Query 042145
Match_columns 233
No_of_seqs 113 out of 1107
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02912 oxidoreductase, 2OG-F 100.0 2E-50 4.2E-55 354.7 21.6 230 4-233 2-232 (348)
2 PLN02904 oxidoreductase 100.0 1.2E-49 2.5E-54 350.7 22.0 230 3-233 9-243 (357)
3 PLN02758 oxidoreductase, 2OG-F 100.0 1.2E-49 2.7E-54 351.2 20.7 223 8-232 15-245 (361)
4 PLN02947 oxidoreductase 100.0 2E-49 4.4E-54 350.7 21.8 226 7-233 25-260 (374)
5 PLN02216 protein SRG1 100.0 4.5E-49 9.7E-54 347.2 22.2 224 7-232 14-244 (357)
6 PLN03178 leucoanthocyanidin di 100.0 6.6E-48 1.4E-52 340.4 21.4 226 7-233 5-246 (360)
7 PLN02515 naringenin,2-oxogluta 100.0 8.7E-48 1.9E-52 338.7 21.2 216 16-233 11-230 (358)
8 PLN02254 gibberellin 3-beta-di 100.0 1.5E-47 3.2E-52 337.3 21.1 211 16-233 26-245 (358)
9 PLN02393 leucoanthocyanidin di 100.0 1.8E-47 3.8E-52 337.8 21.5 224 7-232 12-247 (362)
10 PLN02639 oxidoreductase, 2OG-F 100.0 4E-47 8.7E-52 332.9 22.1 213 17-233 12-225 (337)
11 PLN02276 gibberellin 20-oxidas 100.0 8E-47 1.7E-51 333.5 21.3 212 18-233 18-241 (361)
12 PLN00417 oxidoreductase, 2OG-F 100.0 4E-46 8.8E-51 327.4 22.6 221 10-232 9-237 (348)
13 PLN02750 oxidoreductase, 2OG-F 100.0 3.8E-46 8.2E-51 327.7 22.3 212 18-233 2-228 (345)
14 PLN02704 flavonol synthase 100.0 9.8E-46 2.1E-50 323.9 21.1 222 9-233 5-234 (335)
15 COG3491 PcbC Isopenicillin N s 100.0 2.1E-45 4.5E-50 308.2 18.5 191 42-233 4-209 (322)
16 PTZ00273 oxidase reductase; Pr 100.0 3.1E-44 6.7E-49 313.0 20.3 192 42-233 4-213 (320)
17 PLN02485 oxidoreductase 100.0 1E-43 2.2E-48 310.7 20.1 191 42-232 6-222 (329)
18 PLN02299 1-aminocyclopropane-1 100.0 7.5E-43 1.6E-47 303.6 20.4 184 42-232 5-192 (321)
19 PLN02997 flavonol synthase 100.0 1E-42 2.3E-47 303.0 20.8 184 42-233 31-218 (325)
20 PLN03002 oxidoreductase, 2OG-F 100.0 2.2E-42 4.7E-47 302.3 19.8 187 42-233 13-218 (332)
21 KOG0143 Iron/ascorbate family 100.0 4.8E-42 1E-46 298.0 20.5 190 42-232 16-210 (322)
22 PLN02403 aminocyclopropanecarb 100.0 8.8E-42 1.9E-46 294.5 19.4 183 42-232 1-187 (303)
23 PLN02156 gibberellin 2-beta-di 100.0 9.9E-41 2.1E-45 291.4 19.7 182 42-233 25-215 (335)
24 PLN02984 oxidoreductase, 2OG-F 100.0 9.7E-41 2.1E-45 292.1 18.8 184 42-233 37-235 (341)
25 PLN02365 2-oxoglutarate-depend 100.0 2.8E-39 6.1E-44 279.2 18.6 175 42-232 4-183 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 6.9E-30 1.5E-34 216.3 13.1 144 90-233 2-151 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 9.1E-26 2E-30 168.8 6.9 107 44-153 1-116 (116)
28 PLN03176 flavanone-3-hydroxyla 99.9 4.4E-23 9.5E-28 154.9 11.4 110 9-121 5-116 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.8 6.4E-06 1.4E-10 59.2 1.4 32 198-232 2-35 (98)
30 PF07350 DUF1479: Protein of u 77.2 2.1 4.6E-05 38.8 2.8 53 42-98 48-100 (416)
31 TIGR02409 carnitine_bodg gamma 66.5 9.2 0.0002 34.1 4.4 51 42-97 108-158 (366)
32 PRK08130 putative aldolase; Va 66.0 12 0.00027 30.5 4.8 36 43-81 127-162 (213)
33 PF11243 DUF3045: Protein of u 66.0 5.3 0.00011 27.4 2.0 21 62-82 36-56 (89)
34 PRK08333 L-fuculose phosphate 62.5 15 0.00032 29.3 4.5 37 42-81 119-155 (184)
35 PRK05874 L-fuculose-phosphate 54.5 24 0.00053 29.0 4.6 36 43-81 127-162 (217)
36 TIGR03581 EF_0839 conserved hy 51.6 42 0.0009 27.9 5.3 50 42-95 150-200 (236)
37 PRK08660 L-fuculose phosphate 51.3 27 0.00059 27.7 4.3 35 43-81 115-149 (181)
38 PRK08087 L-fuculose phosphate 50.1 31 0.00068 28.2 4.6 36 43-81 122-157 (215)
39 PF00596 Aldolase_II: Class II 50.0 15 0.00032 29.0 2.6 37 42-81 122-159 (184)
40 PF01113 DapB_N: Dihydrodipico 45.5 44 0.00096 24.6 4.4 45 45-95 70-115 (124)
41 PRK06833 L-fuculose phosphate 45.1 36 0.00077 27.8 4.2 37 42-81 123-159 (214)
42 PF10055 DUF2292: Uncharacteri 44.5 18 0.00038 21.3 1.6 13 221-233 13-25 (38)
43 PRK03634 rhamnulose-1-phosphat 42.1 50 0.0011 28.2 4.7 37 43-82 179-215 (274)
44 TIGR03328 salvage_mtnB methylt 41.8 50 0.0011 26.5 4.5 35 43-81 126-163 (193)
45 PRK06754 mtnB methylthioribulo 41.3 38 0.00082 27.6 3.7 35 43-81 137-172 (208)
46 PRK04596 minC septum formation 39.7 51 0.0011 27.9 4.3 46 46-91 54-99 (248)
47 PF00046 Homeobox: Homeobox do 39.6 33 0.00071 21.2 2.5 36 158-193 13-48 (57)
48 PRK09553 tauD taurine dioxygen 39.3 64 0.0014 27.4 5.0 52 42-99 14-65 (277)
49 smart00702 P4Hc Prolyl 4-hydro 38.9 1.1E+02 0.0024 23.7 6.1 29 197-231 82-118 (178)
50 PRK06755 hypothetical protein; 37.2 46 0.00099 27.3 3.6 36 43-81 136-171 (209)
51 TIGR02410 carnitine_TMLD trime 37.1 45 0.00098 29.6 3.9 51 43-97 100-150 (362)
52 PRK06557 L-ribulose-5-phosphat 35.7 60 0.0013 26.6 4.1 38 42-82 129-168 (221)
53 TIGR02624 rhamnu_1P_ald rhamnu 35.2 69 0.0015 27.4 4.5 36 43-81 177-212 (270)
54 TIGR01086 fucA L-fuculose phos 35.1 49 0.0011 27.0 3.5 36 43-81 121-156 (214)
55 PF01471 PG_binding_1: Putativ 34.4 68 0.0015 19.8 3.4 43 59-101 3-45 (57)
56 COG0289 DapB Dihydrodipicolina 33.8 1.1E+02 0.0023 26.2 5.3 44 46-95 73-117 (266)
57 PRK06357 hypothetical protein; 33.6 93 0.002 25.5 4.9 36 43-81 130-171 (216)
58 PRK05834 hypothetical protein; 32.0 73 0.0016 25.7 4.0 38 43-81 121-160 (194)
59 PRK06661 hypothetical protein; 31.5 77 0.0017 26.3 4.1 38 43-81 123-160 (231)
60 PLN02452 phosphoserine transam 29.1 1.2E+02 0.0027 27.0 5.3 38 59-96 311-360 (365)
61 cd00398 Aldolase_II Class II A 27.6 74 0.0016 25.7 3.4 39 42-81 121-159 (209)
62 PRK13835 conjugal transfer pro 27.2 68 0.0015 24.8 2.8 30 45-78 59-88 (145)
63 PF03668 ATP_bind_2: P-loop AT 27.0 92 0.002 26.9 3.9 28 65-94 18-45 (284)
64 cd00086 homeodomain Homeodomai 25.6 75 0.0016 19.4 2.5 37 158-194 13-49 (59)
65 PRK01964 4-oxalocrotonate taut 25.4 1.1E+02 0.0024 19.4 3.3 24 165-188 15-38 (64)
66 PF02829 3H: 3H domain; Inter 25.1 52 0.0011 23.6 1.8 20 56-75 79-98 (98)
67 PRK09220 methylthioribulose-1- 24.8 1.3E+02 0.0029 24.2 4.4 25 57-81 144-171 (204)
68 PRK07044 aldolase II superfami 24.8 1.4E+02 0.003 25.1 4.5 37 43-81 138-174 (252)
69 TIGR02130 dapB_plant dihydrodi 24.7 1.8E+02 0.0039 25.0 5.2 39 45-89 72-111 (275)
70 cd00379 Ribosomal_L10_P0 Ribos 24.6 2.5E+02 0.0055 21.1 5.8 38 57-94 3-41 (155)
71 PF11848 DUF3368: Domain of un 24.2 1.4E+02 0.0031 18.0 3.4 28 60-93 20-47 (48)
72 PRK02220 4-oxalocrotonate taut 24.0 1.2E+02 0.0027 18.8 3.3 24 165-188 15-38 (61)
73 PRK00745 4-oxalocrotonate taut 24.0 98 0.0021 19.4 2.8 25 165-189 15-39 (62)
74 PF07071 DUF1341: Protein of u 23.8 1.7E+02 0.0037 24.1 4.6 48 44-95 152-200 (218)
75 PF01361 Tautomerase: Tautomer 23.1 1.3E+02 0.0027 18.8 3.2 24 165-188 14-37 (60)
76 PF03460 NIR_SIR_ferr: Nitrite 22.8 1.4E+02 0.003 19.2 3.5 37 58-94 23-67 (69)
77 PF02668 TauD: Taurine catabol 22.8 1.5E+02 0.0033 24.1 4.4 36 58-96 23-58 (258)
78 PF08823 PG_binding_2: Putativ 22.7 1.5E+02 0.0032 20.0 3.5 33 58-90 15-47 (74)
79 PRK04516 minC septum formation 22.6 1.6E+02 0.0034 24.7 4.4 44 43-87 46-90 (235)
80 PF07061 Swi5: Swi5; InterPro 22.6 2E+02 0.0044 19.9 4.3 35 158-193 43-77 (83)
81 cd00250 CAS_like Clavaminic ac 21.5 1.5E+02 0.0032 24.7 4.1 40 43-84 18-57 (262)
82 cd00491 4Oxalocrotonate_Tautom 21.2 93 0.002 19.1 2.2 25 164-188 13-37 (58)
83 PRK00339 minC septum formation 20.7 2.3E+02 0.0049 23.9 5.1 44 43-86 52-96 (249)
84 TIGR00013 taut 4-oxalocrotonat 20.6 1.4E+02 0.003 18.7 3.0 24 165-188 15-38 (63)
85 PRK02289 4-oxalocrotonate taut 20.5 91 0.002 19.7 2.1 24 165-188 15-38 (60)
No 1
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2e-50 Score=354.71 Aligned_cols=230 Identities=65% Similarity=1.118 Sum_probs=193.6
Q ss_pred hhhhhhHHhhhhccccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCCh
Q 042145 4 ATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPE 83 (233)
Q Consensus 4 ~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~ 83 (233)
++||..|+.|..++..||++|++|..++|.+..+..+..+||||||+.+.+.++.+++++|.+||++||||||+||||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~ 81 (348)
T PLN02912 2 ATSKLLVSDIASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPE 81 (348)
T ss_pred ccchhHHHHHhcCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCH
Confidence 67899999999999999999999998887532222122579999999986656778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCCccCCCCCCCCCch-HHHHH
Q 042145 84 TIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAE 162 (233)
Q Consensus 84 ~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~~~~ 162 (233)
++++++++++++||+||.|+|+++.........+|............||+|.+.+...+....+|.||..+++| +.+++
T Consensus 82 ~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~ 161 (348)
T PLN02912 82 ETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAE 161 (348)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHH
Confidence 99999999999999999999999644332223333222222234567999998876444333478999988899 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 163 YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 163 y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
|+++|.+++.+|+++|+++||+++++|.+++....+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 162 y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~ 232 (348)
T PLN02912 162 YATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDE 232 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECC
Confidence 99999999999999999999999999999887778899999999999887899999999999999999985
No 2
>PLN02904 oxidoreductase
Probab=100.00 E-value=1.2e-49 Score=350.69 Aligned_cols=230 Identities=37% Similarity=0.673 Sum_probs=193.1
Q ss_pred chhhhhhHHhhhh-ccccCCcccccCCCCCCCCc--ccCCCCCCCceEeCCCCCCc-cHHHHHHHHHHHhHhcceEEEec
Q 042145 3 AATTKLLLSDLAS-TVESVTSNYIRPISDRPNLT--EVQISDGSIPLIDLQVLDGP-RRLDLIKQIGQACHHDGFFQVKN 78 (233)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~--~~~~~~~~iPvIDls~l~~~-~~~~~~~~l~~A~~~~GFf~l~n 78 (233)
++.||-||++|++ +++.||.+|++|+.++|... ..... ..||||||+.+.++ .+.+++++|.+||++||||||+|
T Consensus 9 ~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~-~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~n 87 (357)
T PLN02904 9 LDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTST-ITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVIN 87 (357)
T ss_pred hhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccC-CCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEe
Confidence 4678999999997 89999999999999987531 11123 57999999988654 46778999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCCccCCCCCCCCCch-
Q 042145 79 HGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF- 157 (233)
Q Consensus 79 hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f- 157 (233)
|||+.++++++++++++||+||.|+|+++.......+.||+...........+|+|.+.....|....+|.||+.++.|
T Consensus 88 HGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr 167 (357)
T PLN02904 88 HGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYK 167 (357)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccchHHH
Confidence 9999999999999999999999999999865433344567543322233455788876654334333479999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 158 EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 158 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
+.+++|+++|.+++.+|+++|+++||+++++|.+.+..+.+.||++|||||+.++..+|+++|||+|+||||+||.
T Consensus 168 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd~ 243 (357)
T PLN02904 168 EKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQSS 243 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecCC
Confidence 9999999999999999999999999999999999887777889999999999888899999999999999999973
No 3
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-49 Score=351.18 Aligned_cols=223 Identities=30% Similarity=0.548 Sum_probs=192.1
Q ss_pred hhHHhhhh-ccccCCcccccCCCCCCCCc--ccCCCCCCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 8 LLLSDLAS-TVESVTSNYIRPISDRPNLT--EVQISDGSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 8 ~~~~~~~~-~~~~~p~~~~~p~~~~~~~~--~~~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.+|+.|++ +++.||.+|++|+.++|... ..... .+||||||+.+..+ ++.+++++|.+||++||||||+||||
T Consensus 15 ~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~-~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi 93 (361)
T PLN02758 15 DDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAP-DDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGI 93 (361)
T ss_pred ccHHHHHhcCCCCCCHHHcCCchhccccccccccCC-CCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCC
Confidence 45888885 89999999999998887532 11123 68999999998654 33567999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCC-ccCCCCCCCCCch-HH
Q 042145 82 PETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQ-DCMHEWPSNPPSF-EV 159 (233)
Q Consensus 82 ~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~-~~~~~wP~~~~~f-~~ 159 (233)
+.++++++++++++||+||.|+|+++.... ...+||+...........||+|.|.++..|.. ..+|.||+.+++| +.
T Consensus 94 ~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~ 172 (361)
T PLN02758 94 ELELLEEIEKVAREFFMLPLEEKQKYPMAP-GTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSET 172 (361)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcccC-CCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHHHH
Confidence 999999999999999999999999987543 46789965443334556799999998765532 3589999888899 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 160 VAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 160 ~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
+++|+++|++++..|+++|+++||+++++|.+.+..+.+.||++|||+|++++..+|+++|||+|+||||+||
T Consensus 173 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd 245 (361)
T PLN02758 173 LEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQG 245 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeC
Confidence 9999999999999999999999999999999998878889999999999998889999999999999999997
No 4
>PLN02947 oxidoreductase
Probab=100.00 E-value=2e-49 Score=350.69 Aligned_cols=226 Identities=40% Similarity=0.723 Sum_probs=191.3
Q ss_pred hhhHHhhhh-ccccCCcccccCCCCCCCCccc-----CCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccC
Q 042145 7 KLLLSDLAS-TVESVTSNYIRPISDRPNLTEV-----QISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHG 80 (233)
Q Consensus 7 ~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~~~-----~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhg 80 (233)
..||++|++ +++.||.+|++|+.++|..... ... .+||||||+.+.+.++.+++++|.+||++||||||+|||
T Consensus 25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~-~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHG 103 (374)
T PLN02947 25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGN-LKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHG 103 (374)
T ss_pred ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCC-CCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCC
Confidence 468999996 8999999999999988753210 133 689999999986545788999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCCccCCCCCCCCCch-HH
Q 042145 81 IPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EV 159 (233)
Q Consensus 81 i~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~ 159 (233)
|+.++++++++.+++||+||.|+|+++.........||+...........+|+|.+.+...|.....|.||+.+++| +.
T Consensus 104 Ip~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~ 183 (374)
T PLN02947 104 VPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKV 183 (374)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHHHH
Confidence 99999999999999999999999999865433345678654333344567999998876555444478999988899 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC---hhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 160 VAEYCTSVRGLVLKLLEAISESMGLQ---RDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 160 ~~~y~~~~~~l~~~ll~~i~~~Lgl~---~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
+++|+++|.+|+.+|+++|+++||++ .++|.+.+..+.+.||+||||||++++..+|+++|||+|+||||+||+
T Consensus 184 ~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~ 260 (374)
T PLN02947 184 AATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDE 260 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecC
Confidence 99999999999999999999999996 456777776677889999999999998899999999999999999985
No 5
>PLN02216 protein SRG1
Probab=100.00 E-value=4.5e-49 Score=347.19 Aligned_cols=224 Identities=27% Similarity=0.538 Sum_probs=191.0
Q ss_pred hhhHHhhhh--ccccCCcccccCCCCCCCCcc-cCCCCCCCceEeCCCCCCc-cHHHHHHHHHHHhHhcceEEEeccCCC
Q 042145 7 KLLLSDLAS--TVESVTSNYIRPISDRPNLTE-VQISDGSIPLIDLQVLDGP-RRLDLIKQIGQACHHDGFFQVKNHGIP 82 (233)
Q Consensus 7 ~~~~~~~~~--~~~~~p~~~~~p~~~~~~~~~-~~~~~~~iPvIDls~l~~~-~~~~~~~~l~~A~~~~GFf~l~nhgi~ 82 (233)
...|+.|+. +++.||++|++|..++|.... .... .+||||||+.+.++ .+++++++|.+||++||||||+||||+
T Consensus 14 ~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~-~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~ 92 (357)
T PLN02216 14 VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLS-SEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGID 92 (357)
T ss_pred chhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcC-CCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCC
Confidence 355888864 799999999999999875321 1112 48999999998655 346799999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCC-CccCCCCCCCCCch-HHH
Q 042145 83 ETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPL-QDCMHEWPSNPPSF-EVV 160 (233)
Q Consensus 83 ~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~~~f-~~~ 160 (233)
.++++++++++++||+||.|+|+++... ....+||+........+..||+|.|.++..|. ...+|.||+.++.| +.+
T Consensus 93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~ 171 (357)
T PLN02216 93 SSFLDKVKSEIQDFFNLPMEEKKKLWQR-PGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTL 171 (357)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhhcC-CCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHH
Confidence 9999999999999999999999998654 34678996654334456789999998875553 24589999988899 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcC-cCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 161 AEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGK-HGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 161 ~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~-~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
++|++.|.+++.+|+++|+++||+++++|.+.+.. ..+.||++|||||++++..+|+++|||+|+||||+||
T Consensus 172 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~ 244 (357)
T PLN02216 172 ETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQV 244 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEec
Confidence 99999999999999999999999999999998875 4578999999999998889999999999999999995
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=6.6e-48 Score=340.43 Aligned_cols=226 Identities=31% Similarity=0.577 Sum_probs=190.4
Q ss_pred hhhHHhhhh-ccccCCcccccCCCCCCCCccc------CCCCCCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEE
Q 042145 7 KLLLSDLAS-TVESVTSNYIRPISDRPNLTEV------QISDGSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQV 76 (233)
Q Consensus 7 ~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~~~------~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l 76 (233)
...|+.|++ ++..||..|++|+.+++..... ... .+||||||+.+.++ .+.+++++|.+||++||||||
T Consensus 5 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l 83 (360)
T PLN03178 5 VPRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAG-PQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHL 83 (360)
T ss_pred hhhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccC-CCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEE
Confidence 456889985 8999999999999888653211 123 58999999998664 367899999999999999999
Q ss_pred eccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCC-CCCCcccccccccCCCCcccccccccccccCC-CccCCCCCCCC
Q 042145 77 KNHGIPETIINNTLSIAGAFFKLPESERLKSYSDD-PSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPL-QDCMHEWPSNP 154 (233)
Q Consensus 77 ~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~ 154 (233)
+||||+.++++++++++++||+||.|+|+++.... ...++||+........+..||+|.+.....|. ...+|.||+.+
T Consensus 84 ~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~ 163 (360)
T PLN03178 84 VGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTP 163 (360)
T ss_pred EcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCc
Confidence 99999999999999999999999999999987643 23578996543333345678999876643342 23479999988
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhc---CcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEe
Q 042145 155 PSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALG---KHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLL 230 (233)
Q Consensus 155 ~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~---~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~ 230 (233)
++| +.+++|+++|.+++.+|+++|+++||+++++|.+.+. .+.+.||++|||+|+.++..+|+++|||+|+||||+
T Consensus 164 p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~ 243 (360)
T PLN03178 164 PDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFIL 243 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEe
Confidence 999 9999999999999999999999999999999999886 345679999999999888899999999999999999
Q ss_pred ecC
Q 042145 231 QDD 233 (233)
Q Consensus 231 qd~ 233 (233)
||+
T Consensus 244 qd~ 246 (360)
T PLN03178 244 HNM 246 (360)
T ss_pred eCC
Confidence 984
No 7
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=8.7e-48 Score=338.73 Aligned_cols=216 Identities=36% Similarity=0.668 Sum_probs=183.7
Q ss_pred ccccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCc--cHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHH
Q 042145 16 TVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGP--RRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIA 93 (233)
Q Consensus 16 ~~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~--~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~ 93 (233)
+++.||..|++|..++|.....+.. ..||||||+.+..+ .+.+++++|.+||++||||||+||||+.++++++++++
T Consensus 11 ~~~~~p~~~~~~~~~~~~~~~~~~~-~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~ 89 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKVAYNQFS-DEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLA 89 (358)
T ss_pred CCCcCCHHhcCCchhccCccccccC-CCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHH
Confidence 5789999999999888854222233 57999999988543 46789999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCC-CccCCCCCCCCCch-HHHHHHHHHHHHHH
Q 042145 94 GAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPL-QDCMHEWPSNPPSF-EVVAEYCTSVRGLV 171 (233)
Q Consensus 94 ~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~~~f-~~~~~y~~~~~~l~ 171 (233)
++||+||.|+|+++.... ...+||............||+|.|.+...|. ....|.||+.+++| +.+++|+++|.+|+
T Consensus 90 ~~FF~LP~eeK~k~~~~~-~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~ 168 (358)
T PLN02515 90 RDFFALPAEEKLRFDMSG-GKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLA 168 (358)
T ss_pred HHHhcCCHHHHhhhCcCC-CCccCcccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999986654 3457995332223345689999997754443 23469999988899 99999999999999
Q ss_pred HHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 172 LKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 172 ~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
..|+++++++||+++++|.+.+....+.+|++|||+|+.++..+|+++|||+|+||||+||+
T Consensus 169 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~ 230 (358)
T PLN02515 169 CKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQ 230 (358)
T ss_pred HHHHHHHHHhcCCChhhHHHhhcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCC
Confidence 99999999999999999999887777889999999999888899999999999999999985
No 8
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.5e-47 Score=337.28 Aligned_cols=211 Identities=28% Similarity=0.491 Sum_probs=178.4
Q ss_pred ccccCCcccccCCCCCC--CCccc-CCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHH
Q 042145 16 TVESVTSNYIRPISDRP--NLTEV-QISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSI 92 (233)
Q Consensus 16 ~~~~~p~~~~~p~~~~~--~~~~~-~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~ 92 (233)
++..||.+|++|..+++ ..... ...+.+||||||+. .+.+++|.+||++||||||+||||+.++++++++.
T Consensus 26 ~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~------~~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~ 99 (358)
T PLN02254 26 SLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSD------PNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQ 99 (358)
T ss_pred hhccCChhhcCChhhccCccccccccCcCCCCCeEeCCC------HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHH
Confidence 45679999999998883 22110 11215799999985 35799999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCCccCCCCCCCCCch-HHHHHHHHHHHHHH
Q 042145 93 AGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAEYCTSVRGLV 171 (233)
Q Consensus 93 ~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~~~~y~~~~~~l~ 171 (233)
+++||+||.|+|+++... ...++||+.........+.||+|.|.+...|.....|.||+.+++| +.+++|+++|++|+
T Consensus 100 ~~~FF~LP~EeK~k~~~~-~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~ 178 (358)
T PLN02254 100 TRRLFSLPAQRKLKAARS-PDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLA 178 (358)
T ss_pred HHHHHcCCHHHHHhhccC-CCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999998654 3467899765433344567999999986655434579999988999 99999999999999
Q ss_pred HHHHHHHHHHcCCChhHHHHHh-----cCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 172 LKLLEAISESMGLQRDYIDKAL-----GKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 172 ~~ll~~i~~~Lgl~~~~~~~~~-----~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
.+|+++|+++||+++++|.+.+ ..+.+.||+||||||++++..+|+++|||+|+||||+||+
T Consensus 179 ~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~ 245 (358)
T PLN02254 179 ERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSN 245 (358)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCC
Confidence 9999999999999999998765 3556789999999999988899999999999999999984
No 9
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=1.8e-47 Score=337.81 Aligned_cols=224 Identities=33% Similarity=0.611 Sum_probs=189.9
Q ss_pred hhhHHhhhh-ccccCCcccccCCCCCCCCc---ccCCCCCCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEEecc
Q 042145 7 KLLLSDLAS-TVESVTSNYIRPISDRPNLT---EVQISDGSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQVKNH 79 (233)
Q Consensus 7 ~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~---~~~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l~nh 79 (233)
.++|+.|+. ++.+||..|++|+.+++... ..... ++||||||+.+.++ .+.+++++|.+||++||||||+||
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nH 90 (362)
T PLN02393 12 IVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAE-INIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNH 90 (362)
T ss_pred cchHHHHHhcCCCcCCHHHcCCchhccccccccccCcC-CCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeC
Confidence 467899975 89999999999998887431 11233 78999999998764 368899999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCC-CccCCCCCCCCCch-
Q 042145 80 GIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPL-QDCMHEWPSNPPSF- 157 (233)
Q Consensus 80 gi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~~~f- 157 (233)
||+.++++++++.+++||+||.|+|+++.... ..++||+...........||+|.|.++..+. ...+|.||..+++|
T Consensus 91 GI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~-~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr 169 (362)
T PLN02393 91 GVRPELMDRAREAWREFFHLPLEVKQRYANSP-ATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCR 169 (362)
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHhhhccc-CcccccccccccccccccCchhheeeeecCccccchhhCcccchHHH
Confidence 99999999999999999999999999987543 4578995432223345689999988764432 24579999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcC---cCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 158 EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGK---HGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 158 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~---~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
+.+++|+++|.+++..|+++++++||+++++|.+.+.. +.+.||++|||+|++++..+|+++|||+|+||||+||
T Consensus 170 ~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~ 247 (362)
T PLN02393 170 ELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPD 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEeeC
Confidence 99999999999999999999999999999999998764 3368999999999988889999999999999999985
No 10
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4e-47 Score=332.86 Aligned_cols=213 Identities=57% Similarity=1.078 Sum_probs=178.2
Q ss_pred cccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHh
Q 042145 17 VESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAF 96 (233)
Q Consensus 17 ~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~f 96 (233)
...||+.|++|+.++|........ .+||||||+.. ++++++++|.+||++||||||+||||+.++++++++.+++|
T Consensus 12 ~~~~p~~~~~~~~~~p~~~~~~~~-~~iPvIDls~~---~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~f 87 (337)
T PLN02639 12 HTTLPESYVRPESERPRLSEVSTC-ENVPVIDLGSP---DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEF 87 (337)
T ss_pred cCcCCHHhcCCchhcccccccccC-CCCCeEECCCc---cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 389999999999888753211233 68999999974 36789999999999999999999999999999999999999
Q ss_pred hcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCCccCCCCCCCCCch-HHHHHHHHHHHHHHHHHH
Q 042145 97 FKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLL 175 (233)
Q Consensus 97 F~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll 175 (233)
|+||.|+|+++.........+|+.......+...+|+|.+.+...|....+|.||+.++.| +.+++|+++|.+++.+|+
T Consensus 88 F~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll 167 (337)
T PLN02639 88 FRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQ 167 (337)
T ss_pred hcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999765432222233222222334567899998875555433468999888899 999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 176 EAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 176 ~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
++++++||+++++|.+.+..+.+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 168 ~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~ 225 (337)
T PLN02639 168 EAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQ 225 (337)
T ss_pred HHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecC
Confidence 9999999999999999888778899999999999888889999999999999999973
No 11
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=8e-47 Score=333.52 Aligned_cols=212 Identities=30% Similarity=0.520 Sum_probs=181.3
Q ss_pred ccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHH
Q 042145 18 ESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAG 94 (233)
Q Consensus 18 ~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~ 94 (233)
+.||..|++|..++|... ... .+||||||+.+.++ .+.+++++|.+||++||||||+||||+.++++++++.++
T Consensus 18 ~~vp~~~~~~~~~~p~~~--~~~-~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~ 94 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSAA--VPE-LAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMD 94 (361)
T ss_pred CCCCHHhcCCccccCCCC--CcC-CCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 579999999998887531 123 68999999998653 457799999999999999999999999999999999999
Q ss_pred HhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCC--------ccCCCCCCCCCch-HHHHHHHH
Q 042145 95 AFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQ--------DCMHEWPSNPPSF-EVVAEYCT 165 (233)
Q Consensus 95 ~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~--------~~~~~wP~~~~~f-~~~~~y~~ 165 (233)
+||+||.|+|+++... ....+||............||+|.|.++..+.. ..+|.||...++| +.+++|+.
T Consensus 95 ~FF~LP~eeK~k~~~~-~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~ 173 (361)
T PLN02276 95 AFFKLPLSEKQRAQRK-PGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCE 173 (361)
T ss_pred HHHcCCHHHHHhhccC-CCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHH
Confidence 9999999999998654 346789966443333456799999999754321 1246788766789 99999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 166 SVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 166 ~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
.|.+++..|+++|+++||+++++|.+++..+.+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 174 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~ 241 (361)
T PLN02276 174 AMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQ 241 (361)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecC
Confidence 99999999999999999999999999988888899999999999888899999999999999999985
No 12
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4e-46 Score=327.40 Aligned_cols=221 Identities=26% Similarity=0.479 Sum_probs=181.9
Q ss_pred HHhhhhccccCCcccccCCCCCCC---CcccCCCCCCCceEeCCCCCCc--cHHHHHHHHHHHhHhcceEEEeccCCChH
Q 042145 10 LSDLASTVESVTSNYIRPISDRPN---LTEVQISDGSIPLIDLQVLDGP--RRLDLIKQIGQACHHDGFFQVKNHGIPET 84 (233)
Q Consensus 10 ~~~~~~~~~~~p~~~~~p~~~~~~---~~~~~~~~~~iPvIDls~l~~~--~~~~~~~~l~~A~~~~GFf~l~nhgi~~~ 84 (233)
|++|.+--..+|+.|++|+.+.+. ....... ++||||||+.+.++ .+..++++|.+||++||||||+||||+.+
T Consensus 9 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~ 87 (348)
T PLN00417 9 VQEVVAAGEGLPERYLHTPTGDGEGQPLNGAVPE-MDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEA 87 (348)
T ss_pred HHHHHhCCCCCCccccCCcccccccccccccccC-CCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHH
Confidence 566654225899999999988532 1111233 68999999988654 33456799999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCC-ccCCCCCCCCCch-HHHHH
Q 042145 85 IINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQ-DCMHEWPSNPPSF-EVVAE 162 (233)
Q Consensus 85 ~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~-~~~~~wP~~~~~f-~~~~~ 162 (233)
+++++++.+++||+||.|+|+++.... ...+||+........+..||+|.+.++..|.. ...|.||+.+++| +.+++
T Consensus 88 l~~~~~~~~~~FF~LP~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~ 166 (348)
T PLN00417 88 FLDKIYKLTKQFFALPTEEKQKCAREI-GSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHE 166 (348)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhcCC-CCccccccccccccCCCcCccceeecccCCcccccccccccccHHHHHHHHH
Confidence 999999999999999999999997653 35789966432233556799998877644422 3469999988899 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCc-CcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 163 YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKH-GQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 163 y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~-~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
|+.+|.+++.+|+++|+++||+++++|.+.+..+ .+.||++|||||+.++..+|+++|||+|+||||+||
T Consensus 167 y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd 237 (348)
T PLN00417 167 YTMKQRLVIEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPD 237 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEec
Confidence 9999999999999999999999999999988653 457999999999988888999999999999999996
No 13
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.8e-46 Score=327.67 Aligned_cols=212 Identities=33% Similarity=0.602 Sum_probs=179.6
Q ss_pred ccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhh
Q 042145 18 ESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFF 97 (233)
Q Consensus 18 ~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF 97 (233)
..+|..|++|..++|.... ..++..||||||+.+...++.+++++|.+||++||||||+||||+.++++++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF 80 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHL-TNSDEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFF 80 (345)
T ss_pred CCCCHHHcCCchhccCccc-cccCCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 5789999999988875321 112268999999986544678889999999999999999999999999999999999999
Q ss_pred cCCHHHHhhccCCCCCCCcccccccccCCCCccccccccccccc-----CC-----C----ccCCCCCCCCCch-HHHHH
Q 042145 98 KLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCY-----PL-----Q----DCMHEWPSNPPSF-EVVAE 162 (233)
Q Consensus 98 ~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~-----p~-----~----~~~~~wP~~~~~f-~~~~~ 162 (233)
+||.|+|+++.... .+.+||.... ...+..||+|.|.++.. |. . ..+|.||+.+++| +.+++
T Consensus 81 ~LP~eeK~~~~~~~-~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~ 157 (345)
T PLN02750 81 DQTTEEKRKVKRDE-VNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQE 157 (345)
T ss_pred cCCHHHHHhhccCC-CCccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHH
Confidence 99999999986543 3457995321 22345699999988642 10 0 1268999888899 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 163 YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 163 y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
|++.|.+|+.+|+++|+++||+++++|.+++..+.+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 158 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 228 (345)
T PLN02750 158 YARQVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDD 228 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCC
Confidence 99999999999999999999999999999998888899999999998877889999999999999999985
No 14
>PLN02704 flavonol synthase
Probab=100.00 E-value=9.8e-46 Score=323.87 Aligned_cols=222 Identities=32% Similarity=0.578 Sum_probs=183.7
Q ss_pred hHHhhhh-c--cccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHH
Q 042145 9 LLSDLAS-T--VESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETI 85 (233)
Q Consensus 9 ~~~~~~~-~--~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~ 85 (233)
+|+.+++ + ...||..|++|..++|...+...++.+||||||+.. ++.+++++|.+||++||||||+||||+.++
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~---~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l 81 (335)
T PLN02704 5 RVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP---DEEKLTRLIAEASKEWGMFQIVNHGIPSEV 81 (335)
T ss_pred hHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc---cHHHHHHHHHHHHHHcCEEEEEcCCCCHHH
Confidence 5677765 4 799999999999999865332323268999999974 346789999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHhhccCCC-CCCCcccccccccCCCCcccccccccccccCC-CccCCCCCCCCCch-HHHHH
Q 042145 86 INNTLSIAGAFFKLPESERLKSYSDD-PSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPL-QDCMHEWPSNPPSF-EVVAE 162 (233)
Q Consensus 86 ~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~~~f-~~~~~ 162 (233)
++++++++++||+||.|+|+++.... ...++||+...........+|+|.+.....|. ....|.||..++.| +.+++
T Consensus 82 ~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~ 161 (335)
T PLN02704 82 ISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNEE 161 (335)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccccchhHHHHHH
Confidence 99999999999999999999987643 33568996553333455678888765432221 23468999888899 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcC--cCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 163 YCTSVRGLVLKLLEAISESMGLQRDYIDKALGK--HGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 163 y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~--~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
|+++|.+++.+|+++|+++||+++++|.+.+.. ..+.||++|||||++++..+|+++|||+|+||||+||+
T Consensus 162 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~ 234 (335)
T PLN02704 162 YAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNE 234 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecCC
Confidence 999999999999999999999999999988753 24579999999999888899999999999999999985
No 15
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=2.1e-45 Score=308.15 Aligned_cols=191 Identities=28% Similarity=0.467 Sum_probs=176.3
Q ss_pred CCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCccc
Q 042145 42 GSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRL 118 (233)
Q Consensus 42 ~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY 118 (233)
..||+|||+.+... ++..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++........+||
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY 83 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGY 83 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcccccc
Confidence 68999999998764 689999999999999999999999999999999999999999999999999998877789999
Q ss_pred ccccccCCCCcccccccccccccC-----------CCccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 042145 119 STSFNVNTKKVSNWRDYLRLHCYP-----------LQDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQR 186 (233)
Q Consensus 119 ~~~~~~~~~~~~d~~E~~~~~~~p-----------~~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~ 186 (233)
.....+.+.+..||+|.+.++.+- ..+++|+|| ..+++ +.+..|+++|.+++.+||+.||++|+|++
T Consensus 84 ~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~~ 162 (322)
T COG3491 84 TPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPE 162 (322)
T ss_pred ccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 877666677778999999998641 125799999 88999 99999999999999999999999999999
Q ss_pred hHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 187 DYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 187 ~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
++|+..++++.++||++|||+.+..+...|.|+|||+|+||||+||+
T Consensus 163 d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~ 209 (322)
T COG3491 163 DFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDD 209 (322)
T ss_pred hhhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEecc
Confidence 99999988999999999999998888888899999999999999995
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=3.1e-44 Score=312.99 Aligned_cols=192 Identities=27% Similarity=0.440 Sum_probs=166.1
Q ss_pred CCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCccc
Q 042145 42 GSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRL 118 (233)
Q Consensus 42 ~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY 118 (233)
++||||||+.+.++ ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++...+....+||
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY 83 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGY 83 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCC
Confidence 78999999998654 456789999999999999999999999999999999999999999999999866555567899
Q ss_pred cccccc--CCCCccccccccccccc-CC----------CccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 042145 119 STSFNV--NTKKVSNWRDYLRLHCY-PL----------QDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGL 184 (233)
Q Consensus 119 ~~~~~~--~~~~~~d~~E~~~~~~~-p~----------~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl 184 (233)
...... ......||+|.|.++.. |. ...+|.||..++.| +.+++|+++|.+++.+|+++|+++||+
T Consensus 84 ~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 163 (320)
T PTZ00273 84 GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGL 163 (320)
T ss_pred CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 654321 22345799999998642 11 12479999888899 999999999999999999999999999
Q ss_pred ChhHHHHHhcCcCcceeEeeeCCCCCC-CCcCCCCCccCCCceeEEeecC
Q 042145 185 QRDYIDKALGKHGQQMALNYCPPCPQP-DLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 185 ~~~~~~~~~~~~~~~lrll~YPp~~~~-~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
++++|.+.+..+.+.||++||||++.+ +..+|+++|||+|+||||+||+
T Consensus 164 ~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~ 213 (320)
T PTZ00273 164 REDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDS 213 (320)
T ss_pred CHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCC
Confidence 999999998888889999999999864 4679999999999999999984
No 17
>PLN02485 oxidoreductase
Probab=100.00 E-value=1e-43 Score=310.72 Aligned_cols=191 Identities=28% Similarity=0.444 Sum_probs=162.2
Q ss_pred CCCceEeCCCCCCc----------cHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCC
Q 042145 42 GSIPLIDLQVLDGP----------RRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDD 111 (233)
Q Consensus 42 ~~iPvIDls~l~~~----------~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 111 (233)
..||||||+.+..+ ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 58999999988531 34678999999999999999999999999999999999999999999999987655
Q ss_pred CCCCcccccccccCCCCccccccccccccc--CC--------CccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHH
Q 042145 112 PSKSKRLSTSFNVNTKKVSNWRDYLRLHCY--PL--------QDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISE 180 (233)
Q Consensus 112 ~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~--p~--------~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~ 180 (233)
....+||.........+..|++|.|.++.. +. ...+|.||+.+++| +.+++|+++|.+++.+|+++|++
T Consensus 86 ~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a~ 165 (329)
T PLN02485 86 AAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIAL 165 (329)
T ss_pred CCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789965433333456799999987642 11 13479999988899 99999999999999999999999
Q ss_pred HcCCChhHHHHHh-cCcCcceeEeeeCCCCC----CCCcCCCCCccCCCceeEEeec
Q 042145 181 SMGLQRDYIDKAL-GKHGQQMALNYCPPCPQ----PDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 181 ~Lgl~~~~~~~~~-~~~~~~lrll~YPp~~~----~~~~~g~~~HtD~g~lTlL~qd 232 (233)
+||+++++|.+.+ ..+.+.||++||||++. ++..+|+++|||+|+||||+||
T Consensus 166 ~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd 222 (329)
T PLN02485 166 ALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQD 222 (329)
T ss_pred HcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEecc
Confidence 9999999998765 45567899999999975 4568999999999999999996
No 18
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=7.5e-43 Score=303.65 Aligned_cols=184 Identities=29% Similarity=0.541 Sum_probs=158.4
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
.+||||||+.+...++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.. ..+||...
T Consensus 5 ~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~----~~~gy~~~ 80 (321)
T PLN02299 5 ESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMV----ASKGLEGV 80 (321)
T ss_pred CCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhccc----CCCCcccc
Confidence 68999999998655677899999999999999999999999999999999999999999999999743 23577432
Q ss_pred cccCCCCcccccccccccccCCCccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcC---cC
Q 042145 122 FNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGK---HG 197 (233)
Q Consensus 122 ~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~---~~ 197 (233)
. ......||+|.|.++..|. ...+.||+.+++| +.+++|+++|.+++.+|+++|+++||+++++|.+.+.. +.
T Consensus 81 ~--~~~~~~d~ke~~~~~~~~~-~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~ 157 (321)
T PLN02299 81 Q--TEVEDLDWESTFFLRHLPE-SNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPT 157 (321)
T ss_pred c--ccCCCcCHHHHcccccCCc-cccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCcc
Confidence 1 1224569999998864442 2468899988899 99999999999999999999999999999999988742 34
Q ss_pred cceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 198 QQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 198 ~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
..||++|||||+.++..+|+++|||+|+||||+||
T Consensus 158 ~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd 192 (321)
T PLN02299 158 FGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQD 192 (321)
T ss_pred ceeeeEecCCCCCcccccCccCccCCCeEEEEEec
Confidence 57999999999988878999999999999999996
No 19
>PLN02997 flavonol synthase
Probab=100.00 E-value=1e-42 Score=303.04 Aligned_cols=184 Identities=28% Similarity=0.547 Sum_probs=159.9
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
..||||||+.+ ++++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||...
T Consensus 31 ~~IPvIDls~~---~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~--~~~~GY~~~ 105 (325)
T PLN02997 31 VDVPVVDLSVS---DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE--EDFEGYKRN 105 (325)
T ss_pred CCCCeEECCCC---CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC--CCccccCcc
Confidence 68999999975 3578999999999999999999999999999999999999999999999998653 357899654
Q ss_pred cccCCCCcccccccccccccCC-CccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCc--C
Q 042145 122 FNVNTKKVSNWRDYLRLHCYPL-QDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKH--G 197 (233)
Q Consensus 122 ~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~--~ 197 (233)
. ..+..||+|.+.....|. ....|.||..+++| +.+++|++.|.+++.+|+++|+++||+++++|.+.+... .
T Consensus 106 ~---~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~~~ 182 (325)
T PLN02997 106 Y---LGGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGETAE 182 (325)
T ss_pred c---ccCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCccc
Confidence 3 245678999876543332 23468999988999 999999999999999999999999999999999988633 3
Q ss_pred cceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 198 QQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 198 ~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 183 ~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~ 218 (325)
T PLN02997 183 YVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNE 218 (325)
T ss_pred ceeeeecCCCCCCcccccCccCccCCCceEEEecCC
Confidence 579999999999888889999999999999999985
No 20
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.2e-42 Score=302.30 Aligned_cols=187 Identities=24% Similarity=0.397 Sum_probs=157.7
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
.+||+|||+.. ++..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||...
T Consensus 13 ~~iP~IDl~~~---~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~--~~~~GY~~~ 87 (332)
T PLN03002 13 SSLNCIDLAND---DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN--EKHRGYTPV 87 (332)
T ss_pred CCCCEEeCCch---hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC--CCCCCcCcc
Confidence 58999999963 3567899999999999999999999999999999999999999999999998543 357899654
Q ss_pred cccCC----CCccccccccccccc-CCC--------ccCCCCCCC--CCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 042145 122 FNVNT----KKVSNWRDYLRLHCY-PLQ--------DCMHEWPSN--PPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQ 185 (233)
Q Consensus 122 ~~~~~----~~~~d~~E~~~~~~~-p~~--------~~~~~wP~~--~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~ 185 (233)
..... ....||+|.|.++.. |.. ..+|.||.. .++| +.+++|+++|.+|+..|+++|+++||++
T Consensus 88 ~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 167 (332)
T PLN03002 88 LDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLD 167 (332)
T ss_pred cccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 32111 123799999988743 211 237999974 6889 9999999999999999999999999999
Q ss_pred hhHHHH--HhcCcCcceeEeeeCCCCCCC-CcCCCCCccCCCceeEEeecC
Q 042145 186 RDYIDK--ALGKHGQQMALNYCPPCPQPD-LTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 186 ~~~~~~--~~~~~~~~lrll~YPp~~~~~-~~~g~~~HtD~g~lTlL~qd~ 233 (233)
+++|.+ .+..+.+.||++|||||+.++ ..+|+++|||+|+||||+||+
T Consensus 168 ~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~ 218 (332)
T PLN03002 168 VGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDG 218 (332)
T ss_pred hHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCC
Confidence 999986 345566789999999998765 479999999999999999984
No 21
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=4.8e-42 Score=298.04 Aligned_cols=190 Identities=44% Similarity=0.766 Sum_probs=168.7
Q ss_pred CCCceEeCCCCCCc--cHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccc
Q 042145 42 GSIPLIDLQVLDGP--RRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLS 119 (233)
Q Consensus 42 ~~iPvIDls~l~~~--~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~ 119 (233)
..||||||+.+... .+..++++|.+||++||||+|+||||+.++++++++.+++||+||.|+|+++..... ...||+
T Consensus 16 ~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~-~~~gY~ 94 (322)
T KOG0143|consen 16 LDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPG-KYRGYG 94 (322)
T ss_pred CCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCC-Cccccc
Confidence 68999999987654 378889999999999999999999999999999999999999999999999977643 679997
Q ss_pred cccccCCCCcccccccccccccCCC-ccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcC-c
Q 042145 120 TSFNVNTKKVSNWRDYLRLHCYPLQ-DCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGK-H 196 (233)
Q Consensus 120 ~~~~~~~~~~~d~~E~~~~~~~p~~-~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~-~ 196 (233)
...........+|.+.+.+...|.. ...+.||+.++.| +.|++|.+++.+++..|+++++++||++.+++.+.+.. .
T Consensus 95 ~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~ 174 (322)
T KOG0143|consen 95 TSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETG 174 (322)
T ss_pred ccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCcc
Confidence 7665444467999999987666642 4689999999999 99999999999999999999999999998777777765 4
Q ss_pred CcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 197 GQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 197 ~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
.+.||+||||||++|+..+|+++|||.|+||||.||
T Consensus 175 ~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd 210 (322)
T KOG0143|consen 175 GQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQD 210 (322)
T ss_pred ceEEEEeecCCCcCccccccccCccCcCceEEEEcc
Confidence 668999999999999999999999999999999998
No 22
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=8.8e-42 Score=294.48 Aligned_cols=183 Identities=31% Similarity=0.540 Sum_probs=153.5
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
++||||||+.+...++++++++|.+||++||||||+||||+.++++++++.+++||+||.++|.. ... ...++...
T Consensus 1 ~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~---~~~~~~~~ 76 (303)
T PLN02403 1 MEIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESE---IAKALDNE 76 (303)
T ss_pred CCCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-ccc---ccCccccc
Confidence 36999999988655677899999999999999999999999999999999999999999999862 111 11122111
Q ss_pred cccCCCCcccccccccccccCCCccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhc---CcC
Q 042145 122 FNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALG---KHG 197 (233)
Q Consensus 122 ~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~---~~~ 197 (233)
......||+|.|.++..|. ...|.||+.+++| +.+++|+++|++++..|+++++++||+++++|.+.+. .+.
T Consensus 77 ---~~~~~~d~kE~~~~~~~p~-~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~ 152 (303)
T PLN02403 77 ---GKTSDVDWESSFFIWHRPT-SNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPS 152 (303)
T ss_pred ---CCCCCccHhhhcccccCCc-cchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCcc
Confidence 1233569999999876553 2468899888999 9999999999999999999999999999999998875 234
Q ss_pred cceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 198 QQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 198 ~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
+.||++||||+++++..+|+++|||+|+||||+||
T Consensus 153 ~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~ 187 (303)
T PLN02403 153 VGTKVAKYPECPRPELVRGLREHTDAGGIILLLQD 187 (303)
T ss_pred ceeeeEcCCCCCCcccccCccCccCCCeEEEEEec
Confidence 46999999999887778899999999999999997
No 23
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=9.9e-41 Score=291.43 Aligned_cols=182 Identities=27% Similarity=0.445 Sum_probs=152.7
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
.+||||||+. .+..++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... +.+||+..
T Consensus 25 ~~iPvIDls~------~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~---~~~Gy~~~ 95 (335)
T PLN02156 25 VLIPVIDLTD------SDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP---DPFGYGTK 95 (335)
T ss_pred CCCCcccCCC------hHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC---CCcccCcc
Confidence 5799999985 23578999999999999999999999999999999999999999999998543 34599543
Q ss_pred cccCCCCcccccccccccccCCC---ccCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhHHHHHhc--
Q 042145 122 FNVNTKKVSNWRDYLRLHCYPLQ---DCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQ-RDYIDKALG-- 194 (233)
Q Consensus 122 ~~~~~~~~~d~~E~~~~~~~p~~---~~~~~wP~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~-~~~~~~~~~-- 194 (233)
. .......+|+|.|.+...+.. ..+|.||..++.| +.+++|++.|.+++.+|+++|+++||++ +++|.+++.
T Consensus 96 ~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~ 174 (335)
T PLN02156 96 R-IGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVK 174 (335)
T ss_pred c-cCCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCC
Confidence 2 222345699999988765432 1368999888899 9999999999999999999999999996 478888764
Q ss_pred CcCcceeEeeeCCCCCC--CCcCCCCCccCCCceeEEeecC
Q 042145 195 KHGQQMALNYCPPCPQP--DLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 195 ~~~~~lrll~YPp~~~~--~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
.+.+.||+||||||+.. +..+|+++|||+|+||||+||+
T Consensus 175 ~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~ 215 (335)
T PLN02156 175 ESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSND 215 (335)
T ss_pred CccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCC
Confidence 34578999999999853 2479999999999999999985
No 24
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=9.7e-41 Score=292.12 Aligned_cols=184 Identities=23% Similarity=0.403 Sum_probs=148.5
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCC--CCCcccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDP--SKSKRLS 119 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~--~~~~GY~ 119 (233)
.+||+|||+.+ .+++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++..... ....||.
T Consensus 37 ~~IPvIDls~~-------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~ 109 (341)
T PLN02984 37 IDIPVIDMECL-------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTP 109 (341)
T ss_pred CCCCeEeCcHH-------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcc
Confidence 56999999974 35899999999999999999999999999999999999999999999852221 1122331
Q ss_pred cccccC-------CCCcccccccccccccCCCccCCCC---CCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCC--h
Q 042145 120 TSFNVN-------TKKVSNWRDYLRLHCYPLQDCMHEW---PSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQ--R 186 (233)
Q Consensus 120 ~~~~~~-------~~~~~d~~E~~~~~~~p~~~~~~~w---P~~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~--~ 186 (233)
...... .....||+|.|.++..+... .+.| |...++| +.+++|+++|.+++.+|+++||++||++ +
T Consensus 110 ~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~-~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~ 188 (341)
T PLN02984 110 ALTPSGKALSRGPQESNVNWVEGFNIPLSSLSL-LQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSG 188 (341)
T ss_pred cccccccccccccccCCCCeeeEEeCcCCchhh-hhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence 111100 01247999999987543211 1122 2235789 9999999999999999999999999999 9
Q ss_pred hHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 187 DYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 187 ~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
++|.+++..+.+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 189 ~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~ 235 (341)
T PLN02984 189 DQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDE 235 (341)
T ss_pred hHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCC
Confidence 99999988888899999999999877789999999999999999985
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=2.8e-39 Score=279.16 Aligned_cols=175 Identities=23% Similarity=0.400 Sum_probs=144.5
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
..||||||+.+. +.+++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||...
T Consensus 4 ~~iPvIDls~~~-----~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~--~~~~GY~~~ 76 (300)
T PLN02365 4 VNIPTIDLEEFP-----GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDV--ILGSGYMAP 76 (300)
T ss_pred CCCCEEEChhhH-----HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCC--CCCCCCCCc
Confidence 579999999862 3469999999999999999999999999999999999999999999996432 245799543
Q ss_pred cccCCCCcccccccccccccCCCccCCCCCC---CCCch-HHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHhcCc
Q 042145 122 FNVNTKKVSNWRDYLRLHCYPLQDCMHEWPS---NPPSF-EVVAEYCTSVRGLVLKLLEAISESMGL-QRDYIDKALGKH 196 (233)
Q Consensus 122 ~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~---~~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl-~~~~~~~~~~~~ 196 (233)
. ...+++|.+.+.........+.||. .+++| +.+++|+++|.+++.+|+++|+++||+ ++++|.+.
T Consensus 77 ~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~---- 147 (300)
T PLN02365 77 S-----EVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW---- 147 (300)
T ss_pred C-----CCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc----
Confidence 2 2246888887752111111233442 45789 999999999999999999999999999 88888763
Q ss_pred CcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeec
Q 042145 197 GQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232 (233)
Q Consensus 197 ~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 232 (233)
.+.||++||||++.++..+|+++|||+|+||||+||
T Consensus 148 ~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd 183 (300)
T PLN02365 148 PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDD 183 (300)
T ss_pred ccceeeeecCCCCCccccccccCccCCCceEEEecC
Confidence 467999999999888888999999999999999997
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=6.9e-30 Score=216.33 Aligned_cols=144 Identities=40% Similarity=0.738 Sum_probs=121.5
Q ss_pred HHHHHHhhc-CCHHHHhhccCCCC-CCCccccccccc--CCCCcccccccccccccCCC-ccCCCCCCCCCch-HHHHHH
Q 042145 90 LSIAGAFFK-LPESERLKSYSDDP-SKSKRLSTSFNV--NTKKVSNWRDYLRLHCYPLQ-DCMHEWPSNPPSF-EVVAEY 163 (233)
Q Consensus 90 ~~~~~~fF~-lp~e~K~~~~~~~~-~~~~GY~~~~~~--~~~~~~d~~E~~~~~~~p~~-~~~~~wP~~~~~f-~~~~~y 163 (233)
...+++||+ ||.|+|+++..... ...+||+..... ......||+|.|.+...|.. ..+|.||+.++.| +.+++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 578899997 99999999876542 347899544321 12335699999998654432 3479999988999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145 164 CTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233 (233)
Q Consensus 164 ~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~ 233 (233)
+++|.+++.+|+++|+++||+++++|.+.+....+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus 82 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~ 151 (262)
T PLN03001 82 GDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDD 151 (262)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCC
Confidence 9999999999999999999999999999887777789999999999888899999999999999999985
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.92 E-value=9.1e-26 Score=168.76 Aligned_cols=107 Identities=30% Similarity=0.534 Sum_probs=87.3
Q ss_pred CceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccc
Q 042145 44 IPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFN 123 (233)
Q Consensus 44 iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~ 123 (233)
||||||+. ....+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||.....
T Consensus 1 iPvIDls~-~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~--~~~~Gy~~~~~ 77 (116)
T PF14226_consen 1 IPVIDLSP-DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS--PSYRGYSPPGS 77 (116)
T ss_dssp --EEEHGG-CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC--TTCSEEEESEE
T ss_pred CCeEECCC-CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC--CCCcccccCCc
Confidence 79999997 2236899999999999999999999999999999999999999999999999999544 48999976544
Q ss_pred cCCC-Cccccccccccccc-CC-------CccCCCCCCC
Q 042145 124 VNTK-KVSNWRDYLRLHCY-PL-------QDCMHEWPSN 153 (233)
Q Consensus 124 ~~~~-~~~d~~E~~~~~~~-p~-------~~~~~~wP~~ 153 (233)
.... +..||+|.|.++.. +. ...+|.||++
T Consensus 78 ~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 78 ESTDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp ECCTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred cccCCCCCCceEEeEEECCCCccccccccccCCCCCCCC
Confidence 4444 48999999999876 32 2468999963
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.90 E-value=4.4e-23 Score=154.90 Aligned_cols=110 Identities=27% Similarity=0.536 Sum_probs=89.8
Q ss_pred hHHhhhhccccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCc--cHHHHHHHHHHHhHhcceEEEeccCCChHHH
Q 042145 9 LLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGP--RRLDLIKQIGQACHHDGFFQVKNHGIPETII 86 (233)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~--~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~ 86 (233)
.|+.|.+. ..+|..|++|..++|........ .+||||||+.+..+ .+.+++++|.+||++||||||+||||+.+++
T Consensus 5 ~~~~l~~~-~~~p~~~~~~~~~~p~~~~~~~~-~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~eli 82 (120)
T PLN03176 5 TLTALAEE-KTLQASFVRDEDERPKVAYNQFS-NEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLV 82 (120)
T ss_pred HHHHHhcc-CCCCHhhcCChhhCcCccccccC-CCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHH
Confidence 34555543 78999999999888843211222 57999999998654 4567899999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccc
Q 042145 87 NNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121 (233)
Q Consensus 87 ~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~ 121 (233)
+++++.+++||+||.++|+++...+ ....||+..
T Consensus 83 d~~~~~~~~FF~LP~e~K~k~~~~~-~~~~gy~~~ 116 (120)
T PLN03176 83 SEMTTLAKEFFALPPEEKLRFDMSG-GKKGGFIVS 116 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHhcccCC-CccCCcchh
Confidence 9999999999999999999987665 456799554
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.84 E-value=6.4e-06 Score=59.19 Aligned_cols=32 Identities=47% Similarity=0.789 Sum_probs=27.1
Q ss_pred cceeEeeeCCCCCCCCcCCCCCccCC--CceeEEeec
Q 042145 198 QQMALNYCPPCPQPDLTYGLPGHTDP--NLITVLLQD 232 (233)
Q Consensus 198 ~~lrll~YPp~~~~~~~~g~~~HtD~--g~lTlL~qd 232 (233)
+.||+++||| ++...|+++|+|. +++|+|+|+
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~ 35 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQD 35 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEET
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecc
Confidence 4689999999 5667899999999 999999995
No 30
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=77.20 E-value=2.1 Score=38.76 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhc
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFK 98 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~ 98 (233)
..||+||++.+.++ ...++..+.+++.|++.|.|. |+.+......+..++|.+
T Consensus 48 ~~IP~i~f~di~~~---~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 48 SIIPEIDFADIENG---GVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp -SS-EEEHHHHHCT------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCceeeHHHHhCC---CCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 68999999998654 345778888899999999987 788777777777776664
No 31
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=66.54 E-value=9.2 Score=34.05 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=39.2
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhh
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFF 97 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF 97 (233)
..+|.||++.+... ++.+.++.+++.++|+..+.+-.++.+. +.+.++.|-
T Consensus 108 ~~~~~~d~~~~~~~--~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G 158 (366)
T TIGR02409 108 LSLPKFDHEAVMKD--DSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIG 158 (366)
T ss_pred ccCCceeHHHHhCC--HHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhc
Confidence 57899999886642 5778899999999999999998887653 445555543
No 32
>PRK08130 putative aldolase; Validated
Probab=65.99 E-value=12 Score=30.51 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++++... +..+.++++.+++.+...+.+.|||+
T Consensus 127 ~i~v~~y~~~---g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP---GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC---ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 6899987653 34688899999999999999999995
No 33
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=65.97 E-value=5.3 Score=27.36 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.6
Q ss_pred HHHHHHhHhcceEEEeccCCC
Q 042145 62 KQIGQACHHDGFFQVKNHGIP 82 (233)
Q Consensus 62 ~~l~~A~~~~GFf~l~nhgi~ 82 (233)
+.|.+.|.+.||+||+-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 568889999999999877553
No 34
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=62.51 E-value=15 Score=29.30 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=30.3
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
..||++++... +.++.++++.+++.+...+.+.|||+
T Consensus 119 ~~v~v~~~~~~---g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 119 KKIPILPFRPA---GSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CCEeeecCCCC---CcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 37999998753 24688889999999889999999995
No 35
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=54.51 E-value=24 Score=29.02 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++++... ...+.++++.+++.+...+.+.|||+
T Consensus 127 ~v~~~~y~~~---gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAAS---GTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCC---CcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 5788877642 24788999999999999999999995
No 36
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.63 E-value=42 Score=27.86 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=36.8
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEecc-CCChHHHHHHHHHHHH
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNH-GIPETIINNTLSIAGA 95 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nh-gi~~~~~~~~~~~~~~ 95 (233)
.+|-.+.+..|. ..++.+.+.+||.+.|| ++.-. ||+.+....+.+.+.+
T Consensus 150 ~SiKffPM~Gl~---~leE~~avA~aca~~g~-~lEPTGGIdl~Nf~~I~~i~ld 200 (236)
T TIGR03581 150 SSVKFFPMGGLK---HLEEYAAVAKACAKHGF-YLEPTGGIDLDNFEEIVQIALD 200 (236)
T ss_pred CeeeEeecCCcc---cHHHHHHHHHHHHHcCC-ccCCCCCccHHhHHHHHHHHHH
Confidence 345555555553 57899999999999997 67655 5998877777766644
No 37
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=51.31 E-value=27 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=27.8
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++ .... +.++.++++.+++.+.-.+.+.|||+
T Consensus 115 ~ipv~-~~~~---~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDI---GSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCC---CCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58988 3322 34678889999999999999999995
No 38
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=50.11 E-value=31 Score=28.22 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.0
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++.+... +..+.++++.+++.+...+.+.|||+
T Consensus 122 ~v~~~~y~~~---gs~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATF---GTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCC---CCHHHHHHHHHHhCcCCEEEecCCCC
Confidence 5888887653 23677888999998888999999996
No 39
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=50.01 E-value=15 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=29.3
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhH-hcceEEEeccCC
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACH-HDGFFQVKNHGI 81 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~-~~GFf~l~nhgi 81 (233)
..||+++..... .++..+++.+++. +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~---~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPG---SEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTT---CHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeecccccc---chhhhhhhhhhhcCCceEEeecCCce
Confidence 479999987632 2566799999999 889999999995
No 40
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=45.54 E-value=44 Score=24.64 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=34.2
Q ss_pred ceEeCCCCCCccHHHHHHHHHHHhHhcceEEEec-cCCChHHHHHHHHHHHH
Q 042145 45 PLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKN-HGIPETIINNTLSIAGA 95 (233)
Q Consensus 45 PvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~~ 95 (233)
-+||++. .+.+....+.|.+.|.=.|.+ .|.+.+.++.+.+++++
T Consensus 70 VvIDfT~------p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 70 VVIDFTN------PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp EEEEES-------HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred EEEEcCC------hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 4678884 677777888888889999986 58988888888877665
No 41
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=45.14 E-value=36 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
..||++.+... +..+.++++.+++.+...+.+.|||+
T Consensus 123 ~~i~~~~y~~~---gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 123 PNVRCAEYATF---GTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CCeeeccCCCC---ChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 35777766432 34677888899999999999999995
No 42
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=44.46 E-value=18 Score=21.25 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.7
Q ss_pred cCCCceeEEeecC
Q 042145 221 TDPNLITVLLQDD 233 (233)
Q Consensus 221 tD~g~lTlL~qd~ 233 (233)
-.||.+||..||+
T Consensus 13 i~yGsV~iiiqdG 25 (38)
T PF10055_consen 13 IRYGSVTIIIQDG 25 (38)
T ss_pred CCcceEEEEEECC
Confidence 3689999999985
No 43
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=42.07 E-value=50 Score=28.23 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIP 82 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~ 82 (233)
.||++.+... .-.+.++++.+++.+...+.+.|||+-
T Consensus 179 ~i~vvpy~~p---gs~eLa~~v~~~l~~~~avLL~nHGvv 215 (274)
T PRK03634 179 GVGIVPWMVP---GTDEIGQATAEKMQKHDLVLWPKHGVF 215 (274)
T ss_pred ceeEecCCCC---CCHHHHHHHHHHhccCCEEEEcCCCCe
Confidence 5788877643 236788889999998899999999963
No 44
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=41.83 E-value=50 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhH---hcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACH---HDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~---~~GFf~l~nhgi 81 (233)
.||+++.. . ..++.++.+.++++ +...+.+.|||+
T Consensus 126 ~vp~~~~~---~-gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFENT---Q-DIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecCC---C-ChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 58888741 1 34678889999986 478999999996
No 45
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=41.27 E-value=38 Score=27.60 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=27.0
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhH-hcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACH-HDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~-~~GFf~l~nhgi 81 (233)
.||+++.-. ..++.++.+.++++ +...+.+.|||+
T Consensus 137 ~vpv~~~~~----~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENHA----DIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCCC----CHHHHHHHHHHHhccCCcEEEECCCce
Confidence 478886221 24688899999997 888999999995
No 46
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=39.74 E-value=51 Score=27.85 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=33.9
Q ss_pred eEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHH
Q 042145 46 LIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLS 91 (233)
Q Consensus 46 vIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~ 91 (233)
|||++.+.......-...|.+.|+++|++-|--.|...+..+.+..
T Consensus 54 VlDl~~l~~~~~~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 54 ILDFGGLSQVPDLATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred EEEchhhcCccccccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 7899998643212336789999999999999888887766554444
No 47
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=39.61 E-value=33 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHh
Q 042145 158 EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKAL 193 (233)
Q Consensus 158 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~ 193 (233)
..++++|.........-...||..||++...+..+|
T Consensus 13 ~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 13 KVLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccccccccccccccccCH
Confidence 788899998888899999999999999998877765
No 48
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=39.27 E-value=64 Score=27.42 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=39.5
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcC
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKL 99 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~l 99 (233)
++|.=+||+... ..+..++|.+++.++|+..+.|-.++. ++..+.++.|-.+
T Consensus 14 aev~g~dl~~~l---~~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 14 AQISGIDLTRPL---SDNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred eEEeCcccCCcC---CHHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 677778887632 257789999999999999999988875 4556666666543
No 49
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=38.87 E-value=1.1e+02 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=20.5
Q ss_pred CcceeEeeeCCCCCCCCcCCCCCccCCC--------ceeEEee
Q 042145 197 GQQMALNYCPPCPQPDLTYGLPGHTDPN--------LITVLLQ 231 (233)
Q Consensus 197 ~~~lrll~YPp~~~~~~~~g~~~HtD~g--------~lTlL~q 231 (233)
...+++++|.+- -...+|.|.. .+|+++.
T Consensus 82 ~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~y 118 (178)
T smart00702 82 AEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLY 118 (178)
T ss_pred CcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEE
Confidence 345789999863 2367899976 5887763
No 50
>PRK06755 hypothetical protein; Validated
Probab=37.21 E-value=46 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||+|+...- ..++..+.+.++.++...+.|.|||+
T Consensus 136 ~IPiv~~~~~---~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKK---FADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCc---hhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 6999988652 12556666667777888999999995
No 51
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=37.09 E-value=45 Score=29.62 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=37.7
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhh
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFF 97 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF 97 (233)
.+|.+|+..+... .++.+.++.+++.++|+..+.|-+++.+. ..+.+++|-
T Consensus 100 ~~~~~~~~~~~~~-~d~~l~~~l~~l~~~G~v~~~g~~~~~~~---~~~~a~riG 150 (362)
T TIGR02410 100 KDPSVHFKTTYDH-TDSTLKSFSKNIYKYGFTFVDNVPVTPEA---TEKLCERIS 150 (362)
T ss_pred cCCceeHHHHhcc-CHHHHHHHHHHHHhhCEEEEcCCCCCHHH---HHHHHHHhc
Confidence 4688888776542 24678999999999999999998887654 345555543
No 52
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=35.69 E-value=60 Score=26.60 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHh--HhcceEEEeccCCC
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQAC--HHDGFFQVKNHGIP 82 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~--~~~GFf~l~nhgi~ 82 (233)
..||++.+... ..++.++++.+++ .+...+.+.|||+-
T Consensus 129 ~~ip~~~y~~~---g~~ela~~i~~~l~~~~~~~vll~nHG~~ 168 (221)
T PRK06557 129 GPIPVGPFALI---GDEAIGKGIVETLKGGRSPAVLMQNHGVF 168 (221)
T ss_pred CCeeccCCcCC---CcHHHHHHHHHHhCcCCCCEEEECCCCce
Confidence 36888776543 2357788888888 77889999999953
No 53
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=35.21 E-value=69 Score=27.36 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++.+..- .-.+.++++.+++++..-+.+.|||+
T Consensus 177 ~i~vvp~~~p---Gs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVP---GTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCC---CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5788877652 34688899999999999999999995
No 54
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=35.05 E-value=49 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++.+...- -.+.++++.+++.+...+.+.|||+
T Consensus 121 ~i~~v~y~~~g---s~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFG---STKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCC---hHHHHHHHHHHhhhCCEEehhcCCC
Confidence 57777666532 3577888888888889999999995
No 55
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=34.40 E-value=68 Score=19.76 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHhhcCCH
Q 042145 59 DLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPE 101 (233)
Q Consensus 59 ~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~ 101 (233)
+.+..|...+...||......|+-......+...-++.+.|+.
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~~ 45 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLPV 45 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcCC
Confidence 4678889999999999665567666777777777777777763
No 56
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=33.83 E-value=1.1e+02 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=0.0
Q ss_pred eEeCCCCCCccHHHHHHHHHHHhHhcceEEEecc-CCChHHHHHHHHHHHH
Q 042145 46 LIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNH-GIPETIINNTLSIAGA 95 (233)
Q Consensus 46 vIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nh-gi~~~~~~~~~~~~~~ 95 (233)
+|||+. ++...++.+-|.+.|.-.|.+. |.+.+.++.+.++++.
T Consensus 73 ~IDFT~------P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 73 LIDFTT------PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EEECCC------chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
No 57
>PRK06357 hypothetical protein; Provisional
Probab=33.62 E-value=93 Score=25.51 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=26.1
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhc------ceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHD------GFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~------GFf~l~nhgi 81 (233)
.||++.+... ..++.++.+.+++++. ..+.+.|||+
T Consensus 130 ~i~~~p~~~~---gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA---TSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC---CcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 4777776543 2367778888888764 5899999995
No 58
>PRK05834 hypothetical protein; Provisional
Probab=31.97 E-value=73 Score=25.69 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcc--eEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDG--FFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~G--Ff~l~nhgi 81 (233)
.||++....... ..+...+.+.+++.+.. .+.+.|||+
T Consensus 121 ~ipv~~~~~~~~-~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFDD-WYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccch-HHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 478876544321 12244677888888755 999999995
No 59
>PRK06661 hypothetical protein; Provisional
Probab=31.53 E-value=77 Score=26.29 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=27.3
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||..++..... +..+..+++.+++.+...+.+.|||+
T Consensus 123 ~i~~~~~~~~~~-~~~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 123 RISYHNYNSLAL-DADKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred CceecCCCcccc-CchhHHHHHHHHhCCCCEEEECCCCC
Confidence 356555543321 12567888999999999999999995
No 60
>PLN02452 phosphoserine transaminase
Probab=29.10 E-value=1.2e+02 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=32.1
Q ss_pred HHHHHHHHHhHhcceEEEeccC------------CChHHHHHHHHHHHHh
Q 042145 59 DLIKQIGQACHHDGFFQVKNHG------------IPETIINNTLSIAGAF 96 (233)
Q Consensus 59 ~~~~~l~~A~~~~GFf~l~nhg------------i~~~~~~~~~~~~~~f 96 (233)
+..+++.+.+++.||..+.+|+ ++.+.++.+.+..++|
T Consensus 311 ~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 311 ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999984 5677888888888886
No 61
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=27.64 E-value=74 Score=25.72 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 42 GSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 42 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
..||++++..... ..++.++.+.+++.+.-.+.+.|||+
T Consensus 121 ~~ip~~~~~~~~~-~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPET-GEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCCc-cHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 4799998876421 23566677777778888999999995
No 62
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=27.23 E-value=68 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=23.8
Q ss_pred ceEeCCCCCCccHHHHHHHHHHHhHhcceEEEec
Q 042145 45 PLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKN 78 (233)
Q Consensus 45 PvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~n 78 (233)
=+|.|.+ +...+...|.++++.|||-.+.+
T Consensus 59 tt~~l~q----~~d~Fg~aL~~aLr~~GYaVvtd 88 (145)
T PRK13835 59 TTIKLKK----DTSPFGQALEAALKGWGYAVVTD 88 (145)
T ss_pred eEEEEee----cCcHHHHHHHHHHHhcCeEEeec
Confidence 4666655 22589999999999999999973
No 63
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=27.03 E-value=92 Score=26.92 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=21.0
Q ss_pred HHHhHhcceEEEeccCCChHHHHHHHHHHH
Q 042145 65 GQACHHDGFFQVKNHGIPETIINNTLSIAG 94 (233)
Q Consensus 65 ~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~ 94 (233)
.+++++.|||.|+| +|..++.++.+...
T Consensus 18 l~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 18 LRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 46889999999999 66677666665544
No 64
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=25.63 E-value=75 Score=19.40 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhc
Q 042145 158 EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALG 194 (233)
Q Consensus 158 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~ 194 (233)
..++++|....-....-+..|+..+|++..-+..+|.
T Consensus 13 ~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (59)
T cd00086 13 EELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7888888888888889999999999999888777663
No 65
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=25.41 E-value=1.1e+02 Score=19.40 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Q 042145 165 TSVRGLVLKLLEAISESMGLQRDY 188 (233)
Q Consensus 165 ~~~~~l~~~ll~~i~~~Lgl~~~~ 188 (233)
.+-+++...|.+.+++.||+|++.
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~ 38 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKER 38 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhh
Confidence 456788888999999999999755
No 66
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=25.08 E-value=52 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHhHhcceEE
Q 042145 56 RRLDLIKQIGQACHHDGFFQ 75 (233)
Q Consensus 56 ~~~~~~~~l~~A~~~~GFf~ 75 (233)
..++..+++.+++++-||.+
T Consensus 79 ~~~e~l~~I~~~L~~~G~L~ 98 (98)
T PF02829_consen 79 PDEEDLDKIEEALKKKGFLY 98 (98)
T ss_dssp SSHHHHHHHHHHHHHTT-B-
T ss_pred CCHHHHHHHHHHHHHCCCcC
Confidence 45889999999999999975
No 67
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=24.84 E-value=1.3e+02 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHhcc---eEEEeccCC
Q 042145 57 RLDLIKQIGQACHHDG---FFQVKNHGI 81 (233)
Q Consensus 57 ~~~~~~~l~~A~~~~G---Ff~l~nhgi 81 (233)
.++.++.+.+++++.. .+.|.|||+
T Consensus 144 ~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 144 IARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 4788899999998864 899999995
No 68
>PRK07044 aldolase II superfamily protein; Provisional
Probab=24.78 E-value=1.4e+02 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCC
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi 81 (233)
.||++++..+.. ..+..+++.+++.+...+.+.|||+
T Consensus 138 ~i~~~~y~~~~~--~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIAL--DLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcC--CHHHHHHHHHHhccCCEEEECCCCc
Confidence 577777654321 2455788888888889999999995
No 69
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=24.70 E-value=1.8e+02 Score=25.03 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=26.3
Q ss_pred ceEeCCCCCCccHHHHHHHHHHHhHhcceEEEecc-CCChHHHHHH
Q 042145 45 PLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNH-GIPETIINNT 89 (233)
Q Consensus 45 PvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nh-gi~~~~~~~~ 89 (233)
-+|||+. ++.+....+.|...|.-.|.+. |.+.+.++++
T Consensus 72 VvIDFT~------P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l 111 (275)
T TIGR02130 72 ICIDYTH------PSAVNDNAAFYGKHGIPFVMGTTGGDREALAKL 111 (275)
T ss_pred EEEECCC------hHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHH
Confidence 4589986 5666667777777777777764 6666655444
No 70
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=24.57 E-value=2.5e+02 Score=21.12 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHhcceEEEec-cCCChHHHHHHHHHHH
Q 042145 57 RLDLIKQIGQACHHDGFFQVKN-HGIPETIINNTLSIAG 94 (233)
Q Consensus 57 ~~~~~~~l~~A~~~~GFf~l~n-hgi~~~~~~~~~~~~~ 94 (233)
....++++.+.+++..++++.+ +|++...+.++....+
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~ 41 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELR 41 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 4567888888888888777765 4688777666665544
No 71
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.18 E-value=1.4e+02 Score=18.02 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred HHHHHHHHhHhcceEEEeccCCChHHHHHHHHHH
Q 042145 60 LIKQIGQACHHDGFFQVKNHGIPETIINNTLSIA 93 (233)
Q Consensus 60 ~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~ 93 (233)
.++.+.+++++.||. |++++++++++.+
T Consensus 20 ~~~~~l~~l~~~g~~------is~~l~~~~L~~~ 47 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFR------ISPKLIEEILRRA 47 (48)
T ss_pred hHHHHHHHHHHcCcc------cCHHHHHHHHHHc
Confidence 566777888899988 7888888777653
No 72
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=24.04 E-value=1.2e+02 Score=18.81 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Q 042145 165 TSVRGLVLKLLEAISESMGLQRDY 188 (233)
Q Consensus 165 ~~~~~l~~~ll~~i~~~Lgl~~~~ 188 (233)
.+-+++...|.+.+++.+|++++.
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~ 38 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEH 38 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhh
Confidence 456788889999999999998755
No 73
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=23.99 E-value=98 Score=19.40 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHH
Q 042145 165 TSVRGLVLKLLEAISESMGLQRDYI 189 (233)
Q Consensus 165 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 189 (233)
++-.+|+..|.+.+.+.+|++++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 4567888899999999999987653
No 74
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=23.76 E-value=1.7e+02 Score=24.08 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=30.8
Q ss_pred CceEeCCCCCCccHHHHHHHHHHHhHhcceEEEecc-CCChHHHHHHHHHHHH
Q 042145 44 IPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNH-GIPETIINNTLSIAGA 95 (233)
Q Consensus 44 iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nh-gi~~~~~~~~~~~~~~ 95 (233)
|-...+..+ ...++.+.+.+||.+.||-. .-. ||+.+-...+.+.+.+
T Consensus 152 iKffPm~Gl---~~leE~~avAkA~a~~g~~l-EPTGGIdl~N~~~I~~i~l~ 200 (218)
T PF07071_consen 152 IKFFPMGGL---KHLEELKAVAKACARNGFTL-EPTGGIDLDNFEEIVKICLD 200 (218)
T ss_dssp EEE---TTT---TTHHHHHHHHHHHHHCT-EE-EEBSS--TTTHHHHHHHHHH
T ss_pred eeEeecCCc---ccHHHHHHHHHHHHHcCcee-CCcCCcCHHHHHHHHHHHHH
Confidence 444444444 46889999999999999987 655 5998877777766543
No 75
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=23.13 E-value=1.3e+02 Score=18.79 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Q 042145 165 TSVRGLVLKLLEAISESMGLQRDY 188 (233)
Q Consensus 165 ~~~~~l~~~ll~~i~~~Lgl~~~~ 188 (233)
.+-.+++..|..++.+.||.+++.
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~ 37 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCe
Confidence 456788889999999999998754
No 76
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=22.82 E-value=1.4e+02 Score=19.15 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHhcc--eEEEec------cCCChHHHHHHHHHHH
Q 042145 58 LDLIKQIGQACHHDG--FFQVKN------HGIPETIINNTLSIAG 94 (233)
Q Consensus 58 ~~~~~~l~~A~~~~G--Ff~l~n------hgi~~~~~~~~~~~~~ 94 (233)
.+.+++|.+.++++| .+.++. +||+.+.+..+++..+
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 567788888888777 666654 4677777777776554
No 77
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=22.76 E-value=1.5e+02 Score=24.12 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHhcceEEEeccCCChHHHHHHHHHHHHh
Q 042145 58 LDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAF 96 (233)
Q Consensus 58 ~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~f 96 (233)
+..+++|.+++.+.||+.|.+-.++.+.. .+.++.|
T Consensus 23 ~~~~~~~~~~l~~~G~vvlrg~~~~~~~~---~~~~~~~ 58 (258)
T PF02668_consen 23 DEELEELREALAEYGFVVLRGFPLDPEQF---EALASRL 58 (258)
T ss_dssp HCHHHHHHHHHHHHSEEEEESCTSSHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHhcccEEEEcCCCCCHHHH---HHHHHhh
Confidence 35899999999999999999888755533 4455554
No 78
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=22.68 E-value=1.5e+02 Score=20.02 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhHhcceEEEeccCCChHHHHHHH
Q 042145 58 LDLIKQIGQACHHDGFFQVKNHGIPETIINNTL 90 (233)
Q Consensus 58 ~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~ 90 (233)
.+.++.|.++++.+||..=.-||.-.+...+++
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al 47 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDAL 47 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHH
Confidence 688999999999999977777776555444433
No 79
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=22.59 E-value=1.6e+02 Score=24.72 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCc-eEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHHH
Q 042145 43 SIP-LIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIIN 87 (233)
Q Consensus 43 ~iP-vIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~ 87 (233)
..| |||++.+.... .....+|.+.|++.|+.-+--.|-..+...
T Consensus 46 ~aPvVldl~~l~~~~-~~dl~~L~~~l~~~gl~~vGv~g~~~~~~~ 90 (235)
T PRK04516 46 VVPFVLDVQEFDYPE-SLDLAALVSLFSRHGMQILGLKHSNERWAA 90 (235)
T ss_pred CCcEEEEchhhCCcc-cccHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 445 88999986432 234778999999999999987776655443
No 80
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=22.57 E-value=2e+02 Score=19.86 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHh
Q 042145 158 EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKAL 193 (233)
Q Consensus 158 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~ 193 (233)
..+.+ |..++.++..|+..||..-|+.-..+-+.+
T Consensus 43 ~lLhe-YNeiKD~gQ~Lig~iA~~rgvt~~~v~~e~ 77 (83)
T PF07061_consen 43 KLLHE-YNEIKDIGQGLIGLIADQRGVTVKDVYEEF 77 (83)
T ss_pred HHHHH-HhHHHHHHHHHHHHHHHHcCCcHHHHHHHc
Confidence 33443 578999999999999999999876655443
No 81
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=21.47 E-value=1.5e+02 Score=24.74 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChH
Q 042145 43 SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPET 84 (233)
Q Consensus 43 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~ 84 (233)
.+|.+++..+... +....++.+++.++|+..+.+-....+
T Consensus 18 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~g~~~~~~~~~~~~ 57 (262)
T cd00250 18 ALPVLSFLEVLEL--DSPLGKLLLASAGVGFAELEGAPLDPA 57 (262)
T ss_pred CCCcccHHHHhcC--HHHHHHHHHHHHHhcEEEEeCCCCCHH
Confidence 5688888776543 567889999999999999998776644
No 82
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=21.22 E-value=93 Score=19.07 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhH
Q 042145 164 CTSVRGLVLKLLEAISESMGLQRDY 188 (233)
Q Consensus 164 ~~~~~~l~~~ll~~i~~~Lgl~~~~ 188 (233)
-++-++++..|.+.+++.+|.+++.
T Consensus 13 ~eqk~~l~~~i~~~l~~~~g~~~~~ 37 (58)
T cd00491 13 DEQKRELIERVTEAVSEILGAPEAT 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3566788899999999999998643
No 83
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=20.71 E-value=2.3e+02 Score=23.90 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=29.8
Q ss_pred CCc-eEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCChHHH
Q 042145 43 SIP-LIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETII 86 (233)
Q Consensus 43 ~iP-vIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~ 86 (233)
..| +||++.+..........+|.+.|+++|+..+--.+...+..
T Consensus 52 ~~pvvld~~~~~~~~~~~dl~~L~~~l~~~gl~~vgv~~~~~~~~ 96 (249)
T PRK00339 52 NTPLVLALDKLPEGEGELDLPGLMRICRRHGLRTLAIRASRIEDI 96 (249)
T ss_pred CCeEEEEecccccccchHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 344 58999875332234578899999999988776555554433
No 84
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.60 E-value=1.4e+02 Score=18.68 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Q 042145 165 TSVRGLVLKLLEAISESMGLQRDY 188 (233)
Q Consensus 165 ~~~~~l~~~ll~~i~~~Lgl~~~~ 188 (233)
++-.++...|.+.++..||.+++.
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~ 38 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLES 38 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 456688888999999999998754
No 85
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.49 E-value=91 Score=19.68 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Q 042145 165 TSVRGLVLKLLEAISESMGLQRDY 188 (233)
Q Consensus 165 ~~~~~l~~~ll~~i~~~Lgl~~~~ 188 (233)
++-++|+..|.+++++.+|.|++.
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~ 38 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEA 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcce
Confidence 456788999999999999998654
Done!