSGQMFHLLLSRPELAERLRSEPE---- 272 (406)
T ss_dssp ---S----CCCSHHHHHHHHHHT----TSSCHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSHHHHHHHHHCGG----
T ss_pred ---C----CCCCHHHHHHHhhcc----cCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHCHHHHHHHHhCHH----
Confidence 1 235999999975321 3589999999999999999 99999999999999999999999999963
Q ss_pred CCCCCCcccCCCChhHHHHHHHHhccCCCCC
Q 042142 344 KSRLVEESDIINLPYLQALVKETLRLHPTGP 374 (376)
Q Consensus 344 ~~~~~~~~~l~~lpyl~avikEtlRl~p~~p 374 (376)
|++|||+|+||++|++|
T Consensus 273 --------------~l~a~i~E~lRl~p~~~ 289 (406)
T 1s1f_A 273 --------------IRPRAIDELLRWIPHRN 289 (406)
T ss_dssp --------------GHHHHHHHHHHHSCCBS
T ss_pred --------------HHHHHHHHHHhhCCCcc
Confidence 79999999999999998
No 42
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=100.00 E-value=1.2e-34 Score=267.70 Aligned_cols=269 Identities=19% Similarity=0.286 Sum_probs=197.5
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCC--ccc---cc----ccc-cCCceeE
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI--SAT---VD----YLT-YGSADFS 118 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~--~~~---~~----~~~-~~~~~~~ 118 (376)
.+..+++..+.++ ++||||+++++++.++++++||+++++|+.++. +++++. ... .. ... .+..+ +
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 87 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVEN-M 87 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCS-G
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccc-c
Confidence 3557889999999 999999999988889999999999999998653 333321 110 00 000 01112 4
Q ss_pred eccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHH-HHHHHHHHHHHhCcccCCC
Q 042142 119 FAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSNN 197 (376)
Q Consensus 119 ~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~-~~~~dvi~~~~fg~~~~~~ 197 (376)
+..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.+. ..++++|+...+. .+++|+|+. +||.+.+
T Consensus 88 ~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-- 162 (408)
T 1odo_A 88 FTAYGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAEL-PAGEPVDLRQELAYPLPIAVIGH-LMGVPQD-- 162 (408)
T ss_dssp GGCCHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHS-CTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH--
T ss_pred cccCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcchHHHHhhhhHHHHHHH-HhCCCHH--
Confidence 567899999999997 588999999999999999999999999753 2356899998887 599999996 7997543
Q ss_pred chhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHH
Q 042142 198 DKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLL 277 (376)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll 277 (376)
....+......+.. .. . ..++..+..+.+.+++..+++++++ . ...|++
T Consensus 163 --~~~~~~~~~~~~~~----~~----~----------~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~d~l 211 (408)
T 1odo_A 163 --RRDGFRALVDGVFD----TT----L----------DQAEAQANTARLYEVLDQLIAAKRA-------T----PGDDMT 211 (408)
T ss_dssp --HHHHHHHHHHHHHC----TT----C----------CHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHH
T ss_pred --HHHHHHHHHHHHhc----cc----C----------CHHHHHHHHHHHHHHHHHHHHHHhh-------C----CCCCHH
Confidence 12233333333211 00 0 0123445556667777777766532 1 135899
Q ss_pred HHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCCh
Q 042142 278 DMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLP 357 (376)
Q Consensus 278 ~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lp 357 (376)
+.+++...++.++..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+ +
T Consensus 212 ~~ll~~~~~~~~~~~l~~~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~------------------~ 273 (408)
T 1odo_A 212 SLLIAARDDEGDGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKGE------------------V 273 (408)
T ss_dssp HHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHTS------------------S
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCHHHHHHHHhCH------------------H
Confidence 9999753221012358999999999999999999999999999999999999999999973 3
Q ss_pred hHHHHHHHHhccCCCCCC
Q 042142 358 YLQALVKETLRLHPTGPM 375 (376)
Q Consensus 358 yl~avikEtlRl~p~~p~ 375 (376)
|++|||+|+||++||+|.
T Consensus 274 ~l~a~i~E~lRl~p~~~~ 291 (408)
T 1odo_A 274 TWADVVEETLRHEPAVKH 291 (408)
T ss_dssp CHHHHHHHHHHHSCSBSC
T ss_pred HHHHHHHHHHhhCCCccC
Confidence 799999999999999984
No 43
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=100.00 E-value=6.7e-34 Score=263.41 Aligned_cols=265 Identities=14% Similarity=0.151 Sum_probs=200.9
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHhCCccccCCCCccccccccc------CCceeEecc
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTY------GSADFSFAP 121 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~------~~~~~~~~~ 121 (376)
.+..+|+..+.+++++ |||++++++ |.++++++||+++++++.++ .|++++.......... .....++..
T Consensus 26 ~~~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (417)
T 3tyw_A 26 GCPFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRT 102 (417)
T ss_dssp SSTTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGC
T ss_pred ccccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhc
Confidence 3567899999999988 999999986 58999999999999999975 5665432111111000 011234567
Q ss_pred CChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchh
Q 042142 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKE 200 (376)
Q Consensus 122 ~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~ 200 (376)
+|+.|+++||.+ .+.|+.+.++.+.+.+.+++.++++.+.+ .++++|+...+ ..+++++|+.+ ||.+++..+
T Consensus 103 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~~-- 175 (417)
T 3tyw_A 103 DAPEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLA---AGGPVDLVSAYANAVSTSVICEL-LGIPRHDLE-- 175 (417)
T ss_dssp CHHHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTHHHHHHHHHHHH-HTCCTTTTT--
T ss_pred CCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHHHHHHHH-hCCCHHHHH--
Confidence 899999999997 58899999999999999999999999976 35679999987 58999999997 998776432
Q ss_pred HHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHH
Q 042142 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDML 280 (376)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~l 280 (376)
.+......+... . ...+...+..+.+.+++..+++++++ + ...|+++.+
T Consensus 176 --~~~~~~~~~~~~---~---------------~~~~~~~~~~~~l~~~~~~~i~~r~~-------~----~~~d~l~~l 224 (417)
T 3tyw_A 176 --FFRDVTRISGSR---N---------------STAEQVSEALGGLFGLLGGLVAERRE-------E----PRDDLISKL 224 (417)
T ss_dssp --HHHHHHHHHHSS---S---------------SCTTHHHHHHHHHHHHHHHHHHHHHS-------S----CCSSHHHHH
T ss_pred --HHHHHHHHHhcc---c---------------CCHHHHHHHHHHHHHHHHHHHHHHhh-------C----CCCCHHHHH
Confidence 222222222110 0 01123445556667777777765432 1 236999999
Q ss_pred hcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHH
Q 042142 281 LDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQ 360 (376)
Q Consensus 281 l~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~ 360 (376)
+....+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|++ |++
T Consensus 225 l~~~~~---~~~ls~~el~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~ 283 (417)
T 3tyw_A 225 VTDHLV---PGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRPELPAELRKDPD------------------LMP 283 (417)
T ss_dssp HHHTTT---TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHCGG------------------GHH
T ss_pred HHhccc---CCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCHHHHHHHHhChH------------------HHH
Confidence 976432 23589999999999999999999999999999999999999999999954 799
Q ss_pred HHHHHHhccCCCCCC
Q 042142 361 ALVKETLRLHPTGPM 375 (376)
Q Consensus 361 avikEtlRl~p~~p~ 375 (376)
|||+|+||++|++|.
T Consensus 284 a~i~E~lRl~p~~~~ 298 (417)
T 3tyw_A 284 AAVDELLRVLSVADS 298 (417)
T ss_dssp HHHHHHHHHHCSCTT
T ss_pred HHHHHHHHhcccccc
Confidence 999999999999985
No 44
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=100.00 E-value=1.2e-34 Score=267.56 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=194.0
Q ss_pred cccCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCCcccccc---cccC---CceeEec
Q 042142 48 HLLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISATVDY---LTYG---SADFSFA 120 (376)
Q Consensus 48 ~~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~---~~~~---~~~~~~~ 120 (376)
..+..+++..+.++ ++||||+++++ |+.++++++||+++++|+.++. |.+++....... ...+ ..+.++.
T Consensus 20 ~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (408)
T 3abb_A 20 RTCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPLIG 96 (408)
T ss_dssp CSSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTTTT
T ss_pred cccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccccc
Confidence 34567899999999 89999999997 8899999999999999998643 443332010000 1100 0112445
Q ss_pred cCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHH-HHHHHHHHHHHhCcccCCCch
Q 042142 121 PYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSNNDK 199 (376)
Q Consensus 121 ~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~-~~~~dvi~~~~fg~~~~~~~~ 199 (376)
.+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.. .+.++|+...+. .+++|+|+. +||.+.+.
T Consensus 97 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--- 168 (408)
T 3abb_A 97 VDDPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAFALPVPSVAICE-LLGVPYGD--- 168 (408)
T ss_dssp CCTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHTTTHHHHHHHHH-HHTCCGGG---
T ss_pred CCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHHH---
Confidence 6899999999997 57899999999999999999999999974 356899998876 499999997 69986542
Q ss_pred hHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHH
Q 042142 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDM 279 (376)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ 279 (376)
.+.+......+.. .. .+ +...+..+.+.+++..+++++++ . ...|+++.
T Consensus 169 -~~~~~~~~~~~~~------~~--~~-----------~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~d~l~~ 217 (408)
T 3abb_A 169 -HDFFEECSRNFVG------AA--TS-----------AEADAAFGELYTYLHGLVGRKQA-------E----PEDGLLDE 217 (408)
T ss_dssp -HHHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHH-------S----CCSSHHHH
T ss_pred -HHHHHHHHHHHhc------cc--ch-----------HHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHH
Confidence 2233333332211 00 00 11122344556666666665432 1 12589999
Q ss_pred HhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhH
Q 042142 280 LLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYL 359 (376)
Q Consensus 280 ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl 359 (376)
+++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |+
T Consensus 218 ll~~~~~---~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~~------------------~l 276 (408)
T 3abb_A 218 LIARQLE---EGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHPEQIDVLLRDPG------------------AV 276 (408)
T ss_dssp HHHHHHT---SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGGGGGSCHH------------------HH
T ss_pred HHhcccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCHH------------------hH
Confidence 9875322 23589999999999999999999999999999999999999999999753 79
Q ss_pred HHHHHHHhccCCCCC
Q 042142 360 QALVKETLRLHPTGP 374 (376)
Q Consensus 360 ~avikEtlRl~p~~p 374 (376)
+|||+|+||++|++|
T Consensus 277 ~a~i~E~lRl~p~~~ 291 (408)
T 3abb_A 277 SGVVEELLRFTSVSD 291 (408)
T ss_dssp HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999999997
No 45
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=100.00 E-value=1.3e-33 Score=260.74 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=197.5
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccc-----cccccCCceeEeccCC
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATV-----DYLTYGSADFSFAPYG 123 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~~~~g 123 (376)
.+..+|+..+.++ ++||||+++++|+.+.++++||+++++++.++. |++++..... ........+ ++..+|
T Consensus 17 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g 92 (411)
T 3a4g_A 17 TFWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPM-MILMDP 92 (411)
T ss_dssp GGTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCC-GGGCCT
T ss_pred hhhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccc-cccCCc
Confidence 3557889999999 899999999999899999999999999998753 7665432111 111111223 345689
Q ss_pred hhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHHHHHHHHHhCcccCCCchhHH
Q 042142 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQICSNNDKEAD 202 (376)
Q Consensus 124 ~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~dvi~~~~fg~~~~~~~~~~~ 202 (376)
+.|+++||.+ .+.|+++.++.+.+.+.+++.++++.+.+ ++++|+... ...+++|+|+.+ ||.+.+. ..
T Consensus 93 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~----~~ 162 (411)
T 3a4g_A 93 PDHTRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQVICEL-LGVPAED----RD 162 (411)
T ss_dssp THHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHHHHHHH-HTCCGGG----HH
T ss_pred hHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHHH-hCCCHHH----HH
Confidence 9999999997 57899999999999999999999998853 357999755 468999999975 9986642 22
Q ss_pred HHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhc
Q 042142 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLD 282 (376)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~ 282 (376)
.+......+... .| + ++..+..+.+.+++..+++++++ . ...|+++.+++
T Consensus 163 ~~~~~~~~~~~~---------~p-------~---~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~d~l~~ll~ 212 (411)
T 3a4g_A 163 DFSAWSSVLVDD---------SP-------A---DDKNAAMGKLHGYLSDLLERKRT-------E----PDDALLSSLLA 212 (411)
T ss_dssp HHHHHHHHHTTS---------SC-------T---TTHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHH
T ss_pred HHHHHHHHHhcc---------CC-------H---HHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHH
Confidence 333333222110 01 0 12344455667777777766532 1 13599999997
Q ss_pred ccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHH
Q 042142 283 ISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQAL 362 (376)
Q Consensus 283 ~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~av 362 (376)
...+ ++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++||
T Consensus 213 ~~~~--~~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~ 272 (411)
T 3a4g_A 213 VSDE--DGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPS------------------LISSA 272 (411)
T ss_dssp CCCT--TCCCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHCGG------------------GHHHH
T ss_pred hhcc--CCCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhCHHHHHHHhcCHH------------------HHHHH
Confidence 5321 123589999999999999999999999999999999999999999999852 89999
Q ss_pred HHHHhccCCCCC
Q 042142 363 VKETLRLHPTGP 374 (376)
Q Consensus 363 ikEtlRl~p~~p 374 (376)
|+|+||++||+|
T Consensus 273 i~E~lRl~p~~~ 284 (411)
T 3a4g_A 273 VEEFLRFDSPVS 284 (411)
T ss_dssp HHHHHHHTCSBC
T ss_pred HHHHHHhccccc
Confidence 999999999998
No 46
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=100.00 E-value=1.2e-33 Score=262.67 Aligned_cols=270 Identities=13% Similarity=0.123 Sum_probs=202.8
Q ss_pred CCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHhCCccccCCCCc--c-cccccccCCceeEecc
Q 042142 52 PIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKTHETSFCDRPIS--A-TVDYLTYGSADFSFAP 121 (376)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~~~~~f~~~~~~--~-~~~~~~~~~~~~~~~~ 121 (376)
.+++..+.++. +||||+++.++ +.+.++++||+++++++.++ ..|++++.. . ....+.....+ ++..
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-l~~~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGS-MIVL 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHG-GGGC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccc-cccC
Confidence 46788888886 69999999986 67899999999999999975 467776532 1 11111100122 3455
Q ss_pred CChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchh
Q 042142 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKE 200 (376)
Q Consensus 122 ~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~ 200 (376)
+|+.|+++|+.+ .+.|+++.++.+.+.+.+++.++++.+.+. .++.++|+...+ ..+++|+|+.+ ||.+++.
T Consensus 121 dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~---- 193 (435)
T 2wm5_A 121 DDPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIAN-NPDRQADLVSELAGPLPLQIICDM-MGIPKAD---- 193 (435)
T ss_dssp CTTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEHHHHTTTHHHHHHHHHH-HTCCGGG----
T ss_pred CcHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcEehHHHHHHHHHHHHHHHH-cCCCHHH----
Confidence 799999999997 578999999999999999999999999764 234589998766 78999999999 9987652
Q ss_pred HHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHH
Q 042142 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDML 280 (376)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~l 280 (376)
...+......+..... |.+ . ...++..+..+.+.+++..+++++++ . ...|+++.|
T Consensus 194 ~~~~~~~~~~~~~~~~--------p~~----~-~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll~~l 249 (435)
T 2wm5_A 194 HQRIFHWTNVILGFGD--------PDL----A-TDFDEFMQVSADIGAYATALAEDRRV-------N----HHDDLTSSL 249 (435)
T ss_dssp HHHHHHHHHHHHHTTC--------TTS----C-CCHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHH
T ss_pred HHHHHHHHHHHhccCC--------cch----h-hhHHHHHHHHHHHHHHHHHHHHHHhc-------C----CCCCHHHHH
Confidence 2334444443322110 111 0 11134455566677777777766543 1 135999999
Q ss_pred hcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHH
Q 042142 281 LDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQ 360 (376)
Q Consensus 281 l~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~ 360 (376)
++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|++ +|++
T Consensus 250 l~~~~~---~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~-----------------~~l~ 309 (435)
T 2wm5_A 250 VEAEVD---GERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDFD-----------------GLAP 309 (435)
T ss_dssp HHCCBT---TBCCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHSHH-----------------HHHH
T ss_pred Hhhhcc---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCHHHHHHHhChH-----------------hHHH
Confidence 975322 23589999999999999999999999999999999999999999999986 4899
Q ss_pred HHHHHHhccCCCCCC
Q 042142 361 ALVKETLRLHPTGPM 375 (376)
Q Consensus 361 avikEtlRl~p~~p~ 375 (376)
|||+|+||++|++|.
T Consensus 310 a~i~E~lRl~p~~~~ 324 (435)
T 2wm5_A 310 TAVEEIVRWASPVVY 324 (435)
T ss_dssp HHHHHHHHHHCSBCC
T ss_pred HHHHHHHhhcCcccC
Confidence 999999999999984
No 47
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=100.00 E-value=1.1e-33 Score=261.53 Aligned_cols=264 Identities=12% Similarity=0.187 Sum_probs=196.8
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCCc-cccccccc--CCceeEeccCCh
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPIS-ATVDYLTY--GSADFSFAPYGP 124 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~-~~~~~~~~--~~~~~~~~~~g~ 124 (376)
.+..+|+..+.++ ++||||+++++ |+.+.++++||+++++|+.++ .|.+++.. .....+.. +..+ ++..+|+
T Consensus 34 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~-l~~~dg~ 109 (417)
T 2y5n_A 34 VHGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGG-LLSMDPP 109 (417)
T ss_dssp SSSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCS-GGGCCTT
T ss_pred hhccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCccccccc-CccCCch
Confidence 3557889999999 89999999997 889999999999999999864 36554322 11111111 1223 3556899
Q ss_pred hHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHH-HHHHHHHHHHHhCcccCCCchhHHH
Q 042142 125 YWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSNNDKEADE 203 (376)
Q Consensus 125 ~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~-~~~~dvi~~~~fg~~~~~~~~~~~~ 203 (376)
.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.. ++.++|+...+. .+++|+|+. +||.+.+. .+.
T Consensus 110 ~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~----~~~ 180 (417)
T 2y5n_A 110 EHSRLRRLV-VKAFTARRAESLRPRAREIAHELVDQMAA---TGQPADLVAMFARQLPVRVICE-LLGVPSAD----HDR 180 (417)
T ss_dssp HHHHHHHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGG----HHH
T ss_pred HHHHHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeeHHHHHHHHhHHHHHHH-HcCCCHHH----HHH
Confidence 999999997 57899999999999999999999999974 122799987764 699999998 69986542 222
Q ss_pred HHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcc
Q 042142 204 VRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDI 283 (376)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~ 283 (376)
+......+. . ... .+ .++..+..+.+.+++..+++++++ . ...|+++.+++.
T Consensus 181 ~~~~~~~~~----~--~~~---------~~--~~~~~~~~~~l~~~~~~~i~~r~~-------~----~~~dll~~ll~~ 232 (417)
T 2y5n_A 181 FTRWSGAFL----S--TAE---------VT--AEEMQEAAEQAYAYMGDLIDRRRK-------E----PTDDLVSALVQA 232 (417)
T ss_dssp HHHHHHTTS----T--TCC---------CC--HHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHC
T ss_pred HHHHHHHHh----c--ccC---------CC--HHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHhh
Confidence 322222110 0 000 00 133445556667777777766532 1 135999999975
Q ss_pred cccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHH
Q 042142 284 SEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALV 363 (376)
Q Consensus 284 ~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avi 363 (376)
.. ++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||
T Consensus 233 ~~---~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i 291 (417)
T 2y5n_A 233 RD---QQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRPELRRQLLDRPE------------------LIPSAV 291 (417)
T ss_dssp CB---TTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCGG------------------GHHHHH
T ss_pred hc---cCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCHHHHHHHHhCHH------------------HHHHHH
Confidence 32 123589999999999999999999999999999999999999999999852 899999
Q ss_pred HHHhccCCCCC
Q 042142 364 KETLRLHPTGP 374 (376)
Q Consensus 364 kEtlRl~p~~p 374 (376)
+|+||++|++|
T Consensus 292 ~E~lRl~p~~~ 302 (417)
T 2y5n_A 292 EELTRWVPLGV 302 (417)
T ss_dssp HHHHHHCCCBS
T ss_pred HHHHHhcCCcc
Confidence 99999999998
No 48
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=100.00 E-value=4.9e-34 Score=262.79 Aligned_cols=262 Identities=11% Similarity=0.096 Sum_probs=197.7
Q ss_pred ccCCCchHHHHHHHHhc--CCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhH
Q 042142 49 LLAPIPHQALHKLSIRY--GPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYW 126 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~y--G~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w 126 (376)
.+..+++..+.+++++| |||+++.+|+ +.++++||+++++++++ .+.|.+++..........+ ...++..+|+.|
T Consensus 16 ~~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 92 (398)
T 4fb2_A 16 GPDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQN-TKAFSNKGVTFPRYETGEF-ELMMAGQDDPVH 92 (398)
T ss_dssp CTTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHTC-CSSEEGGGCSSSCC----C-CCTTTTCCTTHH
T ss_pred hhhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHhC-hhhccCCcccccCCCCccc-ccCcccCCchHH
Confidence 34578999999999999 9999999985 58999999999999954 4577766543321111111 122456789999
Q ss_pred HHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHHHHHHHHHhCcccCCCchhHHHHH
Q 042142 127 KFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQICSNNDKEADEVR 205 (376)
Q Consensus 127 ~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~dvi~~~~fg~~~~~~~~~~~~~~ 205 (376)
+++||.+ .+.|+++.++.+.+.+.+++.++++.+.+ +..+|+... ...+++++|+. +||.+.+ ....+.
T Consensus 93 ~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~~~~~~ 162 (398)
T 4fb2_A 93 KKYRQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIE----LGEGDAATWLANEIPARLTAI-LLGLPPE----DGDTYR 162 (398)
T ss_dssp HHHHHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTT----TTEEEHCCCCCTTHHHHHHHH-HTTSCGG----GHHHHH
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH----HHHHHH
Confidence 9999997 58899999999999999999999988753 346887544 46899999999 6897643 223333
Q ss_pred HHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccc
Q 042142 206 KLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISE 285 (376)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~ 285 (376)
.....+.. + ...+...+..+.+.+++...++++++ . ...|+++.+++...
T Consensus 163 ~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~d~l~~ll~~~~ 212 (398)
T 4fb2_A 163 RWVWAITH-----------V--------ENPEEGAEIFAELVAHARTLIAERRT-------N----PGNDIMSRVIMSKI 212 (398)
T ss_dssp HHHHHHHH-----------C--------CCHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHCCB
T ss_pred HHHHHHhc-----------C--------CCHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHHccc
Confidence 33333221 0 01123445556667777777766543 1 23599999997643
Q ss_pred cCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHH
Q 042142 286 DESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKE 365 (376)
Q Consensus 286 ~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikE 365 (376)
+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|
T Consensus 213 ~---~~~l~~~~i~~~~~~l~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i~E 271 (398)
T 4fb2_A 213 D---GESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAHPE------------------LIPNAVDE 271 (398)
T ss_dssp T---TBCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCGG------------------GHHHHHHH
T ss_pred C---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhCHH------------------HHHHHHHH
Confidence 2 23599999999999999999999999999999999999999999999974 68999999
Q ss_pred HhccCCCCC
Q 042142 366 TLRLHPTGP 374 (376)
Q Consensus 366 tlRl~p~~p 374 (376)
+||++|++|
T Consensus 272 ~lRl~p~~~ 280 (398)
T 4fb2_A 272 LLRFYGPAM 280 (398)
T ss_dssp HHHHHCCBC
T ss_pred HHHhCCCcC
Confidence 999999987
No 49
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=1.3e-33 Score=263.91 Aligned_cols=275 Identities=14% Similarity=0.127 Sum_probs=200.0
Q ss_pred chHHHHHHHHhcCCeE--EEe-cCCccEEEccCHHHHHHHHHhCCccccCCCCccccccccc---------C---CceeE
Q 042142 54 PHQALHKLSIRYGPLI--HLF-LGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTY---------G---SADFS 118 (376)
Q Consensus 54 ~~~~~~~~~~~yG~i~--~~~-~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~---------~---~~~~~ 118 (376)
|+..+.++ ++||||+ ++. +|+.+++++++|++++++++++ ..|++++.......... + ....+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 78888888 6799999 888 7889999999999999999875 66877654322111100 0 11235
Q ss_pred eccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCC
Q 042142 119 FAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNN 197 (376)
Q Consensus 119 ~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~ 197 (376)
+..+|+.|+++||.+ .+.|+++.++.+.+.+.++++++++.+.+. ++++|+...+ ..+++++|+.+ ||.+..
T Consensus 125 ~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~~~~dl~~~~~~~~~~~vi~~l-~G~~~~-- 197 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA---GEEGDFMALVAAPYPLHVVMQI-LGVPPE-- 197 (450)
T ss_dssp GGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT---CSEEEHHHHTTTHHHHHHHHHH-TTCCGG--
T ss_pred ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEeeHHHHHHHHHHHHHHHH-cCCChh--
Confidence 567899999999997 589999999999999999999999999752 5789998887 68999999996 897543
Q ss_pred chhHHHHHHHHHHHHhhhcCccccchhhhhhhh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccH
Q 042142 198 DKEADEVRKLVQETAELTGKFNLQDYIWFCKNI-DLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDL 276 (376)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dl 276 (376)
+...+......+.. .. .....++..++ ......++..+..+.+.+++..+++++++ . ...|+
T Consensus 198 --~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dl 260 (450)
T 3tkt_A 198 --DEPKMLFLTQQMFG---GQ-DEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRR-------N----PTDDV 260 (450)
T ss_dssp --GHHHHHHHHHTTSC---CC-----------------HHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSH
T ss_pred --HHHHHHHHHHHHhc---cc-cchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCH
Confidence 22333333333211 11 11111111111 01122345555666677777777766532 1 13589
Q ss_pred HHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCC
Q 042142 277 LDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINL 356 (376)
Q Consensus 277 l~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~l 356 (376)
++.|++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|+
T Consensus 261 l~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~~l~~E~------------------ 319 (450)
T 3tkt_A 261 ATVIANAVVD---GEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARDPDLFARVKADR------------------ 319 (450)
T ss_dssp HHHHHTCEET---TEECCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHCG------------------
T ss_pred HHHHHhcccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHCH------------------
Confidence 9999976432 2359999999999999999999999999999999999999999999996
Q ss_pred hhHHHHHHHHhccCCCCCC
Q 042142 357 PYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 357 pyl~avikEtlRl~p~~p~ 375 (376)
+|++|||+|+||++||+|.
T Consensus 320 ~~l~a~i~E~LRl~pp~~~ 338 (450)
T 3tkt_A 320 NLLPGIVEEAIRWTTPVQH 338 (450)
T ss_dssp GGHHHHHHHHHHHHCSBCE
T ss_pred HHHHHHHHHHHHhCCCccC
Confidence 3899999999999999873
No 50
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=100.00 E-value=5.1e-34 Score=265.34 Aligned_cols=281 Identities=11% Similarity=0.101 Sum_probs=201.4
Q ss_pred CCCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEe--------cCCccEEEccCHHHHHHHHHhCCccccCCCCc
Q 042142 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLF--------LGSVPCIVACSPETAKEILKTHETSFCDRPIS 104 (376)
Q Consensus 33 ~~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~--------~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~ 104 (376)
..||+|.+++++.......++|+..+.++ ++||||+++. +|+.+++++++|+++++++++. ..|++++..
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~ 95 (433)
T 3ivy_A 18 PSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYENG 95 (433)
T ss_dssp --CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTTTC
T ss_pred CCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCccc
Confidence 45677777776655433346799999999 7899999998 5557999999999999999764 567766543
Q ss_pred cccc--------ccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH
Q 042142 105 ATVD--------YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE 176 (376)
Q Consensus 105 ~~~~--------~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~ 176 (376)
.... ....+. ..++..+|+.|+++||.+ .+.|+++.++.+.+.+.++++++++.+.. ++++|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~ 169 (433)
T 3ivy_A 96 VIPRFKNDIAREDIEVQR-FVMLNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAA----AGSGDFVEQ 169 (433)
T ss_dssp SCCCCCTTCCHHHHHGGG-GSGGGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHH----HCEEEHHHH
T ss_pred cccccccccccccccccc-CCccccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh----CCCeeHHHH
Confidence 2221 111111 224567899999999997 68899999999999999999999999874 346999888
Q ss_pred H-HHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 042142 177 L-IRLTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIK 255 (376)
Q Consensus 177 ~-~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (376)
+ ..+++++|+.+ ||.+.. ....+.. ....... ...|... ..+..+..+.+.+++..+++
T Consensus 170 ~~~~~~~~vi~~l-~G~~~~----~~~~~~~----~~~~~~~----~~~p~~~-------~~~~~~~~~~~~~~~~~~i~ 229 (433)
T 3ivy_A 170 VSCELPLQAIAGL-LGVPQE----DRGKLFH----WSNEMTG----NEDPEYA-------HIDPKASSAELIGYAMKMAE 229 (433)
T ss_dssp TTSHHHHHHHHHH-HTCCHH----HHHHHHH----HHTTCSC----CCCGGGT-------TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHH----HHHHHHH----HHHHHhc----cCCchhh-------hHHHHHHHHHHHHHHHHHHH
Confidence 7 99999999996 886321 1122222 1111111 0111110 01234455666777777776
Q ss_pred HHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHH
Q 042142 256 EHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAR 335 (376)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~ 335 (376)
++++. ...|+++.|++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|++
T Consensus 230 ~r~~~-----------~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~ll~AG~dTTa~~l~~~l~~L~~~P~~~~~l~ 295 (433)
T 3ivy_A 230 EKAKN-----------PADDIVTQLIQADID---GEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELYK 295 (433)
T ss_dssp HC------------------CHHHHHSCC-----CCCCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHhcC-----------CCCcHHHHHHhhhcC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 54321 135899999976322 2359999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 336 EEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 336 ~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
+|++ +|||+|+||++||+|.
T Consensus 296 ~E~~--------------------~a~i~E~LRl~p~~~~ 315 (433)
T 3ivy_A 296 KVRP--------------------ETAADEIVRWATPVTA 315 (433)
T ss_dssp HHCC--------------------TTHHHHHHHHHCSBCE
T ss_pred hCcc--------------------cchhHHHhhhCcchhc
Confidence 9974 7999999999999874
No 51
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=100.00 E-value=1.8e-33 Score=259.88 Aligned_cols=264 Identities=14% Similarity=0.183 Sum_probs=195.6
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCCccccc------cccc---CCceeE
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISATVD------YLTY---GSADFS 118 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~------~~~~---~~~~~~ 118 (376)
.+..+|+..+.++. +||||+++++ |+.++++++||+++++++.++ .|.+++...... .... +..+.+
T Consensus 19 ~~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (413)
T 2z36_A 19 GCPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLM 95 (413)
T ss_dssp CBTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCG
T ss_pred ccccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccc
Confidence 35578899999997 7899999997 889999999999999999863 466654221110 1100 122313
Q ss_pred eccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHH-HHHHHHHHHHHhCcccCCC
Q 042142 119 FAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSNN 197 (376)
Q Consensus 119 ~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~-~~~~dvi~~~~fg~~~~~~ 197 (376)
+..+|+.|+++|+.+ .+.|+++.++.+.+.+.++++++++.+.+ ..++++|+...+. .+++++|+.+ ||.+.+.
T Consensus 96 ~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~- 170 (413)
T 2z36_A 96 LGMDGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLA--TDQRPVDLVQALSLPVPSLVICEL-LGVPYTD- 170 (413)
T ss_dssp GGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTT--CSCSSEEHHHHTTTHHHHHHHHHH-HTCCGGG-
T ss_pred cccCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCccHHHHHhhhhHHHHHHHH-hCCCHHH-
Confidence 456799999999997 57899999999999999999999999864 2256899986665 6999999995 9986542
Q ss_pred chhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHH
Q 042142 198 DKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLL 277 (376)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll 277 (376)
.+.+......+ . ... .+ ++..+..+.+.+++..+++++++ . ...|++
T Consensus 171 ---~~~~~~~~~~~---~---~~~----------~~---~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll 217 (413)
T 2z36_A 171 ---HDFFQSRTTMM---V---SRT----------SM---EDRRRAFAELRAYIDDLITRKES-------E----PGDDLF 217 (413)
T ss_dssp ---HHHHHHHHHHT---T---CSS----------CH---HHHHHHHHHHHHHHHHHHHHHHS-------S----CCSSHH
T ss_pred ---HHHHHHHHHHH---h---ccc----------Cc---HHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHH
Confidence 12232222111 0 000 00 33444555666677666665431 1 135899
Q ss_pred HHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCCh
Q 042142 278 DMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLP 357 (376)
Q Consensus 278 ~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lp 357 (376)
+.+++... ++..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|++
T Consensus 218 ~~ll~~~~---~~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------ 276 (413)
T 2z36_A 218 SRQIARQR---QEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVVKANPG------------------ 276 (413)
T ss_dssp HHHHHHHH---HHSCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHCGG------------------
T ss_pred HHHHHhhc---CCCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhCHHHHHHHHhChH------------------
Confidence 99987521 123589999999999999999999999999999999999999999999952
Q ss_pred hHHHHHHHHhccCCCCC
Q 042142 358 YLQALVKETLRLHPTGP 374 (376)
Q Consensus 358 yl~avikEtlRl~p~~p 374 (376)
|++|||+|+||++||+|
T Consensus 277 ~l~a~i~E~lRl~p~~~ 293 (413)
T 2z36_A 277 RTPMAVEELLRYFTIAD 293 (413)
T ss_dssp GHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 89999999999999998
No 52
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.2e-33 Score=257.36 Aligned_cols=262 Identities=12% Similarity=0.084 Sum_probs=196.3
Q ss_pred CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHHHH
Q 042142 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFMK 130 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 130 (376)
..+|+..+.++++ ||||+++. . +.++++||+++++++.+++ .|++++... .... .+ .+ ++..+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~-~~-~~-l~~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP-AL-PM-MIDMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC-CC-SS-GGGCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCcc-cccCccccC-Cccc-cc-cc-ccccCchHHHHHH
Confidence 4678899999987 99999654 3 7899999999999998653 677665322 1111 11 22 4456799999999
Q ss_pred HHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHH-HHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHH
Q 042142 131 KLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGK-ELIRLTNNVVSRMTMGQICSNNDKEADEVRKLVQ 209 (376)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~-~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~ 209 (376)
+.+ .+.|+++.++.+.+.+.+++.++++.+.+ ++++|+.. ....+++|+|+.+ ||.+.+. ...+.....
T Consensus 88 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~----~~~~~~~~~ 157 (398)
T 2xkr_A 88 KLV-NAGFTRKRVKDKEASIAALCDTLIDAVCE----RGECDFVRDLAAPLPMAVIGDM-LGVRPEQ----RDMFLRWSD 157 (398)
T ss_dssp HHH-GGGSCHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTHHHHHHHHHH-HTCCGGG----HHHHHHHHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCccHHHHHHHHHHHHHHHHH-hCCCHHH----HHHHHHHHH
Confidence 997 68899999999999999999999998854 24799984 4568999999998 9987642 233444433
Q ss_pred HHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcc
Q 042142 210 ETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESS 289 (376)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~ 289 (376)
....... ..+.| ...++..+..+.+.+++..+++++++ . ...|+++.+++...+
T Consensus 158 ~~~~~~~----~~~~p--------~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll~~ll~~~~~--- 211 (398)
T 2xkr_A 158 DLVTFLS----SHVSQ--------EDFQITMDAFAAYNDFTRATIAARRA-------D----PTDDLVSVLVSSEVD--- 211 (398)
T ss_dssp HHHHHHT----SCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHCCBT---
T ss_pred HHHhccC----cccch--------hhHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHHhhcc---
Confidence 3322211 00111 11233445556677777777766532 1 235999999976322
Q ss_pred cccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhcc
Q 042142 290 EIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRL 369 (376)
Q Consensus 290 ~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl 369 (376)
+..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+||+
T Consensus 212 ~~~ls~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i~E~lRl 273 (398)
T 2xkr_A 212 GERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRDPS------------------LLPGAIEEMLRW 273 (398)
T ss_dssp TBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHSHHHHHHHHHCGG------------------GHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHCHHHHHHHHhCHH------------------HHHHHHHHHHhh
Confidence 23589999999999999999999999999999999999999999999975 899999999999
Q ss_pred CCCCCC
Q 042142 370 HPTGPM 375 (376)
Q Consensus 370 ~p~~p~ 375 (376)
+|++|.
T Consensus 274 ~p~~~~ 279 (398)
T 2xkr_A 274 TAPVKN 279 (398)
T ss_dssp HCSBCE
T ss_pred cccccC
Confidence 999874
No 53
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=100.00 E-value=1.4e-33 Score=260.18 Aligned_cols=263 Identities=16% Similarity=0.192 Sum_probs=198.0
Q ss_pred cCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCc--c----ccc---cc-c-----cCC
Q 042142 50 LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS--A----TVD---YL-T-----YGS 114 (376)
Q Consensus 50 ~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~--~----~~~---~~-~-----~~~ 114 (376)
+..+|+..+.++ ++||||+++++|+.+.++++||+++++++.++ .|++++.. . ... .+ . .+
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFA- 87 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHS-
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcc-
Confidence 456889999999 99999999999999999999999999999875 57665432 1 100 11 0 12
Q ss_pred ceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcc
Q 042142 115 ADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQI 193 (376)
Q Consensus 115 ~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~ 193 (376)
.+ ++..+|+.|+++||.+ .+.|+.+.++.+.+.+.++++++++.+.. ++++|+...+ ..+++|+|+.+ ||.+
T Consensus 88 ~~-l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~ 160 (404)
T 1z8o_A 88 TN-MGTSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIKVICEL-LGVD 160 (404)
T ss_dssp SS-GGGCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHHHHHHH-TTCC
T ss_pred cc-cccCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHHHHHHH-hCCC
Confidence 23 3456799999999997 57899999999999999999999988743 5689998765 68999999985 9986
Q ss_pred cCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 042142 194 CSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAP 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (376)
.+.. ..+......+.. . . .| . .++..+..+.+.+++...++++++ . ..
T Consensus 161 ~~~~----~~~~~~~~~~~~----~-~---~p--------~-~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~ 208 (404)
T 1z8o_A 161 EKYR----GEFGRWSSEILV----M-D---PE--------R-AEQRGQAAREVVNFILDLVERRRT-------E----PG 208 (404)
T ss_dssp GGGT----TTHHHHHHHHHC----C-C---GG--------G-HHHHHHHHHHHHHHHHHHHHHHHH-------S----CC
T ss_pred HHHH----HHHHHHHHHHhc----c-C---Ch--------h-HHHHHHHHHHHHHHHHHHHHHHHh-------C----CC
Confidence 6532 123333333221 1 0 01 1 233445556667777777766532 1 13
Q ss_pred ccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccC
Q 042142 274 MDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDI 353 (376)
Q Consensus 274 ~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l 353 (376)
.|+++.+++...++ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++
T Consensus 209 ~dll~~ll~~~~~~--~~~l~~~ei~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~-------------- 272 (404)
T 1z8o_A 209 DDLLSALIRVQDDD--DGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRDPS-------------- 272 (404)
T ss_dssp SSHHHHHHHCEETT--TEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCGG--------------
T ss_pred CCHHHHHHhhhccc--CCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCHHHHHHHHhCHH--------------
Confidence 58999998751121 23589999999999999999999999999999999999999999999852
Q ss_pred CCChhHHHHHHHHhccCCCCCC
Q 042142 354 INLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 354 ~~lpyl~avikEtlRl~p~~p~ 375 (376)
|++|||+|+||++||+|.
T Consensus 273 ----~l~a~i~E~lRl~p~~~~ 290 (404)
T 1z8o_A 273 ----ALPNAVEEILRYIAPPET 290 (404)
T ss_dssp ----GHHHHHHHHHHHTCSSCC
T ss_pred ----hHHHHHHHHHHhcCCccC
Confidence 799999999999999983
No 54
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=100.00 E-value=1.2e-32 Score=253.53 Aligned_cols=256 Identities=16% Similarity=0.215 Sum_probs=193.3
Q ss_pred cCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCCcc-cccccccCCcee-EeccCC---
Q 042142 50 LAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISA-TVDYLTYGSADF-SFAPYG--- 123 (376)
Q Consensus 50 ~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~-~~~~~~~~~~~~-~~~~~g--- 123 (376)
+..+|+..+.++ ++||||+++++ |+.+.++++||+++++|+.++ .|.+++... .......+ .+. ++..+|
T Consensus 24 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~-~~~~l~~~~g~~~ 99 (404)
T 2xbk_A 24 KMLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVRS-PFLDLLISDADAE 99 (404)
T ss_dssp BTTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSCC-HHHHTTCBCSCHH
T ss_pred cccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccccc-ccccceeeCCCCC
Confidence 456788999999 89999999996 889999999999999999864 365554321 11111111 221 345579
Q ss_pred ---hhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCch
Q 042142 124 ---PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDK 199 (376)
Q Consensus 124 ---~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~ 199 (376)
+.|+++||.+ .+.|+++.++.+.+.+.+++.++++.+.. .++++|+...+ ..+++++|+. +||.+.+.
T Consensus 100 ~~~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--- 171 (404)
T 2xbk_A 100 SGRRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALTVLCE-VIGVPPQR--- 171 (404)
T ss_dssp HHHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHHHHHH-HHTCCGGG---
T ss_pred CCCchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHH-HhCCCHHH---
Confidence 9999999997 57899999999999999999999999974 35689998766 5699999997 79986542
Q ss_pred hHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHH
Q 042142 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDM 279 (376)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ 279 (376)
...+......+.. ... + + +..+..+.+.+++...++++++. ...|+++.
T Consensus 172 -~~~~~~~~~~~~~------~~~--~-------p----~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~ 220 (404)
T 2xbk_A 172 -RAELTTLLAGIAK------LDD--R-------E----GAVRAQDDLFGYVAGLVEHKRAE-----------PGPDIISR 220 (404)
T ss_dssp -HHHHHHHHHHHTB------SSC--H-------H----HHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHH
T ss_pred -HHHHHHHHHHHHh------ccC--c-------H----HHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence 2233333332211 000 0 0 23444556667777777654321 12589998
Q ss_pred HhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhH
Q 042142 280 LLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYL 359 (376)
Q Consensus 280 ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl 359 (376)
+ + + + .++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |+
T Consensus 221 l-~---~---~-~ls~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l 274 (404)
T 2xbk_A 221 L-N---D---G-ELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALADPD------------------VM 274 (404)
T ss_dssp H-H---S---S-SCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHCHH------------------HH
T ss_pred h-h---c---C-CCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHhCHH------------------HH
Confidence 8 2 1 2 589999999999999999999999999999999999999999999974 89
Q ss_pred HHHHHHHhccCCCCC
Q 042142 360 QALVKETLRLHPTGP 374 (376)
Q Consensus 360 ~avikEtlRl~p~~p 374 (376)
+|||+|+||++||+|
T Consensus 275 ~a~i~E~lRl~p~~~ 289 (404)
T 2xbk_A 275 ARAVEEVLRTARAGG 289 (404)
T ss_dssp HHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999999998
No 55
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=100.00 E-value=3.7e-33 Score=257.53 Aligned_cols=267 Identities=16% Similarity=0.191 Sum_probs=195.6
Q ss_pred CCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccc---c-cccCCceeEeccCChhH
Q 042142 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVD---Y-LTYGSADFSFAPYGPYW 126 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~---~-~~~~~~~~~~~~~g~~w 126 (376)
..+|+..+.++ ++||||+++++|+.+.++++||+++++++.++ ..|++++...... . ......+ ++..+|+.|
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~~h 88 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQM-MLFQNQPDH 88 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTS-GGGCCTTHH
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcc-hhhcCCchH
Confidence 45788888888 58999999999999999999999999999976 5677665321110 0 0001112 456679999
Q ss_pred HHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHHHHHHHHHhCcccCCCchhHHHHH
Q 042142 127 KFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQICSNNDKEADEVR 205 (376)
Q Consensus 127 ~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~dvi~~~~fg~~~~~~~~~~~~~~ 205 (376)
+++||.+ .+.|+++.++.+.+.+.+++.++++.+.+ +.++|+... ...+++++|+.+ ||.+.+. ...+.
T Consensus 89 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~----~~~~~ 158 (404)
T 3ejb_B 89 RRLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQG----KKKMEVISDFAFPLASFVIANI-IGVPEED----REQLK 158 (404)
T ss_dssp HHHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTHHHHHHHHHHHH-HTCCGGG----HHHHH
T ss_pred HHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHHHH-cCCCHHH----HHHHH
Confidence 9999997 58899999999999999999999988753 457898655 456999999985 8976542 23333
Q ss_pred HHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccc
Q 042142 206 KLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISE 285 (376)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~ 285 (376)
............ |+. ....+...+..+.+.+++...++++++ . ...|+++.++ ..
T Consensus 159 ~~~~~~~~~~~~-------p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~d~l~~ll-~~- 213 (404)
T 3ejb_B 159 EWAASLIQTIDF-------TRS-----RKALTEGNIMAVQAMAYFKELIQKRKR-------H----PQQDMISMLL-KG- 213 (404)
T ss_dssp HHHHHHHGGGST-------TCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHH-HC-
T ss_pred HHHHHHHHhccC-------CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh-------C----CcchHHHHHH-hc-
Confidence 333332221110 111 011233445556666777777765532 1 2369999998 32
Q ss_pred cCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHH
Q 042142 286 DESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKE 365 (376)
Q Consensus 286 ~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikE 365 (376)
++ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|
T Consensus 214 ~~--~~~ls~~el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i~E 273 (404)
T 3ejb_B 214 RE--KDKLTEEEAASTCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLRENPD------------------LIGTAVEE 273 (404)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCGG------------------GHHHHHHH
T ss_pred cc--CCCCCHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHCHHHHHHHHhCHH------------------HHHHHHHH
Confidence 21 23589999999999999999999999999999999999999999999964 79999999
Q ss_pred HhccCCCCCC
Q 042142 366 TLRLHPTGPM 375 (376)
Q Consensus 366 tlRl~p~~p~ 375 (376)
+||++|++|.
T Consensus 274 ~lRl~p~~~~ 283 (404)
T 3ejb_B 274 CLRYESPTQM 283 (404)
T ss_dssp HHHHSCSBCE
T ss_pred HHHhCCcccc
Confidence 9999999873
No 56
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=100.00 E-value=3.4e-33 Score=258.06 Aligned_cols=264 Identities=18% Similarity=0.190 Sum_probs=196.6
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCC-Ccccc--ccccc--------C-Cc
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRP-ISATV--DYLTY--------G-SA 115 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~-~~~~~--~~~~~--------~-~~ 115 (376)
.+..+++..+.++ ++||||+++++ |+.++++++||+++++++.++. +++++ ..... ..... + ..
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 3556889999999 99999999997 8899999999999999998653 33332 11100 00000 1 12
Q ss_pred eeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHH-HHHHHHHHHHHhCccc
Q 042142 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQIC 194 (376)
Q Consensus 116 ~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~-~~~~dvi~~~~fg~~~ 194 (376)
+ ++..+|+.|+++|+.+ .+.|+.+.++.+.+.+.++++++++.+.+ .++++|+...+. .+++|+|+. +||.+.
T Consensus 91 ~-l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 164 (411)
T 1gwi_A 91 S-MLTVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAFAYPLPMYVVAD-LMGIEE 164 (411)
T ss_dssp S-GGGCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred c-cccCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhHHHHHHHHH-HhCCCH
Confidence 2 4566899999999997 58899999999999999999999988852 356899998876 599999996 699865
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 042142 195 SNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPM 274 (376)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (376)
+. .+.+......+... . . ..++..+..+.+.+++..+++++++ . ...
T Consensus 165 ~~----~~~~~~~~~~~~~~----~----~----------~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~ 211 (411)
T 1gwi_A 165 AR----LPRLKVLFEKFFST----Q----T----------PPEEVVATLTELASIMTDTVAAKRA-------A----PGD 211 (411)
T ss_dssp GG----HHHHHHHHHHHHCT----T----S----------CHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCS
T ss_pred HH----HHHHHHHHHHHhcc----C----C----------ChHHHHHHHHHHHHHHHHHHHHHHh-------C----CCC
Confidence 42 23343333332210 0 0 0123445556667777777766432 1 135
Q ss_pred cHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCC
Q 042142 275 DLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDII 354 (376)
Q Consensus 275 dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~ 354 (376)
|+++.+++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+
T Consensus 212 d~l~~ll~~~~~---~~~l~~~~i~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e~---------------- 272 (411)
T 1gwi_A 212 DLTSALIQASEN---GDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGE---------------- 272 (411)
T ss_dssp SHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTS----------------
T ss_pred CHHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhChHHHHHHHcCh----------------
Confidence 899999976321 2358999999999999999999999999999999999999999999973
Q ss_pred CChhHHHHHHHHhccCCCCCC
Q 042142 355 NLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 355 ~lpyl~avikEtlRl~p~~p~ 375 (376)
+|++|||+|+||++||+|.
T Consensus 273 --~~l~a~i~E~lRl~p~~~~ 291 (411)
T 1gwi_A 273 --AEWSAVVEETLRFSTPTSH 291 (411)
T ss_dssp --SCHHHHHHHHHHHSCSBCC
T ss_pred --HHHHHHHHHHHHhCCcccC
Confidence 3799999999999999984
No 57
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=100.00 E-value=5.5e-33 Score=257.68 Aligned_cols=267 Identities=15% Similarity=0.135 Sum_probs=193.0
Q ss_pred CCCchHHHHHHHHhcCCeEEEecC--CccEEEccCHHHHHHHHHhCCccccCCCCc--------c-ccc-----ccccCC
Q 042142 51 APIPHQALHKLSIRYGPLIHLFLG--SVPCIVACSPETAKEILKTHETSFCDRPIS--------A-TVD-----YLTYGS 114 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g--~~~~v~i~dp~~~~~il~~~~~~f~~~~~~--------~-~~~-----~~~~~~ 114 (376)
..+|+..+.++. +||||+++++| +.++++++||+.+++|+.++ .|++++.. . ... ....++
T Consensus 19 ~~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2z3t_A 19 IADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVE 95 (425)
T ss_dssp HHCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHT
T ss_pred hcChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccc
Confidence 457888898886 49999999987 78899999999999999864 67766531 0 100 000111
Q ss_pred ceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcc
Q 042142 115 ADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQI 193 (376)
Q Consensus 115 ~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~ 193 (376)
.+ ++..+|+.|+++||.+ .+.|+++.++.+.+.+.+++.++++.+.+ . +++|+...+ ..+++|+|+.+ ||.+
T Consensus 96 ~~-l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~-g~~dl~~~~~~~~~~~vi~~~-~G~~ 168 (425)
T 2z3t_A 96 NW-LVFLDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRA---Q-RRPDLVEGFAAPLPILVISAL-LGIP 168 (425)
T ss_dssp TC-GGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTT---S-SSCBHHHHTTTHHHHHHHHHH-HTCC
T ss_pred cc-cccCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCccHHHHHHHHHHHHHHHHH-hCCC
Confidence 23 3455799999999997 58899999999999999999999999864 2 379998754 78999999998 9987
Q ss_pred cCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 042142 194 CSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAP 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (376)
.+. ...+......+.... ..++ +. ....++..+..+.+.+++...++++++. ..
T Consensus 169 ~~~----~~~~~~~~~~~~~~~------~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~ 222 (425)
T 2z3t_A 169 EED----HTWLRANAVALQEAS------TTRA----RD-GRGYARAEAASQEFTRYFRREVDRRGGD-----------DR 222 (425)
T ss_dssp GGG----HHHHHHHHHHHHTTC------TTCC----C----HHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred HHH----HHHHHHHHHHHHhhc------cccC----CC-HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CC
Confidence 642 223433333332111 1111 00 0112334445556666666666544321 13
Q ss_pred ccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccC
Q 042142 274 MDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDI 353 (376)
Q Consensus 274 ~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l 353 (376)
.|+++.|++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|++
T Consensus 223 ~dll~~ll~~~~~---~~~ls~~el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~-------------- 285 (425)
T 2z3t_A 223 DDLLTLLVRARDT---GSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTTPE-------------- 285 (425)
T ss_dssp -CHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHCHHHHHHHHHCGG--------------
T ss_pred CCHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhChH--------------
Confidence 5899999875322 23589999999999999999999999999999999999999999999963
Q ss_pred CCChhHHHHHHHHhccCCCCC
Q 042142 354 INLPYLQALVKETLRLHPTGP 374 (376)
Q Consensus 354 ~~lpyl~avikEtlRl~p~~p 374 (376)
|++|||+|+||++||+|
T Consensus 286 ----~l~a~i~E~lRl~p~~~ 302 (425)
T 2z3t_A 286 ----STPAAVEELMRYDPPVQ 302 (425)
T ss_dssp ----GHHHHHHHHHHHSCSBC
T ss_pred ----hHHHHHHHHHHhCCccc
Confidence 89999999999999987
No 58
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=100.00 E-value=2.6e-33 Score=259.55 Aligned_cols=268 Identities=16% Similarity=0.216 Sum_probs=198.2
Q ss_pred cCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCC-----cc-c--ccccccC-CceeEec
Q 042142 50 LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI-----SA-T--VDYLTYG-SADFSFA 120 (376)
Q Consensus 50 ~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~-----~~-~--~~~~~~~-~~~~~~~ 120 (376)
+..+++..+.++ ++||||++ + ++.++++++||+++++++.++. |.+++. .. . ....... ..+ ++.
T Consensus 24 ~~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 97 (419)
T 1q5d_A 24 YAEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYG-LFG 97 (419)
T ss_dssp TTTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHS-TTT
T ss_pred hhhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccc-ccc
Confidence 456889999998 78999999 6 7789999999999999998764 877651 11 1 1111100 112 345
Q ss_pred cCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHHHHHHHHHhCcccCCCch
Q 042142 121 PYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQICSNNDK 199 (376)
Q Consensus 121 ~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~dvi~~~~fg~~~~~~~~ 199 (376)
.+|+.|+++||.+ .+.|+.+.++.+.+.+.+++.++++.+.+ ++++|+... ...+++|+|+.+ ||.+++.
T Consensus 98 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--- 168 (419)
T 1q5d_A 98 LPPEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSG----QEEFDVVRDYAEGIPMRAISAL-LKVPAEC--- 168 (419)
T ss_dssp SCHHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTT----SSCEETTTTTGGGSHHHHHHHH-TTCCGGG---
T ss_pred CCchHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHH-hCCCHHH---
Confidence 6799999999997 58899999999999999999999999864 237998754 589999999998 9987652
Q ss_pred hHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc-cHHH
Q 042142 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPM-DLLD 278 (376)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-dll~ 278 (376)
...+......+..... ...+|+. ....++..+..+.+.+++...++++++ . ... |+++
T Consensus 169 -~~~~~~~~~~~~~~~~----~~~~P~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~~dll~ 227 (419)
T 1q5d_A 169 -DEKFRRFGSATARALG----VGLVPRV-----DEETKTLVASVTEGLALLHGVLDERRR-------N----PLENDVLT 227 (419)
T ss_dssp -HHHHHHHHHHHHHHTT----TTTSSCC-----CSCHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSCHHH
T ss_pred -HHHHHHHHHHHHHhcc----cccccCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCCHHH
Confidence 2334444443332211 1112211 111234455566677777777766532 1 134 8999
Q ss_pred HHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChh
Q 042142 279 MLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPY 358 (376)
Q Consensus 279 ~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpy 358 (376)
.+++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|+ .|
T Consensus 228 ~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~------------------~~ 286 (419)
T 1q5d_A 228 MLLQAEAD---GSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVKAEP------------------GL 286 (419)
T ss_dssp HHHHHHHS---STTCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHCG------------------GG
T ss_pred HHHhhhcc---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhCH------------------HH
Confidence 99975321 2358999999999999999999999999999999999999999999994 38
Q ss_pred HHHHHHHHhccCCCCC
Q 042142 359 LQALVKETLRLHPTGP 374 (376)
Q Consensus 359 l~avikEtlRl~p~~p 374 (376)
++|||+|+||++|++|
T Consensus 287 l~a~i~E~lRl~p~~~ 302 (419)
T 1q5d_A 287 MRNALDEVLRFDNILR 302 (419)
T ss_dssp HHHHHHHHHHHSCSBS
T ss_pred HHHHHHHHHHhCCccc
Confidence 9999999999999998
No 59
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=100.00 E-value=1.2e-32 Score=254.49 Aligned_cols=264 Identities=13% Similarity=0.097 Sum_probs=194.0
Q ss_pred CCCchHHHHHHHHhcCCeE-----EEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc-ccc--cc-c-cCCceeEec
Q 042142 51 APIPHQALHKLSIRYGPLI-----HLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-TVD--YL-T-YGSADFSFA 120 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~-----~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~-~~~--~~-~-~~~~~~~~~ 120 (376)
..+|+..+.++. +||||+ ++++ .+.++++||+++++++.++ ..|++++... ... .. . .+..+ ++.
T Consensus 24 ~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-l~~ 98 (414)
T 2uuq_A 24 WPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPP-MVM 98 (414)
T ss_dssp TTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCC-GGG
T ss_pred ccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccc-ccc
Confidence 367888898885 799999 7776 6899999999999999975 5677765432 111 11 1 11223 345
Q ss_pred cCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehH-HHHHHHHHHHHHHHHhCcccCCCch
Q 042142 121 PYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVG-KELIRLTNNVVSRMTMGQICSNNDK 199 (376)
Q Consensus 121 ~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~-~~~~~~~~dvi~~~~fg~~~~~~~~ 199 (376)
.+|+.|+++||.+ .+.|+++.++.+.+.+.+++.++++.+.+. +++|+. +.+..+++|+|+. +||.+++.
T Consensus 99 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~vdl~~~~~~~~~~~vi~~-~~G~~~~~--- 169 (414)
T 2uuq_A 99 QDPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN----GGGDIVTELFKPLPSMVVAH-YLGVPEED--- 169 (414)
T ss_dssp CCTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEHHHHTTTHHHHHHHHH-HTTCCGGG---
T ss_pred CCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHhHHHHHHH-HhCCCHHH---
Confidence 5799999999997 588999999999999999999999999752 369997 5567999999999 69987652
Q ss_pred hHHHHHHHHHHHHhhhcCccccchh-hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHH
Q 042142 200 EADEVRKLVQETAELTGKFNLQDYI-WFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLD 278 (376)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~ 278 (376)
.+.+......+... .++ |.. ++..+..+.+.+++..+++++++ . ...|+++
T Consensus 170 -~~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll~ 221 (414)
T 2uuq_A 170 -WTQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRT-------E----PADDAIS 221 (414)
T ss_dssp -HHHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTT-------S----CCSSHHH
T ss_pred -HHHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHH
Confidence 22333333332211 011 110 11233445566666666655421 1 2359999
Q ss_pred HHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChh
Q 042142 279 MLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPY 358 (376)
Q Consensus 279 ~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpy 358 (376)
.+++...+ .++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|+ +|
T Consensus 222 ~ll~~~~~-~~~~~ls~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E~------------------~~ 282 (414)
T 2uuq_A 222 HLVAAGVG-ADGDTAGTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLLDDP------------------EG 282 (414)
T ss_dssp HHHHTTTT-CTTCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHCG------------------GG
T ss_pred HHHhcccc-cCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHhCH------------------HH
Confidence 99976321 012358899999999999999999999999999999999999999999986 39
Q ss_pred HHHHHHHHhccCCCCCC
Q 042142 359 LQALVKETLRLHPTGPM 375 (376)
Q Consensus 359 l~avikEtlRl~p~~p~ 375 (376)
++|||+|+||++||+|.
T Consensus 283 l~a~i~E~lRl~p~~~~ 299 (414)
T 2uuq_A 283 IPDAVEELLRLTSPVQG 299 (414)
T ss_dssp HHHHHHHHHHHHCSBCC
T ss_pred HHHHHHHHHHhCCCcCC
Confidence 99999999999999984
No 60
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=100.00 E-value=1.4e-32 Score=252.92 Aligned_cols=260 Identities=19% Similarity=0.254 Sum_probs=191.1
Q ss_pred CCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccc------ccccc--CCceeEeccCC
Q 042142 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATV------DYLTY--GSADFSFAPYG 123 (376)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~------~~~~~--~~~~~~~~~~g 123 (376)
.+|+..+.++ ++||||++ + +.+.++++||+++++++.+ ..|.+++..... ..... + .+ ++..+|
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~g 84 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVG-DI-ILFQDE 84 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHT-TC-GGGCCT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccc-cc-cccCCc
Confidence 4678888776 58999998 6 4789999999999999986 346544321100 01110 2 22 345679
Q ss_pred hhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHHHHHHHHHhCcccCCCchhHH
Q 042142 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQICSNNDKEAD 202 (376)
Q Consensus 124 ~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~dvi~~~~fg~~~~~~~~~~~ 202 (376)
+.|+++|+.+ .+.|+++.++.+.+.+.+++.++++.+.. ++++|+... ...+++|+|+.+ ||.+++. .+
T Consensus 85 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~----~~ 154 (397)
T 3buj_A 85 PDHGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRAVLGL-LGLPAAD----WG 154 (397)
T ss_dssp THHHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGGG----HH
T ss_pred hhHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHHHHHH-hCCCHHH----HH
Confidence 9999999997 57899999999999999999999999863 347998754 578999999998 9987652 22
Q ss_pred HHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhc
Q 042142 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLD 282 (376)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~ 282 (376)
.+......+...... .++ +...++..+..+.+.+++...++++++. ...|+++.|++
T Consensus 155 ~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~ll~ 211 (397)
T 3buj_A 155 AVGRWSRDVGRTLDR-----GAS-------AEDMRRGHAAIAEFADYVERALARRRRE-----------GGEDLLALMLD 211 (397)
T ss_dssp HHHHHHHHHHGGGCS-----SCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCSHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-----CCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Confidence 343433333221110 000 0112334455566777777777665432 13589999997
Q ss_pred ccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHH
Q 042142 283 ISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQAL 362 (376)
Q Consensus 283 ~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~av 362 (376)
...+ +. ++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++ |++||
T Consensus 212 ~~~~---~~-ls~~ei~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~ 269 (397)
T 3buj_A 212 AHDR---GL-MSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRRPD------------------LLAQA 269 (397)
T ss_dssp HHHT---TS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHCGG------------------GHHHH
T ss_pred hhhc---CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCHHHHHHHhhCHH------------------HHHHH
Confidence 5321 22 89999999999999999999999999999999999999999999952 99999
Q ss_pred HHHHhccCCCCC
Q 042142 363 VKETLRLHPTGP 374 (376)
Q Consensus 363 ikEtlRl~p~~p 374 (376)
|+|+||++|++|
T Consensus 270 i~E~lRl~p~~~ 281 (397)
T 3buj_A 270 VEECLRYDPSVQ 281 (397)
T ss_dssp HHHHHHHSCSCC
T ss_pred HHHHHhhcCccc
Confidence 999999999997
No 61
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=100.00 E-value=8.1e-33 Score=255.32 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=191.6
Q ss_pred CCCchHHHHHHHHhcCCeEEEecCC--ccEEEccCHHHHHHHHHhCCccccCCCCcc----cccccccC--CceeEeccC
Q 042142 51 APIPHQALHKLSIRYGPLIHLFLGS--VPCIVACSPETAKEILKTHETSFCDRPISA----TVDYLTYG--SADFSFAPY 122 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~--~~~v~i~dp~~~~~il~~~~~~f~~~~~~~----~~~~~~~~--~~~~~~~~~ 122 (376)
+++++..+.+++ +||||+++.+++ .+.+++++|+.+++|+.+. .|.+++... ..... .+ ..+ ++..+
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~-~~~~~~~-l~~~d 100 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPH-FKPRPGS-LAFAD 100 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSC-CCCCTTC-STTCC
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccc-hhccccc-cccCC
Confidence 456779999988 899999999764 7899999999999999863 465543221 11111 11 123 45668
Q ss_pred ChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHH-HHHHHHHHHHHhCcccCCCchhH
Q 042142 123 GPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSNNDKEA 201 (376)
Q Consensus 123 g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~-~~~~dvi~~~~fg~~~~~~~~~~ 201 (376)
|+.|+++|+.+ .+.|+++.++.+.+.+.+.++++++.+... +.++|+...+. .+++|+|+. +||.+++. .
T Consensus 101 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~----~ 171 (411)
T 2dkk_A 101 QPDHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE---GPPADLVERVLEPFPIAVVSE-VMGVPAAD----R 171 (411)
T ss_dssp TTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEHHHHTTTHHHHHHHHH-HHTCCSSH----H
T ss_pred chHHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCeehHHHHHHHHHHHHHHH-HhCCCHHH----H
Confidence 99999999997 578999999999999999999999999762 45799997776 699999998 59986542 2
Q ss_pred HHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHh
Q 042142 202 DEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLL 281 (376)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll 281 (376)
..+..... .... . .+ ..++..+..+.+.+++..+++++++ . ...|+++.|+
T Consensus 172 ~~~~~~~~----~~~~--~---~~---------~~~~~~~~~~~l~~~~~~~i~~r~~-------~----~~~dll~~ll 222 (411)
T 2dkk_A 172 ERVHSWTR----QIIS--T---SG---------GAEAAERAKRGLYGWITETVRARAG-------S----EGGDVYSMLG 222 (411)
T ss_dssp HHHHHHHG----GGCS--S---CS---------CSHHHHHHHHHHHHHHHHHHHTTTT-------C----CSSCHHHHHH
T ss_pred HHHHHHHH----HHHh--c---cc---------hHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHH
Confidence 22222111 1110 0 00 1123344555666666666654321 1 2359999998
Q ss_pred cccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHH
Q 042142 282 DISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQA 361 (376)
Q Consensus 282 ~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~a 361 (376)
+. .+ +..++++++.+++.++++|| |||+++++|++++|++||++|+|+++|++ |++|
T Consensus 223 ~~-~~---~~~ls~~el~~~~~~l~~AG-eTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a 279 (411)
T 2dkk_A 223 AA-VG---RGEVGETEAVGLAGPLQIGG-EAVTHNVGQMLYLLLTRRELMARMRERPG------------------ARGT 279 (411)
T ss_dssp HH-HH---TTSSCTTSHHHHHHHHHHTH-HHHHHHHHHHHHHHHHSHHHHHHHHHCTT------------------CCHH
T ss_pred Hh-cC---CCCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhCHHHHHHHHhCHH------------------HHHH
Confidence 75 22 23589999999999999999 99999999999999999999999999963 7999
Q ss_pred HHHHHhccCCCCC
Q 042142 362 LVKETLRLHPTGP 374 (376)
Q Consensus 362 vikEtlRl~p~~p 374 (376)
||+|+||++||+|
T Consensus 280 ~i~E~lRl~p~~~ 292 (411)
T 2dkk_A 280 ALDELLRWISHRT 292 (411)
T ss_dssp HHHHHHHHSCCBS
T ss_pred HHHHHHhhCCccc
Confidence 9999999999998
No 62
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=100.00 E-value=8.4e-33 Score=256.33 Aligned_cols=272 Identities=15% Similarity=0.161 Sum_probs=195.0
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccccccc-------CCceeEecc
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTY-------GSADFSFAP 121 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~-------~~~~~~~~~ 121 (376)
.+..+|+..+.++ ++||||+++.+| .++++||+.+++++++. ..+++++.......... .....++..
T Consensus 26 ~~~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (418)
T 3r9b_A 26 ATRADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFL 100 (418)
T ss_dssp GGTTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGC
T ss_pred hhccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhc
Confidence 3467899999888 578999998776 89999999999999764 34444442221111100 011224556
Q ss_pred CChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchh
Q 042142 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKE 200 (376)
Q Consensus 122 ~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~ 200 (376)
+|+.|+++||.+ .+.|+++.++.+.+.+.++++++++ +. .+.++|+...+ ..+++++|+. +||.+...
T Consensus 101 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~----~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~---- 169 (418)
T 3r9b_A 101 DPPDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AV----DGPEFNLIDNLAYPLPVAVICR-LLGVPIED---- 169 (418)
T ss_dssp CTTHHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TC----CSSEEEHHHHTTTHHHHHHHHH-HHTCCGGG----
T ss_pred CCchHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hh----ccCCeehHHHHhCcCCHHHHHH-HcCCCHHH----
Confidence 799999999997 5889999999999999999999998 63 23479976555 6899999999 89987642
Q ss_pred HHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHH
Q 042142 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDML 280 (376)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~l 280 (376)
...+............ ..+.+..+ .....++..+..+.+.+++...++++++ . ...|+++.+
T Consensus 170 ~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~r~~-------~----~~~d~l~~l 231 (418)
T 3r9b_A 170 EPKFSRASALLAAALD------PFLALTGE-TSDLFDEQMKAGMWLRDYLRALIDERRR-------T----PGEDLMSGL 231 (418)
T ss_dssp HHHHHHHHHHHHHTTS------CHHHHHSS-CCTTHHHHHHHHHHHHHHHHHHHHHTTT-------S----CCSSHHHHH
T ss_pred HHHHHHHHHHHHhhcC------cccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCccHHHHH
Confidence 2233333333221111 11111111 1122344555566667777666655321 1 246999999
Q ss_pred hcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHH
Q 042142 281 LDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQ 360 (376)
Q Consensus 281 l~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~ 360 (376)
++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++
T Consensus 232 l~~~~~---~~~ls~~ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~ 290 (418)
T 3r9b_A 232 VAVEES---GDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAADGS------------------RAS 290 (418)
T ss_dssp HHHHHH---SSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSTTHHHHHHHCGG------------------GHH
T ss_pred HHhhhc---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCHHHHHHHHhChH------------------hHH
Confidence 975322 23599999999999999999999999999999999999999999999964 899
Q ss_pred HHHHHHhccCCCCCC
Q 042142 361 ALVKETLRLHPTGPM 375 (376)
Q Consensus 361 avikEtlRl~p~~p~ 375 (376)
|||+|+||++|++|.
T Consensus 291 a~i~E~lRl~p~~~~ 305 (418)
T 3r9b_A 291 AVIEETMRYDPPVQL 305 (418)
T ss_dssp HHHHHHHHHSCSBCC
T ss_pred HHHHHHHHhCCcccc
Confidence 999999999999975
No 63
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=100.00 E-value=1.5e-32 Score=253.66 Aligned_cols=262 Identities=14% Similarity=0.148 Sum_probs=193.6
Q ss_pred CCCchHHHHHHHHhcCCeEEEecCC--ccEEEccCHHHHHHHHHhCCccccCCCCccccccccc--CC-ceeEeccCChh
Q 042142 51 APIPHQALHKLSIRYGPLIHLFLGS--VPCIVACSPETAKEILKTHETSFCDRPISATVDYLTY--GS-ADFSFAPYGPY 125 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~--~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~--~~-~~~~~~~~g~~ 125 (376)
..+|+..+.++.+ ||||+++...| .+.+++++|+++++++++. ..|++++.......... +. .+.++..+|+.
T Consensus 36 ~~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 113 (415)
T 3mgx_A 36 TLERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQ 113 (415)
T ss_dssp STTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHH
T ss_pred cCChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccccccccccccccccCCCccccCcHH
Confidence 3578999999987 99999987444 7899999999999999654 46776654322111100 00 12345678999
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhHHHH
Q 042142 126 WKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEADEV 204 (376)
Q Consensus 126 w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~~~~ 204 (376)
|+++||++ .+.|+++.++.+.+.+.+++.++++.+.+ ++++|+...+ ..+++++|+. +||.+.. ....+
T Consensus 114 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~----~~~~~ 183 (415)
T 3mgx_A 114 HRKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLD----GEVCDAATAIGPRIPAAVVCE-ILGVPAE----DEDML 183 (415)
T ss_dssp HHHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSS----SSCEESTTTTTTHHHHHHHHH-HHTCCGG----GHHHH
T ss_pred HHHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHH-HcCCCHH----HHHHH
Confidence 99999996 68899999999999999999999888743 3479998877 6799999998 5886533 23344
Q ss_pred HHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhccc
Q 042142 205 RKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDIS 284 (376)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~ 284 (376)
......+... ....+.+ . + ..+..+.+.+++...++++++ . ...|+++.+++..
T Consensus 184 ~~~~~~~~~~----~~~~~~~------~----~-~~~~~~~l~~~~~~~i~~rr~-------~----~~~dll~~ll~~~ 237 (415)
T 3mgx_A 184 IDLTNHAFGG----EDELFDG------M----T-PRQAHTEILVYFDELITARRK-------E----PGDDLVSTLVTDD 237 (415)
T ss_dssp HHHHHHHTSC----CC----C------C----C-HHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHCT
T ss_pred HHHHHHHHcc----cCcccch------H----H-HHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHhCC
Confidence 4443333211 1111111 0 0 123455666777777766532 1 1359999998652
Q ss_pred ccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHH
Q 042142 285 EDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVK 364 (376)
Q Consensus 285 ~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avik 364 (376)
.++++++..++.++++||+|||+++++|++++|++||++|+|+++|+ ||++|||+
T Consensus 238 -------~ls~~el~~~~~~ll~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E~------------------~~l~a~i~ 292 (415)
T 3mgx_A 238 -------DLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRDGS------------------ADVDTVVE 292 (415)
T ss_dssp -------TSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSTTHHHHHHHTS------------------SCHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCHHHHHHHHhCh------------------HhHHHHHH
Confidence 48999999999999999999999999999999999999999999995 89999999
Q ss_pred HHhccCCCCCC
Q 042142 365 ETLRLHPTGPM 375 (376)
Q Consensus 365 EtlRl~p~~p~ 375 (376)
|+||++||+|.
T Consensus 293 E~LRl~pp~~~ 303 (415)
T 3mgx_A 293 EVLRWTSPAMH 303 (415)
T ss_dssp HHHHHHCCBCE
T ss_pred HHHHhcCcccc
Confidence 99999999873
No 64
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=100.00 E-value=1.1e-32 Score=256.71 Aligned_cols=265 Identities=14% Similarity=0.196 Sum_probs=182.9
Q ss_pred CCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHHHHH
Q 042142 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFMKK 131 (376)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 131 (376)
.+|+..+.++ ++||||+++..++ .+++++|+++++|+.++.. |.+++........ .+ .+.++..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~-~~-~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPV-MR-GPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCS-CC--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-ccccccccccccc-cC-CCccccCCcHHHHHHHH
Confidence 5677777776 6899999987665 8999999999999987644 7766543322221 12 12355677999999999
Q ss_pred HHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehH-HHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHH
Q 042142 132 LCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVG-KELIRLTNNVVSRMTMGQICSNNDKEADEVRKLVQE 210 (376)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~-~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~ 210 (376)
++ .+.|+++.++.+.+.+.+++.++++.|.. +.++|+. +....+++++|+. +||.+... ...+......
T Consensus 127 ~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~----~~~~~~~~~~ 196 (441)
T 3nc3_A 127 IV-VRSFIGDALDHLSPLIKQNAENLLAPYLE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKRD----HEKISEWHSG 196 (441)
T ss_dssp HH-HHHHHHTHHHHHHHHHHHHHHHHHTTTTT----TTEEECCCCCHHHHHHHHHHH-HTTCCGGG----HHHHHHHHHH
T ss_pred HH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHHHH
Confidence 97 68899999999999999999999888753 4578974 4556699999998 58976542 2334444343
Q ss_pred HHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCccc
Q 042142 211 TAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSE 290 (376)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~ 290 (376)
+.......... ....+...+..+.+.+++..+++++++ . ...|+++.|++...+ +
T Consensus 197 ~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~i~~rr~-------~----~~~Dll~~Ll~~~~~---~ 251 (441)
T 3nc3_A 197 VADFITSISQS-----------PEARAHSLWCSEQLSQYLMPVIKERRV-------N----PGSDLISILCTSEYE---G 251 (441)
T ss_dssp HHHHHHCSCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHTT-------S----CCSSHHHHHCC--------
T ss_pred HHHhcccccCC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHHhhcc---C
Confidence 33222111110 011223344555666677666665421 1 235999999976322 2
Q ss_pred ccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccC
Q 042142 291 IKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRLH 370 (376)
Q Consensus 291 ~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~ 370 (376)
..++++++..++.++++||+|||+++++|++++|++||++|+|+++|+ +|++|||+|+||++
T Consensus 252 ~~ls~~el~~~~~~ll~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E~------------------~~l~a~i~E~LRl~ 313 (441)
T 3nc3_A 252 MALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLADR------------------SLVPRAIAETLRYK 313 (441)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHCG------------------GGHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhCH------------------HHHHHHHHHhhhcC
Confidence 359999999999999999999999999999999999999999999985 69999999999999
Q ss_pred CCCCC
Q 042142 371 PTGPM 375 (376)
Q Consensus 371 p~~p~ 375 (376)
||+|.
T Consensus 314 pp~~~ 318 (441)
T 3nc3_A 314 PPVQL 318 (441)
T ss_dssp CSBCE
T ss_pred CcccC
Confidence 99874
No 65
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=100.00 E-value=2.9e-32 Score=250.91 Aligned_cols=260 Identities=15% Similarity=0.133 Sum_probs=193.9
Q ss_pred ccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHH
Q 042142 49 LLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKF 128 (376)
Q Consensus 49 ~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~ 128 (376)
.+..+|+..+.+++++ |||+++..|+ +.++++||++++++++++ +.|++++..........+ ...++..+|+.|++
T Consensus 21 ~~~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~h~~ 96 (396)
T 3oft_A 21 GVEQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVM-QFIPLQQDGAEHKA 96 (396)
T ss_dssp TTTTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHH-CCTTTTCCHHHHHH
T ss_pred hhhcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCcccccc-ccCccccCCcHHHH
Confidence 4457899999999999 9999998874 588999999999999764 567766532211111111 12245667999999
Q ss_pred HHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhHHHHHHH
Q 042142 129 MKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEADEVRKL 207 (376)
Q Consensus 129 ~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~ 207 (376)
+||.+ .+.|+++.++.+.+.+.+++.++++.+.. +..+|+...+ ..++.++++. +||.+.. ....+...
T Consensus 97 ~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~----~~~~~~~~ 166 (396)
T 3oft_A 97 FRTPV-MKGLASRFVVALEPKVQAVARKLMESLRP----RGSCDFVSDFAEILPLNIFLT-LIDVPLE----DRPRLRQL 166 (396)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGG----GSEEEHHHHTTTTHHHHHHHH-HTTCCGG----GHHHHHHH
T ss_pred HHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHHH
Confidence 99997 58899999999999999999999999864 2468886555 5677888876 5886543 22333333
Q ss_pred HHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccC
Q 042142 208 VQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDE 287 (376)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~ 287 (376)
...+.. . ...+...+..+.+.+++...++++++. ...|+++.+++...+
T Consensus 167 ~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l~~ll~~~~~- 215 (396)
T 3oft_A 167 GVQLTR---P----------------DGSMTVEQLKQAADDYLWPFIEKRMAQ-----------PGDDLFSRILSEPVG- 215 (396)
T ss_dssp HHHHHS---C----------------CSSCCHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHTSCBT-
T ss_pred HHHHhC---C----------------CCHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHhhcc-
Confidence 322210 0 001223445566777777777665432 235999999976332
Q ss_pred cccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHh
Q 042142 288 SSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETL 367 (376)
Q Consensus 288 ~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtl 367 (376)
+..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++ |++|||+|+|
T Consensus 216 --~~~l~~~el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i~E~l 275 (396)
T 3oft_A 216 --GRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLRERPD------------------LIPAAADELM 275 (396)
T ss_dssp --TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCGG------------------GHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhCHH------------------hHHHHHHHHH
Confidence 33599999999999999999999999999999999999999999999975 8999999999
Q ss_pred ccCCCC
Q 042142 368 RLHPTG 373 (376)
Q Consensus 368 Rl~p~~ 373 (376)
|++|++
T Consensus 276 Rl~p~~ 281 (396)
T 3oft_A 276 RRYPTV 281 (396)
T ss_dssp HHCCCB
T ss_pred HhcCcc
Confidence 999987
No 66
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=100.00 E-value=3.7e-32 Score=252.02 Aligned_cols=265 Identities=16% Similarity=0.134 Sum_probs=194.0
Q ss_pred CCCchHHHHHHHHhcC-CeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHHH
Q 042142 51 APIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFM 129 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG-~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 129 (376)
..+|+..+.++++++| ||+++..++ +.++++||+.+++|+++ ...|++++..........+. ..++..+|+.|+++
T Consensus 37 ~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~-~~~~~~dg~~h~~~ 113 (421)
T 3lxh_A 37 EQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYRS-PERFSSRVIWVPREAGEAYD-MVPTKLDPPEHTPY 113 (421)
T ss_dssp GGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEETTCCSSSHHHHHHCC-CTTTTCCTTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHcC-hhhccCCcccCCcccccccc-cCCccCCcHHHHHH
Confidence 3578999999987766 899998876 58999999999999954 45777665322111111111 22456679999999
Q ss_pred HHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhHHHHHHHH
Q 042142 130 KKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEADEVRKLV 208 (376)
Q Consensus 130 R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~ 208 (376)
|+.+ .+.|+++.++.+.+.+.++++++++.+.. +.++|+...+ ..++.++++. +||.+.+ ....+....
T Consensus 114 R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~----~~~~~~~~~ 183 (421)
T 3lxh_A 114 RKAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFAD----RGHCEFGSEFSTVFPVRVFLA-LAGLPVE----DATKLGLLA 183 (421)
T ss_dssp HHHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTTHHHHHHHH-HHTCCGG----GHHHHHHHH
T ss_pred HHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHHHH
Confidence 9997 57899999999999999999999988753 3478975555 6688888876 4887543 223444443
Q ss_pred HHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCc
Q 042142 209 QETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDES 288 (376)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~ 288 (376)
..+... ..+.|. ...++..+..+.+.+++...++++++ . ...|+++.+++...+
T Consensus 184 ~~~~~~------~~~~p~-------~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll~~ll~~~~~-- 237 (421)
T 3lxh_A 184 NEMTRP------SGNTPE-------EQGRSLEAANKGFFEYVAPIIAARRG-------G----SGTDLITRILNVEID-- 237 (421)
T ss_dssp HHHHSC------CCSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHTT-------C----CCCSHHHHHHTSCBT--
T ss_pred HHHhcc------ccCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHhhhcc--
Confidence 333211 111111 11234455566667777776665421 1 246999999976332
Q ss_pred ccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhc
Q 042142 289 SEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLR 368 (376)
Q Consensus 289 ~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlR 368 (376)
+..++++++..+++++++||+|||+++++|++++|++||++|+|+|+|++ |++|||+|+||
T Consensus 238 -~~~l~~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i~E~lR 298 (421)
T 3lxh_A 238 -GKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMRREPL------------------KLQRGVEELFR 298 (421)
T ss_dssp -TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH------------------HHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHhCHH------------------HHHHHHHHHHH
Confidence 33599999999999999999999999999999999999999999999986 89999999999
Q ss_pred cCCCC
Q 042142 369 LHPTG 373 (376)
Q Consensus 369 l~p~~ 373 (376)
++|++
T Consensus 299 l~p~~ 303 (421)
T 3lxh_A 299 RFAVV 303 (421)
T ss_dssp HCCCB
T ss_pred hcCcc
Confidence 99997
No 67
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=100.00 E-value=1.9e-32 Score=252.09 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=184.1
Q ss_pred HHHHHHhcCCeEEEecC-Cc---cEEEccCHHHHHHHHHhCCccccCCCCc------c---cccccccCCceeEeccCCh
Q 042142 58 LHKLSIRYGPLIHLFLG-SV---PCIVACSPETAKEILKTHETSFCDRPIS------A---TVDYLTYGSADFSFAPYGP 124 (376)
Q Consensus 58 ~~~~~~~yG~i~~~~~g-~~---~~v~i~dp~~~~~il~~~~~~f~~~~~~------~---~~~~~~~~~~~~~~~~~g~ 124 (376)
+.+++++ |||+++.++ +. ++++++||+++++++.++ ..|.+++.. . .......+ .+ ++..+|+
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~g~ 94 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELV-GN-LMDYDPP 94 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCT-TC-GGGCCTT
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccc-cC-ccccCCH
Confidence 3446666 999999875 45 899999999999999332 246655431 1 01111111 23 3456799
Q ss_pred hHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHH-HHHHHHHHHHhCcccCCCchhHHH
Q 042142 125 YWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIR-LTNNVVSRMTMGQICSNNDKEADE 203 (376)
Q Consensus 125 ~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~-~~~dvi~~~~fg~~~~~~~~~~~~ 203 (376)
.|+++||.+ .+.|+.+.++.+.+.+.+++.++++.+.+ .++++|+...+.. ++.++++. +||.+++. .+.
T Consensus 95 ~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~ 165 (398)
T 1lfk_A 95 EHTRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCE-LVGVPRDD----RDM 165 (398)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGG----HHH
T ss_pred HHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHHH----HHH
Confidence 999999997 57799999999999999999999999974 2567999999887 99999997 59987642 223
Q ss_pred HHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcc
Q 042142 204 VRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDI 283 (376)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~ 283 (376)
+........ .. ....++..+..+.+.+++...++++++ . ...|+++.+++.
T Consensus 166 ~~~~~~~~~------~~------------~~~~~~~~~~~~~~~~~~~~~i~~r~~-------~----~~~dll~~ll~~ 216 (398)
T 1lfk_A 166 FMKLCHGHL------DA------------SLSQKRRAALGDKFSRYLLAMIARERK-------E----PGEGMIGAVVAE 216 (398)
T ss_dssp HHHHHHHTT------CT------------TSCHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHH
T ss_pred HHHHHHHHH------hc------------ccchHHHHHHHHHHHHHHHHHHHHHHh-------C----CCCCHHHHHHHh
Confidence 333222211 00 011133445566677777777766532 1 135999999875
Q ss_pred cccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHH
Q 042142 284 SEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALV 363 (376)
Q Consensus 284 ~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avi 363 (376)
. + ..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|++ |++|||
T Consensus 217 ~-~----~~l~~~el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~a~i 273 (398)
T 1lfk_A 217 Y-G----DDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGDEQ------------------SAQRAV 273 (398)
T ss_dssp H-G----GGSCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHSGGGGGGGSSCHH------------------HHHHHH
T ss_pred c-C----CCCCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHCHHHHHHHHhCHH------------------HHHHHH
Confidence 3 1 2589999999999999999999999999999999999999999999974 799999
Q ss_pred HHHhccCCCCC
Q 042142 364 KETLRLHPTGP 374 (376)
Q Consensus 364 kEtlRl~p~~p 374 (376)
+|+||++|++|
T Consensus 274 ~E~lRl~p~~~ 284 (398)
T 1lfk_A 274 DELIRYLTVPY 284 (398)
T ss_dssp HHHHHHHCCBS
T ss_pred HHHHHhCcccc
Confidence 99999999998
No 68
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.98 E-value=9.5e-32 Score=247.23 Aligned_cols=259 Identities=12% Similarity=0.117 Sum_probs=187.8
Q ss_pred cCCCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCcccc-C-CCCc--cccc--cccc-CCceeEecc
Q 042142 50 LAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFC-D-RPIS--ATVD--YLTY-GSADFSFAP 121 (376)
Q Consensus 50 ~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~-~-~~~~--~~~~--~~~~-~~~~~~~~~ 121 (376)
+..+++..+.++ ++||||+++++ |+.+.++++||+++++++.++ .|. + ++.. .... .+.. ...+ ++..
T Consensus 14 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 89 (396)
T 1n40_A 14 RGDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNN-MGNI 89 (396)
T ss_dssp CSSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGH-HHHH
T ss_pred cccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhh-hhhH
Confidence 456889999999 99999999997 789999999999999999865 365 4 3321 1110 0100 1122 2222
Q ss_pred CChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchh
Q 042142 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKE 200 (376)
Q Consensus 122 ~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~ 200 (376)
.|+++||.+ .+.|+++ ++.+.+.+.++++++++.+.+. ++++|+...+ ..+++|+|+. +||.+++.
T Consensus 90 ---~h~~~R~~~-~~~fs~~-~~~~~~~i~~~~~~l~~~l~~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~---- 156 (396)
T 1n40_A 90 ---ADAGLRKAV-MKAITPK-APGLEQFLRDTANSLLDNLITE---GAPADLRNDFADPLATALHCK-VLGIPQED---- 156 (396)
T ss_dssp ---HHTTCHHHH-HHHTSSC-STTHHHHHHHHHHHHHHHHHHH---CSCEETTTTTHHHHHHHHHHH-HHTCCGGG----
T ss_pred ---HHHHHHHHH-HHhhChH-HHHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHhHHHHHHH-HhCCChhh----
Confidence 899999997 4679988 9999999999999999999752 5679998665 4899999998 89987642
Q ss_pred HHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHH
Q 042142 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDML 280 (376)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~l 280 (376)
...+.......... .. ..| .++..+..+.+ +++...++ + .+ ...|+++.+
T Consensus 157 ~~~~~~~~~~~~~~---~~---~~p----------~~~~~~~~~~~-~~~~~~i~------~---~~----~~~dll~~l 206 (396)
T 1n40_A 157 GPKLFRSLSIAFMS---SA---DPI----------PAAKINWDRDI-EYMAGILE------N---PN----ITTGLMGEL 206 (396)
T ss_dssp HHHHHHTHHHHTBC---CS---SCC----------HHHHHHHHHHH-HHHHHHHH------C---TT----CCSHHHHHH
T ss_pred HHHHHHHHHHHhcc---cc---CCC----------HHHHHHHHHHH-HHHHHHHh------C---CC----CCCCHHHHH
Confidence 23344433332111 00 001 12233334444 55544443 1 11 236999999
Q ss_pred hcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHH
Q 042142 281 LDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQ 360 (376)
Q Consensus 281 l~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~ 360 (376)
++...++ ++..++++++..++.++++||+|||+++++|++++|++||++|+|+|+|++ |++
T Consensus 207 l~~~~~~-~~~~l~~~~i~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~~------------------~l~ 267 (396)
T 1n40_A 207 SRLRKDP-AYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLHEKPE------------------LIP 267 (396)
T ss_dssp HHHHTSG-GGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCGG------------------GHH
T ss_pred HHhhccc-ccCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcChHHHHHHHhCHH------------------HHH
Confidence 8753110 123589999999999999999999999999999999999999999999852 899
Q ss_pred HHHHHHhccCCCCC
Q 042142 361 ALVKETLRLHPTGP 374 (376)
Q Consensus 361 avikEtlRl~p~~p 374 (376)
|||+|+||++||+|
T Consensus 268 a~i~E~lRl~p~~~ 281 (396)
T 1n40_A 268 AGVEELLRINLSFA 281 (396)
T ss_dssp HHHHHHHHTCCCBC
T ss_pred HHHHHHHhhCCCcc
Confidence 99999999999998
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.97 E-value=2.5e-30 Score=239.76 Aligned_cols=266 Identities=13% Similarity=0.085 Sum_probs=191.9
Q ss_pred CCchHHHHHHHHhcCCeEEEec-CCccEEEccCHHHHHHHHHhCCccccCCCC---ccccc-----c-cccCCceeEecc
Q 042142 52 PIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI---SATVD-----Y-LTYGSADFSFAP 121 (376)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~-g~~~~v~i~dp~~~~~il~~~~~~f~~~~~---~~~~~-----~-~~~~~~~~~~~~ 121 (376)
.+|+..+.++.++ |||+++.. ++.+++++++++.+++++++. ..|++++. ..... . ...+ .+.++..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLD-LPNFIAM 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CC-CCCGGGC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccc-cCccccc
Confidence 5688899999876 99999987 567899999999999999875 34655431 11111 0 0111 1234567
Q ss_pred CChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchh
Q 042142 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKE 200 (376)
Q Consensus 122 ~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~ 200 (376)
+|+.|+++|+.+ .+.|+++.++.+.+.+.+.+.++++.+ ..++++|+...+ ..+++++++. +||.+....
T Consensus 115 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l----~~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~--- 185 (426)
T 3rwl_A 115 DRPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGL----PVGEEFDWVDRVSIEITTQMLAT-LFDFPFEER--- 185 (426)
T ss_dssp CTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTS----CSSSCEEHHHHTHHHHHHHHHHH-HHTCCGGGT---
T ss_pred CchHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHHHHHH-HcCCCHHHH---
Confidence 899999999996 588999999999999999999988887 345689977666 6899999986 899754422
Q ss_pred HHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHH
Q 042142 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDML 280 (376)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~l 280 (376)
..+....+.. ..... +. .....+...+..+.+.+++..+++++.+ .. ...|+++.+
T Consensus 186 -~~~~~~~~~~----~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~i~~r~~------~~----~~~dll~~l 241 (426)
T 3rwl_A 186 -RKLTRWSDVT----TAAPG----GG-----VVESWDQRKTELLECAAYFQVLWNERVN------KD----PGNDLISML 241 (426)
T ss_dssp -HHHHHHHHHH----TCCTT----SS-----SCSSHHHHHHHHHHHHHHHHHHHHHHHT------SC----CCSSHHHHH
T ss_pred -HHHHHHHHHH----HhccC----cc-----ccccHHHHHHHHHHHHHHHHHHHHHHhh------cC----CCCCHHHHH
Confidence 2232222211 11000 00 0111223334456666777776665421 11 246999999
Q ss_pred hcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHH
Q 042142 281 LDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQ 360 (376)
Q Consensus 281 l~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~ 360 (376)
++...+ ..++++++..+++++++||+|||+++++|++++|++||++|+|+++|+ +|++
T Consensus 242 l~~~~~----~~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~E~------------------~~l~ 299 (426)
T 3rwl_A 242 AHSPAT----RNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKANP------------------ALVE 299 (426)
T ss_dssp HHCGGG----GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCG------------------GGHH
T ss_pred HhcccC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCh------------------HhHH
Confidence 976322 248999999999999999999999999999999999999999999984 4999
Q ss_pred HHHHHHhccCCCCCC
Q 042142 361 ALVKETLRLHPTGPM 375 (376)
Q Consensus 361 avikEtlRl~p~~p~ 375 (376)
|||+|+||++|+++.
T Consensus 300 a~i~E~LRl~p~~~~ 314 (426)
T 3rwl_A 300 TMVPEIIRWQTPLAH 314 (426)
T ss_dssp HHHHHHHHHHCSBCC
T ss_pred HHHHHHHHhcCcccc
Confidence 999999999999875
No 70
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.97 E-value=3e-31 Score=245.36 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=191.0
Q ss_pred CCCccccccccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccccc----ccccCCc
Q 042142 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVD----YLTYGSA 115 (376)
Q Consensus 40 ~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~----~~~~~~~ 115 (376)
.+|.++. ....+|+.. ++.++|||++++..|+.. +++++++.+++|++++...+..+....... .......
T Consensus 23 ~lp~~~~--~~~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (416)
T 3p3o_A 23 DLPFLDF--TDPNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMV 97 (416)
T ss_dssp TCCBCCT--TSTTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHH
T ss_pred CCCCCCc--ccccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhc
Confidence 3444442 234567777 455679999999887666 899999999999987642221110000000 0000001
Q ss_pred eeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHH-HHHHHHHHHHHHHhCccc
Q 042142 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQIC 194 (376)
Q Consensus 116 ~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~-~~~~~~dvi~~~~fg~~~ 194 (376)
+.++..+|+.|+++||++ .+.|+++.++.+.+.+.++++++++.+ . ++++|+... ...+++++|+. +||.+.
T Consensus 98 ~~l~~~dg~~h~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~----~g~~d~~~~~~~~~~~~vi~~-l~G~~~ 170 (416)
T 3p3o_A 98 DFLQSLDGADHRRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-P----QGDFDFVQHFPHPLPALVMCQ-LLGFPL 170 (416)
T ss_dssp HSGGGCCHHHHHHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-C----SSSEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred CccccCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-c----cCCccHHHHHHHHHHHHHHHH-HhCCCH
Confidence 235567899999999997 588999999999999999999999988 3 235996554 45699999998 588754
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 042142 195 SNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPM 274 (376)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (376)
.. ...+......+... +... ......+...+..+.+.+++..+++++++. ...
T Consensus 171 ~~----~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~-----------~~~ 223 (416)
T 3p3o_A 171 ED----YDTVGRLSIETNLG---------LALS---NDQDILVKVEQGLGRMFDYLVAAIEKRKVE-----------PGD 223 (416)
T ss_dssp GG----HHHHHHHHHTTCGG---------GTTC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCS
T ss_pred HH----HHHHHHHHHHHHhh---------cccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCc
Confidence 32 22232222221110 0000 011223445556667777777777665321 235
Q ss_pred cHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCC
Q 042142 275 DLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDII 354 (376)
Q Consensus 275 dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~ 354 (376)
|+++.|++...+ + .++++++..++.++++||+|||+++++|++++|++||++|+|+++|++
T Consensus 224 dll~~ll~~~~~---~-~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~e~~--------------- 284 (416)
T 3p3o_A 224 DLTSDIVRAFHD---G-VLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQHPDQWMKIKENPE--------------- 284 (416)
T ss_dssp SHHHHHHHHHHT---T-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCGG---------------
T ss_pred cHHHHHHHhhcc---C-CCCHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHCHHHHHHHHhCHH---------------
Confidence 999999976322 1 699999999999999999999999999999999999999999999864
Q ss_pred CChhHHHHHHHHhccCCCCC
Q 042142 355 NLPYLQALVKETLRLHPTGP 374 (376)
Q Consensus 355 ~lpyl~avikEtlRl~p~~p 374 (376)
|++|||+|+||++|++|
T Consensus 285 ---~l~a~i~E~lRl~p~~~ 301 (416)
T 3p3o_A 285 ---LAPQAVEEVLRWSPTLP 301 (416)
T ss_dssp ---GHHHHHHHHHHHSCSCS
T ss_pred ---HHHHHHHHHHhhccccc
Confidence 89999999999999995
No 71
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.97 E-value=7.9e-30 Score=232.19 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=176.8
Q ss_pred chHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCC--c--cc-c--cc--cccCCceeEeccCCh
Q 042142 54 PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI--S--AT-V--DY--LTYGSADFSFAPYGP 124 (376)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~--~--~~-~--~~--~~~~~~~~~~~~~g~ 124 (376)
|+..+.++ ++||||+++ | +.++++||+++++++.++ ..|++++. . .. . .. ........++..+|+
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 74 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPP 74 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCCCh
Confidence 45667777 489999987 4 589999999999999974 46777653 1 10 0 01 110010224456799
Q ss_pred hHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhHHH
Q 042142 125 YWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEADE 203 (376)
Q Consensus 125 ~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~~~ 203 (376)
.|+++||.+ .+.|+++.++.+.+.+.++++++++.+ + .+ ++|+...+ ..+++|+|+.+ ||.+.+. ...
T Consensus 75 ~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~g-~~d~~~~~~~~~~~~vi~~~-~G~~~~~----~~~ 143 (368)
T 1io7_A 75 LHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-D---PR-EDDIVKKLAVPLPIIVISKI-LGLPIED----KEK 143 (368)
T ss_dssp HHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-C---TT-SEEHHHHTTTHHHHHHHHHH-HTCCGGG----HHH
T ss_pred HHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-h---cC-CccHHHHHHHHHHHHHHHHH-hCCCHHH----HHH
Confidence 999999997 578999999999999999999999988 3 23 69999876 78999999999 9986542 122
Q ss_pred HHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcc
Q 042142 204 VRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDI 283 (376)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~ 283 (376)
+... .... ..... -| ...++..+..+.+.+++...+ + ...|+++.+++.
T Consensus 144 ~~~~----~~~~--~~~~~-~p--------~~~~~~~~~~~~~~~~~~~~i------------~----~~~d~l~~ll~~ 192 (368)
T 1io7_A 144 FKEW----SDLV--AFRLG-KP--------GEIFELGKKYLELIGYVKDHL------------N----SGTEVVSRVVNS 192 (368)
T ss_dssp HHHH----GGGC--TTSCC-CT--------TCHHHHHHHHHHHHHHHHHHT------------T----SSCHHHHHHHTS
T ss_pred HHHH----HHHH--HhccC-Ch--------HHHHHHHHHHHHHHHHHHHHh------------C----CCCCHHHHHHhc
Confidence 2221 1111 00000 01 011223333344444444333 1 135899999864
Q ss_pred cccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHH
Q 042142 284 SEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALV 363 (376)
Q Consensus 284 ~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avi 363 (376)
.++++++.+++.++++||+|||+++++|++++|++|| +|+|+++| + |++|||
T Consensus 193 --------~l~~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P-~~~~l~~E-~------------------~l~a~i 244 (368)
T 1io7_A 193 --------NLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFN-LWQRIREE-N------------------LYLKAI 244 (368)
T ss_dssp --------SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-CHHHHHHH-T------------------CHHHHH
T ss_pred --------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCh-HHHHHHhc-c------------------hHHHHH
Confidence 3889999999999999999999999999999999999 99999999 2 799999
Q ss_pred HHHhccCCCCCC
Q 042142 364 KETLRLHPTGPM 375 (376)
Q Consensus 364 kEtlRl~p~~p~ 375 (376)
+|+||++|++|.
T Consensus 245 ~E~lRl~p~~~~ 256 (368)
T 1io7_A 245 EEALRYSPPVMR 256 (368)
T ss_dssp HHHHHHSCSBCC
T ss_pred HHHHHhCccccc
Confidence 999999999984
No 72
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.97 E-value=2.7e-29 Score=230.66 Aligned_cols=263 Identities=14% Similarity=0.153 Sum_probs=187.7
Q ss_pred CCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHHHHH
Q 042142 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFMKK 131 (376)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 131 (376)
.+|+..+.++.+ +|||+++..| .+++++++.+++++++. .|+.++..........+ .+.++..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~-~~~l~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVA-SDTALGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGG-GGSGGGCCTTHHHHHHH
T ss_pred cCccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhc-ccccccCCchHHHHHHH
Confidence 478888888876 4899987654 68999999999999754 35433211101111011 12245678999999999
Q ss_pred HHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHH
Q 042142 132 LCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSNNDKEADEVRKLVQET 211 (376)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~ 211 (376)
.+ .+.|+++.+..+.+.+.+.+.++++.+. .++++|+...+..+++++++..+||.+.+. ...+...+...
T Consensus 93 ~~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~G~~~~~----~~~~~~~~~~~ 163 (394)
T 2wiy_A 93 QT-NKWFTPKLVDGWVRTTRELVGDLLDGVE----AGQVIEARRDLAVVPTHVTMARVLQLPEDD----ADAVMEAMFEA 163 (394)
T ss_dssp HH-HTTCSHHHHHHHTHHHHHHHHHHHHTCC----TTCCEEHHHHHTHHHHHHHHHHHHTCCCCC----HHHHHHHHHHH
T ss_pred HH-HhccCHHHHHHHHHHHHHHHHHHHHHHh----ccCCeeHHHHHHhhhHHHHHHHHcCCCHhH----HHHHHHHHHHH
Confidence 96 5899999999999999999988888764 356899999999999999999999986442 22333322221
Q ss_pred HhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccc
Q 042142 212 AELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEI 291 (376)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~ 291 (376)
.... . ..|.. ...++..+..+.+.+++..+++++++ + ..+|+++.|++...+ +
T Consensus 164 ~~~~---~---~~p~~------~~~~~~~~~~~~l~~~~~~~i~~rr~-------~----~~~dll~~Ll~~~~~----~ 216 (394)
T 2wiy_A 164 MLMQ---S---AEPAD------GDVDRAAVAFGYLSARVAEMLEDKRV-------N----PGDGLADSLLDAARA----G 216 (394)
T ss_dssp HGGG---S---SSCCT------THHHHHHHHHHHHHHHHHHHHHHHHH-------S----CCSSHHHHHHHHHHT----T
T ss_pred HHhc---c---CCccc------hHHHHHHHHHHHHHHHHHHHHHHhhc-------C----CCCcHHHHHHHhhhc----C
Confidence 1100 0 01110 11122333445556666666655432 1 135899999875322 2
Q ss_pred cCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCC
Q 042142 292 KLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHP 371 (376)
Q Consensus 292 ~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p 371 (376)
.++++++.+++.++++||+|||+++++|++++|++||++|+|+++|+ +|++|||+|+||++|
T Consensus 217 ~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~e~------------------~~l~a~i~E~LRl~p 278 (394)
T 2wiy_A 217 EITESEAIATILVFYAVGHMAIGYLIASGIELFARRPEVFTAFRNDE------------------SARAAIINEMVRMDP 278 (394)
T ss_dssp SSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHCHHHHHHHHHCG------------------GGHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHCHHHHHHHHhCh------------------HhHHHHHHHHHhhCC
Confidence 48999999999999999999999999999999999999999999985 479999999999999
Q ss_pred CCCC
Q 042142 372 TGPM 375 (376)
Q Consensus 372 ~~p~ 375 (376)
|++.
T Consensus 279 p~~~ 282 (394)
T 2wiy_A 279 PQLS 282 (394)
T ss_dssp SBCE
T ss_pred CccC
Confidence 9873
No 73
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.97 E-value=1.8e-29 Score=229.66 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=177.8
Q ss_pred chHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCC-cc-cc-----c-ccccC---CceeEeccC
Q 042142 54 PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI-SA-TV-----D-YLTYG---SADFSFAPY 122 (376)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~-~~-~~-----~-~~~~~---~~~~~~~~~ 122 (376)
|+..+.++ ++||||+++. | .++++||+.+++++.++ +.|++++. .. .. . .. .+ ..+ ++..+
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-l~~~d 72 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVF-FDIPTRYT-MLTSD 72 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCC-CCCGGGSS-GGGCC
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccch-hhcccccc-cccCC
Confidence 35567777 4799999887 4 79999999999999975 46776642 11 11 1 11 12 123 34567
Q ss_pred ChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhH
Q 042142 123 GPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEA 201 (376)
Q Consensus 123 g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~ 201 (376)
|+.|+++||.+ .+.|+.+.++. +.+.+++.++++.+. | ++|+...+ ..+++|+|+. +||.+ +. .
T Consensus 73 g~~h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~-~~----~ 137 (367)
T 3b4x_A 73 PPLHDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPILVISK-MLGIN-PD----V 137 (367)
T ss_dssp TTHHHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHHHHHH-HHTCC-CC----H
T ss_pred chhHHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHHHHHH-HcCCC-Cc----H
Confidence 99999999997 57899988887 888999998888874 3 49998765 7999999999 79987 41 2
Q ss_pred HHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHh
Q 042142 202 DEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLL 281 (376)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll 281 (376)
..+......+..... ..|.. .+.. +..+.+.+++...++++++ . ...|+++.++
T Consensus 138 ~~~~~~~~~~~~~~~------~~p~~--------~~~~-~~~~~~~~~~~~~i~~r~~-------~----~~~dll~~ll 191 (367)
T 3b4x_A 138 KKVKDWSDLVALRLG------RADEI--------FSIG-RKYLELISFSKKELDSRKG-------K----EIVDLTGKIA 191 (367)
T ss_dssp HHHHHHHHHHHTTTT------STTGG--------GCCC-HHHHHHHHHHHHHHHHHTT-------T----CCSSHHHHHH
T ss_pred HHHHHHHHHHHhccC------CChhh--------HHHH-HHHHHHHHHHHHHHHHHhc-------C----CCCCHHHHHH
Confidence 334444443322111 01110 0111 3445566666666655421 1 2359999998
Q ss_pred cccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHH
Q 042142 282 DISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQA 361 (376)
Q Consensus 282 ~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~a 361 (376)
+. .++++++..++.++++||+|||+++++|++++|++ |++|+|+++|++ +|
T Consensus 192 ~~--------~ls~~el~~~~~~l~~AG~eTt~~~l~~~l~~L~~-P~~~~~l~~e~~--------------------~a 242 (367)
T 3b4x_A 192 NS--------NLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTL-YNSWDYVREKGA--------------------LK 242 (367)
T ss_dssp TS--------SSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-TTCHHHHHHHCS--------------------HH
T ss_pred hc--------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC-HHHHHHHHhCCc--------------------hH
Confidence 64 38899999999999999999999999999999999 999999999953 89
Q ss_pred HHHHHhccCCCCCC
Q 042142 362 LVKETLRLHPTGPM 375 (376)
Q Consensus 362 vikEtlRl~p~~p~ 375 (376)
||+|+||++||+|.
T Consensus 243 ~i~E~lRl~p~~~~ 256 (367)
T 3b4x_A 243 AVEEALRFSPPVMR 256 (367)
T ss_dssp HHHHHHHHSCSBCC
T ss_pred HHHHHHHhcCcccC
Confidence 99999999999984
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.97 E-value=7.6e-30 Score=230.05 Aligned_cols=232 Identities=15% Similarity=0.150 Sum_probs=166.5
Q ss_pred HhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHHHHHHHHhhcCchhh
Q 042142 63 IRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQT 142 (376)
Q Consensus 63 ~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~ 142 (376)
++||||+++ | .++++||+++++++.++ ..|.+++....... +..+ ++..+|+.|+++||.+ .+.|+.+.
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~-l~~~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGIS-FITMDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCG-GGGCCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccc-cccCCchHHHHHHHHh-hhhcCHHH
Confidence 579999976 3 89999999999999875 46777652111111 1223 3456799999999997 57899999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCcccc
Q 042142 143 LNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQ 221 (376)
Q Consensus 143 l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (376)
++.+.+.+.++++++++.+. ++|+...+ ..+++|+|+.+ ||.+.+. ...+......+.. ..
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~~----~~~~~~~~~~~~~---~~--- 132 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-------NKDIISEYAVRLPVNIISKI-LGIPDSD----MPLFKLWSDYIIG---NK--- 132 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-------TSCHHHHTTTHHHHHHHHHH-HTCCGGG----HHHHHHHHHHHHT---SC---
T ss_pred HHHHHHHHHHHHHHHHHhcc-------ccCHHHHHhhhhhHHHHHHH-cCCCHHH----HHHHHHHHHHHhh---cc---
Confidence 99999999999999888774 68998865 89999999998 9986642 2334443333221 10
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHH
Q 042142 222 DYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAF 301 (376)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~ 301 (376)
.|.+. .+ ++. +..+.+.+++..++ ..| ++.+++...+ +..++++++.++
T Consensus 133 --~p~~~-----~~-~~~-~~~~~~~~~~~~~i------------------~~d-l~~ll~~~~~---~~~l~~~ei~~~ 181 (343)
T 2rfb_A 133 --RDENF-----NY-VNN-RMVSRLLEIFKSDS------------------HGI-INVLAGSSLK---NRKLTMDEKIKY 181 (343)
T ss_dssp --CSSHH-----HH-HHH-HHHHHHHHHHHSCC------------------SSH-HHHHHTCBCS---SSBCCHHHHHHH
T ss_pred --Ccchh-----hH-HHH-HHHHHHHHHHHHHH------------------hcc-HHHHHhhhcC---CCCCCHHHHHHH
Confidence 01110 00 111 22222222221111 247 8888865322 235899999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcccCCCChhHHHHHHHHhccCCCC-CC
Q 042142 302 ILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEESDIINLPYLQALVKETLRLHPTG-PM 375 (376)
Q Consensus 302 ~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~-p~ 375 (376)
+.++++||+|||+++++|++++|++||++|+|+++|+ +|||+|+||++||+ |.
T Consensus 182 ~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~---------------------~a~i~E~lRl~p~~~~~ 235 (343)
T 2rfb_A 182 IMLLIIGGNETTTNLIGNMIRVIDENPDIIDDALKNR---------------------SGFVEETLRYYSPIQFL 235 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHCH---------------------HHHHHHHHHHSCSBCCB
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHcCc---------------------HHHHHHHHhhCcccccc
Confidence 9999999999999999999999999999999999995 99999999999998 73
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.93 E-value=4e-25 Score=203.91 Aligned_cols=276 Identities=12% Similarity=0.116 Sum_probs=177.1
Q ss_pred CCCCccccc---cccCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCccc---cccccc
Q 042142 39 MALPIIGHL---HLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAT---VDYLTY 112 (376)
Q Consensus 39 ~~~p~lG~~---~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~---~~~~~~ 112 (376)
.++|.+|-- ..+..||+..+.++.+ +|||++ .++.+..++++++.+++++++.. .|++...... ......
T Consensus 18 ~~~P~~~~dp~~~~~~~dP~~~~~~lR~-~gPV~~--~~~~~~~~vt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~~ 93 (412)
T 4dnj_A 18 AGVPHLGIDPFALDYFADPYPEQETLRE-AGPVVY--LDKWNVYGVARYAEVYAVLNDPL-TFCSSRGVGLSDFKKEKPW 93 (412)
T ss_dssp TTSCEECCCTTSHHHHHSCHHHHHHHHH-HCSSEE--ETTTTEEEECSHHHHHHHHTCTT-TEESTTCSSSSCTTTSCCS
T ss_pred CCCCccCCCCCCHHHHhCcHHHHHHHHh-cCCEEE--ECCCCEEEECCHHHHHHHHcCCc-cccCCCccccccccccccc
Confidence 467877621 2334688888888875 799985 45667899999999999998643 4443221111 111111
Q ss_pred CCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceeh-HHHHHHHHHHHHHHHHhC
Q 042142 113 GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDV-GKELIRLTNNVVSRMTMG 191 (376)
Q Consensus 113 ~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~-~~~~~~~~~dvi~~~~fg 191 (376)
...+.++..+|+.|+++||.+ .+.|+++.++++.+.+.+.+.++++.+... ++++|+ .+....+++++++.+. |
T Consensus 94 ~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~---~~~~D~v~~~~~~~~~~~i~~l~-g 168 (412)
T 4dnj_A 94 RPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLAR---GGNIDAIADLAEAYPLSVFPDAM-G 168 (412)
T ss_dssp SCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEETCCCCCCHHHHHHHHHHH-T
T ss_pred cCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhcc---CCCceeHHHHHhhhhHhHHHHHc-C
Confidence 112345567899999999996 588999999999999999999999988652 456775 5566678888887764 4
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 042142 192 QICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDY 271 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 271 (376)
......+ .+......+...... . .. ..+.... . .......+.+..++ ..
T Consensus 169 ~~~~~~~----~~~~~~~~~~~~~~~---~---~~--------~~~~~~~---~-~~~~~~~~~~~~~~-----~~---- 217 (412)
T 4dnj_A 169 LKQEGRE----NLLPYAGLVFNAFGP---P---NE--------LRQSAIE---R-SAPHQAYVAEQCQR-----PN---- 217 (412)
T ss_dssp CCSTTGG----GHHHHHHHHHHHTSC---S---SH--------HHHHHHH---T-CHHHHHHHHHHTSG-----GG----
T ss_pred Cchhhhh----hhhhhhhcccccccc---c---HH--------HHHHHHH---H-HHHHHHHHHHHHHh-----hc----
Confidence 4322211 111111111111110 0 00 0000001 0 11111111111111 11
Q ss_pred CcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhhhhCCCCCCCcc
Q 042142 272 APMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDSVVGKSRLVEES 351 (376)
Q Consensus 272 ~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~v~~~~~~~~~~ 351 (376)
...|.+..++....+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 218 ~~~~~~~~l~~~~~~---~~~l~~~e~~~~~~~l~~AG~eTTa~~l~~~~~~L~~~P~~~~~Lr~~-------------- 280 (412)
T 4dnj_A 218 LAPGGFGACIHAFSD---TGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFPDEFARLRAD-------------- 280 (412)
T ss_dssp SCTTSHHHHHHHTTT---TTSSCTTHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHCHHHHHHHHHC--------------
T ss_pred cccccchhhhHhhhh---ccchhHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhCHHHHHHHHhC--------------
Confidence 112444444443222 345899999999999999999999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHhccCCCCCC
Q 042142 352 DIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 352 ~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
..|+.+|++|++|++|+++.
T Consensus 281 ----~~~~~~~~eE~lR~~pp~~~ 300 (412)
T 4dnj_A 281 ----PSLARNAFEEAVRFESPVQT 300 (412)
T ss_dssp ----GGGHHHHHHHHHHHHCSBCE
T ss_pred ----ccccccccceeeeecCCccc
Confidence 35788999999999999874
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.88 E-value=3.2e-21 Score=177.67 Aligned_cols=250 Identities=13% Similarity=0.107 Sum_probs=164.5
Q ss_pred CCCchHHHHHHHHhcC-CeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcccccccccCCceeEeccCChhHHHH
Q 042142 51 APIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISATVDYLTYGSADFSFAPYGPYWKFM 129 (376)
Q Consensus 51 ~~~~~~~~~~~~~~yG-~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 129 (376)
..+++..+.++.++.+ +++..-.++ ..-++++++.+++++++. ..|++......... ...........+|++|+++
T Consensus 36 ~~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~~-~~~~~~~~~~~D~p~H~r~ 112 (417)
T 4dxy_A 36 EDGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEVIFLPKEA-GEKAQMVPTKMDPPEHTPY 112 (417)
T ss_dssp GGCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSCCSSSTTS-SCSSCTTTTTCCTTTHHHH
T ss_pred hcChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCCccccccc-ccccccCcccCCcHHHHHH
Confidence 3567888888877654 455443343 456789999999999864 35655432211111 1111122345689999999
Q ss_pred HHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HHHHHHHHHHHHhCcccCCCchhHHHHHHHH
Q 042142 130 KKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSNNDKEADEVRKLV 208 (376)
Q Consensus 130 R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~ 208 (376)
||++ ++.|+++.++++.+.+.+.++++++.+.. ++++|+...+ ..+++.+++. ++|.... ....+....
T Consensus 113 Rrll-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~----~g~~D~v~~~a~~l~~~vi~~-llg~~~~----d~~~~~~~~ 182 (417)
T 4dxy_A 113 RKAL-DKGLNLAKIRKVEDKVREVASSLIDSFAA----RGECDFAAEYAELFPVHVFMA-LADLPLE----DIPVLSEYA 182 (417)
T ss_dssp HHHH-HHHHCHHHHHTTHHHHHHHHHHHHHHHHT----TSEEEHHHHTTTTHHHHHHHH-HTTCCGG----GHHHHHHHH
T ss_pred HHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCeeeHHHHHhhhHHHHHHH-HcCCCHH----HHHHHHhhh
Confidence 9997 58899999999999999999999998864 3568875544 4566777765 4675433 223333332
Q ss_pred HHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccHHHHHhcccccCc
Q 042142 209 QETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQEARKINKERGKDYAPMDLLDMLLDISEDES 288 (376)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dll~~ll~~~~~~~ 288 (376)
..+. .... ..+ ....+...+..+.+..++..++++++ .. ..+|+++.|+....+
T Consensus 183 ~~~~----~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~li~~rr-------~~----~~ddl~s~L~~~~~~-- 236 (417)
T 4dxy_A 183 RQMT----RPEG--NTP-------EEMATDLEAGNNGFYAYVDPIIRARV-------GG----DGDDLITLMVNSEIN-- 236 (417)
T ss_dssp HHHH----SCCC--SSH-------HHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----CCCSHHHHHHTCEET--
T ss_pred hhhc----cccc--cCh-------HHHHHHHHHHHHHHHHHHHHHHHHHh-------cC----Cccchhhhhcccccc--
Confidence 2221 1000 000 01122333444555556555554432 11 246899999876432
Q ss_pred ccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHhh
Q 042142 289 SEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEIDS 340 (376)
Q Consensus 289 ~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~~ 340 (376)
+..++++++..++..+++||+|||+++++|++++|++||++++++++|.+.
T Consensus 237 -~~~~~~~e~~~~~~~ll~AG~eTTa~~l~~~~~~L~~~P~~~~~l~~e~~~ 287 (417)
T 4dxy_A 237 -GERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELRSDPLK 287 (417)
T ss_dssp -TEECCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHHHHHCHHH
T ss_pred -CCccchhHHHHHHHHHHhhcccchhhHHHHHHHHHHhCchhhhhhccCccc
Confidence 346899999999999999999999999999999999999999999998543
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.79 E-value=9.5e-22 Score=177.74 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=138.5
Q ss_pred CCCC-CCCCCccccccc-----cCCCchHHHHHHHHhcCCeEEEecCCccEEEccCHHHHHHHHHhCCccccCCCCcc--
Q 042142 34 LPPS-PMALPIIGHLHL-----LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-- 105 (376)
Q Consensus 34 ~ppg-p~~~p~lG~~~~-----~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~dp~~~~~il~~~~~~f~~~~~~~-- 105 (376)
+||| ++++|++|+... +..+|+..+.+++++ ||+++. .+.+++++++.+++|+.+. .|++++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCcccccc
Confidence 4667 447899997633 456899999999976 998754 4689999999999999863 566543211
Q ss_pred cc-----cccccCCceeEeccCChhHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHHHhhcCCCceehHHHH-HH
Q 042142 106 TV-----DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIRRFMQLMLKKAKASEAVDVGKEL-IR 179 (376)
Q Consensus 106 ~~-----~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~-~~ 179 (376)
.. .....+ .+ +...+|+.| .+.|+ . .+.+++.++++++.+. +++|+...+ ..
T Consensus 108 ~~~~~~~~~~~~~-~~-l~~~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~------g~~Dl~~~~a~~ 165 (381)
T 2yjn_B 108 WMRAAGAPPAEWA-QP-FRDVHAASW--------EGEVP-----D-VGELAESFAGLLPGAG------ARLDLVGDFAWQ 165 (381)
T ss_dssp HHHHHTCCHHHHT-HH-HHHHHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC------------CCCCCCTH
T ss_pred cccccccccchhh-hh-hhhCCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc------CcchHHHHHHHH
Confidence 00 000011 12 334568888 35566 3 7888899998888875 368888665 69
Q ss_pred HHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhhhcCccccchhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042142 180 LTNNVVSRMTMGQICSNNDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDNMMERIIKEHQE 259 (376)
Q Consensus 180 ~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (376)
+++++|+.+ ||.+.+.. .....+... .. + .+... ...+. .
T Consensus 166 l~~~vi~~l-~G~~~~~~--------~~~~~~~~~------~~---~--~~~~~----~~~~~---------------~- 205 (381)
T 2yjn_B 166 VPVQGMTAV-LGAAGVLR--------GAAWDARVS------LD---A--QLSPQ----QLAVT---------------E- 205 (381)
T ss_dssp HHHHHHHTC------CCH--------HHHHHHTTH------HH---H--TTSCC----CHHHH---------------H-
T ss_pred HHHHHHHHH-cCCCHHHH--------HHHHHHHHh------cc---C--CCCHH----HHHHH---------------H-
Confidence 999999995 99876521 111111100 00 0 00000 00000 0
Q ss_pred HHHhhhccCCCCCcccHHHHHhcccccCcccccCCHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhhChHHHHHHHHHHh
Q 042142 260 ARKINKERGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAAGTDTSAITVEWALAELINHPDMMKKAREEID 339 (376)
Q Consensus 260 ~~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~l~~~~l~~~~~~~~~aG~dTTa~~l~~~l~~L~~~P~v~~~l~~Ei~ 339 (376)
+.++.++ + ++++.+++||+|||+++++|++++|++||++++++++|++
T Consensus 206 ---------------~~~~~l~-------------~----~~~~~ll~aG~eTt~~~l~~~l~~L~~~P~~~~~l~~e~~ 253 (381)
T 2yjn_B 206 ---------------AAVAALP-------------A----DPALRALFAGAEMTANTVVDAVLAVSAEPGLAERIADDPA 253 (381)
T ss_dssp ---------------HHHHHCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
T ss_pred ---------------HHHHHHH-------------H----HHHHHHHHHhhhHHHHHHHHHHHHHHHCHHHHHHHhhCHH
Confidence 0001010 0 5678899999999999999999999999999999999853
Q ss_pred hhhCCCCCCCcccCCCChhHHHHHHHHhccCCCCCC
Q 042142 340 SVVGKSRLVEESDIINLPYLQALVKETLRLHPTGPM 375 (376)
Q Consensus 340 ~v~~~~~~~~~~~l~~lpyl~avikEtlRl~p~~p~ 375 (376)
|+++||+|+||++|+++.
T Consensus 254 ------------------~l~~~i~E~LR~~pp~~~ 271 (381)
T 2yjn_B 254 ------------------AAQRTVAEVLRLHPALHL 271 (381)
T ss_dssp --------------------HHHHHHHHHHSCSCSE
T ss_pred ------------------HHHHHhCeeeeecCCCcc
Confidence 999999999999999874
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.17 E-value=2.5 Score=29.04 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=44.0
Q ss_pred CccccccccCC--CchHHHHHHHHhc-CCeEEEecCCccEEEccCHHHHHHHHHh-CCccccCCCC
Q 042142 42 PIIGHLHLLAP--IPHQALHKLSIRY-GPLIHLFLGSVPCIVACSPETAKEILKT-HETSFCDRPI 103 (376)
Q Consensus 42 p~lG~~~~~~~--~~~~~~~~~~~~y-G~i~~~~~g~~~~v~i~dp~~~~~il~~-~~~~f~~~~~ 103 (376)
-.++|+..-.. .....+.+++.+| |+|..+ .||.-.|...+.+.++..+.. ++..+.+|+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 34788765322 1234588999999 599988 578899999999999999863 4444555554
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=80.19 E-value=7.3 Score=25.39 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=38.0
Q ss_pred ccccccccCCC----chHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPI----PHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~----~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||++.-..+ ....+.+++.+||+|..+.+. |.-.|-..+++.++.++.. ++..+.+
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 45666433222 236788999999999888764 2345666799999998874 3334433
No 80
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=73.24 E-value=15 Score=25.68 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=42.0
Q ss_pred CCCCCCCCCccccccccCCCchHHHHHHHHhcCCeEEEec---C---CccEEEccCHHHHHHHHHh-CCccc
Q 042142 34 LPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL---G---SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 34 ~ppgp~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~---g---~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
.||.|...=++||+..- -....+.+++.+||+|..+.+ + |.-.|-..+++.++.++.. ++..+
T Consensus 3 ~~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYK--ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp CCTTCCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45555555577776532 224668899999999988876 2 2346677789999888873 44333
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.76 E-value=11 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=37.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHhCCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
++||+..- -....+.+++++||+|..+.+. |.-.|...+++.++.++..++..+.
T Consensus 15 fV~~Lp~~--~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~ 77 (103)
T 1s79_A 15 YIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYK 77 (103)
T ss_dssp EEECCCTT--CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCT
T ss_pred EEECCCCC--CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEEC
Confidence 45665422 2246788999999999877653 2345677799999999985444443
No 82
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=68.14 E-value=19 Score=24.80 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=40.2
Q ss_pred CccccccccCCC----chHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPI----PHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~----~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=++||+..-... ....+.+++.+||+|..+.+. |.-.|-..+++.++.++.. ++..+.+
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 467887643222 346788999999999888764 3345666788888888874 4444443
No 83
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=65.39 E-value=15 Score=23.26 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHhCCcccc
Q 042142 55 HQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
...+.++.++||+|..+.+. +.-.|-..+++.++.++..++..+.
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 66 (75)
T 1iqt_A 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66 (75)
T ss_dssp HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBT
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeEC
Confidence 46788999999999877763 1235666789999998876544443
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=60.25 E-value=21 Score=22.45 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCCccccC
Q 042142 55 HQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCD 100 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~~~f~~ 100 (376)
.+.+.++.++||+|..+.+.. .-.|-..+++.++.++..++..+.+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 67 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC
Confidence 467888999999998776531 2346667899999988754444433
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=55.15 E-value=26 Score=23.85 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 56 QALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 56 ~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
..+.+++.+||+|..+.+. |.-.|-..+++.++.++.. ++..+
T Consensus 27 ~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 27 KALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 5688899999999988763 2345777799999998863 34334
No 86
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=53.10 E-value=17 Score=25.31 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=39.8
Q ss_pred CCCCCCccccccc---cCCCchHHHHHHHHhcCCeEEEecC----------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 37 SPMALPIIGHLHL---LAPIPHQALHKLSIRYGPLIHLFLG----------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 37 gp~~~p~lG~~~~---~~~~~~~~~~~~~~~yG~i~~~~~g----------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
.|...=++.|+.. +..+....+.+.+++||+|..+.+. |.-.|-..+++.+...... ++..|.+|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3444456666642 2233457788889999999887652 1234566788888888753 45555443
No 87
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=52.72 E-value=44 Score=23.34 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=39.9
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--CccEEEccCHHHHHHHHHh-CCccccCCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--SVPCIVACSPETAKEILKT-HETSFCDRP 102 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--~~~~v~i~dp~~~~~il~~-~~~~f~~~~ 102 (376)
++||+..- -..+.+.+++++||+|..+.+. +.-.|...+++.++.++.. ++..+.++.
T Consensus 20 ~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 20 VVSGLPPS--GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEECCSS--CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 56776532 1245688899999999888764 4556777899999998873 444554443
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=52.36 E-value=35 Score=22.95 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHH
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILK 92 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~ 92 (376)
|=++||+..- --...+.+++.+||+|..+++. |.-.|-..+++.++...+
T Consensus 9 wL~VgNL~~~--~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLTAQ--IDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCCTT--CCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCCcc--CCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 4567887432 1236899999999999888763 334556667766666654
No 89
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=50.02 E-value=51 Score=21.97 Aligned_cols=58 Identities=16% Similarity=0.357 Sum_probs=39.3
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
++||+..- .-....+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 14 ~V~nlp~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 14 FIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp EEESSTTS-CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 56776520 12246788999999999887763 3456677799999999874 44444443
No 90
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.99 E-value=61 Score=22.43 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=38.9
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh-CCccccCCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFCDRP 102 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~-~~~~f~~~~ 102 (376)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.+++
T Consensus 14 ~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 14 LAKNLPA--GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 4555532 12346788999999999888863 3456667799999988863 444454443
No 91
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=49.87 E-value=37 Score=23.73 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=38.0
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=++||+..- --.+.+.+++.+||+|..+.+. |.-.|-..+++.++.++.. ++..+.+
T Consensus 8 lfV~nLp~~--~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 8 IFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EEECCCCCC--CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356776422 1246788999999999877652 1236777899999999864 4444433
No 92
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=49.73 E-value=27 Score=23.78 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=36.0
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-----Cc----cEEEccCHHHHHHHHHh-CCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-----SV----PCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-----~~----~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
++||++.- -..+.+.+++++||+|..+.+. +. -.|-..+++.++.++.. ++..+.
T Consensus 23 fV~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 23 IVNYLPQN--MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 56666422 1246788999999999877652 11 24666799999988864 443443
No 93
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=47.70 E-value=39 Score=22.31 Aligned_cols=47 Identities=13% Similarity=0.320 Sum_probs=33.3
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHH
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKE 89 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~ 89 (376)
.=++|++..- -..+.+.+++++||+|..+.+. |.-.|-..+++.++.
T Consensus 13 ~l~V~~Lp~~--~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 13 KVFVGRCTED--MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp EEEEESCCTT--CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH
Confidence 4466776432 1246788999999999988875 345677778888874
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=46.86 E-value=77 Score=22.70 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
.=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 48 ~l~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 48 CLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CBCEETCTTS--CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456666432 2246788999999999887762 1235666799999999874 4444433
No 95
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=46.73 E-value=58 Score=22.09 Aligned_cols=56 Identities=11% Similarity=0.200 Sum_probs=37.0
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 27 ~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 27 FVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred EEeCCCCC--CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 55665432 2346788999999999887762 1235666799999998874 4444433
No 96
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=45.90 E-value=30 Score=22.56 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=35.1
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHhCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKTHE 95 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~~~ 95 (376)
=++||+..- -....+.++.++||+|..+.+. +.-.|-..+++.++.++..++
T Consensus 14 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 14 MFVGGLSWD--TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp EEEECCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 356776422 2346788999999999877652 123556678888888886543
No 97
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.87 E-value=67 Score=21.40 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=34.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~ 93 (376)
+++|+..- -....+.+++.+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 12 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 12 FVRNLSYT--SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEECCCTT--CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 45665422 22467889999999998887732 235667799999999853
No 98
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.69 E-value=59 Score=21.65 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=36.8
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
++||+ .-....+.+++++||+|..+.++ +.-.|-..+++.++.++.. ++..+
T Consensus 19 ~V~n~----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 19 YVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp EEECS----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred EEcCC----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 56773 23356788999999999888875 3345666799999999864 33333
No 99
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=43.17 E-value=57 Score=22.04 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=38.2
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHh-CCcccc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. +...+.
T Consensus 14 l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 14 LFVRNLANT--VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp EEEECCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 356666422 2246788999999999888764 3445666799999999874 444443
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.15 E-value=69 Score=21.08 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=38.9
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCccccCCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~~~~ 102 (376)
=+++|+..- -....+.++.++||+|..+.+.. .-.|-..+++.++.++.. ++..+.++.
T Consensus 8 l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 8 LYVGSLHFN--ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 355666422 23467889999999998877632 235667799999999873 444454443
No 101
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=42.34 E-value=53 Score=22.64 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeEEEecC-----------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 56 QALHKLSIRYGPLIHLFLG-----------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 56 ~~~~~~~~~yG~i~~~~~g-----------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
..+.+.+.+||+|..+.+. |.-.|-..+++.++..+.. ++..|.+|
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 4577888999999988864 2235666789888888753 45555444
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=41.57 E-value=76 Score=21.14 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=35.6
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEE--------EecC---------CccEEEccCHHHHHHHHHh-CCcccc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIH--------LFLG---------SVPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~--------~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
=++||+..- -..+.+.+++++||+|.. +.+. |.-.|...+++.++.++.. ++..+.
T Consensus 16 l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 16 IFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp EEEECCCSS--CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred EEEeCCCCC--CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 366776432 224678899999999866 4431 1235666789999888863 444443
No 103
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=41.32 E-value=65 Score=22.17 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=35.6
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHE 95 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~ 95 (376)
++||+..- -....+.+++++||+|..+.+.. .-.|...+++.++.++...+
T Consensus 29 fV~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 29 FIGGLSWQ--TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp EEESCCTT--CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEeCCCCC--CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 56665421 22467889999999998877632 23666779999999987543
No 104
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.06 E-value=79 Score=21.16 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=38.0
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=+++|+..- -....+.+++++||+|..+.+.. .-.|-..+++.++.++.. ++..+.++
T Consensus 15 l~v~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 15 LFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 356666422 23467889999999998777632 235666799999999853 44444443
No 105
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.96 E-value=40 Score=22.82 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=32.4
Q ss_pred chHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHhCCcccc
Q 042142 54 PHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
....+.+...+||.+..+++. ++-.|-..|.+.+..++.-++..+.
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~ 74 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELL 74 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEET
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeC
Confidence 345577778889999988864 4445666699998888875554443
No 106
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=40.78 E-value=48 Score=21.53 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCCcccc
Q 042142 55 HQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
...+.++.++||+|..+.+.. .-.|-..+++.++.++.-++..+.
T Consensus 20 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~ 73 (89)
T 3ucg_A 20 AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 73 (89)
T ss_dssp HHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET
T ss_pred HHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC
Confidence 467889999999998776521 235666788888888854444443
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=40.59 E-value=61 Score=23.30 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=37.7
Q ss_pred CccccccccCC--CchHHHHHHHHhcCCeEEEecC------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAP--IPHQALHKLSIRYGPLIHLFLG------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~--~~~~~~~~~~~~yG~i~~~~~g------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=++||+..-.. +....+.+++.+||+|..+.+. |.-.|...+++.+..++.. ++..+.++
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 36677653211 1122466789999999887762 3456777799999998864 34444444
No 108
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.49 E-value=57 Score=21.71 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=37.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC------------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG------------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g------------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 9 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 9 FIKNLNFS--TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 55665422 2246788999999999777653 1335667799999999874 4444433
No 109
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=40.34 E-value=27 Score=24.71 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=42.0
Q ss_pred CCCCCCCCccccccccCC--C------chHHHHHHHHhcCCeEEEecC-----CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 35 PPSPMALPIIGHLHLLAP--I------PHQALHKLSIRYGPLIHLFLG-----SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 35 ppgp~~~p~lG~~~~~~~--~------~~~~~~~~~~~yG~i~~~~~g-----~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
||.|...=+|.|+..... + ..+.+.+.+.+||+|..+.+. |.-.|-..+++.++..+.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 556666556666643321 1 123567788999999887763 3456667789888888763 4445544
Q ss_pred C
Q 042142 101 R 101 (376)
Q Consensus 101 ~ 101 (376)
|
T Consensus 83 R 83 (114)
T 3s6e_A 83 K 83 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 110
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.30 E-value=82 Score=21.14 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=38.8
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 16 l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 16 LKVDNLTYR--TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 356766432 2246788999999999888763 2345667788999888873 44444443
No 111
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=40.16 E-value=22 Score=16.74 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q 042142 329 DMMKKAREEIDS 340 (376)
Q Consensus 329 ~v~~~l~~Ei~~ 340 (376)
..|.|+|+|+++
T Consensus 8 nlqkkirkelkq 19 (26)
T 1m46_B 8 NLQKKIRKELKQ 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999865
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=40.01 E-value=53 Score=22.06 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 55 HQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
...+.++.++||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 14 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 14 KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 46788999999999777653 3346667899999998873 33344443
No 113
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.13 E-value=84 Score=20.90 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=39.3
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHhCCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKTHETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~~~~~f~~~ 101 (376)
=++||+..- -....+.+++.+||+|..+.+. +.-.|-..+++.++.++..++..+.++
T Consensus 13 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 79 (99)
T 2dgs_A 13 IFVGGIPHN--CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 79 (99)
T ss_dssp EEEESCCSS--CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCe
Confidence 356666422 2246788999999999887763 123566779999999987555555444
No 114
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.06 E-value=77 Score=21.62 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHHHHHh
Q 042142 55 HQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~il~~ 93 (376)
...+.+++.+||+|..+.+. |.-.|...+++.++.++..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 46799999999999888773 2346677799999999876
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=38.69 E-value=86 Score=20.92 Aligned_cols=50 Identities=18% Similarity=0.400 Sum_probs=35.5
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- .-....+.+++.+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 26 ~V~nLp~~-~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 26 FIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEESCCSS-CCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 56776420 11246788999999999888774 3455667799999998873
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=38.69 E-value=70 Score=21.15 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=36.3
Q ss_pred CccccccccCCCchHHHH----HHHHhcCCeEEEecC------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 42 PIIGHLHLLAPIPHQALH----KLSIRYGPLIHLFLG------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~----~~~~~yG~i~~~~~g------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
=++||+..-. ....+. ++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 11 l~V~nLp~~~--~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 11 IYINNLNEKI--KKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp EEEESCCTTS--CHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567764321 123344 899999999888764 4456777899999998864 44333
No 117
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.49 E-value=76 Score=20.82 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=34.4
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-----C----ccEEEccCHHHHHHHHHh
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-----S----VPCIVACSPETAKEILKT 93 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-----~----~~~v~i~dp~~~~~il~~ 93 (376)
=+++|+..- -....+.++.++||+|..+.+. + .-.|-..+++.++.++..
T Consensus 18 l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 18 LGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp EEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 356666432 2246788999999999877662 1 235666799999998874
No 118
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=38.06 E-value=58 Score=20.71 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 55 HQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
...+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 46788899999999877652 1236677799999998874 44334
No 119
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.02 E-value=65 Score=21.67 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=36.8
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHH-hCCccc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILK-THETSF 98 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~-~~~~~f 98 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++. -++..+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cqi_A 18 LYVGNLSRD--VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI 80 (103)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred EEEeCCCcc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc
Confidence 356666422 2346788999999999877653 233566779999999887 344334
No 120
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=37.99 E-value=49 Score=23.32 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHhCCccccC
Q 042142 55 HQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKTHETSFCD 100 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~~~~~f~~ 100 (376)
...+.+++.+||+|..+.+. +.-.|...+++.++.++.-++..+.+
T Consensus 50 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 50 AQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp HHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 46788999999999877652 12356677999999998444444433
No 121
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.86 E-value=53 Score=22.72 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=33.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHhCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKTHE 95 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~~~ 95 (376)
++||+..- -....+.+++.+||+|..+.+. +.-.|-..+++.++.++.-++
T Consensus 29 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 29 FCMQLAAR--IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp EEESCCTT--CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 45555321 1246788999999999888763 123556668888888774343
No 122
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=37.70 E-value=87 Score=21.80 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=38.0
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 11 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 11 FIGGLNRE--TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp EEECCTTT--CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45665422 2346788999999998777653 2345667799999999874 44445444
No 123
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=37.31 E-value=81 Score=20.23 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=36.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC----------CccEEEccCHHHHHHHHHh-CCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----------SVPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----------~~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.
T Consensus 8 ~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 8 HIGRLTRN--VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp EEECCCTT--CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 45555321 1246788899999999887762 2335667799999999874 444443
No 124
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=37.25 E-value=85 Score=20.43 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=37.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
++||+.. .-....+.++.++||+|..+.+- +.-.|-..+++.++.++.. ++..+.++
T Consensus 12 ~V~nlp~--~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 12 FVRNLPF--DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EECSCCT--TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 5566642 22346788999999999877653 2235666789999998874 44444443
No 125
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=37.07 E-value=95 Score=21.14 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=36.8
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
++||+..- -....+.++.++||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 30 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 30 FVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 56665432 2246788999999999888763 2345667799999998873 44333
No 126
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=36.88 E-value=76 Score=22.14 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=38.0
Q ss_pred CccccccccCCCchHHHHHHHHhcC-CeEEEecC-----CccEEEccCHHHHHHHHHh-CCcccc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLG-----SVPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG-~i~~~~~g-----~~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
=++||+..- -..+.+.+++++|| +|..+.+. |.-.|-..+++.++..+.. ++..+.
T Consensus 31 l~VgnLp~~--~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 31 ITMKNLPEG--CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp EEEECSSCC--CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred EEEECCCCC--CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356776422 23567899999999 78776663 4456777899999998864 333343
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=36.53 E-value=67 Score=22.10 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=36.8
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
++||+..- -....+.+++++||+|..+.+. |.-.|-..+++.++.++.. ++..+
T Consensus 35 ~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 35 FVRPFPLD--VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp EECSSCTT--CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEECCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45665321 1246788999999999777663 4556677799999998864 44444
No 128
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.27 E-value=90 Score=21.28 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=37.3
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh-CCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
++||+..- -....+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.
T Consensus 29 ~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 29 YCGGIASG--LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp EEECCSSC--CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 55666421 2346788999999999887763 3456677799999998853 443443
No 129
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.78 E-value=82 Score=21.77 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=37.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
+++|+..- -..+.+.+++++||+|..+.+.. .-.|-..+++.++.++......+.
T Consensus 21 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 84 (116)
T 2cqd_A 21 FVGGLPYH--TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIID 84 (116)
T ss_dssp EEECCCSS--CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEET
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCC
Confidence 56666422 22467889999999998877642 235667799999999875433343
No 130
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=35.71 E-value=60 Score=23.58 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=34.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC-----ccEEEccCHHHHHHHHH
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-----VPCIVACSPETAKEILK 92 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~v~i~dp~~~~~il~ 92 (376)
++||+.. .--.+.+.+++.+||+|..+.+.. .-.|...+++.++....
T Consensus 32 ~V~NL~~--~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~ 84 (130)
T 3zzy_A 32 IVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 84 (130)
T ss_dssp EEESCCS--CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHH
T ss_pred EECCCCC--CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Confidence 4777642 223467899999999998877632 25677788888888875
No 131
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=35.57 E-value=86 Score=23.85 Aligned_cols=54 Identities=15% Similarity=0.323 Sum_probs=37.1
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-----CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-----SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-----~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
++||+.. .-..+.+.+++.+||+|-.+.+. +.-.|-..|++.++..... ++..+
T Consensus 50 ~VgNL~~--~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCS--CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4677642 22346789999999999887763 2346777799999888874 34334
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.57 E-value=51 Score=20.60 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCC
Q 042142 55 HQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHE 95 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~ 95 (376)
...+.++.++||+|..+.+.. .-.|-..+++.++.++....
T Consensus 14 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 14 QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 456888999999987665421 22445567888888876543
No 133
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=35.15 E-value=1.2e+02 Score=21.33 Aligned_cols=59 Identities=12% Similarity=0.228 Sum_probs=39.7
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccCCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~~~ 102 (376)
=++||+..- -....+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.++.
T Consensus 25 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 25 LFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 356665422 2346788999999999888763 2346777899999999863 555554443
No 134
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=35.01 E-value=65 Score=21.21 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=35.9
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC--------ccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
+++|+..- -....+.++.++||+|..+.+.. .-.|-..+++.++.++.. ++..+
T Consensus 20 ~v~nlp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 20 FVGNLEAR--VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred EEECCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 55665422 22467889999999998877632 235666789999988873 44333
No 135
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=34.73 E-value=69 Score=21.72 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=35.5
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
+++|+..- -....+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 33 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 33 LVSNLDFG--VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 56665422 2246788999999999776653 1235666799999998874 44333
No 136
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.48 E-value=1e+02 Score=20.77 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=36.8
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC----------CccEEEccCHHHHHHHHHhCCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----------SVPCIVACSPETAKEILKTHETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----------~~~~v~i~dp~~~~~il~~~~~~f~~ 100 (376)
=++||+..- -....+.+++++|| |..+.+. +.-.|-..+++.++.++.-+...+.+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 83 (104)
T 1wi8_A 18 AFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 83 (104)
T ss_dssp EEEESCCSS--CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETT
T ss_pred EEEeCCCCc--CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCC
Confidence 356776422 22467889999999 8888763 12356677999999998544444433
No 137
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=34.43 E-value=72 Score=22.57 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=37.1
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+ .-....+.+++++||+|..+.++ +.-.|...+++.++.++.. ++..+.+
T Consensus 43 fVgnl----~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 43 YVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp EEECS----SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred EEcCC----CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56763 23356789999999999877764 3445667799999998854 4444433
No 138
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.37 E-value=46 Score=22.94 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=35.1
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
++||+..- -..+.+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 33 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 33 HVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp EEESCCTT--CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred EEECCCCc--CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45665321 2246788999999998777653 2345666788888888863 34333
No 139
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.80 E-value=1.1e+02 Score=20.53 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=37.8
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|...+++.++.++.. ++..+.+
T Consensus 18 l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 18 LHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp EEEESCCTT--CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356766422 2246788999999999887763 2345666799999999864 4444433
No 140
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.45 E-value=1.1e+02 Score=20.40 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=36.7
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 20 l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 20 LFISGLPFS--CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356666422 2246788999999999877663 2345667799999998854 44334
No 141
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.40 E-value=1e+02 Score=21.93 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=35.5
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHH
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILK 92 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~ 92 (376)
.=++||+..- -....+.+++++||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 33 ~LfVgNLp~~--vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 33 VIHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp EEEEESCCTT--CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3466776532 2246788999999999877653 345667778998888876
No 142
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.30 E-value=1.1e+02 Score=21.20 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=35.5
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHH
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILK 92 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~ 92 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++..+.
T Consensus 19 LfV~nLp~~--vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 19 IHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EEECSCCTT--SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 456776432 1245788999999999888763 345677779999998887
No 143
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.10 E-value=1.1e+02 Score=20.51 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=39.2
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=++||+..- -....+.+++++||+|..+.+.. .-.|-..+++.++.++.. ++..+.++
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 18 VYVGGLDEK--VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp EEEECCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 356766432 23467889999999998887632 235667799999999974 44444433
No 144
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.97 E-value=83 Score=21.10 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=33.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~ 93 (376)
++||+.. .-....+.+++++||+|..+.+. +.-.|-..+++.++.++..
T Consensus 12 ~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIPY--EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEESCCT--TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEeCCCC--cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4555542 12246788999999998776652 2235667799999999864
No 145
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.94 E-value=32 Score=23.88 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=37.7
Q ss_pred CccccccccCCCchHHHH---HHHHhcCCeEEEecC------------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALH---KLSIRYGPLIHLFLG------------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~---~~~~~yG~i~~~~~g------------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=++||+..-. ..+.+. +++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 18 l~V~nLp~~~--~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 18 VFVVGLSQRL--ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp EEEEEECTTT--CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEECCCCCC--CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3567765321 234566 889999999877653 1335666799999999875 55445443
No 146
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.78 E-value=92 Score=21.32 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHH
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILK 92 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~ 92 (376)
.=++||+..- -....+.+++++||+|..+.+. +.-.|-..+.+.++.++.
T Consensus 17 ~l~V~nLp~~--~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 17 VVHVRGLCES--VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp EEEEESCCSS--CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 3466776422 2246788999999999887763 334666778998888876
No 147
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=32.53 E-value=96 Score=21.31 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=37.4
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=++||+..- -....+.+++.+||+|..+.+.. .-.|...+++.++.++.. ++..+.+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 18 VFVGDLSPE--ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356666422 22467889999999998776531 235666799999999864 3433433
No 148
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=31.88 E-value=1.1e+02 Score=20.13 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=33.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 6 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 6 YLGSIPYD--QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45555321 2246788999999999888763 2235666799999998863
No 149
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.62 E-value=99 Score=20.46 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=35.6
Q ss_pred ccccccccCCCchHHHH----HHHHhcCCeEEEecC------CccEEEccCHHHHHHHHHh-CCcccc
Q 042142 43 IIGHLHLLAPIPHQALH----KLSIRYGPLIHLFLG------SVPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~----~~~~~yG~i~~~~~g------~~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
++||+..-. ....+. +++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.
T Consensus 13 ~V~nL~~~~--~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 13 QVSNIDYRL--SRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp EEESCCTTS--CHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEECCCCCC--CHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 567764321 123444 899999999888764 2345666789999988863 343443
No 150
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.47 E-value=57 Score=22.64 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~~~f~ 99 (376)
++||+..- -....+.+++.+||+|..+.+.. .-.|...+++.++.++..+...+.
T Consensus 31 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 94 (116)
T 1x4b_A 31 FIGGLSFE--TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSID 94 (116)
T ss_dssp EEECCTTC--CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEET
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEEC
Confidence 45665321 22467889999999987766521 335666799999999876444443
No 151
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.31 E-value=1e+02 Score=21.10 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCCCCccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHH
Q 042142 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILK 92 (376)
Q Consensus 38 p~~~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~ 92 (376)
|...=++||+..- .-....+.+++++||.|..+.+. +.-.|-..+++.+..++.
T Consensus 14 p~~~l~V~nLp~~-~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRG-KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCS-SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3334467777530 11235688999999999988874 234677779999988876
No 152
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=31.15 E-value=1.3e+02 Score=20.71 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=35.5
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~ 93 (376)
=++||+..- -....+.+++++||+|..+.+. |.-.|...+++.++.++..
T Consensus 9 lfV~nL~~~--~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 9 VTFARLNDN--VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 356776422 2346788999999999887652 1236777899999999864
No 153
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=30.64 E-value=92 Score=19.93 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=33.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- -....+.++.++||+|..+.+.. .-.|-..+++.++.++..
T Consensus 10 ~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 10 FVGDLSPE--ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45665422 23467889999999998776521 235666789999998874
No 154
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=30.59 E-value=1.1e+02 Score=20.39 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=33.3
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~ 93 (376)
++||+.. .-....+.+++++||+|..+.+. +.-.|-..+.+.+..++..
T Consensus 31 ~V~nlp~--~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 31 YIGNIPH--FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEcCCCc--ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 4565532 12246788999999999877763 3345666788888888853
No 155
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.41 E-value=1.3e+02 Score=20.44 Aligned_cols=49 Identities=10% Similarity=-0.023 Sum_probs=36.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--~~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- -..+.+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 19 ~V~nLp~~--~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPPS--GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCSS--CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 56776422 2356788999999999887763 4566777899999999874
No 156
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=29.96 E-value=92 Score=21.29 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=28.7
Q ss_pred HHHHH-HhcCCeEEEecCC--------ccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 58 LHKLS-IRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 58 ~~~~~-~~yG~i~~~~~g~--------~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
+.+.. ++||+|..+.+.. .-.|-..+++.++..... ++..|.+|
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 44556 9999998887642 234556688888888753 44445443
No 157
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=29.68 E-value=1.3e+02 Score=20.44 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=37.1
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++++||+|..+.+. |.-.|-..+++.++.++.. ++..+.+
T Consensus 30 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 30 YVGSLHFN--ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp EEECCCSS--CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 56666422 2346788999999999877652 1345667899999999863 4434433
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=29.50 E-value=1.6e+02 Score=23.42 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=40.0
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHHHHH-hCCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILK-THETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~il~-~~~~~f~~~ 101 (376)
++||+..- .-....+.+++++||+|..+.+. +.-.|-..+++.++.++. -++..+.++
T Consensus 38 ~V~nLp~~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 38 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp EEESCCTT-TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred EEeCCCcc-cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 56776430 11246788999999999888764 345677789999999986 445455444
No 159
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=29.28 E-value=79 Score=20.63 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=34.3
Q ss_pred ccccccccCCCchHHHHHHHHhcC--CeEEEecC-----C----ccEEEccCHHHHHHHHH-hCCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYG--PLIHLFLG-----S----VPCIVACSPETAKEILK-THETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG--~i~~~~~g-----~----~~~v~i~dp~~~~~il~-~~~~~f~~~ 101 (376)
++||+..- -....+.++.++|| +|..+.+. + .-.|-..+++.++.++. -++..+.++
T Consensus 5 ~V~nL~~~--~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 5 YIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEeCCCCC--CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 35555321 12467889999999 87666542 1 23566678999998885 334344443
No 160
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=29.09 E-value=1.1e+02 Score=19.36 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=34.5
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT 93 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~ 93 (376)
=++||+..- -....+.++.++||+|..+.+.. .-.|-..+++.++.++..
T Consensus 10 l~V~nl~~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 10 LYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCC--CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 356666422 22467889999999998887621 235667789999988853
No 161
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.06 E-value=58 Score=22.20 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=32.1
Q ss_pred chHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHhCCccccC
Q 042142 54 PHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKTHETSFCD 100 (376)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~~~~~f~~ 100 (376)
....+.+....||.+..+++- .+-+|-..|.+.+..++.-++..+.+
T Consensus 37 l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 37 LRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETT
T ss_pred HHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCC
Confidence 345567777889988887764 44555566999988888755544433
No 162
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.98 E-value=1.3e+02 Score=20.06 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=38.8
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC-------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
-=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 17 NLYVKNLDDG--IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CEEEECCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3466776432 2246788999999999877653 1235667799999999873 44444433
No 163
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.94 E-value=88 Score=19.99 Aligned_cols=49 Identities=22% Similarity=0.145 Sum_probs=32.7
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHH
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILK 92 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~ 92 (376)
=++||+..- -....+.++.++||+|..+.+.. .-.|...+++.++.++.
T Consensus 8 l~v~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 8 LYIRGLQPG--TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEESCCTT--CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 356665422 22466888899999998876521 23566678888888876
No 164
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.91 E-value=1.2e+02 Score=20.29 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=37.9
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~~~f~~ 100 (376)
=++||+..- -....+.+++.+||+|..+.+.. .-.|-..+++.++.++..+...+.+
T Consensus 19 l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g 84 (105)
T 2dh8_A 19 LFVGGLDWS--TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 84 (105)
T ss_dssp ECCBSCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECC
Confidence 355665422 22467889999999998776532 2356677999999998765444443
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=28.44 E-value=1.6e+02 Score=22.75 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=34.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- -..+.+.++.++||+|..+.+. +.-.|...+++.++.++..
T Consensus 32 ~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 32 YVGSIYYE--LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 45555321 1246788999999999887762 2346777799999999873
No 166
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=27.92 E-value=1.1e+02 Score=22.75 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcC--CeEEEecC-----C----ccEEEccCHHHHHHHHHh
Q 042142 55 HQALHKLSIRYG--PLIHLFLG-----S----VPCIVACSPETAKEILKT 93 (376)
Q Consensus 55 ~~~~~~~~~~yG--~i~~~~~g-----~----~~~v~i~dp~~~~~il~~ 93 (376)
...+.+++.+|| +|..+.+. + .-.|-..+++.++.++..
T Consensus 69 e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 69 DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 467889999999 88877652 1 246677899999999876
No 167
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=27.91 E-value=74 Score=24.80 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=35.8
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHhCCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKTHETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~~~~~f 98 (376)
++||+.. ......+.+++.+||+|..+.+. |.-.|-..+++.++.++...+..+
T Consensus 113 ~V~nLp~--~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~ 174 (193)
T 2voo_A 113 YIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 174 (193)
T ss_dssp EEECCCT--TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEE
T ss_pred EecCCCC--cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeE
Confidence 4455432 22346789999999999877652 234566679999999987543333
No 168
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.72 E-value=1.3e+02 Score=19.72 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=36.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC----ccEEEccCHHHHHHHHHhCCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS----VPCIVACSPETAKEILKTHETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~----~~~v~i~dp~~~~~il~~~~~~f~~~ 101 (376)
++||+..- -....+.+++.+||+|..+.... .-.|-..+++.++.++.-++..+.++
T Consensus 12 ~V~nl~~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~ 72 (94)
T 2e5g_A 12 FVSGFPRG--VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGH 72 (94)
T ss_dssp EEECCCTT--CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTE
T ss_pred EEECCCCC--CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCE
Confidence 45665422 23467889999999998764321 23455679999999988544444433
No 169
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.19 E-value=1.4e+02 Score=20.28 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHH
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILK 92 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~ 92 (376)
.=++||+.. .-....+.+++++||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 17 ~l~V~nLp~--~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 17 VLHIRKLPG--EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp EEEEESCCT--TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 346677653 22346788999999999887763 344666778998888876
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=26.42 E-value=1e+02 Score=27.82 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=38.0
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=+||||..- -....|.+++.+||+|..+.+. +.-+|...+++.+..++.. ++..+.+
T Consensus 105 lfV~nL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 105 LFVARVNYD--TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred EEEeCCCCC--CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 366776422 1246788999999999887662 2346667799999998854 4444443
No 171
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.26 E-value=1.4e+02 Score=19.67 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=37.9
Q ss_pred CccccccccCCCchHHHHHHHHhc--CCeEEEecC-CccEEEccCHHHHHHHHH-hCCcccc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRY--GPLIHLFLG-SVPCIVACSPETAKEILK-THETSFC 99 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~y--G~i~~~~~g-~~~~v~i~dp~~~~~il~-~~~~~f~ 99 (376)
=++||+..- -....+.+++.+| |.|..+.+. +.-.|-..+++.++.++. -++..+.
T Consensus 18 l~V~nLp~~--~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 18 LYVRNLMLS--TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 356666422 2346788999999 889888764 344566779999999887 3444443
No 172
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=26.19 E-value=1.2e+02 Score=20.17 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=35.5
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC----------ccEEEccCHHHHHHHHHhCCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS----------VPCIVACSPETAKEILKTHETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~v~i~dp~~~~~il~~~~~~f~~ 100 (376)
++||+..- -....+.+++++|| |..+.+.. .-.|...+.+.++.++.-++..+.+
T Consensus 23 ~V~nLp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 23 FLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp EESCCSSC--CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred EEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 45665422 12346888899999 98887632 2356677899999988544444443
No 173
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.13 E-value=67 Score=21.63 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=34.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- -....+.+++.+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 19 ~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSED--TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCTT--CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 56666432 22456888999999998876632 235667799999999873
No 174
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.97 E-value=1.5e+02 Score=19.69 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=37.4
Q ss_pred CCccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCcccc
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
-=++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.
T Consensus 14 ~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 14 VLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CEEEESCCSS--CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred EEEEeCCCCC--CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456776432 22467889999999998777631 234556689999998863 444443
No 175
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.92 E-value=1.3e+02 Score=19.06 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=35.5
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~ 93 (376)
=++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 15 l~V~~l~~~--~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 15 LYVGGLGDT--ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp EEEECCTTT--SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEcCCCCC--CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 356666422 2346788999999999887763 3446667799999999874
No 176
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=25.85 E-value=1.3e+02 Score=22.09 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=38.2
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-----C----ccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-----S----VPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-----~----~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=+++|+..- -....+.+++++||+|..+.+. + .-.|...+++.++.++.. +...+.+
T Consensus 42 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 42 LYVGNLSFY--TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356665421 2246789999999999888762 1 235667799999999874 4444443
No 177
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=25.71 E-value=1.1e+02 Score=21.57 Aligned_cols=64 Identities=5% Similarity=0.052 Sum_probs=40.6
Q ss_pred CCCCcccccccc---CCCchHHHHHHHHhcCCeEEEecC-------------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 39 MALPIIGHLHLL---APIPHQALHKLSIRYGPLIHLFLG-------------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 39 ~~~p~lG~~~~~---~~~~~~~~~~~~~~yG~i~~~~~g-------------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
...=+|.|+..- ..+....+.+.+.+||+|..+.+. |.-.|-..+++.++..... ++..|.+|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 344456665322 344557788899999999887653 1234556689888888754 45555544
Q ss_pred C
Q 042142 102 P 102 (376)
Q Consensus 102 ~ 102 (376)
.
T Consensus 100 ~ 100 (118)
T 3ue2_A 100 K 100 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 178
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.56 E-value=1.6e+02 Score=19.83 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=38.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEE-EecC--------CccEEEccCHHHHHHHHHhCCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIH-LFLG--------SVPCIVACSPETAKEILKTHETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~-~~~g--------~~~~v~i~dp~~~~~il~~~~~~f~~~ 101 (376)
++||+..- -....+.+++++||+|.. +.+. |.-.|-..+++.++.++..++..+.+|
T Consensus 19 ~V~nLp~~--~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 19 RLRGLPFG--CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEESCCTT--CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 56666422 224678899999998765 5431 235677789999999998755555444
No 179
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=25.54 E-value=1e+02 Score=21.21 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=30.8
Q ss_pred hHHHHHHHHhcCCeEEEecCCc-cEEEccCHHHHHHHHH
Q 042142 55 HQALHKLSIRYGPLIHLFLGSV-PCIVACSPETAKEILK 92 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~-~~v~i~dp~~~~~il~ 92 (376)
...+.+++..||.+.--|+... -.+++.+|+.+++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 4678899999998877777644 4677889999999997
No 180
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=24.91 E-value=1.4e+02 Score=21.29 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=36.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 46 ~V~nLp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 46 MVNYIPTT--VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp EEESCSTT--CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45555321 1246788999999999877652 1235667799999999874 4434433
No 181
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.79 E-value=1.3e+02 Score=20.56 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=37.4
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCC--------ccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=+++|+..- -....+.+++.+||+|..+.+.. .-.|...+++.++.++.. ++..+.+
T Consensus 18 l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 18 VFVANLDYK--VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 356666432 23467889999999998766531 235666789999998873 4444433
No 182
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.41 E-value=1.5e+02 Score=19.32 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=36.8
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEe-cCC-----ccEEEccCHHHHHHHHH-hCCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLF-LGS-----VPCIVACSPETAKEILK-THETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~-~g~-----~~~v~i~dp~~~~~il~-~~~~~f~~ 100 (376)
=++||+..- -....+.+++.+||+|..+. +.. .-.|-..+++.++.++. -++..+.+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 18 LQIRNIPPH--LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp EEEEEECSS--SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred EEEEcCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 366776432 22467889999999998873 321 14566678998988886 34444433
No 183
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.31 E-value=1e+02 Score=20.25 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=33.3
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEE-ecC---------CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHL-FLG---------SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~-~~g---------~~~~v~i~dp~~~~~il~~ 93 (376)
++||+..- -....+.+++++||+|..+ .+. +.-.|-..+++.++.++..
T Consensus 9 ~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 9 FIGNLDPE--IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEECCCTT--CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 45665422 2246788999999998665 442 1335677899999999873
No 184
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=1.6e+02 Score=19.56 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=38.7
Q ss_pred CCccccccccCCCchHHHHHHHHh-cCCeEEEecC--------CccEEEccCHHHHHHHHHh-CCcc-ccCC
Q 042142 41 LPIIGHLHLLAPIPHQALHKLSIR-YGPLIHLFLG--------SVPCIVACSPETAKEILKT-HETS-FCDR 101 (376)
Q Consensus 41 ~p~lG~~~~~~~~~~~~~~~~~~~-yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~-~~~~-f~~~ 101 (376)
-=++||+..- -....+.+++.+ ||+|..+.+. +.-.|-..+++.++.++.. ++.. +.++
T Consensus 11 ~l~V~nLp~~--~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 11 SLFVGDLTPD--VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CEEEECCCTT--CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 3466776532 224678889999 9999877652 1235667799999999874 3333 4444
No 185
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.20 E-value=1.6e+02 Score=19.40 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=37.9
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeE-EEecC---------CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLI-HLFLG---------SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~-~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=++||+..- -....+.+++++||+|. .+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 12 l~V~nLp~~--~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 12 LWMGDLEPY--MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp EEECSCCTT--CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 356776422 22467889999999988 76652 1235666799999999873 44444443
No 186
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.09 E-value=1.5e+02 Score=19.12 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=38.4
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
=++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 11 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 11 LFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp EEEESCCSS--CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 356666432 2246788999999999887764 3445667799999998853 33344433
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=23.99 E-value=1.5e+02 Score=23.18 Aligned_cols=59 Identities=5% Similarity=0.051 Sum_probs=39.9
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHHHHH-hCCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILK-THETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~il~-~~~~~f~~~ 101 (376)
=++||+... .-..+.+.+++.+||+|..+.+. |.-.|...+++.++.++. -++..+.++
T Consensus 7 l~V~nL~~~-~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 7 LMVYGLDQS-KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp EEEECCCTT-TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356776511 11235788999999999988763 356788889999999886 344444443
No 188
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.85 E-value=1.6e+02 Score=19.40 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=37.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh-CCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~-~~~~f~~~ 101 (376)
++||+..- -....+.+++++||+|..+.+. +.-.|-..+++.++.++.. ++..+.++
T Consensus 19 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 19 FVGNLPPD--ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp EEESCCTT--CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred EEeCCCCC--CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 56766432 2246788999999999877764 3345666788999888854 44444443
No 189
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=23.49 E-value=2e+02 Score=21.92 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=32.6
Q ss_pred hHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 55 HQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
...+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.+
T Consensus 102 e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 102 DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 46788999999999877763 2345667799999998874 3334433
No 190
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=23.45 E-value=49 Score=21.54 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHhhhhCCCC
Q 042142 327 HPDMMKKAREEIDSVVGKSR 346 (376)
Q Consensus 327 ~P~v~~~l~~Ei~~v~~~~~ 346 (376)
.|+..+.+++||.+|+.+.-
T Consensus 24 ~pd~l~~lk~eIl~VIsKYv 43 (77)
T 3r9j_C 24 EPHYLPQLRKDILEVICKYV 43 (77)
T ss_dssp SCSSHHHHHHHHTTGGGTTS
T ss_pred CHHHHHHHHHHHHHHHHhhe
Confidence 69999999999999987643
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=23.32 E-value=1.3e+02 Score=22.91 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHhCCccccCC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDR 101 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~~~~~f~~~ 101 (376)
++||+..-.. ...+.+++++||+|..+.+-. .-.|...+++.++.++..++..+.++
T Consensus 17 ~V~nLp~~~t--e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 82 (196)
T 1l3k_A 17 FIGGLSFETT--DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 82 (196)
T ss_dssp EEESCCTTCC--HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE
T ss_pred EEeCCCCCCC--HHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.02 E-value=97 Score=19.98 Aligned_cols=46 Identities=13% Similarity=0.348 Sum_probs=31.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHHH
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEI 90 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~i 90 (376)
++||+..- -..+.+.+++++||+|..+.+. +.-.|-..+++.++.+
T Consensus 9 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 9 FVGRCTGD--MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEESCCSS--SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEeCCCCC--CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 45665422 2246788999999999888774 3456777788888754
No 193
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=22.93 E-value=1.4e+02 Score=22.35 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=36.4
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC---------CccEEEccCHHHHHHHHHh-CCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f 98 (376)
++||+.. .-....+.+++.+||+|..+.+. +.-+|-..+++.++.++.. ++..+
T Consensus 76 ~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 76 FVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEeCCCC--CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5666543 22346788999999999877653 2345667789999998864 44334
No 194
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=22.60 E-value=2.2e+02 Score=20.58 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=38.1
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC----CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++.+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 77 ~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 77 YVGNLGNN--GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp EEESCCSC--CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 56776432 1246688999999999888763 3446667799999998863 4444433
No 195
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=22.55 E-value=2.3e+02 Score=20.67 Aligned_cols=56 Identities=9% Similarity=0.206 Sum_probs=37.7
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++.+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+
T Consensus 74 ~v~nl~~~--~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 74 KVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp EEESCCTT--CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45665321 22467889999999998887642 235667799999999974 4444433
No 196
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=22.51 E-value=1.9e+02 Score=19.73 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=36.2
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCcccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFC 99 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~ 99 (376)
++||+..- -..+.+.+++++||+|..+.+.. .-.|-..+++.++.++.. ++..+.
T Consensus 29 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 29 FIYHLPQE--FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp EEESCCSS--CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 56666432 22467889999999987766521 235667799999998854 443443
No 197
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.35 E-value=1.8e+02 Score=19.41 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=39.2
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecCCc----------cEEEccCHHHHHHHHHh--CCccccCC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV----------PCIVACSPETAKEILKT--HETSFCDR 101 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~----------~~v~i~dp~~~~~il~~--~~~~f~~~ 101 (376)
=++||+..- -....+.+++.+||+|..+.+... -.|-..+++.++.++.. ++..+.++
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 18 ILVRNIPFQ--ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred EEEeCCCCc--CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 356776432 224678899999999988877432 35666799999998875 44445443
No 198
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=21.25 E-value=2.1e+02 Score=20.42 Aligned_cols=56 Identities=9% Similarity=0.206 Sum_probs=37.6
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecCC---------ccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++++||+|..+.+.. .-.|-..+++.++.++.. ++..+.+
T Consensus 51 ~V~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 51 KVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp EEECCCSS--CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45665321 22467889999999998887642 246777899999999864 3434433
No 199
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.04 E-value=1.7e+02 Score=19.91 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=36.3
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeE--------EEecC---------CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLI--------HLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~--------~~~~g---------~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
++||+..- -....+.+++++||+|. .+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 19 ~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 19 YVQGLNDS--VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp EEECCCTT--CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred EEcCCCCC--CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 56666421 22467889999999986 34442 1236667799999999874 4444443
No 200
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=20.95 E-value=60 Score=21.82 Aligned_cols=53 Identities=11% Similarity=0.289 Sum_probs=34.0
Q ss_pred ccccccccCCCchHHHHHHHHhcCCeEEEecC--------CccEEEccCHHHHHHHHHhCCccc
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKTHETSF 98 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~v~i~dp~~~~~il~~~~~~f 98 (376)
++||+..- -....+.++..+||+|..+.+. |.-.|-..+++.++.++. ++..+
T Consensus 13 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~ 73 (102)
T 2xs2_A 13 FVGGIDVR--MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINF 73 (102)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeE
Confidence 45665421 2246788999999999877652 123455668888888877 44333
No 201
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.92 E-value=2.2e+02 Score=19.97 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCCCcc--ccccccCCCchHHHHHHHHhcCCeEEEecC---CccEEEccCHHHHHHHHHh
Q 042142 39 MALPII--GHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 39 ~~~p~l--G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~v~i~dp~~~~~il~~ 93 (376)
...=++ |++..- -..+.+.+.+++||.|..+.+. +.-.|-..+++.++.++..
T Consensus 25 t~~L~V~Ng~L~~~--~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 25 TQSLVVANGGLGNG--VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CSEEEEETCTGGGT--CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCC--CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 333466 555421 2246799999999999888764 2345667799999998864
No 202
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.38 E-value=2e+02 Score=19.25 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=34.5
Q ss_pred ccccccccCCCchHHHHHHHHhcCC-eEEEecC----------CccEEEccCHHHHHHHHHh
Q 042142 43 IIGHLHLLAPIPHQALHKLSIRYGP-LIHLFLG----------SVPCIVACSPETAKEILKT 93 (376)
Q Consensus 43 ~lG~~~~~~~~~~~~~~~~~~~yG~-i~~~~~g----------~~~~v~i~dp~~~~~il~~ 93 (376)
++||+.. .-....+.+++.+||+ |..+.+. +.-.|-..+++.++.++..
T Consensus 12 ~V~nLp~--~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 12 FIGGIPK--MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEECCCT--TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCC--cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 5666542 1234678899999998 8877664 2345666799999999874
No 203
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=1.8e+02 Score=18.67 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=38.6
Q ss_pred CccccccccCCCchHHHHHHHHhcCCeEEEecC-CccEEEccCHHHHHHHHHh-CCccccC
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCD 100 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~v~i~dp~~~~~il~~-~~~~f~~ 100 (376)
=++||+..- -....+.++.++||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 12 l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 12 IFVGNVSAA--CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356776432 2346788999999999888764 3445666799999998873 4444433
No 204
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.03 E-value=1.3e+02 Score=20.64 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=34.8
Q ss_pred CccccccccCCCchHHHHHHHHhcCCe---EEEec---C---CccEEEccCHHHHHHHHHhCCc
Q 042142 42 PIIGHLHLLAPIPHQALHKLSIRYGPL---IHLFL---G---SVPCIVACSPETAKEILKTHET 96 (376)
Q Consensus 42 p~lG~~~~~~~~~~~~~~~~~~~yG~i---~~~~~---g---~~~~v~i~dp~~~~~il~~~~~ 96 (376)
=++||+..- -....+.+++++||.+ +++.. | +.-.|-..+++.++.++..+..
T Consensus 18 l~V~nLp~~--~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~ 79 (114)
T 2cpy_A 18 AHITNIPFS--ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRK 79 (114)
T ss_dssp EEEESCCTT--SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSE
T ss_pred EEEeCcCCc--CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCC
Confidence 356666422 2245688999999998 44422 1 2356777899999999876443
Done!