BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042146
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 191/316 (60%), Gaps = 68/316 (21%)
Query: 5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
R E +P Y L TL GH +AVS VKFS +G L +SSA+K + + F+ T
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKT-- 63
Query: 64 SPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108
+GH+ GISD+A T+++WDV + LKTL GH+NYVFC NF
Sbjct: 64 -----ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
NPQSN IVS +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 169 LDAS---------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
D + +PNGK+IL TLDNTL+LW+YS K LKTY+G+ N
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
KYCI + FSVT GK+IVS H D VIS A HP +NIIA
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 245 SGALDNDRTMKIWTQE 260
S AL+ND+T+K+W +
Sbjct: 299 SAALENDKTIKLWKSD 314
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 88
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 148
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 268
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 328
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 329 IKLWKSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 327 IKLWKSD 333
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 70
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 311 IKLWKSD 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 69
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 249
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 309
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 310 IKLWKSD 316
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 81
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 261
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 321
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 322 IKLWKSD 328
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 64
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 305 IKLWKSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 60
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 300
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 301 IKLWKSD 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 64
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 305 IKLWKSD 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 70
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 311 IKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 65
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 245
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 305
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 306 IKLWKSD 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 63
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 243
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 303
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 304 IKLWKSD 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 70
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 311 IKLWKSD 317
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 191/316 (60%), Gaps = 68/316 (21%)
Query: 5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
R E +P Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-- 63
Query: 64 SPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108
+GH+ GISD+A T+++WDV + LKTL GH+NYVFC NF
Sbjct: 64 -----ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
NPQSN IVS +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 169 LDAS---------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
D + +PNGK+IL TLDNTL+LW+YS K LKTY+G+ N
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
KYCI + FSVT GK+IVS H D VIS A HP +NIIA
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 245 SGALDNDRTMKIWTQE 260
S AL+ND+T+K++ +
Sbjct: 299 SAALENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 191/316 (60%), Gaps = 68/316 (21%)
Query: 5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
R E +P Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-- 63
Query: 64 SPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108
+GH+ GISD+A T+++WDV + LKTL GH+NYVFC NF
Sbjct: 64 -----ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
NPQSN IVS +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 169 LDAS---------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
D + +PNGK+IL TLDNTL+LW+YS K LKTY+G+ N
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
KYCI + FSVT GK+IVS H D VIS A HP +NIIA
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 245 SGALDNDRTMKIWTQE 260
S AL+ND+T+K++ +
Sbjct: 299 SAALENDKTIKLFKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 186/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 67
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTG CLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDNTL+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 308 IKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 270 bits (691), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 185/307 (60%), Gaps = 67/307 (21%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
Y L TL GH +AVS VKFS +G L SSSA+K + + F+ T +GH
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 67
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ GISD+A T+++WDV + LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
+F+E++RIWD+KTG CLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
+PNGK+IL TLDN L+LW+YS K LKTY+G+ N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
SVT GK+IVS H D VIS A HP +NIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 254 MKIWTQE 260
+K+W +
Sbjct: 308 IKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 149/315 (47%), Gaps = 68/315 (21%)
Query: 2 SSDRSLESF-RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
S D++++ + R L QTL GH +V V FS DG+ + S+S +KT+ ++ +
Sbjct: 76 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------ 129
Query: 61 TPPSPLQKFTGHEQGI---------------SDLATIRLWDVPTATSLKTLIGHTNYVFC 105
LQ TGH + SD T++LW+ L+TL GH++ V+
Sbjct: 130 ---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 185
Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
+ F+P I S + ++T+++W+ + G+ L+ L HS V + F+ DG I ++S D
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 166 YRILD-------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206
++ + A P+G+ I + D T++LWN + ++L+T +G++
Sbjct: 245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHS 303
Query: 207 NSKYCIS-----STFSVT-----------NGKY---IVSHRDPVISVASHPAKNIIASGA 247
+S + ++ T + NG++ + H V VA P IAS +
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 248 LDNDRTMKIWTQEKE 262
+D+T+K+W + +
Sbjct: 364 --DDKTVKLWNRNGQ 376
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 148/315 (46%), Gaps = 68/315 (21%)
Query: 2 SSDRSLESF-RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
S D++++ + R L QTL GH +V V FS DG+ + S+S +KT+ ++ +
Sbjct: 35 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG------ 88
Query: 61 TPPSPLQKFTGHEQGI---------------SDLATIRLWDVPTATSLKTLIGHTNYVFC 105
LQ TGH + SD T++LW+ L+TL GH++ V+
Sbjct: 89 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 144
Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
+ F+P I S + ++T+++W+ + G+ L+ L HS V + F+ DG I ++S D
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 203
Query: 166 YRILD-------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206
++ + A +P+G+ I + D T++LWN + ++L+T +G++
Sbjct: 204 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHS 262
Query: 207 NSKYCIS------STFSVTNGKYI-------------VSHRDPVISVASHPAKNIIASGA 247
+S ++ + S ++ K + H V VA P IAS +
Sbjct: 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322
Query: 248 LDNDRTMKIWTQEKE 262
+D+T+K+W + +
Sbjct: 323 --DDKTVKLWNRNGQ 335
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 73/300 (24%)
Query: 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-- 76
L H +V V FS DG+ + S+S +KT+ ++ + LQ TGH +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQTLTGHSSSVWG 62
Query: 77 -------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET 123
SD T++LW+ L+TL GH++ V + F+P I S + ++T
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD------------- 170
+++W+ + G+ L+ L HS V + F+ DG I ++S D ++ +
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 180
Query: 171 ------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
A +P+G+ I + D T++LWN + ++L+T +G+++S ++ FS +G+ I
Sbjct: 181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVA--FS-PDGQTI 236
Query: 225 VS----------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE 262
S H V VA P IAS + +D+T+K+W + +
Sbjct: 237 ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS--DDKTVKLWNRNGQ 294
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 46/226 (20%)
Query: 2 SSDRSLESF-RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
S D++++ + R L QTL GH +V V FS DG+ + S+S +KT+ ++ +
Sbjct: 363 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------ 416
Query: 61 TPPSPLQKFTGHEQGI---------------SDLATIRLWDVPTATSLKTLIGHTNYVFC 105
LQ TGH + SD T++LW+ L+TL GH++ V
Sbjct: 417 ---QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG 472
Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
+ F+P I S + ++T+++W+ + G+ L+ L HS V + F+ DG I ++S D
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 166 YRILD-------------------ASTPNGKFILVGTLDNTLRLWN 192
++ + A +P+G+ I + D T++LWN
Sbjct: 532 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 61/285 (21%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74
+TL GH +V + F H G+LL S SA+ +T L F+ ++ GH+
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFEC-----IRTMHGHDH 193
Query: 75 GISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
+S ++ TI++W+V T +KT GH +V + N I S +
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253
Query: 120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN---- 175
++T+R+W + T +C L H V I + + SSY + + T
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPE------SSYSSISEATGSETKKSGKP 307
Query: 176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS--------- 226
G F+L G+ D T+++W+ ST L T G+ N + + GK+I+S
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLFHSGGKFILSCADDKTLRV 364
Query: 227 --------------HRDPVISVASHPAKNIIASGALDNDRTMKIW 257
H V S+ H + +G++ D+T+K+W
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV--DQTVKVW 407
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 31/200 (15%)
Query: 2 SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS----- 54
S D++++ + T +T GH V V+ + DG L+ S S ++T+ + +++
Sbjct: 211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 55 -----------ISNFDSTPPSPLQKFTGHE------------QGISDLATIRLWDVPTAT 91
IS + S + + TG E G D TI++WDV T
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVSTGM 329
Query: 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
L TL+GH N+V + F+ I+S ++T+R+WD K +C+K L AH VT++DF+
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Query: 152 RDGTMIVTSSYDGLYRILDA 171
+ +VT S D ++ +
Sbjct: 390 KTAPYVVTGSVDQTVKVWEC 409
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT 146
+P L GH + V + F+P + +VS + + TI++WD +TG + L H+D V
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 154
Query: 147 AIDFNRDGTMIVTSSYDGLYRILD--------------------ASTPNGKFILVGTLDN 186
I F+ G ++ + S D ++ D + PNG I+ + D
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 187 TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246
T+++W T +KT++G HR+ V V + +IAS
Sbjct: 215 TIKMWEVQTGYCVKTFTG----------------------HREWVRMVRPNQDGTLIASC 252
Query: 247 ALDNDRTMKIW 257
+ ND+T+++W
Sbjct: 253 S--NDQTVRVW 261
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 34/54 (62%)
Query: 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK 130
+D T+R+WD +KTL H ++V ++F+ + +V+ + ++T+++W+ +
Sbjct: 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 72/273 (26%)
Query: 17 QTLNGHL-RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75
+ L GH ++ ++F G + S S + TL +S + L+ GH G
Sbjct: 112 KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWS--------AVTGKCLRTLVGHTGG 161
Query: 76 I-------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE 122
+ S T+++W+ T + TL GHT+ V C++ + + R+VS + +
Sbjct: 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDA 219
Query: 123 TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP-------- 174
T+R+WDI+TG+CL VL H V + + DG +V+ +YD + ++ D T
Sbjct: 220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277
Query: 175 ----------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
+G ++ G+LD ++R+W+ T + T +G+ S+T+G +
Sbjct: 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ----------SLTSGMEL 327
Query: 225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
NI+ SG + D T+KIW
Sbjct: 328 --------------KDNILVSG--NADSTVKIW 344
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 31/228 (13%)
Query: 2 SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD 59
S D +L+ + T +TL GH V + + ++ S S ++TL ++ +
Sbjct: 136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIH 193
Query: 60 ST--PPSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
+ S ++ HE+ + S AT+R+WD+ T L L+GH V C+ ++ + R
Sbjct: 194 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--R 251
Query: 115 IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP 174
+VS ++ +++WD +T CL L H++ V ++ F DG +V+ S D R+ D T
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG 309
Query: 175 N------------------GKFILVGTLDNTLRLWNYSTRKILKTYSG 204
N ++ G D+T+++W+ T + L+T G
Sbjct: 310 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76
L GH+ AV V++ DGR + S + + + +D + L GH +
Sbjct: 233 HVLMGHVAAVRCVQY--DGRRVVSGAYD--------FMVKVWDPETETCLHTLQGHTNRV 282
Query: 77 SDLA-------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET 123
L +IR+WDV T + TL GH + + + N +VS + T
Sbjct: 283 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST 340
Query: 124 IRIWDIKTGKCLKVLPA---HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFI 179
++IWDIKTG+CL+ L H VT + FN++ ++TSS DG ++ D T G+FI
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKT--GEFI 395
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 50/235 (21%)
Query: 2 SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD 59
S+DR+L+ + T TL GH V + H+ R++ S S + TL + + +
Sbjct: 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHL-HEKRVV-SGSRDATLRVWDIET----- 228
Query: 60 STPPSPLQKFTGHEQGISDLA-------------TIRLWDVPTATSLKTLIGHTNYVFCI 106
L GH + + +++WD T T L TL GHTN V+ +
Sbjct: 229 ---GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166
F+ +VS + + +IR+WD++TG C+ L H + ++ + ++V+ + D
Sbjct: 286 QFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTV 341
Query: 167 RILDASTP---------------------NGKFILVGTLDNTLRLWNYSTRKILK 200
+I D T N F++ + D T++LW+ T + ++
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 28/141 (19%)
Query: 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
T TL GH V ++F DG + S S + +SI +D + + TGH+
Sbjct: 270 TCLHTLQGHTNRVYSLQF--DGIHVVSGSLD--------TSIRVWDVETGNCIHTLTGHQ 319
Query: 74 QGISDL-------------ATIRLWDVPTATSLKTLIG---HTNYVFCINFNPQSNRIVS 117
S + +T+++WD+ T L+TL G H + V C+ FN N +++
Sbjct: 320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVIT 377
Query: 118 DTFNETIRIWDIKTGKCLKVL 138
+ + T+++WD+KTG+ ++ L
Sbjct: 378 SSDDGTVKLWDLKTGEFIRNL 398
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 26/85 (30%)
Query: 176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA 235
G I+ G+ DNTL++W+ T K L+T G+T + +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW------------------------S 164
Query: 236 SHPAKNIIASGALDNDRTMKIWTQE 260
S NII SG+ DRT+K+W E
Sbjct: 165 SQMRDNIIISGS--TDRTLKVWNAE 187
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 123/296 (41%), Gaps = 75/296 (25%)
Query: 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS------------------NFDSTPP 63
H V VKFS+DG L ++ KT Y +S S N S+P
Sbjct: 63 HTSVVCCVKFSNDGEYL-ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 64 S----------PLQKF--TGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ 111
S P KF TG E + IR+WD+ + L GH ++ +++ P
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRL-----IRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171
+++VS + + T+RIWD++TG+C L T DG I S D R+ D+
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 172 STP---------------------------NGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
T +G+ ++ G+LD +++LWN L+ +
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN------LQNANN 290
Query: 205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260
++SK S T VT + H+D V+SVA+ I SG+ DR + W ++
Sbjct: 291 KSDSKTPNSGTCEVT----YIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKK 340
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 41/174 (23%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-FDSTPPSPLQKFTGHEQGISDL 79
GH +V V F+ DG+ + S S ++++ ++L + +N DS P+
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--------------- 298
Query: 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP 139
+ T T IGH ++V + I+S + + + WD K+G L +L
Sbjct: 299 ---------SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Query: 140 AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNY 193
H + V ++ ++ P G+ D R+W Y
Sbjct: 350 GHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKY 387
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSP 65
+ S L TL GH V+ + S LL S+S +KTL+++ L+ D P
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVP 57
Query: 66 LQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
++ F GH + D T+RLWDV T + + +GH + V ++ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDG 164
+++ I+S + ++TI++W IK G+CL L H+D V+ + + D I+++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 165 LYRILD--------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
+ + + ++P+G I D + LWN + +K + T S
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 52/170 (30%)
Query: 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIW-----DIKTGKCLKVLPAHSDPVTAI 148
TL GH +V + + Q N ++S + ++T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV--- 68
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+D T+ T +G + L + D TLRLW+ +T G T
Sbjct: 69 ---QDCTL----------------TADGAYALSASWDKTLRLWDVAT--------GETYQ 101
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
++ V H+ V+SV ++I SG+ D+T+K+WT
Sbjct: 102 RF--------------VGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 28/138 (20%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
++ W++ IGH + + + +P I S + I +W++ K + L A
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 142 SDPVTAIDF--NR------DGTMIVTSSYDGLYRILD-------------------ASTP 174
D V ++ F NR T I S D Y + D A +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 175 NGKFILVGTLDNTLRLWN 192
+G+ + G DN +R+W
Sbjct: 297 DGQTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSP 65
+ S L TL GH V+ + S LL S+S +KTL+++ L+ D P
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVP 57
Query: 66 LQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
++ F GH + D T+RLWDV T + + +GH + V ++ +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDG 164
+++ I+S + ++TI++W IK G+CL L H+D V+ + + D I+++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 165 LYRILD--------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
+ + + ++P+G I D + LWN + +K + T S
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 52/170 (30%)
Query: 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIW-----DIKTGKCLKVLPAHSDPVTAI 148
TL GH +V + + Q N ++S + ++T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV--- 68
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+D T+ T +G + L + D TLRLW+ +T G T
Sbjct: 69 ---QDCTL----------------TADGAYALSASWDKTLRLWDVAT--------GETYQ 101
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
++ V H+ V+SV ++I SG+ D+T+K+WT
Sbjct: 102 RF--------------VGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
++ W++ IGH + + + +P I S + I +W++ K + L A
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 142 SDPVTAIDF--NR------DGTMIVTSSYDGLYRILD-------------------ASTP 174
D V ++ F NR T I S D Y + D A +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 175 NGKFILVGTLDNTLRLWNYST 195
+G+ + G DN +R+W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMT 317
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
L TL GH V+ + S LL S+S +KTL+++ L+ D P++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 65
Query: 74 QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
+ D T+RLWDV T + + +GH + V ++ + +++ I+S
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
+ ++TI++W IK G+CL L H+D V+ + + D I+++ D + + +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
++P+G I D + LWN + +K + T S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 52/170 (30%)
Query: 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIW-----DIKTGKCLKVLPAHSDPVTAI 148
TL GH +V + + Q N ++S + ++T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV--- 68
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+D T+ T +G + L + D TLRLW+ +T G T
Sbjct: 69 ---QDCTL----------------TADGAYALSASWDKTLRLWDVAT--------GETYQ 101
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
++ V H+ V+SV ++I SG+ D+T+K+WT
Sbjct: 102 RF--------------VGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
++ W++ IGH + + + +P I S + I +W++ K + L A
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 142 SDPVTAIDF--NR------DGTMIVTSSYDGLYRILD-------------------ASTP 174
D V ++ F NR T I S D Y + D A +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 175 NGKFILVGTLDNTLRLWNYST 195
+G+ + G DN +R+W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMT 317
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
L TL GH V+ + S LL S+S +KTL+++ L+ D P++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 65
Query: 74 QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
+ D T+RLWDV T + + +GH + V ++ + +++ I+S
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
+ ++TI++W IK G+CL L H+D V+ + + D I+++ D + + +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
++P+G I D + LWN + +K + T S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 52/170 (30%)
Query: 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIW-----DIKTGKCLKVLPAHSDPVTAI 148
TL GH +V + + Q N ++S + ++T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV--- 68
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+D T+ T +G + L + D TLRLW+ +T G T
Sbjct: 69 ---QDCTL----------------TADGAYALSASWDKTLRLWDVAT--------GETYQ 101
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
++ V H+ V+SV ++I SG+ D+T+K+WT
Sbjct: 102 RF--------------VGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
++ W++ IGH + + + +P I S + I +W++ K + L A
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 142 SDPVTAIDF--NR------DGTMIVTSSYDGLYRILD-------------------ASTP 174
D V ++ F NR T I S D Y + D A +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSA 296
Query: 175 NGKFILVGTLDNTLRLWNYST 195
+G+ + G DN +R+W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVMT 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
L TL GH V+ + S LL S+S +KTL+++ L+ D P++ F GH
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 59
Query: 74 QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
+ D T+RLWDV T + + +GH + V ++ + +++ I+S
Sbjct: 60 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
+ ++TI++W IK G+CL L H+D V+ + + D I+++ D + + +
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
++P+G I D + LWN + +K + T S
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 52/170 (30%)
Query: 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIW-----DIKTGKCLKVLPAHSDPVTAI 148
TL GH +V + + Q N ++S + ++T+ W D K G ++ HS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV--- 62
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+D T+ T +G + L + D TLRLW+ +T G T
Sbjct: 63 ---QDCTL----------------TADGAYALSASWDKTLRLWDVAT--------GETYQ 95
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
++ V H+ V+SV ++I SG+ D+T+K+WT
Sbjct: 96 RF--------------VGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 129
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
++ W++ IGH + + + +P I S + I +W++ K + L A
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 142 SDPVTAIDF--NR------DGTMIVTSSYDGLYRILD-------------------ASTP 174
D V ++ F NR T I S D Y + D A +
Sbjct: 232 -DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 290
Query: 175 NGKFILVGTLDNTLRLWNYST 195
+G+ + G DN +R+W T
Sbjct: 291 DGQTLFAGYTDNVIRVWQVMT 311
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 36/198 (18%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL---QKFTG 71
+ TL H AV +++F+ +G ++T S SI+ +D P+ + + G
Sbjct: 205 MLNTLIHHCEAVLHLRFN-NGMMVTCSKDR---------SIAVWDMASPTDITLRRVLVG 254
Query: 72 HEQGI-------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
H + S TI++W+ T ++TL GH + C+ + + +VS
Sbjct: 255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 312
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI------LDAS 172
+ + TIR+WDI+ G CL+VL H + V I F D IV+ +YDG ++ LD
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 173 TPNGKFILVGTLDNTLRL 190
P G L ++++ R+
Sbjct: 371 APAGTLCLRTLVEHSGRV 388
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
TI++WD T + L GHT V C+ ++ + I++ + + T+R+WD+ TG+ L L
Sbjct: 154 TIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIH 211
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP---------------------NGKFI 179
H + V + FN M+VT S D + D ++P + K+I
Sbjct: 212 HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI 269
Query: 180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213
+ + D T+++WN ST + ++T +G+ C+
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 303
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 26/159 (16%)
Query: 75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
G SD +T+R+WDV T L TLI H V + FN + +V+ + + +I +WD+ +
Sbjct: 189 GSSD-STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245
Query: 135 L---KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP------NG--------- 176
+ +VL H V +DF D IV++S D ++ + ST NG
Sbjct: 246 ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 303
Query: 177 ---KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212
+ ++ G+ DNT+RLW+ L+ G+ CI
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY 162
V+C+ ++ Q +IVS + TI+IWD T +C ++L H+ V + + D +I+T S
Sbjct: 136 VYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS 191
Query: 163 DGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222
D R+ D +T L+ + L L ++ ++ + + + ++S +T +
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHL-RFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
+V HR ++V K I+++ DRT+K+W
Sbjct: 251 VLVGHR-AAVNVVDFDDKYIVSASG---DRTIKVW 281
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 36/165 (21%)
Query: 2 SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD 59
S DR+++ + T +TLNGH R ++ +++ RL+ S S++ T I +D
Sbjct: 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT--------IRLWD 322
Query: 60 STPPSPLQKFTGHEQGISDL-------------ATIRLWDV--------PTAT-SLKTLI 97
+ L+ GHE+ + + I++WD+ P T L+TL+
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Query: 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142
H+ VF + F+ +IVS + ++TI IWD + P S
Sbjct: 383 EHSGRVFRLQFD--EFQIVSSSHDDTILIWDFLNDPAAQAEPPRS 425
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 46/232 (19%)
Query: 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
L TL GH V+ + S LL S+S +KTL+++ L+ D P++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 65
Query: 74 QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
+ D T+RLWDV T + + +GH + V ++ + +++ I+S
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
+ ++TI++W IK G+CL L H+D V+ + + D I+++ D + +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
++P+G I D + LWN + +K T S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 52/170 (30%)
Query: 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIW-----DIKTGKCLKVLPAHSDPVTAI 148
TL GH +V + + Q N ++S + ++T+ W D K G ++ HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV--- 68
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+D T+ T +G + L + D TLRLW+ +T + + + G
Sbjct: 69 ---QDCTL----------------TADGAYALSASWDKTLRLWDVATGETYQRFVG---- 105
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
H+ V SV + I SG+ D+T+K+WT
Sbjct: 106 ------------------HKSDVXSVDIDKKASXIISGS--RDKTIKVWT 135
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
++ W++ IGH + + + +P I S + I +W++ K L A
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 142 SDPVTAIDF--NR------DGTMIVTSSYDGLYRILD-------------------ASTP 174
D V ++ F NR T I S D Y + D A +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 175 NGKFILVGTLDNTLRLWNYST 195
+G+ + G DN +R+W T
Sbjct: 297 DGQTLFAGYTDNVIRVWQVXT 317
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 39/199 (19%)
Query: 2 SSDRSLESFRP----------YTL-TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTY 50
S D++L S+ P Y L + L GH VS V S++G S+S + +L +
Sbjct: 35 SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW 94
Query: 51 SLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKT 95
+L + KF GH + + +A +R+W+V + T
Sbjct: 95 NLQN--------GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHT 145
Query: 96 LI--GHTNYVFCINFNPQSNR--IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
L HT++V C+ F+P + IVS ++ +++WD+ TG+ + L H++ VT++ +
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS 205
Query: 152 RDGTMIVTSSYDGLYRILD 170
DG++ +S DG+ R+ D
Sbjct: 206 PDGSLCASSDKDGVARLWD 224
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+ L GH+ +V + + N VS +++ ++R+W+++ G+C H+ V ++ F+ D
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 154 GTMIVTSSYDGLYRILDASTP-----------------------NGKFILVGTLDNTLRL 190
IV+ D R+ + + I+ G DN +++
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 191 WNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231
W+ +T +++ G+TN Y S T S S +D V
Sbjct: 181 WDLATGRLVTDLKGHTN--YVTSVTVSPDGSLCASSDKDGV 219
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 51/217 (23%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS----------------SISNFDSTPPS 64
GH + V V FS D R + S + L +++ S F + +
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
P+ G + +++WD+ T + L GHTNYV + +P + S +
Sbjct: 167 PVIVSGGWDN------LVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD-------------- 170
R+WD+ G+ L + A + P+ I F+ + + ++ G+ RI D
Sbjct: 221 RLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEH 278
Query: 171 -------------ASTPNGKFILVGTLDNTLRLWNYS 194
A + +G + G DN +R+W S
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 14 TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
TL TL GH V+ + + ++ S+S +KT++ + L+ P L+ GH
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR---GH 62
Query: 73 EQGISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+SD+ T+RLWD+ T T+ + +GHT V + F+ + +IVS
Sbjct: 63 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 118 DTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDF--NRDGTMIVTSSYDGLYRILDAS- 172
+ ++TI++W+ G C + +HS+ V+ + F N +IV+ +D L ++ + +
Sbjct: 123 GSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 173 -------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
+P+G G D LW+ + K L T G
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 95 TLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKT-----GKCLKVLPAHSDPVTAI 148
TL GH +V I PQ + I+S + ++TI +W + G + L HS V+ +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+ DG +F L G+ D TLRLW+ +T + + G+T
Sbjct: 70 VISSDG----------------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHT-- 105
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISV 234
K +S FS N + + RD I +
Sbjct: 106 KDVLSVAFSSDNRQIVSGSRDKTIKL 131
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 14 TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
TL TL GH V+ + + ++ S+S +KT++ + L+ P L+ GH
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR---GH 85
Query: 73 EQGISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+SD+ T+RLWD+ T T+ + +GHT V + F+ + +IVS
Sbjct: 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 118 DTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDF--NRDGTMIVTSSYDGLYRILDAS- 172
+ ++TI++W+ G C + +HS+ V+ + F N +IV+ +D L ++ + +
Sbjct: 146 GSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 173 -------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
+P+G G D LW+ + K L T G
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 95 TLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDI-----KTGKCLKVLPAHSDPVTAI 148
TL GH +V I PQ + I+S + ++TI +W + G + L HS V+ +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+ DG +F L G+ D TLRLW+ +T + + G+T
Sbjct: 93 VISSDG----------------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHT-- 128
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISV 234
K +S FS N + + RD I +
Sbjct: 129 KDVLSVAFSSDNRQIVSGSRDKTIKL 154
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 57/228 (25%)
Query: 19 LNGHLRAVSYV------KFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
L GH V+ + K + D +L S S +KT++ + L + P + TGH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-NGYFGIPHKALTGH 75
Query: 73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+SDLA T+RLWD+ T T+ K +GH + V+ + F+P + +I+S
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 118 DTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFN---RDGTMI-------VTSSYD 163
I++W+I G+C K A HSD V+ + ++ + + + +D
Sbjct: 136 AGAEREIKLWNI-LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 164 GLYRILDAS-------------------TPNGKFILVGTLDNTLRLWN 192
G ++ + + +PNGK+I G D L +W+
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 61/176 (34%)
Query: 96 LIGHTNYV------FCINFNPQSNRIVSDTFNETIRIWDIKT-------GKCLKVLPAHS 142
L GH+++V F N S ++S + ++T+ IW + G K L H+
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTY 202
V+ + +++ ++SS+D TLRLW+ L+T
Sbjct: 77 HFVSDLALSQENCFAISSSWD----------------------KTLRLWD------LRTG 108
Query: 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP-AKNIIASGALDNDRTMKIW 257
+ Y K V H+ V SVA P + I+++GA +R +K+W
Sbjct: 109 TTY----------------KRFVGHQSEVYSVAFSPDNRQILSAGA---EREIKLW 145
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP--- 63
L R T + GH V V FS D R + S+ AE+ + +++ F S
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 64 ---------SPL-------QKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCIN 107
SP+ Q F + + +++W+ T H + V ++
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLS 220
Query: 108 FNPQSNRIVSDTFNETIRIWDI 129
+P I + ++ + IWDI
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDI 242
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 11/177 (6%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK----FT 70
L +L GH V V SH + SSS + + + L + S P+ F+
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 71 GHEQGIS---DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127
Q ++ + + ++ V + +L ++ I ++P + S + I I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 128 DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTL 184
DI TGK L L H+ P+ ++ F+ D ++VT+S DG +I D N L GTL
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN----LAGTL 244
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 29 VKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI------------ 76
+ +S DG+ L S + + I+ FD L GH I
Sbjct: 170 IAYSPDGKYLASGAIDGI--------INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 77 ---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK 133
SD I+++DV A TL GH ++V + F P VS + ++++++WD+ T
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171
C+ H D V + +N +G+ IV+ D I D
Sbjct: 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 44/175 (25%)
Query: 76 ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135
+ DL + W +L GH V ++ + S + + IR+WD++ GK +
Sbjct: 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI 115
Query: 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYST 195
K + A PV A A +P+ +++ GT + ++ +
Sbjct: 116 KSIDA--GPVDAWTL--------------------AFSPDSQYLATGTHVGKVNIFGVES 153
Query: 196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN 250
K K YS T K+ +S +S +GKY+ ASGA+D
Sbjct: 154 GK--KEYSLDTRGKFILSIAYS-PDGKYL-------------------ASGAIDG 186
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI----- 76
H AV + FS DG+ + S A+KTL F + L HE +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQV--------FKAETGEKLLDIKAHEDEVLCCAF 672
Query: 77 ----SDLAT------IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET--I 124
S +AT +++WD T + T H+ V C +F +SN ++ T + +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGK 177
++WD+ +C + H++ V F+ D ++ + S DG R+ D + N +
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
HT+ V+ F+ RI S ++T++++ +TG+ L + AH D V F+ D + I
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 159 TSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR 196
T S D +I D++T N + G+ D L+LW+ + +
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 197 KILKTYSGYTNS 208
+ T G+TNS
Sbjct: 741 ECRNTMFGHTNS 752
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL- 79
GH +AV +++F+ DG+ L SSS + S+ + N+ + LQ H++ + D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSED------SVIQVWNWQTGDYVFLQ---AHQETVKDFR 1058
Query: 80 -------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRI 126
T+++W+V T + H V + + + S + ++T +I
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 127 WDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172
W L L H+ V F+ DG ++ T +G RI + S
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 27/149 (18%)
Query: 3 SDRSLESFRPYTLTQTLN--GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
+D++L+ F+ T + L+ H V FS D + + SA+K + +DS
Sbjct: 642 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK--------KVKIWDS 693
Query: 61 TPPSPLQKFTGHEQGISD-----------LAT------IRLWDVPTATSLKTLIGHTNYV 103
+ + H + ++ LAT ++LWD+ T+ GHTN V
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 753
Query: 104 FCINFNPQSNRIVSDTFNETIRIWDIKTG 132
F+P + S + + T+R+WD+++
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----------PPSPL 66
T+ GH +V++ +FS D LL S SA+ TL + + S + S PP +
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 67 QKFT--------GHEQGISDLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSNRIVS 117
+ G + ++ + L+D+ T+ L + GH + + +F+P + V
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS--TPN 175
+ +W+I + + H V + F+ DG+ +T+S D R+ + N
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 176 GKFILVGTLD 185
+L +D
Sbjct: 925 SAIVLKQEID 934
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 32/214 (14%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80
GHL V V FS DG ++S ++T+ + + + E LA
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 81 TIRLWDVPTATSLKTLIGHTN--------YVFCINFNPQSNRIVSDTFNETIRIWDIKTG 132
V L+ + G T V C +P + + I+I ++
Sbjct: 947 ------VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF-------------- 178
+ H V I F DG +++SS D + ++ + T + F
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1060
Query: 179 ----ILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+L + D T+++WN T +I + ++ + +
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1094
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNG 176
V+ H+D V F++DG I + D ++ A T +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 177 KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215
+I + D +++W+ +T K++ TY ++ C T
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI----- 76
H AV + FS DG+ + S A+KTL F + L HE +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQV--------FKAETGEKLLDIKAHEDEVLCCAF 665
Query: 77 ----SDLAT------IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET--I 124
S +AT +++WD T + T H+ V C +F +SN ++ T + +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGK 177
++WD+ +C + H++ V F+ D ++ + S DG R+ D + N +
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
HT+ V+ F+ RI S ++T++++ +TG+ L + AH D V F+ D + I
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 159 TSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR 196
T S D +I D++T N + G+ D L+LW+ + +
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 197 KILKTYSGYTNS 208
+ T G+TNS
Sbjct: 734 ECRNTMFGHTNS 745
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL- 79
GH +AV +++F+ DG+ L SSS + S+ + N+ + LQ H++ + D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSED------SVIQVWNWQTGDYVFLQ---AHQETVKDFR 1051
Query: 80 -------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRI 126
T+++W+V T + H V + + + S + ++T +I
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 127 WDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172
W L L H+ V F+ DG ++ T +G RI + S
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 27/149 (18%)
Query: 3 SDRSLESFRPYTLTQTLN--GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
+D++L+ F+ T + L+ H V FS D + + SA+K + +DS
Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK--------KVKIWDS 686
Query: 61 TPPSPLQKFTGHEQGISD-----------LAT------IRLWDVPTATSLKTLIGHTNYV 103
+ + H + ++ LAT ++LWD+ T+ GHTN V
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746
Query: 104 FCINFNPQSNRIVSDTFNETIRIWDIKTG 132
F+P + S + + T+R+WD+++
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----------PPSPL 66
T+ GH +V++ +FS D LL S SA+ TL + + S + S PP +
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 67 QKFT--------GHEQGISDLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSNRIVS 117
+ G + ++ + L+D+ T+ L + GH + + +F+P + V
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS--TPN 175
+ +W+I + + H V + F+ DG+ +T+S D R+ + N
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 176 GKFILVGTLD 185
+L +D
Sbjct: 918 SAIVLKQEID 927
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 32/214 (14%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80
GHL V V FS DG ++S ++T+ + + + E LA
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 81 TIRLWDVPTATSLKTLIGHTN--------YVFCINFNPQSNRIVSDTFNETIRIWDIKTG 132
V L+ + G T V C +P + + I+I ++
Sbjct: 940 ------VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF-------------- 178
+ H V I F DG +++SS D + ++ + T + F
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053
Query: 179 ----ILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
+L + D T+++WN T +I + ++ + +
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNG 176
V+ H+D V F++DG I + D ++ A T +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 177 KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215
+I + D +++W+ +T K++ TY ++ C T
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 70/283 (24%)
Query: 11 RPYTLTQT-LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF 69
+ Y + Q L GH V V S DG+ S S + L + L++ + ++F
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS--------TRRF 468
Query: 70 TGHEQGISDLA---------------TIRLWDVPTATSLKTLI-----GHTNYVFCINFN 109
GH + + +A TI+LW+ T K I GH ++V C+ F+
Sbjct: 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFS 526
Query: 110 PQSNR--IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167
P + + IVS ++++T+++W++ K L H+ V+ + + DG++ + DG+
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
Query: 168 ILDAS-------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTY------ 202
+ D + +PN ++ L ++ +++W+ ++ I++
Sbjct: 587 LWDLAEGKKLYSLEANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKA 645
Query: 203 -------SGYTNSK----YCISSTFSVTNGKYIVSHRDPVISV 234
SG +K YC S +S + D VI V
Sbjct: 646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 48/237 (20%)
Query: 14 TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
L T+ H V+ + D ++ S+S +K+++ + L+ D ++ TGH
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD---DKAYGVAQRRLTGH 429
Query: 73 EQGISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
+ D+ +RLWD+ S + +GHT V + F+ + +IVS
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 118 DTFNETIRIWDIKTGKCLKVL----PAHSDPVTAIDF--NRDGTMIVTSSYDGLYRILD- 170
+ + TI++W+ G+C + H D V+ + F N IV++S+D ++ +
Sbjct: 490 ASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 171 -------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
A +P+G G D + LW+ + K K YS NS
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEANS 603
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKV 137
T LWDV + L++ GH V C++ P N VS ++ +WD+++G+C++
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235
Query: 138 LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD------ASTPNGKFILVGTLDNTLRLW 191
H V ++ + G + S D R+ D + + + I+ G L
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294
Query: 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND 251
S R + Y+ YT + + + V+ + H + V ++ P SG+ D+
Sbjct: 295 --SGRLLFAGYNDYTINVWDVLKGSRVS---ILFGHENRVSTLRVSPDGTAFCSGSWDH- 348
Query: 252 RTMKIWT 258
T+++W
Sbjct: 349 -TLRVWA 354
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 51/180 (28%)
Query: 90 ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID 149
A K++ HTNY+ +F +I++ + + T +WD+++G+ L+ H V +D
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203
Query: 150 FNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209
A + G + G D +W+ + + ++ +
Sbjct: 204 L--------------------APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE------ 237
Query: 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA---------LDNDRTMKIWTQE 260
+H V SV +P+ + ASG+ L DR + I+++E
Sbjct: 238 ----------------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 37/178 (20%)
Query: 15 LTQTLNGHLRAVSYVKF--SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
L Q+ +GH V + S G S +K + + + S +Q F H
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--------GQCVQAFETH 239
Query: 73 EQGI---------------SDLATIRLWD------VPTATSLKTLIGHTNYVFCINFNPQ 111
E + SD AT RL+D V + + G ++ F +
Sbjct: 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL----- 294
Query: 112 SNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
S R++ +N+ TI +WD+ G + +L H + V+ + + DGT + S+D R+
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 2 SSDRSLESFRPYTLTQTLNGHLRAV---SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF 58
S D++ + ++ +L L H +V V FS + + LT+S+ + L + I F
Sbjct: 121 SWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSEN-KFLTASADKTIKLWQNDKVIKTF 179
Query: 59 DSTPPSPLQKFT----GHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
++ GH S+ I+L D T L+T GH ++V+CI P +
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD- 238
Query: 115 IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
IVS + T+RIW + G +V+ + + ++D +G +IV SS D L RI
Sbjct: 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSS-DNLVRIF 292
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 69/289 (23%)
Query: 6 SLESFRPYTLTQTLNGHLRAV---------SYVKFSHDGRLLTSSSAEKTLLTYSLSSIS 56
++ F Y L+ TL GH + V S DG + S ++ L T +
Sbjct: 1 GIDPFTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG 60
Query: 57 NFDST---PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113
+S L F G + I+ + L+ L TLIGH V ++F Q
Sbjct: 61 FLNSVCYDSEKELLLFGGKDTXIN---GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG 115
Query: 114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV---TAIDFNRDGTMIVTSSYDGLYRILD 170
++S ++++T ++W K G + L AH+ V + F+ + +T+S D ++
Sbjct: 116 VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQ 171
Query: 171 -------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211
A +G FI D ++L + T +L+TY G+ + YC
Sbjct: 172 NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYC 230
Query: 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260
I P +I++ G DRT++IW++E
Sbjct: 231 IKLL----------------------PNGDIVSCG---EDRTVRIWSKE 254
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI----- 76
H AV + FS DG+ + S A+KTL F + L + HE +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQV--------FKAETGEKLLEIKAHEDEVLCCAF 671
Query: 77 -SD---LAT------IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-----SDTFN 121
+D +AT +++W+ T + T H+ V C +F S+ ++ SD F
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF- 730
Query: 122 ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN 175
+++WD+ +C + H++ V F+ D ++ + S DG ++ DA++ N
Sbjct: 731 --LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK---FTGHEQGISD 78
H + V +++F+ D + L SSS + + ++ L K GH++ + D
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ------------LDKCIFLRGHQETVKD 1055
Query: 79 L--------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
T+++W++ T K + H V + + + + S + ++T
Sbjct: 1056 FRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTA 1115
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFI 179
+IW L L H+ V F+ D T++ T +G RI + S NG+ +
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS--NGELL 1168
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
HT+ V+ F+ RI S ++T++++ +TG+ L + AH D V F+ D I
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 159 TSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR 196
T S D +I ++ T + + G+ D L+LW+ + +
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 197 KILKTYSGYTNS 208
+ T G+TNS
Sbjct: 740 ECRNTMFGHTNS 751
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 3 SDRSLESFRPYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS---ISN 57
+D++L+ F+ T + L H V FS D R + + S +K + ++ + +
Sbjct: 641 ADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHT 700
Query: 58 FDS-TPPSPLQKFTGHEQ------GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
+D + FT G SD ++LWD+ T+ GHTN V F+P
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSD-CFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 759
Query: 111 QSNRIVSDTFNETIRIWD 128
+ S + + T+++WD
Sbjct: 760 DDKLLASCSADGTLKLWD 777
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 57/254 (22%), Positives = 93/254 (36%), Gaps = 36/254 (14%)
Query: 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80
GHL V V FS DG +SS ++T+ + + + E + LA
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 81 T--IRLWDVPTATSLKTLIGHTNY-----VFCINFNPQSNRIVSDTFNETIRIWDIKTGK 133
IR + + G +Y V C +P I N I I ++ +
Sbjct: 946 VDHIRRLQLINGRT-----GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFIL--------VGTLD 185
+ H V I F D +++SS D ++ + F+ L
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLK 1060
Query: 186 NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV-ASHPAKNIIA 244
N+ RL ++S +K ++ T +K K V H+ V+S SH A +
Sbjct: 1061 NS-RLLSWSFDGTVKVWNIITGNKE-----------KDFVCHQGTVLSCDISHDATKFSS 1108
Query: 245 SGALDNDRTMKIWT 258
+ A D+T KIW+
Sbjct: 1109 TSA---DKTAKIWS 1119
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 50/205 (24%)
Query: 77 SDLATIRLWDVPTATSL-KTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDI-KTGK 133
SD T++LW+ +L +T GH ++V C+ FNP+ + S + T+++W + ++
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 134 CLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST------------------ 173
+ V +D+ D ++T+S D +I D T
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231
P I+ G+ D TL++WN ST K+ KT + +CI
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI------------------- 276
Query: 232 ISVASHPA--KNIIASGALDNDRTM 254
A+HP KN IASG DN T+
Sbjct: 277 ---ATHPTGRKNYIASG-FDNGFTV 297
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 13 YTLTQTLNGHLRAVSYVKFS-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
+ L QT GH V V F+ D S ++T+ +SL STP L TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLT--TG 182
Query: 72 HEQGI-----------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
E+G+ SD TI++WD T + + TL GH + V F+P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 115 IVSDTFNETIRIWDIKTGKCLKVL 138
I+S + + T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 44/186 (23%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
KT ++ V I+F+P +++ ++ + +W+ +T ++ + PV A F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNY 193
I+ S D R+ + +T P ++L G+ D T++LWN+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 194 STRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252
L +T+ G+ + C++ + +DP + ASG L DR
Sbjct: 127 ENNWALEQTFEGHEHFVMCVA-----------FNPKDP----------STFASGCL--DR 163
Query: 253 TMKIWT 258
T+K+W+
Sbjct: 164 TVKVWS 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 52/223 (23%)
Query: 63 PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
P KF + I SD IR+++ T + H +Y+ I +P ++S +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
+ T+++W+ + L + H V + FN +D + + D ++ L STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 ---------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
+++ + D T+++W+Y T+ + T G
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
H V HP II SG+ D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 50/205 (24%)
Query: 77 SDLATIRLWDVPTATSL-KTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDI-KTGK 133
SD T++LW+ +L +T GH ++V C+ FNP+ + S + T+++W + ++
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 134 CLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST------------------ 173
+ V +D+ D ++T+S D +I D T
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231
P I+ G+ D TL++WN ST K+ KT + +CI
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI------------------- 276
Query: 232 ISVASHPA--KNIIASGALDNDRTM 254
A+HP KN IASG DN T+
Sbjct: 277 ---ATHPTGRKNYIASG-FDNGFTV 297
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 13 YTLTQTLNGHLRAVSYVKFS-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
+ L QT GH V V F+ D S ++T+ +SL STP L TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLT--TG 182
Query: 72 HEQGI-----------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
E+G+ SD TI++WD T + + TL GH + V F+P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 115 IVSDTFNETIRIWDIKTGKCLKVL 138
I+S + + T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 44/186 (23%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
KT ++ V I+F+P +++ ++ + +W+ +T ++ + PV A F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNY 193
I+ S D R+ + +T P ++L G+ D T++LWN+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 194 STRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252
L +T+ G+ + C++ + +DP + ASG L DR
Sbjct: 127 ENNWALEQTFEGHEHFVMCVA-----------FNPKDP----------STFASGCL--DR 163
Query: 253 TMKIWT 258
T+K+W+
Sbjct: 164 TVKVWS 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 52/223 (23%)
Query: 63 PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
P KF + I SD IR+++ T + H +Y+ I +P ++S +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
+ T+++W+ + L + H V + FN +D + + D ++ L STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 ---------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
+++ + D T+++W+Y T+ + T G
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
H V HP II SG+ D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
+TL GHL + + + D RLL S+S + L+ + + + + P PS
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
G I + ++ + S + L GHT Y+ C F N+IV+ + + T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
+WDI+TG+ H+ V ++ D + V+ + D ++ D
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
PNG G+ D T RL++ + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T LWD+ T T GHT V ++ P + VS + + ++WD++ G C +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
H + AI F +G T S D R+ D + + +G+
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
+L G D +W+ +G+ N C+ T +V G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI----------SNFDSTPPS 64
+++ L GH +S +F D +++TSS + T + + + + S +
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
P + G D A+ +LWDV +T GH + + I F P N + + + T
Sbjct: 194 PDTRL--FVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 125 RIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSSYDGLYRILDA---------- 171
R++D++ + L +H + +T++ F++ G +++ D + DA
Sbjct: 251 RLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 172 ----------STPNGKFILVGTLDNTLRLWN 192
T +G + G+ D+ L++WN
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 47/187 (25%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+TL GH ++ +++ S +VS + + + IWD T + +P S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS----------- 97
Query: 154 GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNSK 209
+ ++T +Y P+G ++ G LDN ++N TR ++ + +G+T
Sbjct: 98 -SWVMTCAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 210 YC---------ISSTFSVTNGKYIVS----------HRDPVISVASHPAKNIIASGALDN 250
C ++S+ T + + H V+S++ P + SGA
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-- 204
Query: 251 DRTMKIW 257
D + K+W
Sbjct: 205 DASAKLW 211
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 50/205 (24%)
Query: 77 SDLATIRLWDVPTATSL-KTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDI-KTGK 133
SD T++LW+ +L +T GH ++V C+ FNP+ + S + T+++W + ++
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 134 CLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST------------------ 173
+ V +D+ D ++T+S D +I D T
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231
P I+ G+ D TL++WN ST K+ KT + +CI
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI------------------- 276
Query: 232 ISVASHPA--KNIIASGALDNDRTM 254
A+HP KN IASG DN T+
Sbjct: 277 ---ATHPTGRKNYIASG-FDNGFTV 297
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 13 YTLTQTLNGHLRAVSYVKFS-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
+ L QT GH V V F+ D S ++T+ +SL STP L TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLT--TG 182
Query: 72 HEQGI-----------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
E+G+ SD TI++WD T + + TL GH + V F+P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 115 IVSDTFNETIRIWDIKTGKCLKVL 138
I+S + + T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 44/186 (23%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
KT ++ V I+F+P +++ ++ + +W+ +T ++ + PV A F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNY 193
I+ S D R+ + +T P ++L G+ D T++LWN+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 194 STRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252
L +T+ G+ + C++ + +DP + ASG L DR
Sbjct: 127 ENNWALEQTFEGHEHFVMCVA-----------FNPKDP----------STFASGCL--DR 163
Query: 253 TMKIWT 258
T+K+W+
Sbjct: 164 TVKVWS 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 52/223 (23%)
Query: 63 PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
P KF + I SD IR+++ T + H +Y+ I +P ++S +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
+ T+++W+ + L + H V + FN +D + + D ++ L STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 -----GK----------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
G+ +++ + D T+++W+Y T+ + T G
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
H V HP II SG+ D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
+TL GHL + + + D RLL S+S + L+ + + + + P PS
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
G I + ++ + S + L GHT Y+ C F N+IV+ + + T
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 177
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
+WDI+TG+ H+ V ++ D + V+ + D ++ D
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
PNG G+ D T RL++ + L TYS
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 276
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T LWD+ T T GHT V ++ P + VS + + ++WD++ G C +
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
H + AI F +G T S D R+ D + + +G+
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 295
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
+L G D +W+ +G+ N C+ T +V G +
Sbjct: 296 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL-------------SSISNFDST 61
+++ L GH +S +F D +++TSS + T + + + +
Sbjct: 146 VSRELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 204
Query: 62 PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
P + L G D A+ +LWDV +T GH + + I F P N + + +
Sbjct: 205 PDTRL-----FVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 258
Query: 122 ETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSSYDGLYRILDA------- 171
T R++D++ + L +H + +T++ F++ G +++ D + DA
Sbjct: 259 ATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 317
Query: 172 -------------STPNGKFILVGTLDNTLRLWN 192
T +G + G+ D+ L++WN
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 47/187 (25%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+TL GH ++ +++ S +VS + + + IWD T + +P S
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS----------- 108
Query: 154 GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNSK 209
+ ++T +Y P+G ++ G LDN ++N TR ++ + +G+T
Sbjct: 109 -SWVMTCAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 157
Query: 210 YC---------ISSTFSVTNGKYIVS----------HRDPVISVASHPAKNIIASGALDN 250
C ++S+ T + + H V+S++ P + SGA
Sbjct: 158 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-- 215
Query: 251 DRTMKIW 257
D + K+W
Sbjct: 216 DASAKLW 222
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
+TL GHL + + + D RLL S+S + L+ + + + + P PS
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
G I + ++ + S + L GHT Y+ C F N+IV+ + + T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
+WDI+TG+ H+ V ++ D + V+ + D ++ D
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
PNG G+ D T RL++ + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T LWD+ T T GHT V ++ P + VS + + ++WD++ G C +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
H + AI F +G T S D R+ D + + +G+
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
+L G D +W+ +G+ N C+ T +V G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL-------------SSISNFDST 61
+++ L GH +S +F D +++TSS + T + + + +
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 62 PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
P + L G D A+ +LWDV +T GH + + I F P N + + +
Sbjct: 194 PDTRL-----FVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 122 ETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSSYDGLYRILDA------- 171
T R++D++ + L +H + +T++ F++ G +++ D + DA
Sbjct: 248 ATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 172 -------------STPNGKFILVGTLDNTLRLWN 192
T +G + G+ D+ L++WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 47/187 (25%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+TL GH ++ +++ S +VS + + + IWD T + +P S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS----------- 97
Query: 154 GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNSK 209
+ ++T +Y P+G ++ G LDN ++N TR ++ + +G+T
Sbjct: 98 -SWVMTCAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 210 YC---------ISSTFSVTNGKYIVS----------HRDPVISVASHPAKNIIASGALDN 250
C ++S+ T + + H V+S++ P + SGA
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-- 204
Query: 251 DRTMKIW 257
D + K+W
Sbjct: 205 DASAKLW 211
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 50/205 (24%)
Query: 77 SDLATIRLWDVPTATSL-KTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDI-KTGK 133
SD T++LW+ +L +T GH ++V C+ FNP+ + S + T+++W + ++
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 134 CLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST------------------ 173
+ V +D+ D ++T+S D +I D T
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231
P I+ G+ D TL++WN ST K+ KT + +CI
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI------------------- 276
Query: 232 ISVASHPA--KNIIASGALDNDRTM 254
A+HP KN IASG DN T+
Sbjct: 277 ---ATHPTGRKNYIASG-FDNGFTV 297
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 13 YTLTQTLNGHLRAVSYVKFS-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
+ L QT GH V V F+ D S ++T+ +SL STP L TG
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLT--TG 182
Query: 72 HEQGI-----------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
E+G+ SD TI++WD T + + TL GH + V F+P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 115 IVSDTFNETIRIWDIKTGKCLKVL 138
I+S + + T++IW+ T K K L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL 266
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 44/186 (23%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
KT ++ V I+F+P +++ ++ + IW+ +T ++ + PV A F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNY 193
I+ S D R+ + +T P ++L G+ D T++LWN+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 194 STRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252
L +T+ G+ + C++ + +DP + ASG L DR
Sbjct: 127 ENNWALEQTFEGHEHFVMCVA-----------FNPKDP----------STFASGCL--DR 163
Query: 253 TMKIWT 258
T+K+W+
Sbjct: 164 TVKVWS 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 52/223 (23%)
Query: 63 PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
P KF + I SD IR+++ T + H +Y+ I +P ++S +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
+ T+++W+ + L + H V + FN +D + + D ++ L STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 -----GK----------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
G+ +++ + D T+++W+Y T+ + T G
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
H V HP II SG+ D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T+ +WDV L L GHT+ ++ ++ + R +S + + TIRIWD++ G+ + L
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF 178
H+ V + + +V+++ DG R DA+ + KF
Sbjct: 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 54/216 (25%)
Query: 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
+D IR++D L L GH V+ + + +VS + + T+R+WDIK G C
Sbjct: 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 137 VLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYRIL----DASTPN--------------- 175
V H+ V +D ++ IVT S D + ++S P+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 176 ----------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY--- 210
G ++ G+ DNTL +W+ + K L SG+T+ Y
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 211 -------CISSTFSVTNGKYIVSHRDPVISVASHPA 239
CIS++ T + + + + + ++ H A
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 54/228 (23%)
Query: 5 RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS 64
R +S L Q L+GH V +K++H G +L S S ++T+ + D
Sbjct: 145 RVYDSINKKFLLQ-LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW--------DIKKGC 194
Query: 65 PLQKFTGHEQGISDL-----------------ATIRLWDVPTATSL-------------- 93
F GH + L T+ +W +P +S+
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 94 ---------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
L GH V ++ N +VS +++ T+ +WD+ KCL +L H+D
Sbjct: 255 TPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 145 VTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVG--TLDNTLRL 190
+ + ++ + +++S D RI D + L G L LRL
Sbjct: 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
+TL GHL + + + D RLL S+S + L+ + + + + P PS
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
G I + ++ + S + L GHT Y+ C F N+IV+ + + T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
+WDI+TG+ H+ V ++ D + V+ + D ++ D
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
PNG G+ D T RL++ + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T LWD+ T T GHT V ++ P + VS + + ++WD++ G C +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
H + AI F +G T S D R+ D + + +G+
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
+L G D +W+ +G+ N C+ T +V G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL-------------SSISNFDST 61
+++ L GH +S +F D +++TSS + T + + + +
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 62 PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
P + L G D A+ +LWDV +T GH + + I F P N + + +
Sbjct: 194 PDTRL-----FVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 122 ETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSSYDGLYRILDA------- 171
T R++D++ + L +H + +T++ F++ G +++ D + DA
Sbjct: 248 ATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 172 -------------STPNGKFILVGTLDNTLRLWN 192
T +G + G+ D+ L++WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 47/187 (25%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+TL GH ++ +++ S ++S + + + IWD T + +P S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS----------- 97
Query: 154 GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNSK 209
+ ++T +Y P+G ++ G LDN ++N TR ++ + +G+T
Sbjct: 98 -SWVMTCAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 210 YC---------ISSTFSVTNGKYIVS----------HRDPVISVASHPAKNIIASGALDN 250
C ++S+ T + + H V+S++ P + SGA
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-- 204
Query: 251 DRTMKIW 257
D + K+W
Sbjct: 205 DASAKLW 211
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
+TL GHL + + + D RLL S+S + L+ + + + + P PS
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65 PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
G I + ++ + S + L GHT Y+ C F N+IV+ + + T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
+WDI+TG+ H+ V ++ D + V+ + D ++ D
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
PNG G+ D T RL++ + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T LWD+ T T GHT V ++ P + VS + + ++WD++ G C +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
H + AI F +G T S D R+ D + + +G+
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
+L G D +W+ +G+ N C+ T +V G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL-------------SSISNFDST 61
+++ L GH +S +F D +++TSS + T + + + +
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 62 PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
P + L G D A+ +LWDV +T GH + + I F P N + + +
Sbjct: 194 PDTRL-----FVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 122 ETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSSYDGLYRILDA------- 171
T R++D++ + L +H + +T++ F++ G +++ D + DA
Sbjct: 248 ATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 172 -------------STPNGKFILVGTLDNTLRLWN 192
T +G + G+ D+ L++WN
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 47/187 (25%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+TL GH ++ +++ S ++S + + + IWD T + +P S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS----------- 97
Query: 154 GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNSK 209
+ ++T +Y P+G ++ G LDN ++N TR ++ + +G+T
Sbjct: 98 -SWVMTCAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 210 YC---------ISSTFSVTNGKYIVS----------HRDPVISVASHPAKNIIASGALDN 250
C ++S+ T + + H V+S++ P + SGA
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-- 204
Query: 251 DRTMKIW 257
D + K+W
Sbjct: 205 DASAKLW 211
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 77 SDLATIRLWDVPTA-------TSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWD 128
S+ T+ +W++P + TL GHT V + ++P + N ++S + I +WD
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 129 IKTGKCLKVL--PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
+ TG + L H D + ++D++RDG +I TS D R+++
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 37 LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------- 80
L+ +S L L D P GH + D+A
Sbjct: 49 LICEASGGGAFLVLPLGKTGRVDKNVP----LVCGHTAPVLDIAWCPHNDNVIASGSEDC 104
Query: 81 TIRLWDVPTA-------TSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTG 132
T+ +W++P + TL GHT V + ++P + N ++S + I +WD+ TG
Sbjct: 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Query: 133 KCLKVL--PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
+ L H D + ++D++RDG +I TS D R+++
Sbjct: 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
T+ +WDV L L GHT+ ++ ++ + R +S + + TIRIWD++ G+ L
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQG 350
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF 178
H+ V + + +V+++ DG R DA+ + KF
Sbjct: 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 32/185 (17%)
Query: 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
+D IR++D L L GH V+ + + +VS + + T+R+WDIK G C
Sbjct: 139 ADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR 196
V H+ V +D N K+I+ G+ DNTL +W
Sbjct: 198 VFEGHNSTVRCLDI--------------------VEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 197 KILKTYSGYTNSKYCISSTFSVTNGKYIV----SHRDPVISVASHPAKNIIASGALDNDR 252
+ + + + Y V H V +V+ H NI+ SG+ DN
Sbjct: 238 SSVPDHGEEHDYPLVFHTP---EENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDN-- 290
Query: 253 TMKIW 257
T+ +W
Sbjct: 291 TLIVW 295
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 54/228 (23%)
Query: 5 RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS 64
R +S L Q L+GH V +K++H G +L S S ++T+ + D
Sbjct: 145 RVYDSINKKFLLQ-LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW--------DIKKGC 194
Query: 65 PLQKFTGHEQGISDL-----------------ATIRLWDVPTATSL-------------- 93
F GH + L T+ +W +P +S+
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 94 ---------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
L GH V ++ N +VS +++ T+ +WD+ KCL +L H+D
Sbjct: 255 TPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 145 VTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVG--TLDNTLRL 190
+ + ++ + +++S D RI D + L G L LRL
Sbjct: 313 IYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAI 148
+A+S KT TN V C+ ++ N IV+ N +R+W+ KTG L VL H P+ ++
Sbjct: 101 SASSGKT----TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSV 155
Query: 149 DFNRDGTMIVT 159
+N+DGT I++
Sbjct: 156 KWNKDGTHIIS 166
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 61 TPPSPLQKFTGHEQGIS---------------DLATIRLWDVPTATSLKTLIGHTNYVFC 105
T +P K GH IS D T+R+W S GH+ +
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS 294
Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
++ ++++S + + ++R+W +K L + P+ A ++DG + DG
Sbjct: 295 ASW-VGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353
Query: 166 YRILDASTPNGK 177
+ D N K
Sbjct: 354 VNVYDLKKLNSK 365
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP 139
I ++ + T LIGH + + FN + ++S + + T+RIW G
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 140 AHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
HS + + + D +++ S DG R+
Sbjct: 287 GHSQSIVSASWVGD-DKVISCSMDGSVRL 314
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 63/240 (26%)
Query: 15 LTQTLNGHLRAVSYVKF--SHDGRLLTSSSAEKTLLTYSLSS---ISNFDSTPPSPLQKF 69
+++ L GH S ++ + RL+T S ++T + + +++ IS F S PS
Sbjct: 149 VSRVLTGHKGYASSCQYVPDQETRLITGS-GDQTCVLWDVTTGQRISIFGSEFPS----- 202
Query: 70 TGHEQGISDLA----------------TIRLWDVP-TATSLKTLIGHTNYVFCINFNPQS 112
GH + L+ T+RLWD+ T+ +++T GH + + F P
Sbjct: 203 -GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-------VTAIDFNRDGTMI-------- 157
R + + + T R++D++TG L+V D VT++ F+ G ++
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 158 -----------------VTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYST-RKIL 199
+ +S++G L S+ +G + G+ D L++W +S RKI+
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 46/210 (21%)
Query: 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE-- 73
T + H V F+ +G+ + + ++LSS ++ D P + TGH+
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-RVLTGHKGY 159
Query: 74 ----QGISDLAT----------IRLWDVPTATSLKTL-----IGHTNYVFCINFNP-QSN 113
Q + D T LWDV T + GHT V ++ N +N
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 114 RIVSDTFNETIRIWDIK-TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172
+S + + T+R+WD++ T + ++ H + ++ F DG T S DG
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG-------- 271
Query: 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTY 202
T RL++ T L+ Y
Sbjct: 272 --------------TCRLFDMRTGHQLQVY 287
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
+TL GH+ V+ +++ P+ N IVS + + + +W+ T + + H V F
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF--- 116
Query: 154 GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR----------KILKTYS 203
PNG+ + G LD+ ++N S++ ++L +
Sbjct: 117 -------------------APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK 157
Query: 204 GYTNS 208
GY +S
Sbjct: 158 GYASS 162
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS----PLQKFTGHE 73
TL+GH + V ++++ DGR L S + ++ + S P PLQ FT H+
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNL--------VNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 74 QGISDLA------------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
+ +A IR+W+V + L + H+ V I ++P +
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 335
Query: 116 VSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
+S + IW T + L H+ V ++ + DG + +++ D R+
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
+W PT + L GHT+ V + +P + S +ET+R+W +C ++ PA
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-----RCFELDPA 399
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 53/227 (23%)
Query: 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVL 138
A ++LWDV L+ + H+ V +++N S + S + + I D++ + + L
Sbjct: 169 AEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV----------------- 181
HS V + + DG + + D L + ++ G ++ +
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 182 ----------GTLDNTLRLWNYSTRKILKTYS---------------------GYTNSKY 210
GT D +R+WN + L G+ ++
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 346
Query: 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
I ++ + H V+S+ P +AS A D T+++W
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA--DETLRLW 391
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 44/201 (21%)
Query: 81 TIRLWDVPTATSLKTLIGHT--NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL 138
++ LW + L+ L Y+ + + + N + T + +++WD++ K L+ +
Sbjct: 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS---------------------TPNGK 177
+HS V ++ +N ++ + S G D P+G+
Sbjct: 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 178 FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASH 237
+ G DN + +W S + TF+ H+ V +VA
Sbjct: 244 HLASGGNDNLVNVWP----------SAPGEGGWVPLQTFT--------QHQGAVKAVAWC 285
Query: 238 PAK-NIIASGALDNDRTMKIW 257
P + N++A+G +DR ++IW
Sbjct: 286 PWQSNVLATGGGTSDRHIRIW 306
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS----PLQKFTGHE 73
TL+GH + V ++++ DGR L S + ++ + S P PLQ FT H+
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNL--------VNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 74 QGISDLA------------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
+ +A IR+W+V + L + H+ V I ++P +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 255
Query: 116 VSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
+S + IW T + L H+ V ++ + DG + +++ D R+
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP 139
+W PT + L GHT+ V + +P + S +ET+R+W +C ++ P
Sbjct: 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-----RCFELDP 318
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 44/180 (24%)
Query: 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVL 138
A ++LWDV L+ + H+ V +++N S + S + + I D++ + + L
Sbjct: 89 AEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKI 198
HS V + + DG + + D L + ++ G ++
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV------------------P 188
Query: 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIW 257
L+T++ H+ V +VA P + N++A+G +DR ++IW
Sbjct: 189 LQTFT----------------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS----PLQKFTGHE 73
TL+GH + V ++++ DGR L S + ++ + S P PLQ FT H+
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNL--------VNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 74 QGISDLA------------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
+ +A IR+W+V + L + H+ V I ++P +
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 346
Query: 116 VSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
+S + IW T + L H+ V ++ + DG + +++ D R+
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
+W PT + L GHT+ V + +P + S +ET+R+W +C ++ PA
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-----RCFELDPA 410
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 53/227 (23%)
Query: 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVL 138
A ++LWDV L+ + H+ V +++N S + S + + I D++ + + L
Sbjct: 180 AEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV----------------- 181
HS V + + DG + + D L + ++ G ++ +
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 182 ----------GTLDNTLRLWNYSTRKILKTYS---------------------GYTNSKY 210
GT D +R+WN + L G+ ++
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 357
Query: 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
I ++ + H V+S+ P +AS A D T+++W
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE--TLRLW 402
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 44/201 (21%)
Query: 81 TIRLWDVPTATSLKTLIGHT--NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL 138
++ LW + L+ L Y+ + + + N + T + +++WD++ K L+ +
Sbjct: 137 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS---------------------TPNGK 177
+HS V ++ +N ++ + S G D P+G+
Sbjct: 197 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 178 FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASH 237
+ G DN + +W S + TF+ H+ V +VA
Sbjct: 255 HLASGGNDNLVNVWP----------SAPGEGGWVPLQTFT--------QHQGAVKAVAWC 296
Query: 238 PAK-NIIASGALDNDRTMKIW 257
P + N++A+G +DR ++IW
Sbjct: 297 PWQSNVLATGGGTSDRHIRIW 317
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 30/156 (19%)
Query: 74 QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG 132
+G + L+D T TS L G + ++F P + RI+S + + T+ I++
Sbjct: 123 EGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180
Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG---LYRILDAS----------------- 172
K H+ V ++ +N DG++ ++ DG LY +D +
Sbjct: 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240
Query: 173 -------TPNGKFILVGTLDNTLRLWNYSTRKILKT 201
+P+G I + D T+++WN +T K+ KT
Sbjct: 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 73/217 (33%)
Query: 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD 59
S D ++ F P+ T H + V V+++ DG L S+ + T++ Y
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY--------- 217
Query: 60 STPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
G+ T D SLK + H+ VF + ++P +I S +
Sbjct: 218 --------------NGVDGTKTGVFED----DSLKN-VAHSGSVFGLTWSPDGTKIASAS 258
Query: 120 FNETIRIWDIKTGKCLKVLP---------------------------------------- 139
++TI+IW++ T K K +P
Sbjct: 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318
Query: 140 ---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
H+ +TA+ + DG + ++ +G D ST
Sbjct: 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 32/108 (29%)
Query: 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81
H ++ V FS++G L ++ + ++ YS+++ NF+ LA
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN--NFE-------------------LAH 528
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI 129
W HT V C++++P + R+ + + + ++ +W++
Sbjct: 529 TNSWTF-----------HTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 29/187 (15%)
Query: 22 HLRAVSYVK-FSHDGRLLTSSSAEKTLLTYSLSSIS-----NFDSTPPSPLQKFTGHEQG 75
H +V V+ + HD + TSSS +KTL + +++ NF+ T S +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 76 ISDLAT----IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIK 130
+ + T ++L D+ + + L GH + ++++P+ + I++ + + +++WD++
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 131 TGK-CLKVLP---------------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP 174
CL L AH+ V + F DG ++T D R+ ++S
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS-- 275
Query: 175 NGKFILV 181
NG+ LV
Sbjct: 276 NGENTLV 282
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR---IVSDTFNETIRIWDIKTGKCLKV 137
T+++WD T + + V+ + +P S + + T +++ D+K+G C +
Sbjct: 123 TLKVWDTNTLQTAD-VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181
Query: 138 LPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDN 186
L H + A+ ++ R ++ T+S D ++ D +G I TLD
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI---TLDQ 228
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36 RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
RLL S + A++ T + + +DS PL G +GI IR+ + T
Sbjct: 58 RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 107
Query: 93 LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
+K +GH N + + F+P+ N ++S + + +R+W+I+T + + ++ +
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 160
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
RD ++++ YD L G+ I+ +D++L+LW ++++++
Sbjct: 161 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 196
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 44/135 (32%)
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDASTPNGKFILVG 182
IRI + T +C+K H + + + F+ RD ++++ S D
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD------------------- 137
Query: 183 TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242
+ LRLWN T ++ + G + HRD V+S
Sbjct: 138 ---HALRLWNIQTDTLVAIFGG-------------------VEGHRDEVLSADYDLLGEK 175
Query: 243 IASGALDNDRTMKIW 257
I S +D+ ++K+W
Sbjct: 176 IMSCGMDH--SLKLW 188
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 66 LQKFTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCI 106
++ + GH I++L +RLW++ T T + + GH + V
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143
+++ +I+S + ++++W I + + + + D
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36 RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
RLL S + A++ T + + +DS PL G +GI IR+ + T
Sbjct: 94 RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 143
Query: 93 LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
+K +GH N + + F+P+ N ++S + + +R+W+I+T + + ++ +
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 196
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
RD ++++ YD L G+ I+ +D++L+LW ++++++
Sbjct: 197 RD--EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 232
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 44/135 (32%)
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDASTPNGKFILVG 182
IRI + T +C+K H + + + F+ RD ++++ S D
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD------------------- 173
Query: 183 TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242
+ LRLWN T ++ + G + HRD V+S
Sbjct: 174 ---HALRLWNIQTDTLVAIFGG-------------------VEGHRDEVLSADYDLLGEK 211
Query: 243 IASGALDNDRTMKIW 257
I S +D+ ++K+W
Sbjct: 212 IMSCGMDH--SLKLW 224
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 66 LQKFTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCI 106
++ + GH I++L +RLW++ T T + + GH + V
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143
+++ +I+S + ++++W I + + + + D
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36 RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
RLL S + A++ T + + +DS PL G +GI IR+ + T
Sbjct: 53 RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 102
Query: 93 LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
+K +GH N + + F+P+ N ++S + + +R+W+I+T + + ++ +
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 155
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
RD ++++ YD L G+ I+ +D++L+LW ++++++
Sbjct: 156 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 191
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 44/135 (32%)
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDASTPNGKFILVG 182
IRI + T +C+K H + + + F+ RD ++++ S D
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD------------------- 132
Query: 183 TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242
+ LRLWN T ++ + G + HRD V+S
Sbjct: 133 ---HALRLWNIQTDTLVAIFGG-------------------VEGHRDEVLSADYDLLGEK 170
Query: 243 IASGALDNDRTMKIW 257
I S +D+ ++K+W
Sbjct: 171 IMSCGMDH--SLKLW 183
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 66 LQKFTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCI 106
++ + GH I++L +RLW++ T T + + GH + V
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143
+++ +I+S + ++++W I + + + + D
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36 RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
RLL S + A++ T + + +DS PL G +GI IR+ + T
Sbjct: 57 RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 106
Query: 93 LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
+K +GH N + + F+P+ N ++S + + +R+W+I+T + + ++ +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 159
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
RD ++++ YD L G+ I+ +D++L+LW ++++++
Sbjct: 160 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 195
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 44/135 (32%)
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDASTPNGKFILVG 182
IRI + T +C+K H + + + F+ RD ++++ S D
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD------------------- 136
Query: 183 TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242
+ LRLWN T ++ + G + HRD V+S
Sbjct: 137 ---HALRLWNIQTDTLVAIFGG-------------------VEGHRDEVLSADYDLLGEK 174
Query: 243 IASGALDNDRTMKIW 257
I S +D+ ++K+W
Sbjct: 175 IMSCGMDH--SLKLW 187
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 66 LQKFTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCI 106
++ + GH I++L +RLW++ T T + + GH + V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143
+++ +I+S + ++++W I + + + + D
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36 RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
RLL S + A++ T + + +DS PL G +GI IR+ + T
Sbjct: 57 RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 106
Query: 93 LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
+K +GH N + + F+P+ N ++S + + +R+W+I+T + + ++ +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 159
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
RD ++++ YD L G+ I+ +D++L+LW ++++++
Sbjct: 160 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 195
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 44/135 (32%)
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDASTPNGKFILVG 182
IRI + T +C+K H + + + F+ RD ++++ S D
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD------------------- 136
Query: 183 TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242
+ LRLWN T ++ + G + HRD V+S
Sbjct: 137 ---HALRLWNIQTDTLVAIFGG-------------------VEGHRDEVLSADYDLLGEK 174
Query: 243 IASGALDNDRTMKIW 257
I S +D+ ++K+W
Sbjct: 175 IMSCGMDH--SLKLW 187
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 66 LQKFTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCI 106
++ + GH I++L +RLW++ T T + + GH + V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143
+++ +I+S + ++++W I + + + + D
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 57/194 (29%)
Query: 2 SSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST 61
S+DR+ E L + GH V V +S+DG L + S +K++ + S +
Sbjct: 90 SADRTFE----MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE-SGEEYE 144
Query: 62 PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
S LQ+ H Q + K +I H P + S +++
Sbjct: 145 CISVLQE---HSQDV-----------------KHVIWH----------PSEALLASSSYD 174
Query: 122 ETIRIWD--IKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFI 179
+T+RIW +C+ VL H V + DF++ +G++R+
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK---------TEGVFRLCS--------- 216
Query: 180 LVGTLDNTLRLWNY 193
G+ D+T+R+W Y
Sbjct: 217 --GSDDSTVRVWKY 228
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261
+H+ + SVA P +++A+G+ D+ T+ IW +E+
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDS--TVSIWAKEE 89
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 26/116 (22%)
Query: 103 VFCINFNPQS---NRIVSDTFNETIRIWDIK-TGKCL-KVLPAHSDPVTAIDFNRDGTMI 157
+ C++F+P + N +++ ++ +R W+++ +G+ + K H+ PV + ++ DG+ +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 158 VTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWN 192
T+S D ++ D S+ PN ++ G+ D TL+ W+
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
+++W V ++ +TLIGH V I + ++S + + TIR+W+ TG +
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222
Query: 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN------GKFILVGTLDNTLRLWN-YS 194
+P + + + + L+ I + N GK+++ G + + + N +S
Sbjct: 223 ENPHDGV----NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278
Query: 195 TRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
+ ++ S +T S C S T N YI
Sbjct: 279 KEQTIQLPSKFTCS--CNSLTVDGNNANYI 306
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
H + + + F P ++S + + ++IW +K G + L H VT I
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI---------- 187
Query: 159 TSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
A G+ +L +LD T+RLW T + T++ N
Sbjct: 188 ------------AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
+++W V ++ +TLIGH V I + ++S + + TIR+W+ TG +
Sbjct: 160 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 219
Query: 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN------GKFILVGTLDNTLRLWN-YS 194
+P + + + + L+ I + N GK+++ G + + + N +S
Sbjct: 220 ENPHDGV----NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 275
Query: 195 TRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
+ ++ S +T S C S T N YI
Sbjct: 276 KEQTIQLPSKFTCS--CNSLTVDGNNANYI 303
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
H + + + F P ++S + + ++IW +K G + L H VT I
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI---------- 184
Query: 159 TSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
A G+ +L +LD T+RLW T + T++ N
Sbjct: 185 ------------AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 30/196 (15%)
Query: 82 IRLWDVPTATSL-KTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLK 136
IR+W + + K+++ GH V + ++P N + S +F+ T IW +C+
Sbjct: 40 IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT 99
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLR-----LW 191
L H + V ++ + G ++ T S D + + + ++ V L++ + +W
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVW 158
Query: 192 NYSTRKI--------LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII 243
+ S + +K Y + C ++ + H V S+A P+ +
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCAT---------LEGHESTVWSLAFDPSGQRL 209
Query: 244 ASGALDNDRTMKIWTQ 259
AS +DRT++IW Q
Sbjct: 210 AS--CSDDRTVRIWRQ 223
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 22/132 (16%)
Query: 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
+ TL GH V V ++ G LL + S +K++ + + ++ + H
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-----VSVLNSH 149
Query: 73 EQGISDLA---------------TIRLW--DVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
Q + + T++L+ + TL GH + V+ + F+P R+
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 116 VSDTFNETIRIW 127
S + + T+RIW
Sbjct: 210 ASCSDDRTVRIW 221
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 77 SDLATIRLWDV--PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
+ +T+ +WD+ PT L + + +P S S + I +WD+
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYS 194
++ H+D + ID + DGT + T G LDNT+R W+
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWT----------------------GGLDNTVRSWDLR 213
Query: 195 TRKILKTY 202
+ L+ +
Sbjct: 214 EGRQLQQH 221
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 25/138 (18%)
Query: 80 ATIRLWDV-----PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
+++WD+ + S + NY+ P ++ T+ IWD+
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA--- 128
Query: 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYS 194
P I +TSS Y + A +P+ K D + +W+
Sbjct: 129 ---------PTPRIKAE------LTSSAPACYAL--AISPDSKVCFSCCSDGNIAVWDLH 171
Query: 195 TRKILKTYSGYTNSKYCI 212
+ +++ + G+T+ CI
Sbjct: 172 NQTLVRQFQGHTDGASCI 189
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPA 140
+ ++DV + T L+T+ GH V C+++N + + S + + I D++ + L
Sbjct: 158 VDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV------------------- 181
HS V + + DG + + D + +I DA + KF
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275
Query: 182 ----GTLDNTLRLWNYSTRKILKT 201
GT+D + WN +T + T
Sbjct: 276 ATGGGTMDKQIHFWNAATGARVNT 299
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 54/221 (24%)
Query: 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78
L GH R ++ VK++ +G LL S S +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKD---------------------------------- 53
Query: 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL 138
++ +W L TL GHT ++ I+ + + V+ + + +I++WD+ G+C+
Sbjct: 54 -SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112
Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDN---TLRLWNYST 195
+ PV ++F+ G + ILD N I + ++ T L S
Sbjct: 113 KS-PVPVKRVEFSPCGNYFLA--------ILDNVMKNPGSINIYEIERDSATHELTKVSE 163
Query: 196 RKILK--TYSGYTNSKYCISSTFSVTNGKYIVS-HRDPVIS 233
I K T+ G + S T GKYI++ H+D IS
Sbjct: 164 EPIHKIITHEGLDAATVAGWS----TKGKYIIAGHKDGKIS 200
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 22/126 (17%)
Query: 69 FTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCINFN 109
FTGH + D+A + +WD + T+ K + HT V C++FN
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 110 PQSNRIVS-DTFNETIRIWDIKTGKC-LKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLY 166
P S I++ + ++T+ +WD++ K L +H D + + ++ + T++ +S D
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 167 RILDAS 172
+ D S
Sbjct: 345 NVWDLS 350
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 77/205 (37%), Gaps = 64/205 (31%)
Query: 69 FTGHEQGISDLATIRLWDVPTATSLKTLI-------GHTNYVFCINFNPQSNRI---VSD 118
+GH SD T+ LWD+ ++ GH+ V + ++ + V+D
Sbjct: 191 LSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 119 TFNETIRIWDIK---TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN 175
++ + IWD + T K ++ AH+ V + FN P
Sbjct: 251 --DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN----------------------PY 286
Query: 176 GKFILV-GTLDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233
+FIL G+ D T+ LW+ K+ L T+ SH+D +
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFE----------------------SHKDEIFQ 324
Query: 234 VASHPA-KNIIASGALDNDRTMKIW 257
V P + I+AS DR + +W
Sbjct: 325 VHWSPHNETILASSG--TDRRLNVW 347
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 21/114 (18%)
Query: 69 FTGHEQGISDLA----------------TIRLWDVPTATSLKT---LIGHTNYVFCINFN 109
FTGH + D+A + +WD + T+ K + HT V C++FN
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 110 PQSNRIVS-DTFNETIRIWDIKTGKC-LKVLPAHSDPVTAIDFNRDGTMIVTSS 161
P S I++ + ++T+ +WD++ K L +H D + + ++ I+ SS
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 64/209 (30%)
Query: 69 FTGHEQGISDLATIRLWDVPTATSLKTLI-------GHTNYVFCINFNPQSNRI---VSD 118
+GH SD T+ LWD+ ++ GH+ V + ++ + V+D
Sbjct: 191 LSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 119 TFNETIRIWDIK---TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN 175
++ + IWD + T K ++ AH+ V + FN P
Sbjct: 251 --DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN----------------------PY 286
Query: 176 GKFILV-GTLDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233
+FIL G+ D T+ LW+ K+ L T+ SH+D +
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFE----------------------SHKDEIFQ 324
Query: 234 VASHPA-KNIIASGALDNDRTMKIWTQEK 261
V P + I+AS DR + +W K
Sbjct: 325 VHWSPHNETILASSG--TDRRLNVWDLSK 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 76 ISDLATIRLWDVPTATSLK---TLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKT 131
++D + +WD + K T+ HT V C++FNP S I++ + ++T+ +WD++
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 132 GKC-LKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDAS 172
K L +H D + + ++ + T++ +S D + D S
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 76 ISDLATIRLWDVPTATSLK---TLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKT 131
++D + +WD + K T+ HT V C++FNP S I++ + ++T+ +WD++
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 132 GKC-LKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDAS 172
K L +H D + + ++ + T++ +S D + D S
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 76 ISDLATIRLWDVPTATSLK---TLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKT 131
++D + +WD + K T+ HT V C++FNP S I++ + ++T+ +WD++
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 132 GKC-LKVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDAS 172
K L +H D + + ++ + T++ +S D + D S
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 80 ATIRLWDVPTATSL------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK 133
ATIR+WDV T+ + K +G+ N RI+S + + T+ +++ +
Sbjct: 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN---GRIISLSLDGTLNFYELGHDE 330
Query: 134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
LK + H+ +TA+ N +++ SYDG RI++ S+
Sbjct: 331 VLKTISGHNKGITALTVNP----LISGSYDG--RIMEWSS 364
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 121 NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFIL 180
+ TIR+WD+ T KC++ + D + G ++ +T NG+ I
Sbjct: 273 DATIRVWDVTTSKCVQ------------KWTLDKQQL------GNQQVGVVATGNGRIIS 314
Query: 181 VGTLDNTLRLWNYSTRKILKTYSGY 205
+ +LD TL + ++LKT SG+
Sbjct: 315 L-SLDGTLNFYELGHDEVLKTISGH 338
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 99 HTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157
++V + F+P S +++ + I +D K+G+ LK + +PV
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG---------- 254
Query: 158 VTSSYDGLYRI--LDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
G++ + LD+ KF VG D T+R+W+ +T K ++ ++
Sbjct: 255 ------GIFALSWLDSQ----KFATVGA-DATIRVWDVTTSKCVQKWT 291
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 87 VPTATSLKTL--IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
VPT +S +L H+++V ++FN + S ++ +R WD+KT + + L H D
Sbjct: 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335
Query: 145 V 145
+
Sbjct: 336 I 336
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 70 TGHEQG---ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV----SDTFNE 122
TG G IS+L+T+R + S ++I ++N + + F+PQ + + S++F
Sbjct: 202 TGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG- 258
Query: 123 TIRIWDIKTGKCLKVLP-------------AHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
I +++ + G+ + L AHS V ++ FN G + ++ +DG R
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318
Query: 170 DAST 173
D T
Sbjct: 319 DVKT 322
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 87 VPTATSLKTL--IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
VPT +S +L H+++V ++FN + S ++ +R WD+KT + + L H D
Sbjct: 286 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 345
Query: 145 V 145
+
Sbjct: 346 I 346
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 70 TGHEQG---ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV----SDTFNE 122
TG G IS+L+T+R + S ++I ++N + + F+PQ + + S++F
Sbjct: 212 TGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG- 268
Query: 123 TIRIWDIKTGKCLKVLP-------------AHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
I +++ + G+ + L AHS V ++ FN G + ++ +DG R
Sbjct: 269 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 328
Query: 170 DAST 173
D T
Sbjct: 329 DVKT 332
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 76 ISDLATIRLWDVPTATSLK---TLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKT 131
++D + +WD + + K ++ HT V C++FNP S I++ + ++T+ +WD++
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
Query: 132 GKC-LKVLPAHSDPVTAIDFNRDGTMIVTSS 161
K L +H D + + ++ I+ SS
Sbjct: 306 LKLKLHSFESHKDEIFQVQWSPHNETILASS 336
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 62/204 (30%)
Query: 69 FTGHEQGISDLATIRLWDVPTATSLKTLI-------GHTNYVFCINFNPQSNRI---VSD 118
+GH SD TI LWD+ ++ GHT V ++++ + V+D
Sbjct: 189 LSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVAD 248
Query: 119 TFNETIRIWDIK---TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN 175
++ + IWD + T K + AH+ V + FN P
Sbjct: 249 --DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN----------------------PY 284
Query: 176 GKFILV-GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234
+FIL G+ D T+ LW+ K LK +S SH+D + V
Sbjct: 285 SEFILATGSADKTVALWDLRNLK-LKLHS--------------------FESHKDEIFQV 323
Query: 235 ASHPA-KNIIASGALDNDRTMKIW 257
P + I+AS DR + +W
Sbjct: 324 QWSPHNETILASSG--TDRRLNVW 345
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 80 ATIRLWDVPTATSL------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK 133
ATIR+WDV T+ + K +G+ N RI+S + + T+ +++ +
Sbjct: 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN---GRIISLSLDGTLNFYELGHDE 330
Query: 134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164
LK + H+ +TA+ N +++ SYDG
Sbjct: 331 VLKTISGHNKGITALTVNP----LISGSYDG 357
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 121 NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFIL 180
+ TIR+WD+ T KC++ + D + G ++ +T NG+ I
Sbjct: 273 DATIRVWDVTTSKCVQ------------KWTLDKQQL------GNQQVGVVATGNGRIIS 314
Query: 181 VGTLDNTLRLWNYSTRKILKTYSGY 205
+ +LD TL + ++LKT SG+
Sbjct: 315 L-SLDGTLNFYELGHDEVLKTISGH 338
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 24/106 (22%)
Query: 101 NYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT 159
++V + F+P S +++ + I +D K+G+ LK + +PV
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG------------ 254
Query: 160 SSYDGLYRI--LDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
G++ + LD+ KF VG D T+R+W+ +T K ++ ++
Sbjct: 255 ----GIFALSWLDSQ----KFATVGA-DATIRVWDVTTSKCVQKWT 291
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 66/228 (28%)
Query: 81 TIRLWDVPTATS--LKTLIGHTNYVFCINF-NPQSNRIVSD-TFNETIRIWDIKTGKC-- 134
TI++++V T + TL GH V+ +++ +P+ I++ +++ + IW + G+
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91
Query: 135 LKVLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYR-------------ILDA-------- 171
+ V HS V ++ + + G M++ +S DG I+DA
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151
Query: 172 --------------STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217
T + + G DN +++W Y++ Y + ST
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLE 201
Query: 218 VTNGKYIVSHRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEKE 262
H D V VA P ++ +AS + DRT IWTQ+ E
Sbjct: 202 --------GHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE 239
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 66/228 (28%)
Query: 81 TIRLWDVPTATS--LKTLIGHTNYVFCINF-NPQSNRIVSD-TFNETIRIWDIKTGKC-- 134
TI++++V T + TL GH V+ +++ +P+ I++ +++ + IW + G+
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91
Query: 135 LKVLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYR-------------ILDA-------- 171
+ V HS V ++ + + G +++ +S DG I+DA
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151
Query: 172 --------------STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217
T + + G DN +++W Y++ Y + ST
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLE 201
Query: 218 VTNGKYIVSHRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEKE 262
H D V VA P ++ +AS + DRT IWTQ+ E
Sbjct: 202 --------GHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 239
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 66/228 (28%)
Query: 81 TIRLWDVPTATS--LKTLIGHTNYVFCINF-NPQSNRIVSD-TFNETIRIWDIKTGKC-- 134
TI++++V T + TL GH V+ +++ +P+ I++ +++ + IW + G+
Sbjct: 34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 93
Query: 135 LKVLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYR-------------ILDA-------- 171
+ V HS V ++ + + G +++ +S DG I+DA
Sbjct: 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 153
Query: 172 --------------STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217
T + + G DN +++W Y++ Y + ST
Sbjct: 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLE 203
Query: 218 VTNGKYIVSHRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEKE 262
H D V VA P ++ +AS + DRT IWTQ+ E
Sbjct: 204 --------GHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 241
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 90 ATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKT--GKC--LKVLPAHSDP 144
L L H V + NP + + + + ++T++IWD++ GK L LP H P
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHP 298
Query: 145 VTAIDFNRDGTMIVTSSYDGLYRILDAS 172
V A F+ DG ++T+ R+ AS
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYSAS 326
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 90 ATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKT--GKC--LKVLPAHSDP 144
L L H V + NP + + + + ++T++IWD++ GK L LP H P
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHP 299
Query: 145 VTAIDFNRDGTMIVTSSYDGLYRILDAS 172
V A F+ DG ++T+ R+ AS
Sbjct: 300 VNAACFSPDGARLLTTDQKSEIRVYSAS 327
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 90 ATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKT--GKC--LKVLPAHSDP 144
L L H V + NP + + + + ++T++IWD++ GK L LP H P
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHP 298
Query: 145 VTAIDFNRDGTMIVTSSYDGLYRILDAS 172
V A F+ DG ++T+ R+ AS
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYSAS 326
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 66/228 (28%)
Query: 81 TIRLWDVPTATS--LKTLIGHTNYVFCINF-NPQSNRIV-SDTFNETIRIWDIKTGKC-- 134
TI++++V T + TL GH V+ +++ +P+ I+ S +++ + IW + G+
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91
Query: 135 LKVLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYR-------------ILDA-------- 171
+ V HS V ++ + + G +++ +S DG I+DA
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151
Query: 172 --------------STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217
T + + G DN +++W Y++ Y + ST
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLE 201
Query: 218 VTNGKYIVSHRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEKE 262
H D V VA P ++ +AS + DRT IWTQ+ E
Sbjct: 202 --------GHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 239
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDG-LYRILDASTPNGKFI 179
++ AH++PV + NR G M+ T S DG L R+ T NG +
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVF--QTDNGVLV 215
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 62/226 (27%)
Query: 81 TIRLWDVPTATS--LKTLIGHTNYVFCINF-NPQSNRIVSD-TFNETIRIWDIKTGKC-- 134
TI++++V T + TL GH V+ +++ +P+ I++ +++ + IW + G+
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQ 91
Query: 135 LKVLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYR-------------ILDA-------- 171
+ V HS V ++ + + G ++ +S DG I+DA
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151
Query: 172 --------------STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217
T + + G DN +++W Y++ Y + ST
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLE 201
Query: 218 VTNGKYIVSHRDPVISVASHPAKNIIASGA-LDNDRTMKIWTQEKE 262
H D V VA P + + A + DRT IWTQ+ E
Sbjct: 202 --------GHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNE 239
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI--VSHRDPVISVASHPAKNI 242
DN +W Y + + Y Y+NSK C S + ++ + +AS A N+
Sbjct: 137 DNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANYEQHGVGLASVRAGNV 196
Query: 243 IASGALDNDRTM 254
I G DR +
Sbjct: 197 IGGGDWAKDRLI 208
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTS 160
+ C +N +I N + I++ K ++V L H+ VT ID+ D IVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 161 SYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL-----KTYSGYTNSKYCISST 215
D + K LV LR+ N + R + K ++ + S+
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLV-----ILRI-NRAARCVRWAPNEKKFAVGSGSRVISICY 124
Query: 216 FSVTNGKYIVSH-----RDPVISVASHPAKNIIASGALD 249
F N ++ H R V+S+ HP ++A+G+ D
Sbjct: 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 73 EQGI---SDLATIRLWDVPTATSLKTLIG------HTNYVFCINFNPQSNRIVSDTFNET 123
E+GI SD + LW++ SL L+ H + V ++ + VS + +
Sbjct: 105 EKGILVASDSGAVELWEILEKESL--LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162
Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYRILDASTP 174
+++WD+ LK AHS V + +D T+ ++ DG + D P
Sbjct: 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKP 214
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
+G + G D ++++W+ S + +LK+Y+ +++ C+++
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTS 160
+ C +N +I N + I++ K ++V L H+ VT +D+ D IVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 161 SYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL-----KTYSGYTNSKYCISST 215
D + K LV LR+ N + R + K ++ + S+
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLV-----ILRI-NRAARCVRWAPNEKKFAVGSGSRVISICY 124
Query: 216 FSVTNGKYIVSH-----RDPVISVASHPAKNIIASGALD 249
F N ++ H R V+S+ HP ++A+G+ D
Sbjct: 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
>pdb|1OD0|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OD0|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIF|A Chain A, Family 1 B-glucosidase From Thermotoga Maritima
pdb|1OIF|B Chain B, Family 1 B-glucosidase From Thermotoga Maritima
pdb|1OIM|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIM|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIN|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIN|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1W3J|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Tetrahydrooxazine
pdb|1W3J|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Tetrahydrooxazine
pdb|1UZ1|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Isofagomine Lactam
pdb|1UZ1|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Isofagomine Lactam
pdb|2CBU|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Castanospermine
pdb|2CBU|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Castanospermine
pdb|2CBV|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Calystegine B2
pdb|2CBV|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Calystegine B2
pdb|2CES|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Glucoimidazole
pdb|2CES|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Glucoimidazole
pdb|2CET|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenethyl-Substituted Glucoimidazole
pdb|2CET|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenethyl-Substituted Glucoimidazole
pdb|2J77|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Deoxynojirimycin
pdb|2J77|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Deoxynojirimycin
pdb|2J78|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Hydroximolactam
pdb|2J78|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Hydroximolactam
pdb|2J79|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Galacto-Hydroximolactam
pdb|2J79|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Galacto-Hydroximolactam
pdb|2J7B|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Tetrazole
pdb|2J7B|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Tetrazole
pdb|2J7C|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenylaminomethyl-Derived Glucoimidazole
pdb|2J7C|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenylaminomethyl-Derived Glucoimidazole
pdb|2J7D|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Methoxycarbonyl-substituted Glucoimidazole
pdb|2J7D|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Methoxycarbonyl-substituted Glucoimidazole
pdb|2J7E|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Methyl Acetate-Substituted Glucoimidazole
pdb|2J7E|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Methyl Acetate-Substituted Glucoimidazole
pdb|2J7F|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Carboxylate-substituted Glucoimidazole
pdb|2J7F|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Carboxylate-substituted Glucoimidazole
pdb|2J7G|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Methyl Acetic Acid-substituted Glucoimidazole
pdb|2J7G|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Methyl Acetic Acid-substituted Glucoimidazole
pdb|2J7H|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Azafagomine
pdb|2J7H|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Azafagomine
pdb|2J75|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Noeuromycin
pdb|2J75|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Noeuromycin
pdb|2JAL|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Cyclophellitol
pdb|2JAL|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Cyclophellitol
pdb|2VRJ|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
N- Octyl-5-Deoxy-6-Oxa-N-(Thio)carbamoylcalystegine
pdb|2VRJ|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
N- Octyl-5-Deoxy-6-Oxa-N-(Thio)carbamoylcalystegine
pdb|2WBG|A Chain A, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WBG|B Chain B, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WBG|C Chain C, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WBG|D Chain D, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WC3|A Chain A, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC3|B Chain B, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC3|C Chain C, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC3|D Chain D, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC4|A Chain A, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
pdb|2WC4|B Chain B, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
pdb|2WC4|C Chain C, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
pdb|2WC4|D Chain D, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
Length = 468
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 73 EQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127
E+GI+ TI WD+P A LK G N F + +R++ + F + ++ W
Sbjct: 132 EKGITPFVTIYHWDLPFALQLKG--GWANREIADWF-AEYSRVLFENFGDRVKNW 183
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI--VSHRDPVISVASHPAKNI 242
DN +W Y + + Y Y+NSK C S + ++ +VA+ A N+
Sbjct: 137 DNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNV 196
Query: 243 IASGALDNDRTM 254
I G DR +
Sbjct: 197 IGGGDWALDRIV 208
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDG 164
++ AH++P+ + NR M+ T S DG
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDG 217
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGK 133
I++WD+ L + H V C+ +P + + +S + + I +WD + K
Sbjct: 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 896 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 941
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 881 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 926
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 896 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 941
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 896 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 941
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 896 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 941
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 895 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 940
>pdb|4GXP|A Chain A, Chimeric Family 1 Beta-Glucosidase Made With
Non-Contiguous Schema
pdb|4GXP|B Chain B, Chimeric Family 1 Beta-Glucosidase Made With
Non-Contiguous Schema
pdb|4GXP|C Chain C, Chimeric Family 1 Beta-Glucosidase Made With
Non-Contiguous Schema
Length = 467
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 73 EQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127
E+GI+ TI WD+P A LK + + ++ + +R++ + F + ++ W
Sbjct: 117 EKGITPFVTIFHWDLPFALQLKGGLLNRE---IADWFAEYSRVLFENFGDRVKNW 168
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 877 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 922
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225
NGK L+ ++++T+RL+ ++T K L+T + N+ I + + T G +I+
Sbjct: 887 NGK--LLASINSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFIL 932
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 123 TIRIWDIKTGKCLKVLPAHSD 143
TI IWD+ G+C +LP SD
Sbjct: 306 TIAIWDLLLGQCTALLPPVSD 326
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 123 TIRIWDIKTGKCLKVLPAHSD 143
TI IWD+ G+C +LP SD
Sbjct: 306 TIAIWDLLLGQCTALLPPVSD 326
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205
+P KF+ D + WN TRK +K ++ +
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205
+P KF+ D + WN TRK +K ++ +
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205
+P KF+ D + WN TRK +K ++ +
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205
+P KF+ D + WN TRK +K ++ +
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,829,947
Number of Sequences: 62578
Number of extensions: 315719
Number of successful extensions: 1753
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 358
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)