BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042145
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 14/232 (6%)

Query: 15  STVESVTSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDLIKQIGQ 66
           S + S+   YIRP  +  ++ +V    +  DG  +P IDL+ +   D   R + I+++ +
Sbjct: 12  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71

Query: 67  ACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPS-KSKRLSTSFNVN 125
           A    G   + NHGIP  ++         FF L   E+ K  +D  + K +   +    N
Sbjct: 72  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131

Query: 126 TKKVSNWRDYLRLHCYPLQDC-MHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMG 183
                 W DY     YP +   +  WP  P  + E  +EY   +R L  K+ +A+S  +G
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191

Query: 184 LQRDYIDKALGKHGQ---QMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232
           L+ D ++K +G   +   QM +NY P CPQP+L  G+  HTD + +T +L +
Sbjct: 192 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243


>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 14/232 (6%)

Query: 15  STVESVTSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDLIKQIGQ 66
           S + S+   YIRP  +  ++ +V    +  DG  +P IDL+ +   D   R + I+++ +
Sbjct: 13  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72

Query: 67  ACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPS-KSKRLSTSFNVN 125
           A    G   + NHGIP  ++         FF L   E+ K  +D  + K +   +    N
Sbjct: 73  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132

Query: 126 TKKVSNWRDYLRLHCYPLQDC-MHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMG 183
                 W DY     YP +   +  WP  P  + E  +EY   +R L  K+ +A+S  +G
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192

Query: 184 LQRDYIDKALGKHGQ---QMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232
           L+ D ++K +G   +   QM +NY P CPQP+L  G+  HTD + +T +L +
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 244


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 14/232 (6%)

Query: 15  STVESVTSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDLIKQIGQ 66
           S + S+   YIRP  +  ++ +V    +  DG  +P IDL+ +   D   R + I+++ +
Sbjct: 13  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72

Query: 67  ACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPS-KSKRLSTSFNVN 125
           A    G   + NHGIP  +          FF L   E+ K  +D  + K +   +    N
Sbjct: 73  ASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132

Query: 126 TKKVSNWRDYLRLHCYPLQDC-MHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMG 183
                 W DY     YP +   +  WP  P  + E  +EY   +R L  K+ +A+S  +G
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192

Query: 184 LQRDYIDKALGKHGQ---QMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232
           L+ D ++K +G   +   Q  +NY P CPQP+L  G+  HTD + +T +L +
Sbjct: 193 LEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHN 244


>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 13/196 (6%)

Query: 43  SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPES 102
           + P+I L  ++G  R    + I  AC + GFF++ NHGIP  + +         +K    
Sbjct: 3   NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62

Query: 103 ERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVA 161
           +R K        SK L       T    +W     L   P+ + + E P     + EV  
Sbjct: 63  QRFKEL----VASKALEGVQAEVTD--XDWESTFFLKHLPISN-ISEVPDLDEEYREVXR 115

Query: 162 EYCTSVRGLVLKLLEAISESMGLQRDYIDKAL-GKHGQQMAL---NYCPPCPQPDLTYGL 217
           ++   +  L  +LL+ + E++GL++ Y+  A  G  G        NY PPCP+PDL  GL
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNY-PPCPKPDLIKGL 174

Query: 218 PGHTDPNLITVLLQDD 233
             HTD   I +L QDD
Sbjct: 175 RAHTDAGGIILLFQDD 190


>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
           Family Protein (Cc_0200) From Caulobacter Crescentus At
           1.44 A Resolution
 pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
           Family Protein (Cc_0200) From Caulobacter Crescentus At
           1.44 A Resolution
          Length = 312

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 60  LIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLS 119
             +++G +    GF  + ++ + +  I+  +  A AFF LP  E  K Y+       R  
Sbjct: 22  FAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP-VETKKQYAG-VKGGARGY 79

Query: 120 TSFNVNTKKVSN-------W---RDYLRLHCYPLQDCMHEWPSNPPSFEV-VAEYCTSVR 168
             F V T K ++       W   RD    H +      + WP+  P+F+  V+    S+ 
Sbjct: 80  IPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLD 139

Query: 169 GLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITV 228
           G   K+LEAI+  + L+RD+    +      + L + PP P+         H D N IT+
Sbjct: 140 GXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITL 199

Query: 229 LL 230
           LL
Sbjct: 200 LL 201


>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
          Length = 325

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 37/228 (16%)

Query: 39  ISDGSIPLIDLQVL---DGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGA 95
           +S  ++P ID+  L   D   ++ + +QI  A    GFF   NHGI        LS    
Sbjct: 4   VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINV----QRLSQKTK 59

Query: 96  FFKL---PESE---RLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYP------L 143
            F +   PE +    +++Y+ +     R     ++  KK      YL  +  P       
Sbjct: 60  EFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119

Query: 144 QDCMHE---WP--SNPPSFEVVAE-YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHG 197
           +   HE   WP  +  P F+  AE Y   V GL   LL+  + ++G + ++  +      
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179

Query: 198 QQMAL-----NYCPPCPQPDLTYGLPG-------HTDPNLITVLLQDD 233
              ++      Y  P P+  +     G       H D +LITVL Q +
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN 227


>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Manganese Complex)
 pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
           (Manganese Complex)
 pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
           Fe Complex)
 pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Monocyclic Sulfoxide - Fe Complex)
 pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
           Fe Complex)
 pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
           Exposed Product From Anaerobic Acov Fe Complex)
 pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
           Exposed Product From Anaerobic Acov Fe Complex)
 pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
           Exposed Product From Anaerobic Acov Fe Complex)
 pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Anaerobic Acov Fe Complex)
 pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (anaerobic Ac-vinylglycine Fe Complex)
 pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
           Fe Complex)
 pdb|1OBN|A Chain A, Isopenicillin N Synthase
           Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
 pdb|1OC1|A Chain A, Isopenicillin N Synthase
           Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
 pdb|1UZW|A Chain A, Isopenicillin N Synthase With
           L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
 pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
           Complex
 pdb|1W04|A Chain A, Isopenicillin N Synthase
           Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
 pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
           Complex
 pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
           No Complex
 pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
           Cysteinyl-L-Hexafluorovaline
 pdb|1W3V|A Chain A, Isopenicillin N Synthase
           D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
           D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
 pdb|1W3X|A Chain A, Isopenicillin N Synthase
           D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
           D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
           Minutes 20 Bar)
 pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
           (anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
 pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Anaerobic Ac-Cyclopropylglycine Fe Complex)
 pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
           Complex)
 pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Acv-Fe- No Complex)
 pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
           Product Analogue
 pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
           Unexposed)
 pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
           35minutes Oxygen Exposure)
 pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
           Acomp (unexposed)
 pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
           L,L,L-Acab (Unexposed)
 pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
 pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
           Oxygen Exposed 1min 20bar)
 pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
           Acd2ab (Unexposed)
 pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
           Ac-D-S-Methyl-3r-Methylcysteine
 pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
 pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
 pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
          Length = 331

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 37/228 (16%)

Query: 39  ISDGSIPLIDLQVL---DGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGA 95
           +S  ++P ID+  L   D   ++ + +QI  A    GFF   NHGI        LS    
Sbjct: 4   VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINV----QRLSQKTK 59

Query: 96  FFKL---PESE---RLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYP------L 143
            F +   PE +    +++Y+ +     R     ++  KK      YL  +  P       
Sbjct: 60  EFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119

Query: 144 QDCMHE---WP--SNPPSFEVVAE-YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHG 197
           +   HE   WP  +  P F+  AE Y   V GL   LL+  + ++G + ++  +      
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179

Query: 198 QQMAL-----NYCPPCPQPDLTYGLPG-------HTDPNLITVLLQDD 233
              ++      Y  P P+  +     G       H D +LITVL Q +
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN 227


>pdb|3LQ9|A Chain A, Crystal Strucure Of Human Redd1, A Hypoxia-Induced
           Regulator Of Mtor
 pdb|3LQ9|B Chain B, Crystal Strucure Of Human Redd1, A Hypoxia-Induced
           Regulator Of Mtor
          Length = 134

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 58  LDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKR 117
           LD+  + G++CH  G   +    +P   +   L +    +  P+ + L S ++ PS+S  
Sbjct: 60  LDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLW--PKIQGLFSSANSPSQSLT 117

Query: 118 LSTSFNVNTKKV 129
           LST F V  KK+
Sbjct: 118 LSTGFRVIKKKL 129


>pdb|3HY2|X Chain X, Crystal Structure Of Sulfiredoxin In Complex With
          Peroxiredoxin I And Atp:mg2+
 pdb|3HY2|Y Chain Y, Crystal Structure Of Sulfiredoxin In Complex With
          Peroxiredoxin I And Atp:mg2+
          Length = 110

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLS 91
          S+P ID+  + G +  D     G A  +  + Q++   IP  ++ +TLS
Sbjct: 48 SVPPIDVLWIKGAQGGDYFYSFGGAHRYAAYQQLQRETIPAKLVQSTLS 96


>pdb|1G13|A Chain A, Human Gm2 Activator Structure
 pdb|1G13|B Chain B, Human Gm2 Activator Structure
 pdb|1G13|C Chain C, Human Gm2 Activator Structure
          Length = 162

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 187 DYIDKALGKHGQQMALNYCP---PCPQPDLTYGLPGH 220
           DYI     +H   +     P   PCP+P  TYGLP H
Sbjct: 70  DYIGSCTFEHFCDVLDXLIPTGEPCPEPLRTYGLPCH 106


>pdb|2AG9|A Chain A, Crystal Structure Of The Y137s Mutant Of Gm2-Activator
           Protein
 pdb|2AG9|B Chain B, Crystal Structure Of The Y137s Mutant Of Gm2-Activator
           Protein
          Length = 164

 Score = 27.3 bits (59), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 187 DYIDKALGKHG---QQMALNYCPPCPQPDLTYGLPGH 220
           DYI     +H      M +    PCP+P  TYGLP H
Sbjct: 72  DYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCH 108


>pdb|1PU5|A Chain A, Gm2-activator Protein Crystal Structure
 pdb|1PU5|B Chain B, Gm2-activator Protein Crystal Structure
 pdb|1PU5|C Chain C, Gm2-activator Protein Crystal Structure
 pdb|1TJJ|A Chain A, Human Gm2 Activator Protein Paf Complex
 pdb|1TJJ|B Chain B, Human Gm2 Activator Protein Paf Complex
 pdb|1TJJ|C Chain C, Human Gm2 Activator Protein Paf Complex
 pdb|2AF9|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
           Complexed With Phosphatidylcholine
 pdb|2AG2|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
           Complexed With Phosphatidylcholine
 pdb|2AG2|B Chain B, Crystal Structure Analysis Of Gm2-Activator Protein
           Complexed With Phosphatidylcholine
 pdb|2AG2|C Chain C, Crystal Structure Analysis Of Gm2-Activator Protein
           Complexed With Phosphatidylcholine
 pdb|2AG4|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
           Complexed With Phosphatidylcholine
 pdb|2AG4|B Chain B, Crystal Structure Analysis Of Gm2-Activator Protein
           Complexed With Phosphatidylcholine
          Length = 164

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 187 DYIDKALGKHG---QQMALNYCPPCPQPDLTYGLPGH 220
           DYI     +H      M +    PCP+P  TYGLP H
Sbjct: 72  DYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCH 108


>pdb|1PUB|A Chain A, Gm2-Activator Protein Crystal Structure
          Length = 162

 Score = 26.9 bits (58), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 187 DYIDKALGKHG---QQMALNYCPPCPQPDLTYGLPGH 220
           DYI     +H      M +    PCP+P  TYGLP H
Sbjct: 70  DYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCH 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,072,185
Number of Sequences: 62578
Number of extensions: 280897
Number of successful extensions: 980
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 20
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)