Query 042146
Match_columns 262
No_of_seqs 433 out of 1442
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 03:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 3E-44 6.4E-49 266.9 18.5 225 2-258 194-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 1.6E-41 3.4E-46 250.0 20.8 229 2-262 134-441 (480)
3 KOG0286 G-protein beta subunit 100.0 5.3E-39 1.1E-43 228.9 24.0 231 2-258 74-343 (343)
4 KOG0271 Notchless-like WD40 re 100.0 8.9E-40 1.9E-44 240.8 18.7 225 2-258 176-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-40 1.3E-44 244.0 14.5 208 21-260 173-418 (459)
6 KOG0279 G protein beta subunit 100.0 4.2E-37 9E-42 217.9 23.8 219 13-261 5-263 (315)
7 KOG0263 Transcription initiati 100.0 1.8E-38 3.8E-43 252.6 17.2 189 14-261 442-650 (707)
8 KOG0279 G protein beta subunit 100.0 7.1E-37 1.5E-41 216.7 22.3 236 2-261 35-314 (315)
9 KOG0315 G-protein beta subunit 100.0 5.1E-36 1.1E-40 209.4 23.3 228 2-261 17-289 (311)
10 KOG0286 G-protein beta subunit 100.0 8.4E-36 1.8E-40 212.7 23.9 226 12-260 44-303 (343)
11 KOG0318 WD40 repeat stress pro 100.0 3.3E-35 7.2E-40 224.6 26.2 221 2-261 167-561 (603)
12 KOG0284 Polyadenylation factor 100.0 6.9E-37 1.5E-41 227.0 16.3 235 3-260 116-380 (464)
13 KOG0291 WD40-repeat-containing 100.0 1.2E-35 2.6E-40 235.6 24.2 156 81-260 331-508 (893)
14 KOG0285 Pleiotropic regulator 100.0 6.4E-36 1.4E-40 218.9 20.4 234 12-261 140-440 (460)
15 KOG0263 Transcription initiati 100.0 6.9E-36 1.5E-40 237.9 19.8 217 17-261 372-608 (707)
16 KOG0295 WD40 repeat-containing 100.0 1.4E-35 3.1E-40 217.1 19.6 217 13-261 98-365 (406)
17 KOG0282 mRNA splicing factor [ 100.0 1.6E-36 3.4E-41 229.4 14.7 219 8-258 199-503 (503)
18 KOG0276 Vesicle coat complex C 100.0 2.8E-35 6E-40 229.3 19.1 223 14-260 4-257 (794)
19 KOG0293 WD40 repeat-containing 100.0 1.7E-35 3.7E-40 220.2 16.9 193 12-260 213-513 (519)
20 KOG0316 Conserved WD40 repeat- 100.0 2.1E-34 4.4E-39 200.0 19.7 218 12-261 6-258 (307)
21 KOG0283 WD40 repeat-containing 100.0 1.9E-34 4.1E-39 231.3 21.8 225 12-260 255-576 (712)
22 KOG0291 WD40-repeat-containing 100.0 3.3E-34 7.1E-39 227.6 22.9 240 7-261 334-613 (893)
23 KOG0295 WD40 repeat-containing 100.0 8.8E-35 1.9E-39 213.0 17.4 227 2-259 127-405 (406)
24 KOG0273 Beta-transducin family 100.0 9.1E-34 2E-38 214.0 23.2 234 2-260 254-523 (524)
25 KOG0319 WD40-repeat-containing 100.0 2.1E-34 4.5E-39 228.0 20.5 227 5-259 346-618 (775)
26 KOG0266 WD40 repeat-containing 100.0 7.2E-34 1.6E-38 229.3 23.7 231 2-261 178-455 (456)
27 KOG0315 G-protein beta subunit 100.0 7.8E-34 1.7E-38 198.5 20.6 207 36-261 11-246 (311)
28 KOG0265 U5 snRNP-specific prot 100.0 8.4E-33 1.8E-37 198.0 21.5 231 3-258 67-336 (338)
29 KOG0266 WD40 repeat-containing 100.0 2.2E-32 4.8E-37 220.7 25.8 220 15-261 150-410 (456)
30 KOG0273 Beta-transducin family 100.0 1.3E-32 2.8E-37 207.8 22.2 205 23-261 235-483 (524)
31 KOG0265 U5 snRNP-specific prot 100.0 6.3E-33 1.4E-37 198.6 19.0 189 15-261 39-247 (338)
32 KOG0296 Angio-associated migra 100.0 4.2E-32 9.2E-37 199.1 23.6 215 14-260 55-398 (399)
33 KOG0645 WD40 repeat protein [G 100.0 8.2E-32 1.8E-36 190.4 23.3 191 13-259 4-224 (312)
34 KOG0275 Conserved WD40 repeat- 100.0 7.4E-34 1.6E-38 206.2 12.6 236 21-259 211-508 (508)
35 KOG0292 Vesicle coat complex C 100.0 1.8E-32 3.9E-37 221.3 21.6 223 7-262 35-323 (1202)
36 PLN00181 protein SPA1-RELATED; 100.0 1.9E-31 4.2E-36 229.6 29.3 217 19-260 479-738 (793)
37 KOG0318 WD40 repeat stress pro 100.0 1.2E-31 2.7E-36 205.2 23.9 229 9-261 45-351 (603)
38 KOG0281 Beta-TrCP (transducin 100.0 1.6E-33 3.6E-38 205.9 13.0 151 81-261 258-429 (499)
39 PTZ00421 coronin; Provisional 100.0 2.1E-31 4.6E-36 214.6 26.5 194 18-261 70-291 (493)
40 KOG0284 Polyadenylation factor 100.0 2E-33 4.2E-38 208.8 12.9 206 22-260 95-337 (464)
41 cd00200 WD40 WD40 domain, foun 100.0 6.2E-31 1.3E-35 201.1 27.1 232 3-258 29-289 (289)
42 cd00200 WD40 WD40 domain, foun 100.0 6.3E-31 1.4E-35 201.0 26.1 222 16-261 2-250 (289)
43 KOG0292 Vesicle coat complex C 100.0 6E-32 1.3E-36 218.4 19.2 213 17-261 3-281 (1202)
44 KOG0643 Translation initiation 100.0 8.3E-31 1.8E-35 185.1 22.4 230 18-261 5-318 (327)
45 KOG0278 Serine/threonine kinas 100.0 1.8E-32 4E-37 191.9 13.3 215 15-261 6-298 (334)
46 KOG0274 Cdc4 and related F-box 100.0 7.5E-31 1.6E-35 211.9 24.3 224 2-261 225-483 (537)
47 KOG0313 Microtubule binding pr 100.0 5.2E-31 1.1E-35 194.3 21.3 228 2-260 122-418 (423)
48 KOG0645 WD40 repeat protein [G 100.0 6.6E-31 1.4E-35 185.9 20.4 210 2-260 80-311 (312)
49 KOG1446 Histone H3 (Lys4) meth 100.0 4.9E-30 1.1E-34 185.1 24.8 227 12-261 3-263 (311)
50 PTZ00420 coronin; Provisional 100.0 5.1E-30 1.1E-34 207.8 27.9 208 4-261 53-294 (568)
51 KOG0640 mRNA cleavage stimulat 100.0 3.5E-30 7.7E-35 185.8 21.1 242 17-260 106-426 (430)
52 KOG1407 WD40 repeat protein [F 100.0 3.9E-30 8.4E-35 181.2 20.3 230 7-261 5-312 (313)
53 KOG0294 WD40 repeat-containing 100.0 4.2E-30 9.1E-35 185.4 19.8 188 13-261 33-282 (362)
54 KOG0277 Peroxisomal targeting 100.0 1E-30 2.2E-35 183.4 16.1 199 4-261 37-266 (311)
55 KOG0316 Conserved WD40 repeat- 100.0 9.9E-30 2.1E-34 176.8 20.0 220 3-259 37-298 (307)
56 KOG0305 Anaphase promoting com 100.0 1.2E-29 2.6E-34 198.5 21.7 225 6-261 198-462 (484)
57 KOG0276 Vesicle coat complex C 100.0 7.3E-30 1.6E-34 199.3 19.9 209 5-213 37-276 (794)
58 KOG0277 Peroxisomal targeting 100.0 1.9E-30 4.2E-35 182.1 14.0 199 2-259 80-308 (311)
59 PLN00181 protein SPA1-RELATED; 100.0 8.7E-29 1.9E-33 213.3 27.4 210 2-259 552-792 (793)
60 KOG2096 WD40 repeat protein [G 100.0 8.5E-30 1.9E-34 184.4 16.8 218 15-258 78-400 (420)
61 KOG0306 WD40-repeat-containing 100.0 6.4E-29 1.4E-33 197.6 21.2 210 5-261 434-665 (888)
62 KOG0319 WD40-repeat-containing 100.0 2.5E-29 5.5E-34 199.4 18.5 228 2-262 300-579 (775)
63 KOG0313 Microtubule binding pr 100.0 1.2E-28 2.6E-33 181.9 18.9 213 12-261 95-377 (423)
64 KOG0281 Beta-TrCP (transducin 100.0 2.1E-29 4.6E-34 184.4 14.8 173 22-261 196-389 (499)
65 KOG0288 WD40 repeat protein Ti 100.0 2.8E-29 6.1E-34 187.0 15.3 222 3-258 195-459 (459)
66 KOG0268 Sof1-like rRNA process 100.0 8.4E-29 1.8E-33 181.9 16.1 233 2-260 86-345 (433)
67 KOG0306 WD40-repeat-containing 100.0 4E-28 8.8E-33 193.1 20.3 154 81-260 395-580 (888)
68 KOG0973 Histone transcription 100.0 3.7E-28 8.1E-33 200.2 20.3 207 15-261 61-356 (942)
69 KOG0310 Conserved WD40 repeat- 100.0 2.4E-28 5.1E-33 185.5 17.4 190 11-260 56-268 (487)
70 KOG0772 Uncharacterized conser 100.0 2.3E-28 5.1E-33 187.1 17.3 245 11-257 155-484 (641)
71 KOG0264 Nucleosome remodeling 100.0 6.3E-28 1.4E-32 181.7 18.5 229 21-260 122-404 (422)
72 KOG1332 Vesicle coat complex C 100.0 1.9E-27 4.1E-32 166.2 19.5 205 2-260 30-286 (299)
73 KOG0647 mRNA export protein (c 100.0 2.5E-27 5.4E-32 170.3 20.4 204 20-260 24-281 (347)
74 KOG0285 Pleiotropic regulator 100.0 1E-28 2.3E-33 181.2 13.4 170 67-261 145-349 (460)
75 KOG0289 mRNA splicing factor [ 100.0 2.5E-27 5.5E-32 177.8 20.6 219 9-259 247-505 (506)
76 KOG0641 WD40 repeat protein [G 100.0 4.8E-26 1E-30 158.0 23.9 222 15-260 81-349 (350)
77 KOG0299 U3 snoRNP-associated p 100.0 5E-27 1.1E-31 177.3 19.6 234 16-261 135-411 (479)
78 PTZ00421 coronin; Provisional 100.0 2.6E-26 5.6E-31 185.3 25.2 167 2-203 95-299 (493)
79 KOG0308 Conserved WD40 repeat- 100.0 2.1E-27 4.5E-32 186.3 17.8 214 21-260 19-285 (735)
80 KOG0288 WD40 repeat protein Ti 100.0 2.6E-28 5.7E-33 181.9 11.6 221 12-261 164-418 (459)
81 KOG0300 WD40 repeat-containing 100.0 2.7E-27 5.8E-32 171.7 16.4 234 2-261 167-429 (481)
82 KOG0646 WD40 repeat protein [G 100.0 1.5E-26 3.4E-31 174.9 19.5 199 20-261 78-308 (476)
83 KOG1036 Mitotic spindle checkp 100.0 6.5E-26 1.4E-30 163.4 20.5 200 22-261 12-263 (323)
84 KOG0289 mRNA splicing factor [ 100.0 1.7E-26 3.7E-31 173.4 18.0 179 24-261 220-420 (506)
85 KOG0301 Phospholipase A2-activ 99.9 3.2E-26 7E-31 180.8 19.4 242 11-261 2-289 (745)
86 KOG0973 Histone transcription 99.9 3.7E-26 8E-31 188.5 20.5 215 21-260 11-312 (942)
87 KOG0282 mRNA splicing factor [ 99.9 9.3E-27 2E-31 176.8 15.2 195 64-261 205-463 (503)
88 KOG1274 WD40 repeat protein [G 99.9 3.3E-25 7.2E-30 180.1 24.8 211 21-260 11-262 (933)
89 PTZ00420 coronin; Provisional 99.9 5.5E-25 1.2E-29 178.7 25.8 185 37-261 32-249 (568)
90 KOG0274 Cdc4 and related F-box 99.9 2.9E-26 6.2E-31 185.4 18.2 200 22-261 207-442 (537)
91 KOG0641 WD40 repeat protein [G 99.9 3.8E-25 8.2E-30 153.6 21.0 203 13-261 23-304 (350)
92 KOG0310 Conserved WD40 repeat- 99.9 3.4E-25 7.4E-30 168.5 21.8 192 4-257 89-306 (487)
93 KOG4283 Transcription-coupled 99.9 6.5E-26 1.4E-30 162.8 16.7 210 20-261 40-277 (397)
94 KOG0299 U3 snoRNP-associated p 99.9 2.2E-25 4.8E-30 168.4 20.1 205 20-258 199-454 (479)
95 KOG0308 Conserved WD40 repeat- 99.9 1.3E-25 2.7E-30 176.4 19.4 255 2-260 92-393 (735)
96 KOG0301 Phospholipase A2-activ 99.9 3.5E-25 7.6E-30 175.0 21.2 219 2-238 32-289 (745)
97 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-24 2.7E-29 157.4 22.2 195 4-260 79-303 (311)
98 KOG0264 Nucleosome remodeling 99.9 4.9E-25 1.1E-29 166.2 19.3 179 15-194 169-404 (422)
99 KOG1332 Vesicle coat complex C 99.9 5.2E-26 1.1E-30 159.1 12.2 187 19-261 7-242 (299)
100 KOG1408 WD40 repeat protein [F 99.9 1.1E-24 2.5E-29 173.2 20.4 233 26-260 327-713 (1080)
101 KOG2445 Nuclear pore complex c 99.9 4.6E-24 1E-28 154.0 21.3 208 20-260 10-318 (361)
102 KOG0643 Translation initiation 99.9 1E-24 2.2E-29 154.5 16.6 170 4-173 31-221 (327)
103 KOG0267 Microtubule severing p 99.9 8.6E-27 1.9E-31 184.9 6.6 185 17-260 22-226 (825)
104 KOG2055 WD40 repeat protein [G 99.9 4.1E-24 8.8E-29 161.8 20.3 233 23-260 213-512 (514)
105 KOG0268 Sof1-like rRNA process 99.9 8.8E-26 1.9E-30 166.1 10.7 211 15-261 58-303 (433)
106 KOG0302 Ribosome Assembly prot 99.9 1.7E-24 3.6E-29 160.2 17.1 199 19-260 147-378 (440)
107 KOG0269 WD40 repeat-containing 99.9 3.6E-25 7.9E-30 176.9 14.7 196 2-256 107-336 (839)
108 KOG0300 WD40 repeat-containing 99.9 9.8E-25 2.1E-29 158.5 15.2 190 12-261 137-387 (481)
109 KOG0639 Transducin-like enhanc 99.9 1.6E-24 3.5E-29 166.0 16.8 214 21-260 417-663 (705)
110 KOG0296 Angio-associated migra 99.9 2.8E-24 6.1E-29 158.2 16.7 148 90-261 54-221 (399)
111 KOG0267 Microtubule severing p 99.9 1.3E-25 2.9E-30 178.2 9.8 176 15-247 62-257 (825)
112 KOG0270 WD40 repeat-containing 99.9 1.8E-24 3.9E-29 162.9 15.2 199 24-260 174-404 (463)
113 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-24 2.8E-29 168.2 14.7 199 12-261 283-562 (577)
114 KOG0269 WD40 repeat-containing 99.9 6.2E-24 1.3E-28 169.9 18.7 215 23-261 39-297 (839)
115 KOG1539 WD repeat protein [Gen 99.9 2.5E-23 5.5E-28 167.7 19.9 234 4-261 266-607 (910)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.4E-22 2E-26 152.0 27.6 233 2-261 8-280 (300)
117 KOG1273 WD40 repeat protein [G 99.9 8.6E-23 1.9E-27 148.1 20.0 185 15-260 17-226 (405)
118 KOG1036 Mitotic spindle checkp 99.9 6E-23 1.3E-27 148.2 19.0 183 2-247 32-293 (323)
119 KOG2048 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 160.4 21.8 215 22-260 24-275 (691)
120 KOG0321 WD40 repeat-containing 99.9 6.2E-23 1.3E-27 161.1 19.1 223 2-261 71-392 (720)
121 KOG0640 mRNA cleavage stimulat 99.9 2.4E-23 5.3E-28 150.7 14.9 145 94-259 106-290 (430)
122 KOG0772 Uncharacterized conser 99.9 8.4E-23 1.8E-27 156.9 18.7 219 21-241 212-490 (641)
123 KOG0303 Actin-binding protein 99.9 7.8E-23 1.7E-27 152.3 17.7 195 18-262 76-296 (472)
124 KOG0647 mRNA export protein (c 99.9 1.8E-22 3.8E-27 145.5 18.9 207 2-247 47-312 (347)
125 KOG1034 Transcriptional repres 99.9 9.7E-23 2.1E-27 148.4 17.7 153 20-173 35-212 (385)
126 KOG4283 Transcription-coupled 99.9 1.6E-22 3.4E-27 145.5 17.4 215 20-259 98-364 (397)
127 KOG4328 WD40 protein [Function 99.9 3.4E-22 7.4E-27 151.3 19.5 223 13-261 176-496 (498)
128 KOG0639 Transducin-like enhanc 99.9 4.1E-23 8.8E-28 158.4 14.5 229 5-259 440-703 (705)
129 KOG1273 WD40 repeat protein [G 99.9 8E-22 1.7E-26 143.1 20.4 234 3-260 43-322 (405)
130 KOG0646 WD40 repeat protein [G 99.9 7.3E-23 1.6E-27 155.2 15.5 171 7-204 107-317 (476)
131 KOG0275 Conserved WD40 repeat- 99.9 3.8E-23 8.3E-28 150.7 12.8 179 80-260 235-467 (508)
132 KOG2106 Uncharacterized conser 99.9 1.1E-21 2.3E-26 150.5 20.6 222 15-259 360-625 (626)
133 KOG0305 Anaphase promoting com 99.9 2.6E-22 5.6E-27 157.6 17.6 157 81-261 198-377 (484)
134 KOG2106 Uncharacterized conser 99.9 7.7E-21 1.7E-25 145.9 24.8 241 15-261 96-478 (626)
135 KOG0294 WD40 repeat-containing 99.9 1.2E-21 2.5E-26 142.1 18.6 159 2-196 60-283 (362)
136 KOG1188 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 145.1 16.4 233 3-259 48-345 (376)
137 KOG0650 WD40 repeat nucleolar 99.9 6.2E-22 1.3E-26 154.7 17.3 223 15-258 392-733 (733)
138 KOG0322 G-protein beta subunit 99.9 2.7E-22 5.8E-27 142.1 13.6 222 13-259 4-322 (323)
139 KOG1407 WD40 repeat protein [F 99.9 6.8E-22 1.5E-26 139.9 15.5 156 81-261 43-220 (313)
140 KOG0278 Serine/threonine kinas 99.9 9.9E-23 2.1E-27 143.4 10.9 177 12-199 90-302 (334)
141 KOG0293 WD40 repeat-containing 99.9 2E-22 4.4E-27 150.9 13.0 172 2-173 243-514 (519)
142 KOG1408 WD40 repeat protein [F 99.9 2.4E-21 5.1E-26 154.6 19.8 156 104-261 328-627 (1080)
143 KOG1445 Tumor-specific antigen 99.9 3.8E-22 8.3E-27 157.2 15.1 128 15-142 71-213 (1012)
144 KOG2919 Guanine nucleotide-bin 99.9 4.2E-21 9.2E-26 139.8 18.1 145 81-247 180-359 (406)
145 KOG0270 WD40 repeat-containing 99.9 1.7E-21 3.7E-26 147.0 16.6 184 21-261 241-450 (463)
146 KOG1063 RNA polymerase II elon 99.9 4.3E-21 9.3E-26 152.2 19.3 145 94-260 519-699 (764)
147 KOG1009 Chromatin assembly com 99.9 1.5E-21 3.3E-26 145.8 15.6 139 15-172 57-195 (434)
148 KOG1274 WD40 repeat protein [G 99.9 1.3E-20 2.7E-25 153.8 21.4 218 2-247 32-289 (933)
149 KOG1063 RNA polymerase II elon 99.9 3.6E-21 7.9E-26 152.6 17.0 206 13-260 515-763 (764)
150 KOG0283 WD40 repeat-containing 99.9 3.3E-21 7.1E-26 155.8 16.8 171 13-194 359-576 (712)
151 KOG0302 Ribosome Assembly prot 99.9 8.9E-21 1.9E-25 140.6 17.0 158 11-173 199-379 (440)
152 KOG2096 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 136.6 16.5 160 94-260 80-308 (420)
153 KOG0307 Vesicle coat complex C 99.9 2.3E-21 5E-26 161.4 13.2 200 3-261 88-328 (1049)
154 KOG0290 Conserved WD40 repeat- 99.9 1.3E-20 2.9E-25 135.4 14.5 189 21-261 94-319 (364)
155 KOG1538 Uncharacterized conser 99.9 7.5E-20 1.6E-24 145.3 18.9 229 3-259 31-292 (1081)
156 KOG1539 WD repeat protein [Gen 99.9 1.3E-19 2.8E-24 146.7 20.4 177 23-259 448-647 (910)
157 KOG4378 Nuclear protein COP1 [ 99.9 2E-19 4.3E-24 138.1 19.5 230 7-261 16-281 (673)
158 KOG1310 WD40 repeat protein [G 99.9 2.5E-20 5.3E-25 144.7 14.5 211 12-261 39-304 (758)
159 KOG0321 WD40 repeat-containing 99.9 3.4E-20 7.3E-25 146.0 15.0 196 21-261 45-302 (720)
160 KOG0649 WD40 repeat protein [G 99.8 9.6E-19 2.1E-23 123.0 20.3 209 24-260 11-274 (325)
161 KOG0644 Uncharacterized conser 99.8 1.5E-21 3.2E-26 157.9 6.5 210 11-261 178-427 (1113)
162 KOG0307 Vesicle coat complex C 99.8 1.2E-20 2.5E-25 157.3 11.2 207 1-261 35-285 (1049)
163 KOG4378 Nuclear protein COP1 [ 99.8 2.7E-19 5.9E-24 137.4 16.9 179 5-240 101-305 (673)
164 KOG0771 Prolactin regulatory e 99.8 2E-19 4.3E-24 135.2 15.4 175 27-260 148-354 (398)
165 KOG1517 Guanine nucleotide bin 99.8 4.3E-19 9.3E-24 147.2 18.3 236 7-261 1090-1382(1387)
166 KOG2048 WD40 repeat protein [G 99.8 2.4E-18 5.2E-23 136.4 21.3 166 3-170 130-317 (691)
167 KOG4227 WD40 repeat protein [G 99.8 3.2E-19 7E-24 133.5 15.2 127 17-173 50-180 (609)
168 KOG1007 WD repeat protein TSSC 99.8 5.7E-19 1.2E-23 127.0 15.3 223 13-260 112-361 (370)
169 KOG1445 Tumor-specific antigen 99.8 1.6E-19 3.4E-24 142.7 13.5 124 22-173 626-751 (1012)
170 KOG1007 WD repeat protein TSSC 99.8 1.6E-18 3.6E-23 124.7 17.0 194 15-260 55-289 (370)
171 KOG4328 WD40 protein [Function 99.8 2.9E-19 6.3E-24 135.6 13.9 152 86-259 172-398 (498)
172 KOG2110 Uncharacterized conser 99.8 6.1E-18 1.3E-22 125.4 20.2 193 24-261 47-249 (391)
173 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.9E-17 6.4E-22 126.9 22.4 165 36-261 2-188 (300)
174 KOG2445 Nuclear pore complex c 99.8 5.9E-18 1.3E-22 122.7 16.9 161 97-260 10-256 (361)
175 KOG2055 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 126.9 18.4 170 3-173 233-418 (514)
176 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 3E-21 128.5 25.4 220 18-261 60-315 (466)
177 KOG1523 Actin-related protein 99.8 2.1E-17 4.6E-22 120.5 17.2 202 17-259 4-235 (361)
178 KOG1963 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 131.9 19.6 122 20-173 202-323 (792)
179 PF08662 eIF2A: Eukaryotic tra 99.8 1.8E-16 3.9E-21 113.7 19.9 116 100-261 59-180 (194)
180 KOG1334 WD40 repeat protein [G 99.8 3.1E-18 6.8E-23 131.2 10.4 224 12-259 131-465 (559)
181 KOG1524 WD40 repeat-containing 99.8 1.6E-17 3.4E-22 129.0 14.3 187 2-191 82-283 (737)
182 KOG1240 Protein kinase contain 99.8 4.3E-17 9.4E-22 137.3 16.5 244 13-258 1038-1431(1431)
183 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-15 3.9E-20 122.0 25.7 198 4-261 133-360 (466)
184 KOG2110 Uncharacterized conser 99.8 4.7E-16 1E-20 115.6 19.7 148 23-173 87-249 (391)
185 KOG0303 Actin-binding protein 99.8 7.9E-17 1.7E-21 120.6 15.8 160 2-197 101-297 (472)
186 KOG1009 Chromatin assembly com 99.8 2.4E-17 5.1E-22 123.7 12.8 167 22-260 12-195 (434)
187 PRK11028 6-phosphogluconolacto 99.8 3E-15 6.5E-20 117.4 25.0 235 3-260 10-304 (330)
188 PRK01742 tolB translocation pr 99.7 3.5E-16 7.6E-21 126.4 20.0 190 4-259 183-400 (429)
189 KOG2321 WD40 repeat protein [G 99.7 2E-16 4.2E-21 123.9 16.8 217 15-257 44-340 (703)
190 KOG0642 Cell-cycle nuclear pro 99.7 6.2E-17 1.3E-21 126.1 14.0 177 2-204 313-571 (577)
191 KOG0649 WD40 repeat protein [G 99.7 3.5E-15 7.7E-20 105.3 21.1 181 15-202 54-281 (325)
192 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-16 4.1E-21 123.0 15.4 142 23-172 219-362 (636)
193 KOG1538 Uncharacterized conser 99.7 2.9E-16 6.4E-21 125.2 16.1 194 25-260 14-252 (1081)
194 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 117.6 11.9 126 113-261 41-197 (376)
195 KOG1524 WD40 repeat-containing 99.7 7.7E-16 1.7E-20 119.8 15.8 229 21-256 12-282 (737)
196 KOG1587 Cytoplasmic dynein int 99.7 6.8E-15 1.5E-19 119.3 21.9 225 12-261 232-517 (555)
197 KOG0771 Prolactin regulatory e 99.7 5.6E-16 1.2E-20 116.9 13.2 168 3-171 164-353 (398)
198 KOG1523 Actin-related protein 99.7 4E-15 8.6E-20 108.8 16.7 154 12-197 44-239 (361)
199 KOG2111 Uncharacterized conser 99.7 2.6E-14 5.6E-19 104.5 20.6 192 25-261 7-257 (346)
200 KOG1587 Cytoplasmic dynein int 99.7 9.3E-15 2E-19 118.5 18.7 180 81-261 223-473 (555)
201 KOG1517 Guanine nucleotide bin 99.7 2E-14 4.4E-19 120.1 20.0 218 21-261 1062-1334(1387)
202 KOG1310 WD40 repeat protein [G 99.7 5.7E-16 1.2E-20 120.8 10.4 154 92-259 42-230 (758)
203 KOG1034 Transcriptional repres 99.7 4E-15 8.6E-20 109.2 14.1 120 99-260 88-211 (385)
204 KOG1409 Uncharacterized conser 99.7 1.8E-14 3.8E-19 106.5 16.5 168 2-173 43-271 (404)
205 KOG1963 WD40 repeat protein [G 99.7 4.7E-14 1E-18 115.5 20.5 244 5-261 37-376 (792)
206 KOG1272 WD40-repeat-containing 99.7 5.4E-16 1.2E-20 118.5 8.8 174 25-261 131-324 (545)
207 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-15 3.8E-20 117.7 10.3 104 14-152 281-384 (636)
208 KOG0650 WD40 repeat nucleolar 99.6 3.2E-15 7E-20 117.7 11.6 174 18-191 516-732 (733)
209 KOG2919 Guanine nucleotide-bin 99.6 2.3E-14 5.1E-19 105.1 15.3 179 2-181 130-336 (406)
210 KOG1272 WD40-repeat-containing 99.6 1.7E-15 3.7E-20 115.8 9.7 217 9-247 157-398 (545)
211 KOG2139 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 104.0 17.5 150 23-173 98-269 (445)
212 KOG2111 Uncharacterized conser 99.6 1.4E-12 3.1E-17 95.5 23.4 165 5-173 75-257 (346)
213 KOG0322 G-protein beta subunit 99.6 1.9E-15 4.1E-20 107.8 7.9 128 13-171 195-322 (323)
214 PRK03629 tolB translocation pr 99.6 6.4E-13 1.4E-17 107.4 23.5 192 6-260 180-406 (429)
215 PRK04922 tolB translocation pr 99.6 3.6E-13 7.9E-18 109.2 21.6 194 6-260 185-411 (433)
216 PF02239 Cytochrom_D1: Cytochr 99.6 9.7E-13 2.1E-17 103.6 23.2 162 3-200 14-208 (369)
217 PRK05137 tolB translocation pr 99.6 7.5E-13 1.6E-17 107.5 22.9 194 6-260 183-412 (435)
218 KOG0290 Conserved WD40 repeat- 99.6 8.3E-14 1.8E-18 100.8 15.1 185 21-257 148-362 (364)
219 KOG3881 Uncharacterized conser 99.6 1.5E-13 3.2E-18 103.2 16.6 182 22-261 104-321 (412)
220 PF08662 eIF2A: Eukaryotic tra 99.6 6.9E-14 1.5E-18 100.4 14.4 124 22-202 58-186 (194)
221 KOG4547 WD40 repeat-containing 99.6 2.2E-13 4.7E-18 107.3 16.7 182 33-261 3-221 (541)
222 PRK02889 tolB translocation pr 99.6 9.3E-13 2E-17 106.5 21.0 183 6-247 177-389 (427)
223 PRK11028 6-phosphogluconolacto 99.6 3.9E-12 8.5E-17 99.8 23.2 162 81-261 58-259 (330)
224 PRK01742 tolB translocation pr 99.6 3.5E-13 7.5E-18 109.1 16.7 154 26-239 250-426 (429)
225 KOG1354 Serine/threonine prote 99.5 1.6E-12 3.4E-17 96.4 17.9 224 23-260 25-359 (433)
226 KOG4497 Uncharacterized conser 99.5 9.6E-14 2.1E-18 102.2 11.3 201 29-256 14-236 (447)
227 KOG4227 WD40 repeat protein [G 99.5 5.5E-13 1.2E-17 100.5 15.2 104 94-197 50-182 (609)
228 KOG3881 Uncharacterized conser 99.5 8.7E-13 1.9E-17 99.1 15.7 101 102-202 204-328 (412)
229 KOG1240 Protein kinase contain 99.5 3.8E-13 8.1E-18 114.2 15.0 150 89-260 1037-1225(1431)
230 KOG0974 WD-repeat protein WDR6 99.5 6.3E-13 1.4E-17 110.9 14.8 190 24-261 88-289 (967)
231 KOG4497 Uncharacterized conser 99.5 4.4E-12 9.6E-17 93.6 17.5 222 4-260 70-391 (447)
232 KOG2139 WD40 repeat protein [G 99.5 7.7E-11 1.7E-15 88.2 23.1 163 3-167 118-306 (445)
233 TIGR02800 propeller_TolB tol-p 99.5 2.9E-11 6.3E-16 98.1 22.6 183 6-247 171-383 (417)
234 KOG0974 WD-repeat protein WDR6 99.5 1.3E-11 2.9E-16 103.3 19.4 131 5-173 155-289 (967)
235 KOG0644 Uncharacterized conser 99.5 2.3E-14 5.1E-19 117.0 3.1 118 93-260 183-300 (1113)
236 PRK05137 tolB translocation pr 99.5 3.2E-11 7E-16 98.0 20.4 155 81-260 183-366 (435)
237 PRK03629 tolB translocation pr 99.4 4.1E-11 9E-16 97.0 19.8 158 23-238 242-427 (429)
238 PRK00178 tolB translocation pr 99.4 1.3E-10 2.9E-15 94.5 22.8 184 16-259 191-405 (430)
239 KOG4714 Nucleoporin [Nuclear s 99.4 9.6E-13 2.1E-17 94.0 8.8 157 17-173 83-255 (319)
240 KOG2315 Predicted translation 99.4 2.4E-10 5.2E-15 90.0 22.6 97 141-261 269-391 (566)
241 KOG0280 Uncharacterized conser 99.4 1.1E-11 2.3E-16 90.2 14.0 115 26-173 124-242 (339)
242 PRK04922 tolB translocation pr 99.4 3.6E-11 7.8E-16 97.6 18.8 154 81-260 185-368 (433)
243 KOG4190 Uncharacterized conser 99.4 1.8E-13 3.9E-18 107.7 5.0 159 16-204 728-916 (1034)
244 PRK02889 tolB translocation pr 99.4 4.8E-11 1E-15 96.6 18.6 154 81-261 177-361 (427)
245 PRK01029 tolB translocation pr 99.4 2.7E-10 6E-15 92.0 22.7 187 17-260 178-403 (428)
246 COG4946 Uncharacterized protei 99.4 1.4E-10 3.1E-15 89.9 19.7 118 21-173 357-478 (668)
247 KOG1064 RAVE (regulator of V-A 99.4 1.5E-12 3.3E-17 114.3 9.7 172 18-260 2203-2398(2439)
248 PF02239 Cytochrom_D1: Cytochr 99.4 2.1E-10 4.6E-15 90.5 20.5 158 81-261 17-203 (369)
249 KOG2041 WD40 repeat protein [G 99.4 4.4E-11 9.6E-16 97.0 15.2 202 23-248 14-278 (1189)
250 PRK04792 tolB translocation pr 99.4 3.7E-10 8E-15 91.9 20.8 184 17-260 211-425 (448)
251 TIGR02800 propeller_TolB tol-p 99.3 2.8E-10 6E-15 92.4 19.5 153 81-260 171-354 (417)
252 PF10282 Lactonase: Lactonase, 99.3 3.5E-09 7.6E-14 83.5 24.9 216 23-261 36-323 (345)
253 KOG1064 RAVE (regulator of V-A 99.3 1.8E-11 3.9E-16 107.9 11.1 163 2-204 2227-2408(2439)
254 KOG1409 Uncharacterized conser 99.3 1.3E-10 2.9E-15 86.4 12.8 211 13-261 14-271 (404)
255 KOG1354 Serine/threonine prote 99.2 1.9E-10 4.2E-15 85.6 11.7 206 20-257 161-431 (433)
256 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.2E-08 6.8E-13 76.9 23.8 34 227-261 297-331 (352)
257 PF00400 WD40: WD domain, G-be 99.2 3.9E-11 8.6E-16 62.5 5.2 38 14-51 2-39 (39)
258 PRK00178 tolB translocation pr 99.2 5.6E-09 1.2E-13 85.0 20.3 154 81-260 180-363 (430)
259 KOG1334 WD40 repeat protein [G 99.2 1.4E-10 3E-15 90.0 9.8 166 93-260 135-424 (559)
260 KOG3914 WD repeat protein WDR4 99.2 1E-09 2.2E-14 83.2 13.8 144 26-173 65-224 (390)
261 PRK01029 tolB translocation pr 99.2 4.2E-09 9.1E-14 85.2 18.4 100 102-201 282-410 (428)
262 PF15492 Nbas_N: Neuroblastoma 99.2 4.9E-08 1.1E-12 71.4 21.6 194 26-261 46-260 (282)
263 COG2706 3-carboxymuconate cycl 99.2 8.1E-08 1.8E-12 72.4 23.2 221 21-262 37-323 (346)
264 KOG0280 Uncharacterized conser 99.2 5.4E-09 1.2E-13 76.4 16.0 101 103-203 124-251 (339)
265 KOG1912 WD40 repeat protein [G 99.2 1.4E-08 3E-13 83.6 20.0 128 11-173 43-187 (1062)
266 COG5170 CDC55 Serine/threonine 99.2 4.5E-09 9.9E-14 77.6 15.5 179 22-205 25-321 (460)
267 COG5354 Uncharacterized protei 99.2 2.8E-08 6E-13 77.9 20.4 132 104-260 226-395 (561)
268 KOG1275 PAB-dependent poly(A) 99.2 3.5E-09 7.5E-14 88.4 16.3 154 81-260 158-342 (1118)
269 KOG0309 Conserved WD40 repeat- 99.2 2.1E-10 4.4E-15 93.5 9.0 125 15-173 106-233 (1081)
270 KOG4190 Uncharacterized conser 99.1 5.2E-10 1.1E-14 88.6 10.7 230 2-256 754-1032(1034)
271 KOG2695 WD40 repeat protein [G 99.1 2.2E-10 4.9E-15 85.3 8.2 122 81-205 235-387 (425)
272 KOG2321 WD40 repeat protein [G 99.1 1.8E-09 4E-14 85.6 13.3 158 11-194 163-343 (703)
273 PF04762 IKI3: IKI3 family; I 99.1 8.1E-08 1.8E-12 84.2 24.5 175 81-260 238-456 (928)
274 PRK04043 tolB translocation pr 99.1 1.3E-07 2.8E-12 76.3 23.8 114 25-173 189-310 (419)
275 PRK04792 tolB translocation pr 99.1 2E-08 4.3E-13 81.9 19.3 153 81-259 199-379 (448)
276 KOG0882 Cyclophilin-related pe 99.1 1.6E-09 3.4E-14 83.6 11.8 204 2-206 27-317 (558)
277 KOG3617 WD40 and TPR repeat-co 99.1 4.2E-09 9.1E-14 87.5 14.7 109 27-172 19-131 (1416)
278 PF00400 WD40: WD domain, G-be 99.1 7.3E-10 1.6E-14 57.6 6.2 39 132-170 1-39 (39)
279 KOG4547 WD40 repeat-containing 99.1 1.5E-08 3.2E-13 80.6 15.6 132 5-173 80-221 (541)
280 PLN02919 haloacid dehalogenase 99.1 1.9E-07 4.2E-12 83.3 24.3 146 104-261 686-889 (1057)
281 KOG1645 RING-finger-containing 99.0 8.8E-09 1.9E-13 78.4 12.4 91 82-173 175-267 (463)
282 KOG4532 WD40-like repeat conta 99.0 2.1E-07 4.4E-12 67.6 18.7 199 34-247 83-321 (344)
283 PF08450 SGL: SMP-30/Gluconola 99.0 3.6E-07 7.8E-12 68.7 21.1 194 28-246 4-243 (246)
284 KOG0309 Conserved WD40 repeat- 99.0 1.8E-09 3.9E-14 88.2 8.1 179 23-261 24-233 (1081)
285 COG2706 3-carboxymuconate cycl 99.0 3.1E-07 6.8E-12 69.3 18.7 144 98-261 37-222 (346)
286 TIGR03300 assembly_YfgL outer 98.9 6.9E-07 1.5E-11 71.6 21.1 167 34-202 104-305 (377)
287 KOG2695 WD40 repeat protein [G 98.9 6.1E-09 1.3E-13 77.8 8.1 122 116-261 228-377 (425)
288 TIGR03300 assembly_YfgL outer 98.9 6.7E-07 1.5E-11 71.7 20.3 166 35-204 145-348 (377)
289 KOG2315 Predicted translation 98.9 5.4E-07 1.2E-11 71.7 18.8 175 21-200 163-395 (566)
290 PF04762 IKI3: IKI3 family; I 98.9 8.5E-07 1.8E-11 78.0 21.4 184 23-261 75-334 (928)
291 KOG2314 Translation initiation 98.9 7.3E-07 1.6E-11 71.1 18.5 130 27-158 214-362 (698)
292 KOG1832 HIV-1 Vpr-binding prot 98.9 3.2E-09 7E-14 88.6 5.6 126 9-173 1087-1215(1516)
293 KOG3914 WD repeat protein WDR4 98.9 1.9E-08 4.1E-13 76.5 9.2 99 104-203 111-232 (390)
294 KOG4532 WD40-like repeat conta 98.9 4.4E-07 9.4E-12 66.0 15.1 118 26-176 161-286 (344)
295 PF10282 Lactonase: Lactonase, 98.8 2.9E-06 6.2E-11 67.1 20.7 138 101-260 37-222 (345)
296 COG4946 Uncharacterized protei 98.8 2.1E-06 4.5E-11 67.4 18.7 104 98-202 357-485 (668)
297 TIGR02658 TTQ_MADH_Hv methylam 98.8 5.1E-06 1.1E-10 64.8 20.6 106 81-188 28-161 (352)
298 KOG2066 Vacuolar assembly/sort 98.8 7E-07 1.5E-11 74.1 15.5 134 24-205 40-198 (846)
299 PF13360 PQQ_2: PQQ-like domai 98.7 8E-06 1.7E-10 61.0 19.5 123 81-206 4-152 (238)
300 KOG4714 Nucleoporin [Nuclear s 98.7 7.1E-08 1.5E-12 69.6 7.8 127 23-192 179-316 (319)
301 COG5354 Uncharacterized protei 98.7 3.4E-06 7.5E-11 66.6 17.6 208 15-261 24-307 (561)
302 PLN02919 haloacid dehalogenase 98.7 1.2E-05 2.6E-10 72.2 23.4 156 102-261 625-834 (1057)
303 COG5170 CDC55 Serine/threonine 98.7 3E-07 6.5E-12 68.2 10.8 75 99-173 25-118 (460)
304 KOG1912 WD40 repeat protein [G 98.7 1.5E-06 3.1E-11 72.2 15.5 139 82-238 37-187 (1062)
305 PF13360 PQQ_2: PQQ-like domai 98.6 1.5E-05 3.2E-10 59.6 18.6 166 33-201 34-237 (238)
306 KOG1832 HIV-1 Vpr-binding prot 98.6 5.4E-08 1.2E-12 81.5 5.2 110 93-202 1094-1222(1516)
307 KOG0882 Cyclophilin-related pe 98.6 4.6E-07 1E-11 70.4 9.5 192 21-261 7-232 (558)
308 KOG3621 WD40 repeat-containing 98.6 1.1E-05 2.5E-10 66.2 17.6 117 22-173 32-155 (726)
309 PF11768 DUF3312: Protein of u 98.6 3.3E-07 7.1E-12 73.6 8.8 74 98-173 257-330 (545)
310 PRK04043 tolB translocation pr 98.6 3.8E-05 8.1E-10 62.2 20.6 120 102-247 189-337 (419)
311 PF07433 DUF1513: Protein of u 98.6 0.00015 3.2E-09 55.1 22.6 177 28-204 9-257 (305)
312 KOG1008 Uncharacterized conser 98.6 4.7E-08 1E-12 78.9 3.3 185 23-260 56-275 (783)
313 KOG2041 WD40 repeat protein [G 98.6 6.9E-07 1.5E-11 73.5 9.8 137 99-261 13-187 (1189)
314 PF08596 Lgl_C: Lethal giant l 98.5 3.9E-05 8.5E-10 61.3 19.3 139 25-172 3-173 (395)
315 KOG2066 Vacuolar assembly/sort 98.5 2.9E-05 6.2E-10 64.9 18.5 120 34-194 82-233 (846)
316 PRK11138 outer membrane biogen 98.5 8.2E-05 1.8E-09 60.1 20.1 118 112-259 256-393 (394)
317 KOG1920 IkappaB kinase complex 98.5 4.6E-05 1E-09 66.5 19.1 181 24-261 69-323 (1265)
318 KOG1275 PAB-dependent poly(A) 98.5 1.1E-06 2.4E-11 74.0 8.7 136 8-172 202-342 (1118)
319 PF06977 SdiA-regulated: SdiA- 98.4 0.00035 7.6E-09 52.1 22.6 188 17-257 15-247 (248)
320 PF07433 DUF1513: Protein of u 98.4 0.00038 8.2E-09 52.9 20.1 81 81-161 29-117 (305)
321 KOG2114 Vacuolar assembly/sort 98.4 4.4E-05 9.5E-10 64.3 16.0 169 30-260 30-243 (933)
322 PF04053 Coatomer_WDAD: Coatom 98.3 7.2E-05 1.6E-09 60.6 16.3 127 99-260 31-173 (443)
323 PF11768 DUF3312: Protein of u 98.3 2.9E-06 6.2E-11 68.4 8.2 74 21-131 257-330 (545)
324 KOG2114 Vacuolar assembly/sort 98.3 0.0002 4.4E-09 60.5 18.7 179 2-203 42-252 (933)
325 smart00320 WD40 WD40 repeats. 98.3 1.8E-06 4E-11 43.9 4.8 38 14-51 3-40 (40)
326 PRK11138 outer membrane biogen 98.3 0.00032 6.9E-09 56.7 19.0 168 35-202 120-320 (394)
327 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00031 6.7E-09 44.7 14.7 75 103-196 2-80 (111)
328 PRK02888 nitrous-oxide reducta 98.2 0.00029 6.3E-09 58.6 17.9 127 108-261 200-352 (635)
329 PF08553 VID27: VID27 cytoplas 98.2 6.8E-05 1.5E-09 64.3 14.1 115 119-259 501-646 (794)
330 PF04053 Coatomer_WDAD: Coatom 98.2 0.00014 2.9E-09 59.1 15.1 212 21-260 30-262 (443)
331 KOG4640 Anaphase-promoting com 98.2 1.1E-05 2.4E-10 65.5 8.7 95 22-152 19-115 (665)
332 KOG2444 WD40 repeat protein [G 98.2 4.2E-06 9.2E-11 59.7 5.7 120 115-261 33-178 (238)
333 COG3386 Gluconolactonase [Carb 98.2 0.0015 3.3E-08 50.5 19.7 102 101-204 111-252 (307)
334 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0012 2.6E-08 48.5 17.6 121 81-202 74-214 (354)
335 KOG2314 Translation initiation 98.1 3.6E-05 7.8E-10 61.8 10.4 59 102-163 212-270 (698)
336 PF15492 Nbas_N: Neuroblastoma 98.1 0.00049 1.1E-08 51.0 15.3 67 106-173 3-74 (282)
337 smart00320 WD40 WD40 repeats. 98.1 1.5E-05 3.2E-10 40.3 5.7 39 132-170 2-40 (40)
338 PF08450 SGL: SMP-30/Gluconola 98.1 0.0019 4.1E-08 48.6 21.0 154 81-260 23-213 (246)
339 KOG1920 IkappaB kinase complex 98.1 0.00022 4.9E-09 62.5 15.2 70 100-170 68-137 (1265)
340 KOG3617 WD40 and TPR repeat-co 98.1 0.0001 2.3E-09 62.4 12.7 49 82-130 83-131 (1416)
341 KOG3621 WD40 repeat-containing 98.1 5.6E-05 1.2E-09 62.3 10.9 118 100-260 33-154 (726)
342 PRK02888 nitrous-oxide reducta 98.0 0.00053 1.2E-08 57.1 15.5 82 111-195 287-405 (635)
343 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.001 2.2E-08 42.4 13.8 100 26-167 2-109 (111)
344 KOG2395 Protein involved in va 98.0 0.00017 3.7E-09 57.9 11.8 124 110-259 343-499 (644)
345 KOG4640 Anaphase-promoting com 98.0 4E-05 8.7E-10 62.4 8.4 92 100-192 20-114 (665)
346 KOG1008 Uncharacterized conser 98.0 4.3E-06 9.3E-11 68.0 2.5 120 17-170 96-223 (783)
347 KOG1645 RING-finger-containing 97.9 3.4E-05 7.3E-10 59.5 6.4 85 12-132 182-268 (463)
348 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0093 2E-07 48.4 19.6 47 82-130 63-109 (410)
349 PF06433 Me-amine-dh_H: Methyl 97.9 0.0075 1.6E-07 46.7 18.8 206 28-261 40-321 (342)
350 PF03178 CPSF_A: CPSF A subuni 97.8 0.005 1.1E-07 48.4 17.5 155 81-261 3-203 (321)
351 PF04841 Vps16_N: Vps16, N-ter 97.8 0.012 2.5E-07 47.9 20.9 101 101-204 217-324 (410)
352 COG0823 TolB Periplasmic compo 97.8 0.002 4.3E-08 52.3 15.0 118 81-200 219-364 (425)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.011 2.5E-07 47.5 18.5 189 13-247 76-325 (395)
354 KOG2444 WD40 repeat protein [G 97.7 0.00017 3.7E-09 51.7 7.1 32 111-142 113-144 (238)
355 PF08553 VID27: VID27 cytoplas 97.7 0.0058 1.3E-07 52.9 17.2 89 81-171 553-646 (794)
356 COG0823 TolB Periplasmic compo 97.7 0.0033 7.1E-08 51.0 15.1 141 82-247 175-344 (425)
357 KOG2079 Vacuolar assembly/sort 97.7 0.0032 6.9E-08 55.1 15.2 67 99-165 129-198 (1206)
358 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0061 1.3E-07 48.6 16.2 88 81-170 24-129 (353)
359 PRK13616 lipoprotein LpqB; Pro 97.7 0.01 2.2E-07 50.4 18.1 56 103-161 399-466 (591)
360 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0084 1.8E-07 44.3 14.3 90 112-203 23-132 (354)
361 cd00216 PQQ_DH Dehydrogenases 97.6 0.032 6.9E-07 46.6 20.4 169 36-204 111-384 (488)
362 PF06977 SdiA-regulated: SdiA- 97.5 0.013 2.9E-07 43.8 15.0 78 95-173 16-95 (248)
363 COG3391 Uncharacterized conser 97.5 0.035 7.5E-07 44.8 21.5 91 81-173 97-191 (381)
364 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00045 9.8E-09 36.8 4.9 33 227-261 10-42 (47)
365 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00082 1.8E-08 35.8 5.6 31 23-53 11-41 (47)
366 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.027 5.9E-07 44.9 16.3 92 81-172 159-266 (353)
367 PF03178 CPSF_A: CPSF A subuni 97.4 0.031 6.8E-07 43.9 16.3 91 99-194 87-202 (321)
368 COG3490 Uncharacterized protei 97.3 0.045 9.7E-07 41.2 15.0 123 81-203 141-319 (366)
369 PF05694 SBP56: 56kDa selenium 97.2 0.032 6.9E-07 44.7 14.3 154 105-261 134-343 (461)
370 KOG4499 Ca2+-binding protein R 97.2 0.031 6.7E-07 40.8 13.0 107 27-159 161-271 (310)
371 COG3386 Gluconolactonase [Carb 97.2 0.024 5.1E-07 44.0 13.5 128 5-161 143-274 (307)
372 PF00780 CNH: CNH domain; Int 97.0 0.084 1.8E-06 40.4 15.0 61 110-173 5-65 (275)
373 PRK13616 lipoprotein LpqB; Pro 96.9 0.04 8.7E-07 46.9 13.5 115 101-256 350-472 (591)
374 KOG2395 Protein involved in va 96.9 0.07 1.5E-06 43.6 13.3 110 81-193 357-499 (644)
375 KOG1916 Nuclear protein, conta 96.9 0.0012 2.5E-08 56.7 3.7 91 104-206 184-282 (1283)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.19 4.1E-06 40.7 21.1 41 111-152 78-118 (415)
377 COG4590 ABC-type uncharacteriz 96.8 0.043 9.3E-07 44.1 11.6 139 96-261 216-387 (733)
378 PF12234 Rav1p_C: RAVE protein 96.8 0.079 1.7E-06 45.0 13.8 120 102-258 31-154 (631)
379 PHA02713 hypothetical protein; 96.7 0.12 2.5E-06 44.1 14.2 51 111-163 351-408 (557)
380 PF05096 Glu_cyclase_2: Glutam 96.6 0.18 4E-06 37.9 22.7 191 13-247 33-249 (264)
381 PF02897 Peptidase_S9_N: Proly 96.6 0.3 6.6E-06 39.9 21.6 92 81-173 151-261 (414)
382 cd00216 PQQ_DH Dehydrogenases 96.6 0.35 7.6E-06 40.6 19.9 28 113-140 111-138 (488)
383 KOG2079 Vacuolar assembly/sort 96.6 0.021 4.5E-07 50.4 9.2 62 111-172 98-160 (1206)
384 COG3490 Uncharacterized protei 96.5 0.13 2.8E-06 38.9 11.8 143 81-246 92-243 (366)
385 PF06433 Me-amine-dh_H: Methyl 96.5 0.28 6.1E-06 38.4 17.0 117 81-199 18-171 (342)
386 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.25 5.4E-06 40.2 14.3 123 111-259 36-203 (418)
387 PHA03098 kelch-like protein; P 96.5 0.4 8.7E-06 40.7 16.5 61 111-173 342-415 (534)
388 COG3204 Uncharacterized protei 96.5 0.27 5.7E-06 37.4 18.1 148 19-202 81-270 (316)
389 COG5167 VID27 Protein involved 96.4 0.13 2.7E-06 42.2 12.0 122 111-259 478-631 (776)
390 PF14727 PHTB1_N: PTHB1 N-term 96.4 0.4 8.7E-06 39.0 19.4 59 112-171 145-203 (418)
391 COG3391 Uncharacterized conser 96.4 0.41 8.9E-06 38.7 18.9 121 82-204 142-293 (381)
392 PHA02713 hypothetical protein; 96.3 0.38 8.3E-06 41.0 14.9 61 111-173 303-376 (557)
393 PF14781 BBS2_N: Ciliary BBSom 96.2 0.19 4E-06 33.5 11.8 84 105-199 3-86 (136)
394 PF02897 Peptidase_S9_N: Proly 96.1 0.55 1.2E-05 38.4 14.8 71 102-173 125-211 (414)
395 PF00780 CNH: CNH domain; Int 96.1 0.47 1E-05 36.3 20.8 173 23-204 35-265 (275)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 0.19 4.2E-06 40.7 11.4 101 98-204 305-408 (415)
397 PF10313 DUF2415: Uncharacteri 96.0 0.036 7.8E-07 28.7 4.8 31 143-173 1-34 (43)
398 KOG4441 Proteins containing BT 96.0 0.54 1.2E-05 40.2 14.4 86 111-197 380-502 (571)
399 PF14870 PSII_BNR: Photosynthe 95.9 0.57 1.2E-05 36.4 17.0 134 99-257 143-301 (302)
400 PF10647 Gmad1: Lipoprotein Lp 95.9 0.51 1.1E-05 35.7 17.6 60 102-161 67-130 (253)
401 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 0.9 2E-05 38.5 17.3 55 81-135 272-338 (527)
402 KOG1897 Damage-specific DNA bi 95.9 1.2 2.5E-05 39.8 18.4 90 81-173 808-899 (1096)
403 KOG4499 Ca2+-binding protein R 95.9 0.47 1E-05 34.9 11.9 103 100-204 108-251 (310)
404 PF14583 Pectate_lyase22: Olig 95.9 0.71 1.5E-05 36.9 18.7 130 30-160 42-206 (386)
405 PF08801 Nucleoporin_N: Nup133 95.8 0.87 1.9E-05 37.4 14.7 31 228-260 189-219 (422)
406 PF07569 Hira: TUP1-like enhan 95.8 0.079 1.7E-06 39.1 7.7 74 176-260 22-95 (219)
407 PF08728 CRT10: CRT10; InterP 95.8 1.2 2.6E-05 38.7 16.1 92 101-193 101-245 (717)
408 PRK10115 protease 2; Provision 95.8 1.3 2.8E-05 39.0 26.8 117 25-173 128-256 (686)
409 KOG2247 WD40 repeat-containing 95.7 0.0044 9.6E-08 49.8 1.2 118 105-246 39-177 (615)
410 PF05694 SBP56: 56kDa selenium 95.7 0.79 1.7E-05 37.2 13.2 100 81-180 223-350 (461)
411 PF15390 DUF4613: Domain of un 95.6 0.31 6.8E-06 40.7 11.2 120 22-172 55-186 (671)
412 PF10313 DUF2415: Uncharacteri 95.6 0.083 1.8E-06 27.4 5.2 32 101-132 1-35 (43)
413 PF14761 HPS3_N: Hermansky-Pud 95.6 0.56 1.2E-05 34.1 12.7 50 113-163 29-80 (215)
414 PF10168 Nup88: Nuclear pore c 95.6 0.55 1.2E-05 41.1 13.3 33 227-261 145-180 (717)
415 PHA02790 Kelch-like protein; P 95.4 1.4 3E-05 37.0 15.0 61 111-173 318-385 (480)
416 PF07569 Hira: TUP1-like enhan 95.4 0.24 5.1E-06 36.6 9.0 64 108-172 18-95 (219)
417 KOG4441 Proteins containing BT 95.3 0.99 2.1E-05 38.7 13.6 90 105-197 327-455 (571)
418 PF14870 PSII_BNR: Photosynthe 95.3 1 2.3E-05 35.0 16.0 104 22-163 143-253 (302)
419 TIGR03074 PQQ_membr_DH membran 95.3 2 4.4E-05 38.1 17.1 28 111-138 259-286 (764)
420 PF12234 Rav1p_C: RAVE protein 95.2 1.8 3.8E-05 37.3 14.6 90 81-172 52-156 (631)
421 PF07250 Glyoxal_oxid_N: Glyox 95.2 0.92 2E-05 34.0 13.9 122 81-205 47-208 (243)
422 KOG1916 Nuclear protein, conta 95.2 0.046 1E-06 47.6 5.3 102 4-135 204-328 (1283)
423 KOG4460 Nuclear pore complex, 95.0 0.37 8.1E-06 39.7 9.6 84 174-261 113-199 (741)
424 TIGR02604 Piru_Ver_Nterm putat 95.0 1.5 3.3E-05 35.3 17.1 59 101-161 72-142 (367)
425 TIGR03118 PEPCTERM_chp_1 conse 95.0 1.2 2.7E-05 34.2 18.9 30 24-53 23-52 (336)
426 PF15390 DUF4613: Domain of un 94.9 2.1 4.5E-05 36.1 14.4 147 101-260 20-186 (671)
427 KOG3630 Nuclear pore complex, 94.8 0.33 7.1E-06 43.7 9.5 135 24-159 101-260 (1405)
428 KOG3630 Nuclear pore complex, 94.8 0.83 1.8E-05 41.4 11.8 127 101-246 101-261 (1405)
429 PF14269 Arylsulfotran_2: Aryl 94.8 1.5 3.3E-05 34.1 20.5 92 102-195 145-241 (299)
430 PHA03098 kelch-like protein; P 94.7 1.5 3.2E-05 37.4 13.3 61 111-173 389-465 (534)
431 PF14583 Pectate_lyase22: Olig 94.7 1.8 3.9E-05 34.7 14.1 88 86-173 16-111 (386)
432 PF05096 Glu_cyclase_2: Glutam 94.6 1.5 3.3E-05 33.2 13.5 103 101-204 45-167 (264)
433 TIGR03074 PQQ_membr_DH membran 94.0 4.2 9.1E-05 36.2 15.4 94 111-204 193-354 (764)
434 PF11715 Nup160: Nucleoporin N 93.9 0.61 1.3E-05 39.8 9.3 38 101-138 215-256 (547)
435 PF10168 Nup88: Nuclear pore c 93.9 4.4 9.5E-05 35.8 16.5 79 101-179 85-186 (717)
436 COG3204 Uncharacterized protei 93.7 2.5 5.4E-05 32.4 14.7 76 98-173 83-159 (316)
437 KOG1900 Nuclear pore complex, 93.6 1 2.2E-05 41.3 10.2 33 227-261 241-273 (1311)
438 COG3823 Glutamine cyclotransfe 93.4 2.2 4.9E-05 31.0 11.5 153 81-246 69-247 (262)
439 KOG2377 Uncharacterized conser 93.2 1.2 2.5E-05 36.3 9.1 106 22-160 65-171 (657)
440 PF08728 CRT10: CRT10; InterP 93.2 5.5 0.00012 34.9 13.5 31 227-259 209-245 (717)
441 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.61 1.3E-05 23.7 6.0 40 110-150 1-41 (42)
442 PF12768 Rax2: Cortical protei 93.0 3.1 6.6E-05 32.1 10.8 77 81-158 17-105 (281)
443 COG5276 Uncharacterized conser 92.9 3.4 7.4E-05 31.8 14.8 93 101-197 87-202 (370)
444 PF11715 Nup160: Nucleoporin N 92.9 1.5 3.3E-05 37.4 10.1 31 175-205 229-259 (547)
445 PF12657 TFIIIC_delta: Transcr 92.8 2.1 4.7E-05 30.2 9.3 31 101-131 86-122 (173)
446 KOG2280 Vacuolar assembly/sort 92.6 5.2 0.00011 34.9 12.3 47 7-54 66-113 (829)
447 KOG3616 Selective LIM binding 92.4 2.8 6.1E-05 36.6 10.6 33 23-55 14-46 (1636)
448 PHA02790 Kelch-like protein; P 92.3 6.1 0.00013 33.2 15.2 58 111-173 362-424 (480)
449 KOG1900 Nuclear pore complex, 92.2 6.8 0.00015 36.5 13.2 71 100-173 178-273 (1311)
450 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.1 6.8 0.00015 33.4 19.9 59 81-139 131-198 (527)
451 KOG2247 WD40 repeat-containing 92.1 0.052 1.1E-06 44.0 0.5 142 22-164 33-180 (615)
452 TIGR02604 Piru_Ver_Nterm putat 91.7 5.8 0.00013 32.0 11.6 60 101-161 124-202 (367)
453 COG5167 VID27 Protein involved 91.7 5.1 0.00011 33.4 10.9 109 82-194 492-632 (776)
454 PF03088 Str_synth: Strictosid 91.1 2.4 5.2E-05 26.2 7.2 43 118-161 33-75 (89)
455 PF11635 Med16: Mediator compl 91.0 8.3 0.00018 34.5 12.7 76 175-255 270-345 (753)
456 TIGR02276 beta_rpt_yvtn 40-res 90.9 1.2 2.7E-05 22.5 5.8 31 174-204 1-32 (42)
457 smart00564 PQQ beta-propeller 90.8 0.81 1.8E-05 21.8 3.9 27 112-138 6-32 (33)
458 PF12657 TFIIIC_delta: Transcr 90.6 3.2 7E-05 29.4 8.2 24 103-128 7-30 (173)
459 PF07995 GSDH: Glucose / Sorbo 90.3 7.8 0.00017 30.8 23.2 26 25-51 3-28 (331)
460 smart00564 PQQ beta-propeller 90.2 0.95 2E-05 21.6 3.8 24 178-201 8-31 (33)
461 PF07250 Glyoxal_oxid_N: Glyox 90.1 6.6 0.00014 29.5 10.1 68 125-192 49-146 (243)
462 PF01011 PQQ: PQQ enzyme repea 89.9 1.4 3E-05 22.0 4.4 27 114-140 2-28 (38)
463 PF14781 BBS2_N: Ciliary BBSom 89.8 4.4 9.6E-05 27.1 11.3 108 28-138 3-133 (136)
464 PRK10115 protease 2; Provision 89.4 15 0.00032 32.6 16.0 72 101-174 127-209 (686)
465 PF07676 PD40: WD40-like Beta 89.4 1.7 3.7E-05 21.7 5.3 30 227-257 7-38 (39)
466 PF01731 Arylesterase: Arylest 89.1 2.7 5.8E-05 25.8 5.9 33 229-262 54-86 (86)
467 PF01011 PQQ: PQQ enzyme repea 89.0 1.8 3.9E-05 21.6 4.6 27 178-204 2-28 (38)
468 TIGR03118 PEPCTERM_chp_1 conse 88.9 9.5 0.0002 29.7 14.2 83 102-194 24-118 (336)
469 PRK13684 Ycf48-like protein; P 88.1 12 0.00025 29.8 17.6 58 100-158 214-275 (334)
470 KOG1897 Damage-specific DNA bi 87.9 21 0.00046 32.5 22.4 110 81-194 471-613 (1096)
471 KOG3616 Selective LIM binding 87.8 12 0.00025 33.1 10.5 70 100-172 14-83 (1636)
472 KOG2280 Vacuolar assembly/sort 87.7 19 0.00041 31.7 14.5 48 81-130 65-112 (829)
473 PF02333 Phytase: Phytase; In 87.5 14 0.0003 30.0 14.8 60 110-172 66-135 (381)
474 PF14761 HPS3_N: Hermansky-Pud 87.2 3.5 7.6E-05 30.1 6.4 46 179-247 31-78 (215)
475 PF10214 Rrn6: RNA polymerase 87.1 22 0.00049 32.0 14.2 127 100-262 79-234 (765)
476 PF03088 Str_synth: Strictosid 86.7 4.7 0.0001 24.9 6.0 43 182-247 33-75 (89)
477 PF10647 Gmad1: Lipoprotein Lp 86.3 13 0.00027 28.3 13.8 28 230-257 113-141 (253)
478 PRK13684 Ycf48-like protein; P 85.9 16 0.00035 29.1 13.2 58 101-160 173-232 (334)
479 KOG4460 Nuclear pore complex, 84.3 24 0.00053 29.8 10.9 73 101-173 104-199 (741)
480 COG3823 Glutamine cyclotransfe 83.8 15 0.00032 27.0 8.0 92 111-202 55-166 (262)
481 KOG2109 WD40 repeat protein [G 83.8 7.5 0.00016 33.5 7.5 84 82-165 297-391 (788)
482 KOG1983 Tomosyn and related SN 82.3 43 0.00094 31.3 12.6 33 23-55 35-67 (993)
483 PF07995 GSDH: Glucose / Sorbo 82.0 24 0.00052 28.1 14.5 50 102-153 3-59 (331)
484 PF02333 Phytase: Phytase; In 81.9 26 0.00056 28.4 16.5 140 33-173 66-238 (381)
485 smart00036 CNH Domain found in 81.9 12 0.00025 29.4 7.8 58 177-260 14-73 (302)
486 PF05935 Arylsulfotrans: Aryls 81.1 32 0.0007 29.0 14.3 81 120-204 126-241 (477)
487 COG4880 Secreted protein conta 80.4 31 0.00067 28.4 13.8 75 99-173 426-504 (603)
488 PF01436 NHL: NHL repeat; Int 79.6 4.8 0.0001 18.5 4.2 25 231-257 4-28 (28)
489 TIGR03606 non_repeat_PQQ dehyd 79.4 36 0.00078 28.5 14.3 55 100-154 29-90 (454)
490 PF10395 Utp8: Utp8 family; I 79.1 44 0.00096 29.4 13.9 31 100-130 129-159 (670)
491 COG5290 IkappaB kinase complex 79.0 48 0.001 29.8 11.7 29 142-170 112-140 (1243)
492 PF10433 MMS1_N: Mono-function 78.4 41 0.00089 28.6 11.2 31 24-54 44-74 (504)
493 PF12341 DUF3639: Protein of u 78.3 5.4 0.00012 18.4 3.4 25 102-128 3-27 (27)
494 PF13570 PQQ_3: PQQ-like domai 77.8 7.2 0.00016 19.6 5.2 19 154-172 21-39 (40)
495 PF03022 MRJP: Major royal jel 77.6 31 0.00068 26.8 19.1 57 81-137 35-103 (287)
496 PF13449 Phytase-like: Esteras 76.4 37 0.00079 27.0 11.2 89 143-246 20-164 (326)
497 TIGR03606 non_repeat_PQQ dehyd 75.8 46 0.001 27.9 13.9 32 22-53 28-59 (454)
498 PF14779 BBS1: Ciliary BBSome 75.0 24 0.00053 26.8 7.3 54 115-168 198-254 (257)
499 COG5290 IkappaB kinase complex 74.7 65 0.0014 29.0 13.3 31 22-52 111-141 (1243)
500 PF01731 Arylesterase: Arylest 74.3 17 0.00038 22.3 6.7 49 121-172 35-84 (86)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-44 Score=266.93 Aligned_cols=225 Identities=32% Similarity=0.575 Sum_probs=204.7
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|.+|..+.|. ....+++|.+|...|.++.|+|. +..+||++.||++++|++++ ..++..+.+|...|.
T Consensus 194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--------e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--------ETPLQDLEGHLARVS 265 (459)
T ss_pred ecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------Ccchhhhhcchhhhe
Confidence 4567777775 56789999999999999999997 56899999999999997654 355666666666555
Q ss_pred cce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146 78 DLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 78 ~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (262)
.++ +-++||++++..+....+|...|.+++|+|||.++++|+.|..-+|||+++++++..+.+|.
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence 444 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------C-CccEEEEEcCCCeEEEEecCCCceeeE
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------P-NGKFILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
.+|.+++|+|+|.+|++|+.|+++++||++. | .|.+|++++.|++++||..++..+++.
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence 9999999999999999999999999999987 4 788999999999999999999999999
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
+.+ |++.|.++..+|++..++|++ .|.++++|.
T Consensus 426 LaG----------------------He~kV~s~Dis~d~~~i~t~s--~DRT~KLW~ 458 (459)
T KOG0272|consen 426 LAG----------------------HEGKVISLDISPDSQAIATSS--FDRTIKLWR 458 (459)
T ss_pred hcC----------------------CccceEEEEeccCCceEEEec--cCceeeecc
Confidence 998 999999999999999999999 899999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=249.99 Aligned_cols=229 Identities=27% Similarity=0.478 Sum_probs=199.0
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD- 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 78 (262)
|-|.+++.|+ +.++.++.++|..-|.|++|+|||+.||+|+.||+|++||..+.... ...+.+|...+.+
T Consensus 134 sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-------g~~l~gH~K~It~L 206 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-------GRALRGHKKWITAL 206 (480)
T ss_pred CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-------cccccCcccceeEE
Confidence 4578888887 45689999999999999999999999999999999999986654322 1223333333333
Q ss_pred -------------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee
Q 042146 79 -------------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP 139 (262)
Q Consensus 79 -------------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 139 (262)
.+.++|||+..+.++..+.+|..+|+|++|-- ..++++|+.|++|++|+...|++.++++
T Consensus 207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred eecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhc
Confidence 33899999999999999999999999999963 3589999999999999999999999999
Q ss_pred cCCCCeeeEEEc-----------cCCC-------------------------EEEEEeCCCeEEEEeCCC----------
Q 042146 140 AHSDPVTAIDFN-----------RDGT-------------------------MIVTSSYDGLYRILDAST---------- 173 (262)
Q Consensus 140 ~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~dg~i~~~d~~~---------- 173 (262)
+|...|+.++.+ |.++ .|++|+.|.++.+|+...
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 999999999887 3233 499999999999999654
Q ss_pred -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146 174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242 (262)
Q Consensus 174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 242 (262)
||++++++++-|..|++||-++|+.+.+|++ |-++|..++|+.|.++
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG----------------------Hv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG----------------------HVAAVYQVAWSADSRL 423 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh----------------------ccceeEEEEeccCccE
Confidence 9999999999999999999999999999998 8899999999999999
Q ss_pred EEEeeecCCCcEEEEeeccC
Q 042146 243 IASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 243 l~~~~~d~d~~i~iw~~~~~ 262 (262)
|++|+ .|.++++|++..+
T Consensus 424 lVS~S--kDsTLKvw~V~tk 441 (480)
T KOG0271|consen 424 LVSGS--KDSTLKVWDVRTK 441 (480)
T ss_pred EEEcC--CCceEEEEEeeee
Confidence 99999 9999999999753
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.3e-39 Score=228.94 Aligned_cols=231 Identities=23% Similarity=0.457 Sum_probs=204.3
Q ss_pred CCCCceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
|.||.+-+|+.++ .++.+.-....|..++|+|.|+++|.|+-|+...||++..... .........+.+|...+.+.
T Consensus 74 SqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~--~g~~~v~r~l~gHtgylScC 151 (343)
T KOG0286|consen 74 SQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA--EGNVRVSRELAGHTGYLSCC 151 (343)
T ss_pred ccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc--cccceeeeeecCccceeEEE
Confidence 6799999998665 5666777788999999999999999999999999999874211 11112234466666655443
Q ss_pred e--------------eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146 80 A--------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144 (262)
Q Consensus 80 ~--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (262)
. +..+||+++++.+..+.+|.+.|.++.+.| +++.+++|+-|+..++||+|.+.+++.|.+|.+.
T Consensus 152 ~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 152 RFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred EEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence 3 899999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred eeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 145 VTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
|++++|.|+|.-|++|+.|++.++||+|. ..|++|++|..|..+.+||.-.++.+..+
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 99999999999999999999999999997 57899999999999999999999999988
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
.+ |+.+|+++..+|||..++|||| |.++|||.
T Consensus 312 ~G----------------------HeNRvScl~~s~DG~av~TgSW--Ds~lriW~ 343 (343)
T KOG0286|consen 312 AG----------------------HENRVSCLGVSPDGMAVATGSW--DSTLRIWA 343 (343)
T ss_pred ec----------------------cCCeeEEEEECCCCcEEEecch--hHheeecC
Confidence 87 9999999999999999999995 58999994
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-40 Score=240.78 Aligned_cols=225 Identities=24% Similarity=0.497 Sum_probs=199.7
Q ss_pred CCCCceeeeccc---ccceecccCcCceEEEEEcc-----CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146 2 SSDRSLESFRPY---TLTQTLNGHLRAVSYVKFSH-----DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73 (262)
Q Consensus 2 s~d~~i~~~~~~---~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 73 (262)
+-||+|..|+|- +.-..|.+|.+.|++++|.| ..++||+++.||.++|||+. ....+..+.+|.
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~--------~~~~~~~lsgHT 247 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--------LGTCVRTLSGHT 247 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc--------CceEEEEeccCc
Confidence 358999999843 46778999999999999976 57799999999999999664 345556677777
Q ss_pred cccccce--------------eEEEEecCCCccceecccCCcceEEEEEe-----------CCCC---------------
Q 042146 74 QGISDLA--------------TIRLWDVPTATSLKTLIGHTNYVFCINFN-----------PQSN--------------- 113 (262)
Q Consensus 74 ~~v~~~~--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~--------------- 113 (262)
.+|+++. +|++|+...|....++++|...|+.|+++ |.++
T Consensus 248 ~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 248 ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred cceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 7776665 99999999999999999999999999877 3233
Q ss_pred ----------EEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------
Q 042146 114 ----------RIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------- 173 (262)
Q Consensus 114 ----------~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------- 173 (262)
.+++|+.|+++.+|+... .+++..+.+|..-|+.+.||||++++++++.|..|++||.++
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 499999999999999864 457888999999999999999999999999999999999887
Q ss_pred -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146 174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242 (262)
Q Consensus 174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 242 (262)
.|.++|++|+.|.++++|++++.++...+++ |.+.|.++.|+|||..
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG----------------------h~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG----------------------HADEVFAVDWSPDGQR 465 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC----------------------CCceEEEEEecCCCce
Confidence 6889999999999999999999999999988 9999999999999999
Q ss_pred EEEeeecCCCcEEEEe
Q 042146 243 IASGALDNDRTMKIWT 258 (262)
Q Consensus 243 l~~~~~d~d~~i~iw~ 258 (262)
+++|+ .|..+++|.
T Consensus 466 V~sgg--kdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGG--KDKVLRLWR 479 (480)
T ss_pred eecCC--CceEEEeec
Confidence 99999 999999996
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-40 Score=244.01 Aligned_cols=208 Identities=31% Similarity=0.530 Sum_probs=188.1
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc-----------------cceeEE
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-----------------DLATIR 83 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------~~~~i~ 83 (262)
+-+.||..+.|+++++.|+|||.+|.+++|+.+.. .....+.+|...+. ..+.++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 56789999999999999999999999999976543 33444444443322 233899
Q ss_pred EEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
+|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||+++++.+....+|..+|.+++|+|||.++++|+.|
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee
Q 042146 164 GLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY 223 (262)
Q Consensus 164 g~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (262)
..-++||+|+ |+|..|++|+.|++++|||++..+++.++++
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA------------------- 385 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA------------------- 385 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-------------------
Confidence 9999999998 9999999999999999999999999988888
Q ss_pred EEccccceEEEEEcC-CCCeEEEeeecCCCcEEEEeec
Q 042146 224 IVSHRDPVISVASHP-AKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 224 ~~~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|..-|+.+.|+| .|.+|+|+| .|++++||...
T Consensus 386 ---H~nlVS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~ 418 (459)
T KOG0272|consen 386 ---HSNLVSQVKYSPQEGYFLVTAS--YDNTVKIWSTR 418 (459)
T ss_pred ---ccchhhheEecccCCeEEEEcc--cCcceeeecCC
Confidence 888999999999 789999999 99999999764
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-37 Score=217.89 Aligned_cols=219 Identities=28% Similarity=0.516 Sum_probs=190.3
Q ss_pred cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----------- 80 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------- 80 (262)
..+..++++|++.|+.++..+. ...+++++.|.++.+|++... +...+.+...+.+|...+..+.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d---d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD---DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC---ccccCceeeeeeccceEecceEEccCCceEEec
Confidence 3456789999999999999887 568899999999999999764 3444556677778776665443
Q ss_pred ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC--CCCeeeEEEccC-
Q 042146 81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH--SDPVTAIDFNRD- 153 (262)
Q Consensus 81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~- 153 (262)
.+++||+.+++..+.+.+|...|.+++|+||.+++++|+.|.+|++|+.... +..++..+ .+-|+|+.|+|+
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999998754 44444333 788999999997
Q ss_pred -CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146 154 -GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 154 -~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
..++++++.|+++++||++. |||...++|+.||.+.+||++.++.+..+.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--------- 231 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--------- 231 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---------
Confidence 67999999999999999987 999999999999999999999999988887
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|+...|+.+. +..|+||+++.
T Consensus 232 --------------a~~~v~sl~fspnrywL~~at---~~sIkIwdl~~ 263 (315)
T KOG0279|consen 232 --------------AFDIVNSLCFSPNRYWLCAAT---ATSIKIWDLES 263 (315)
T ss_pred --------------CCCeEeeEEecCCceeEeecc---CCceEEEeccc
Confidence 888999999999999888875 56799999875
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-38 Score=252.57 Aligned_cols=189 Identities=28% Similarity=0.523 Sum_probs=178.1
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL 93 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~ 93 (262)
....++-+|.++|....|+|+.++|+++|+|+++|+|.+ .+...+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl-----------------------------------~t~s~~ 486 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-----------------------------------DTWSCL 486 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeec-----------------------------------ccceeE
Confidence 355668899999999999999999999999999988854 466777
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
..+++|..+|..+.|+|.|-++|+++.|++.++|.....++++.+.+|.+.|.|+.|+|+..++++|+.|.++++||..+
T Consensus 487 V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 487 VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146 174 --------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233 (262)
Q Consensus 174 --------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 233 (262)
|+|.+|++|+.||.|.+||+.+++++..+.+ |.+.|.+
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~----------------------Ht~ti~S 624 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG----------------------HTGTIYS 624 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc----------------------ccCceeE
Confidence 8999999999999999999999999999998 8899999
Q ss_pred EEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 234 VASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.|+++|..||+|| .|.+|++||+.+
T Consensus 625 lsFS~dg~vLasgg--~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 625 LSFSRDGNVLASGG--ADNSVRLWDLTK 650 (707)
T ss_pred EEEecCCCEEEecC--CCCeEEEEEchh
Confidence 99999999999999 899999999863
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-37 Score=216.72 Aligned_cols=236 Identities=22% Similarity=0.430 Sum_probs=191.0
Q ss_pred CCCCceeeec-------ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 2 SSDRSLESFR-------PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
|+|.++..|+ -..+++.++||...|..++.++||++.++++.|+++++||+... .....|.+|..
T Consensus 35 srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--------~~t~~f~GH~~ 106 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--------ESTRRFVGHTK 106 (315)
T ss_pred ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--------cEEEEEEecCC
Confidence 4677777664 34578999999999999999999999999999999999988653 44555666666
Q ss_pred ccccce---------------eEEEEecCCCccceeccc-CCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeee
Q 042146 75 GISDLA---------------TIRLWDVPTATSLKTLIG-HTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLK 136 (262)
Q Consensus 75 ~v~~~~---------------~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~ 136 (262)
.+.+++ +|++|+............ +.+.|+|+.|+|+ ..++++++.|++|++||+++.+...
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 555444 899999865544333332 3789999999996 7899999999999999999999999
Q ss_pred eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCc
Q 042146 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRK 197 (262)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~ 197 (262)
.+.+|.+.++.+++||||.+.++|+.||.+.+||++. |+...|+.+.. ..|+|||++++.
T Consensus 187 ~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKA 265 (315)
T ss_pred ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC-CceEEEeccchh
Confidence 9999999999999999999999999999999999987 66666666654 459999999999
Q ss_pred eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++..++....... .....-...+++|+++|..|++|- .|+.|++|.+..
T Consensus 266 ~v~~l~~d~~g~s-------------~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~~ 314 (315)
T KOG0279|consen 266 VVEELKLDGIGPS-------------SKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVAK 314 (315)
T ss_pred hhhhccccccccc-------------cccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEeec
Confidence 9988865322210 000233467889999999999998 899999999753
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=209.40 Aligned_cols=228 Identities=19% Similarity=0.435 Sum_probs=198.4
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
++|-+|+.|+ +....++++...+.|+.+...|++++||+++. ..||+||+. ...+.+...+.+|...|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~------S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN------SNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc------CCCCCceeEEeccCCceEEE
Confidence 5789999997 56788899877889999999999999999885 689999994 44556778888887777666
Q ss_pred e---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCC
Q 042146 80 A---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSD 143 (262)
Q Consensus 80 ~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~ 143 (262)
+ +++|||++...+.+.++ |.++|+++..+|+...|++|..+|.|++||+....+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 5 99999999966666655 77999999999999999999999999999999887666553 3446
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEEEEecCCC-
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLRLWNYSTR- 196 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~i~d~~~~- 196 (262)
+|.++...|+|.+|+.+...|+.++|++.. |++++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999999999999999865 89999999999999999999987
Q ss_pred ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+....+.+ |...+..++||.++.+|+||+ .|+.+++|++..
T Consensus 249 kle~~l~g----------------------h~rWvWdc~FS~dg~YlvTas--sd~~~rlW~~~~ 289 (311)
T KOG0315|consen 249 KLELVLTG----------------------HQRWVWDCAFSADGEYLVTAS--SDHTARLWDLSA 289 (311)
T ss_pred eeEEEeec----------------------CCceEEeeeeccCccEEEecC--CCCceeeccccc
Confidence 55555555 889999999999999999999 899999999864
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.4e-36 Score=212.66 Aligned_cols=226 Identities=23% Similarity=0.399 Sum_probs=189.2
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc----ccCCccccccce---eEEE
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK----FTGHEQGISDLA---TIRL 84 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~---~i~v 84 (262)
.++..++|++|.+.|.++.|++|+++|+++|.||.+.|||.-+.......+...... +.+....|.+-+ ...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 345668999999999999999999999999999999999976544433333332222 222223332222 6778
Q ss_pred EecCCC------ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEE
Q 042146 85 WDVPTA------TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMI 157 (262)
Q Consensus 85 ~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 157 (262)
|++.+. ...+.+.+|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.|
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 887754 34567899999999999987 56788999999999999999999999999999999999999 99999
Q ss_pred EEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 158 VTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
++|+.|+..++||+|. |+|.-+++|++|++.++||++..+.+..+....
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~----------- 271 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS----------- 271 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-----------
Confidence 9999999999999998 899999999999999999999999998887422
Q ss_pred cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
-..+|++++||..|++|++|. .|.++.+||.-
T Consensus 272 ---------~~~gitSv~FS~SGRlLfagy--~d~~c~vWDtl 303 (343)
T KOG0286|consen 272 ---------IICGITSVAFSKSGRLLFAGY--DDFTCNVWDTL 303 (343)
T ss_pred ---------ccCCceeEEEcccccEEEeee--cCCceeEeecc
Confidence 456899999999999999998 89999999963
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-35 Score=224.55 Aligned_cols=221 Identities=23% Similarity=0.466 Sum_probs=186.6
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
+.|+++..|+ ||++..+++.|..-|.|+.|+|||.+||+++.||++.+||
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD---------------------------- 218 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD---------------------------- 218 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc----------------------------
Confidence 5689999996 8999999999999999999999999999999999988884
Q ss_pred eeEEEEecCCCccceecc---cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-------------------
Q 042146 80 ATIRLWDVPTATSLKTLI---GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV------------------- 137 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------------- 137 (262)
-.+++.+..+. +|++.|.+++|+||+..+++++.|.+++|||+.+++++++
T Consensus 219 -------Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 219 -------GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred -------CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 45666666665 8999999999999999999999999999999987654432
Q ss_pred ------------------------eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------
Q 042146 138 ------------------------LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------- 173 (262)
Q Consensus 138 ------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------- 173 (262)
+.+|...|+++..+|++++|++|+.||.|.-|+..+
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 347999999999999999999999999999999765
Q ss_pred --------------------------------------------------------------------------------
Q 042146 174 -------------------------------------------------------------------------------- 173 (262)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (262)
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv 451 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV 451 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence
Q ss_pred -CCccEEEEEcCCCeEEEEecCCCceeeE--EeccCCceeEEEEEEecCCCeeEEc-----------------------c
Q 042146 174 -PNGKFILVGTLDNTLRLWNYSTRKILKT--YSGYTNSKYCISSTFSVTNGKYIVS-----------------------H 227 (262)
Q Consensus 174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~ 227 (262)
|++.++++|+.||.|+||.+..+.+... ...|...+.++ .++++..++.++ |
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v--aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH 529 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV--AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH 529 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE--EECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence 7899999999999999999987664433 34444444444 444433333333 9
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+|.+++|+|+..++|||+ -|-+|.||++++
T Consensus 530 takI~~~aWsP~n~~vATGS--lDt~Viiysv~k 561 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGS--LDTNVIIYSVKK 561 (603)
T ss_pred eeeEEEEEeCCCceEEEecc--ccceEEEEEccC
Confidence 99999999999999999999 789999999875
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.9e-37 Score=227.04 Aligned_cols=235 Identities=24% Similarity=0.464 Sum_probs=193.1
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCC--CCCCCCCCCCCcccc--CCc---
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI--SNFDSTPPSPLQKFT--GHE--- 73 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~--~~~--- 73 (262)
+.|....|. .+.....+++|..+|+++.|++++.++++|+.+|.|++|+..-. +.........+..+. ...
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF 195 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKF 195 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCcee
Confidence 446556665 56667778999999999999999999999999999999976431 111111111111111 111
Q ss_pred cccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146 74 QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 74 ~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (262)
......+.|+|||....+....+.+|...|.++.|+|...++++|+.|..|++||.++++++.++..|+..|..+.|+|+
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n 275 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN 275 (464)
T ss_pred EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence 11233448999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146 154 GTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+++|++++.|..+++||++. ....+|.+|+.||.|..|.+...+++..+..
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-------- 347 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-------- 347 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc--------
Confidence 99999999999999999995 4667899999999999999885555554432
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+|...|.+++|+|-|.+|++|+ .|.++++|.-+
T Consensus 348 -------------AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~ 380 (464)
T KOG0284|consen 348 -------------AHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRN 380 (464)
T ss_pred -------------ccccceeeeeccccceeEeecC--CCcceeeeccC
Confidence 1999999999999999999999 99999999754
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=235.62 Aligned_cols=156 Identities=26% Similarity=0.606 Sum_probs=147.5
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.+.||+......+...++|...+++++++|||+++++|++||+|+|||..++-|..++..|++.|+.+.|+..++.++++
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 78889988888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCC---------------------CCccEEEEEcCCC-eEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 161 SYDGLYRILDAST---------------------PNGKFILVGTLDN-TLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 161 ~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
+.||+|+.||+.. |.|..+++|+.|. .|.+|++.+|+++..+.+
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-------------- 476 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-------------- 476 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--------------
Confidence 9999999999876 6789999998875 799999999999999998
Q ss_pred CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|++||.+++|+|++..|+++| -|.+||+|++-
T Consensus 477 --------HEgPVs~l~f~~~~~~LaS~S--WDkTVRiW~if 508 (893)
T KOG0291|consen 477 --------HEGPVSGLSFSPDGSLLASGS--WDKTVRIWDIF 508 (893)
T ss_pred --------CCCcceeeEEccccCeEEecc--ccceEEEEEee
Confidence 999999999999999999999 56999999973
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.4e-36 Score=218.85 Aligned_cols=234 Identities=18% Similarity=0.386 Sum_probs=185.8
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-----CCccccCCcc--ccccceeEEE
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-----PLQKFTGHEQ--GISDLATIRL 84 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~--~v~~~~~i~v 84 (262)
++++.+.+++|.+.|+|+++.|-..+|++|+.|++++|||+.+........+. .+.....|.. .......|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 78899999999999999999999999999999999999998875443222210 0111111111 1112238999
Q ss_pred EecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 85 WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.|-...+++|+.|+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred eEEEEeCCC------------------------------------------------------------CCccEEEEEcC
Q 042146 165 LYRILDAST------------------------------------------------------------PNGKFILVGTL 184 (262)
Q Consensus 165 ~i~~~d~~~------------------------------------------------------------~~~~~l~~~~~ 184 (262)
+|++||++. ....++++|++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~d 379 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGD 379 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCC
Confidence 999999886 23456667777
Q ss_pred CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+|.+.+||.++|...+..+....+... ..+..|.+.+|...|..|++|. .|.+|++|+-++
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl--------------~sEagI~as~fDktg~rlit~e--adKtIk~~keDe 440 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSL--------------ESEAGIFASCFDKTGSRLITGE--ADKTIKMYKEDE 440 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCcc--------------ccccceeEEeecccCceEEecc--CCcceEEEeccc
Confidence 777777777766554444221111000 0566799999999999999999 899999998654
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.9e-36 Score=237.87 Aligned_cols=217 Identities=26% Similarity=0.496 Sum_probs=182.4
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
.++..-...++|..|++++.+||.|-.|..|++|.+.+.+.........+....-. .+.-.+.+.|-.......++
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~----sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTE----SADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccccc----ccchhhhhccccCCceeEEe
Confidence 34444456799999999999999999999999998875322111111111111000 00112445566666677789
Q ss_pred ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146 97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--- 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--- 173 (262)
.+|.++|....|+|+.++|+++++|+++++|.+.+..++..+++|..||+++.|+|.|-+|++++.|++.++|....
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS 236 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 236 (262)
|+..|+++|+.|.++++||..+|..++.|.+ |.++|.+++|
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------------------H~~~V~al~~ 585 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----------------------HKGPVTALAF 585 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC----------------------CCCceEEEEE
Confidence 9999999999999999999999999999988 9999999999
Q ss_pred cCCCCeEEEeeecCCCcEEEEeecc
Q 042146 237 HPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 237 ~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
||+|++|++|+ +||.|++||+..
T Consensus 586 Sp~Gr~LaSg~--ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 586 SPCGRYLASGD--EDGLIKIWDLAN 608 (707)
T ss_pred cCCCceEeecc--cCCcEEEEEcCC
Confidence 99999999999 999999999864
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=217.09 Aligned_cols=217 Identities=32% Similarity=0.544 Sum_probs=194.0
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------ 80 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------ 80 (262)
..+.+.+.+|..+|+.+-|+|+-..++++++|++|++||+.+... ...+.+|...+..+.
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------e~~LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------ERSLRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--------hhhhhccccceeEEEEecCccEEEecC
Confidence 367788889999999999999999999999999999998876443 344455554443332
Q ss_pred ---eEEEEecCC-CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146 81 ---TIRLWDVPT-ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 81 ---~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
.+++||..+ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|..-|..++.+.||.+
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeE
Confidence 589999987 5678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEeCCC-----------------------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146 157 IVTSSYDGLYRILDAST-----------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~-----------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
+++|+.|.++++|-+.+ ..++++.+++.|++|++||+.++.++.+
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 99999999999998765 2357999999999999999999999999
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.+ |...|..++|+|.|++|+++. +|+++++||+++
T Consensus 330 L~g----------------------hdnwVr~~af~p~Gkyi~Sca--DDktlrvwdl~~ 365 (406)
T KOG0295|consen 330 LVG----------------------HDNWVRGVAFSPGGKYILSCA--DDKTLRVWDLKN 365 (406)
T ss_pred Eec----------------------ccceeeeeEEcCCCeEEEEEe--cCCcEEEEEecc
Confidence 998 999999999999999999999 899999999975
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=229.44 Aligned_cols=219 Identities=27% Similarity=0.547 Sum_probs=193.0
Q ss_pred eeecccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------
Q 042146 8 ESFRPYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------ 80 (262)
Q Consensus 8 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------ 80 (262)
+-|-|-+.++++.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ....+..+.+|..+|..+.
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGT 271 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCC
Confidence 44557788999999999999999999 899999999999999998743 3555666777776665544
Q ss_pred ---------eEEEEecCCCccceecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 81 ---------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 81 ---------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
.|++||.++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 99999999999998886 35678999999987 88999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC---------------------------------------------------------
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST--------------------------------------------------------- 173 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------------------------------------------- 173 (262)
-++++.+++++.|+.+++|+.+.
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 99999999999999999999775
Q ss_pred -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-C
Q 042146 174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-N 241 (262)
Q Consensus 174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~ 241 (262)
|||.+|++|+.||.+.+||.++-+++..++. |.+++..+.|+|.. .
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka----------------------h~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA----------------------HDQPCIGVDWHPVEPS 488 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc----------------------CCcceEEEEecCCCcc
Confidence 7888888888888888888888888888887 88999999999974 5
Q ss_pred eEEEeeecCCCcEEEEe
Q 042146 242 IIASGALDNDRTMKIWT 258 (262)
Q Consensus 242 ~l~~~~~d~d~~i~iw~ 258 (262)
.+||++ -||.|++|+
T Consensus 489 kvat~~--w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCG--WDGLIKIWD 503 (503)
T ss_pred eeEecc--cCceeEecC
Confidence 789999 679999996
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-35 Score=229.33 Aligned_cols=223 Identities=23% Similarity=0.439 Sum_probs=192.7
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCCcccc---ccceeEEEEe
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGHEQGI---SDLATIRLWD 86 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~v---~~~~~i~v~d 86 (262)
...+++..|...|.++.|+|..++++++-..|.|.|||.++....... .+.....+-+....+ .....|+||+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 345667779999999999999999999999999999998875433221 122222333333332 2233899999
Q ss_pred cCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCC
Q 042146 87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDG 164 (262)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 164 (262)
..+++.++.+..|.+.|.+++.||..++++++|.|-+|++||.+.. .+.+++.+|+..|.+++|.| |.+.+++++.|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 9999999999999999999999999999999999999999999865 67889999999999999999 778999999999
Q ss_pred eEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 165 LYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 165 ~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
+|++|.+.+ .+.++|++|+.|..|+|||..+..|++++.+
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG------------------ 225 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG------------------ 225 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc------------------
Confidence 999999887 5668999999999999999999999999998
Q ss_pred eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...|..+.|+|.-+++++|| +||++|||.-.
T Consensus 226 ----Ht~Nvs~v~fhp~lpiiisgs--EDGTvriWhs~ 257 (794)
T KOG0276|consen 226 ----HTNNVSFVFFHPELPIIISGS--EDGTVRIWNSK 257 (794)
T ss_pred ----ccccceEEEecCCCcEEEEec--CCccEEEecCc
Confidence 888999999999999999999 99999999754
No 19
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=220.19 Aligned_cols=193 Identities=31% Similarity=0.535 Sum_probs=167.5
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
|.+..+.+..|+.+|.-+.||++|+|||+++.|.+..+|++ +.|.+ -+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v-------------------------------~~d~~-~k 260 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV-------------------------------VYDVH-FK 260 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE-------------------------------ecCcc-ee
Confidence 56677889999999999999999999999999999999954 33433 45
Q ss_pred cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..+++.+|..+|..+.|+||.+++++++.+..+.+||+.++.+.+.+.. +...+.+++|.|||..+++|+.|+.+..||
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 6678899999999999999999999999999999999999998877743 357899999999999999999999999999
Q ss_pred CCC-----------------------------------------------------------------------------
Q 042146 171 AST----------------------------------------------------------------------------- 173 (262)
Q Consensus 171 ~~~----------------------------------------------------------------------------- 173 (262)
+..
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred CCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 775
Q ss_pred -----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeE
Q 042146 174 -----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI 224 (262)
Q Consensus 174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
.+..++++|++|+.|+||+..+|+++..+.+
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-------------------- 480 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-------------------- 480 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--------------------
Confidence 3556778888888888888888888888777
Q ss_pred EccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146 225 VSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 225 ~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...|++++|+|.. .++|++| +||+||||.+.
T Consensus 481 --Hs~~vNcVswNP~~p~m~ASas--DDgtIRIWg~~ 513 (519)
T KOG0293|consen 481 --HSKTVNCVSWNPADPEMFASAS--DDGTIRIWGPS 513 (519)
T ss_pred --CcceeeEEecCCCCHHHhhccC--CCCeEEEecCC
Confidence 89999999999965 4788888 89999999876
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=199.96 Aligned_cols=218 Identities=27% Similarity=0.473 Sum_probs=188.3
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----------- 80 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------- 80 (262)
|.+..+.+..|+++|+++.|+-+|+|.++++.|++|++|+. .....+..+.+|...+...+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp--------~rg~liktYsghG~EVlD~~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP--------LRGALIKTYSGHGHEVLDAALSSDNSKFASC 77 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecc--------cccceeeeecCCCceeeeccccccccccccC
Confidence 34456778899999999999999999999999999999954 44455556666655543333
Q ss_pred ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--eeeeeeecCCCCeeeEEEccCC
Q 042146 81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVLPAHSDPVTAIDFNRDG 154 (262)
Q Consensus 81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 154 (262)
.+.+||+++|+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+......|.++... +
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~ 155 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--E 155 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--c
Confidence 8999999999999999999999999999999999999999999999999864 6788888788899999886 5
Q ss_pred CEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEE
Q 042146 155 TMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 216 (262)
..+++|+.||+++.||+|. +++++.++++.|+++++.|-.+|++++.+++|.+..
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e------- 228 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME------- 228 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-------
Confidence 6899999999999999987 799999999999999999999999999999976432
Q ss_pred ecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 217 SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.-..++++.....+++|+ +||.|++||+.+
T Consensus 229 -------------ykldc~l~qsdthV~sgS--EDG~Vy~wdLvd 258 (307)
T KOG0316|consen 229 -------------YKLDCCLNQSDTHVFSGS--EDGKVYFWDLVD 258 (307)
T ss_pred -------------eeeeeeecccceeEEecc--CCceEEEEEecc
Confidence 234667777888999999 999999999864
No 21
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=231.34 Aligned_cols=225 Identities=26% Similarity=0.507 Sum_probs=184.1
Q ss_pred ccccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC---------------------------C-----
Q 042146 12 PYTLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN---------------------------F----- 58 (262)
Q Consensus 12 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------------------------~----- 58 (262)
.....+.+. +|.+.|.+|.||+||+|||+||.|+.|+||.+.+... .
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 334556667 8999999999999999999999999999999765000 0
Q ss_pred --------------------CCCCCCCCccccCCccccccce--------------eEEEEecCCCccceecccCCcceE
Q 042146 59 --------------------DSTPPSPLQKFTGHEQGISDLA--------------TIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 59 --------------------~~~~~~~~~~~~~~~~~v~~~~--------------~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
......+...+.+|...|..+. +|++|++...++++.+. |...|+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVT 413 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVT 413 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeE
Confidence 0011234445566766665555 99999999999998886 999999
Q ss_pred EEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------
Q 042146 105 CINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------- 173 (262)
Q Consensus 105 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------- 173 (262)
|++|+| |.+++++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|++..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 999999 99999999999999999998777655444 458899999999999999999999999999876
Q ss_pred -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 234 (262)
.+...+++.+.|..|+|||.++..++..|+++.+. ..=...
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------------------~SQ~~A 552 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------------------SSQISA 552 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--------------------Ccceee
Confidence 22335888889999999999999999999986532 223466
Q ss_pred EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 235 ASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 235 ~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.|+.||++|++++ +|..|+||+++
T Consensus 553 sfs~Dgk~IVs~s--eDs~VYiW~~~ 576 (712)
T KOG0283|consen 553 SFSSDGKHIVSAS--EDSWVYIWKND 576 (712)
T ss_pred eEccCCCEEEEee--cCceEEEEeCC
Confidence 7899999999999 89999999974
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-34 Score=227.56 Aligned_cols=240 Identities=19% Similarity=0.421 Sum_probs=196.7
Q ss_pred eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------
Q 042146 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------ 80 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------ 80 (262)
+|.|+....+...++|...++|++++|||.++|||+.||.|+|||... +-+...+..|..+++.+.
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--------gfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--------GFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC--------ceEEEEeccCCCceEEEEEEecCC
Confidence 567777788888899999999999999999999999999999997654 344455566666554443
Q ss_pred ---------eEEEEecCCCccceecccCC-cceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146 81 ---------TIRLWDVPTATSLKTLIGHT-NYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAID 149 (262)
Q Consensus 81 ---------~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~ 149 (262)
+|+.||+...+..+++.... ....|++..|.|.++++|+.|. .|.+|++++|+.+..+.+|++||.+++
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 99999999998888876543 4678999999999999999887 699999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 150 FNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
|+|++..|++++.|.+|++||+-. |+|+.|++++.||.|.+||...+..+..+.+-....
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred EccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcc
Confidence 999999999999999999999765 999999999999999999999877776655422111
Q ss_pred eEEEEEEecCCCeeEE---ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 210 YCISSTFSVTNGKYIV---SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.... ......+ +.....+.+++++||..+++|| ....|.+|++.+
T Consensus 566 ~gR~-----~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG--~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 566 GGRK-----ETDRITAENSAKGKTFTTICYSADGKCILAGG--ESNSICIYDVPE 613 (893)
T ss_pred cccc-----ccceeehhhcccCCceEEEEEcCCCCEEEecC--CcccEEEEECch
Confidence 0000 0000000 1457899999999999999999 889999999865
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-35 Score=212.99 Aligned_cols=227 Identities=30% Similarity=0.542 Sum_probs=198.9
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI--- 76 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v--- 76 (262)
|.|.+|+.|+ ++++...+++|+..|..++|+..|++||+++.|=.+++||.+... ..+..+.+|...+
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-------~c~ks~~gh~h~vS~V 199 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-------RCIKSLIGHEHGVSSV 199 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-------HHHHHhcCcccceeeE
Confidence 3588988886 677899999999999999999999999999999999999987521 1111122222222
Q ss_pred ------------ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146 77 ------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144 (262)
Q Consensus 77 ------------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (262)
....+|+.|++.++-++.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...++.|..+
T Consensus 200 ~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 200 FFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred EEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 22238999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEccC----------C-----CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEE
Q 042146 145 VTAIDFNRD----------G-----TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLR 189 (262)
Q Consensus 145 v~~~~~~~~----------~-----~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~ 189 (262)
|.+++|.|. + .++++++.|++|++||+.. |.|+||+++.+|++++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 999999763 2 4899999999999999987 8899999999999999
Q ss_pred EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
+||++++++...+.. |..-|+++.|+.+..+++||+ -|.++++|..
T Consensus 360 vwdl~~~~cmk~~~a----------------------h~hfvt~lDfh~~~p~VvTGs--Vdqt~KvwEc 405 (406)
T KOG0295|consen 360 VWDLKNLQCMKTLEA----------------------HEHFVTSLDFHKTAPYVVTGS--VDQTVKVWEC 405 (406)
T ss_pred EEEeccceeeeccCC----------------------CcceeEEEecCCCCceEEecc--ccceeeeeec
Confidence 999999999999987 888899999999999999999 8899999974
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.1e-34 Score=214.00 Aligned_cols=234 Identities=21% Similarity=0.382 Sum_probs=199.1
Q ss_pred CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CC-CCccccCCcccc
Q 042146 2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PS-PLQKFTGHEQGI 76 (262)
Q Consensus 2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~-~~~~~~~~~~~v 76 (262)
+.||.++.|. +..++.+|..|.+||.++.|+.+|+||++++.||++.+||..........+ .. .-..+......+
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 4688899996 678999999999999999999999999999999999999975432211111 11 112222332222
Q ss_pred cc--ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC
Q 042146 77 SD--LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG 154 (262)
Q Consensus 77 ~~--~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (262)
.+ .+.|+|+.+....++.++.+|.++|.+|.|+|.+.+|++++.|++++||........+.+.+|+..|..+.|+|.|
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 22 2269999999999999999999999999999999999999999999999998888899999999999999999853
Q ss_pred ---------CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 155 ---------TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 155 ---------~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
..+++++.|++|++||+.. |+++++++|+.||.|.+|+.++++..+.+.
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-- 491 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-- 491 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--
Confidence 4799999999999999877 899999999999999999999999999988
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
..+.|..++|+.+|..|..+- .|+.+.+-|+.
T Consensus 492 ---------------------~~~~Ifel~Wn~~G~kl~~~~--sd~~vcvldlr 523 (524)
T KOG0273|consen 492 ---------------------GTGGIFELCWNAAGDKLGACA--SDGSVCVLDLR 523 (524)
T ss_pred ---------------------CCCeEEEEEEcCCCCEEEEEe--cCCCceEEEec
Confidence 455699999999999999888 89999998875
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=227.96 Aligned_cols=227 Identities=26% Similarity=0.500 Sum_probs=193.4
Q ss_pred Cceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---
Q 042146 5 RSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA--- 80 (262)
Q Consensus 5 ~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 80 (262)
+.++.|. +....+.+.||+..|.+++...+|.+|+||+.|+++++|.+++ ......+.....+|...+..++
T Consensus 346 ~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC----Ccchhhhhhhhcccccccceeeecc
Confidence 4455553 2334558899999999999777889999999999999998854 2233334445555665554444
Q ss_pred -------------eEEEEecCCCccc---------eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 81 -------------TIRLWDVPTATSL---------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 81 -------------~i~v~d~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
++++|++...+.. .....|...|+|++++|+.+++++||.|.+.++|+++.......+
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence 9999999762211 133579999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKI 198 (262)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~ 198 (262)
.+|+..|.++.|+|..+.++++|.|++|++|.+.+ .++..|++++.||.|++|++.++++
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999999999999999999999999999887 6889999999999999999999999
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
+.++.. |.++|.+++.+|...+++||+ .||.|.+|.=
T Consensus 582 ~~tlD~----------------------H~DrvWaL~~~~~~~~~~tgg--~Dg~i~~wkD 618 (775)
T KOG0319|consen 582 EMTLDA----------------------HNDRVWALSVSPLLDMFVTGG--GDGRIIFWKD 618 (775)
T ss_pred hhhhhh----------------------ccceeEEEeecCccceeEecC--CCeEEEEeec
Confidence 999998 999999999999999999999 8999999974
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.2e-34 Score=229.27 Aligned_cols=231 Identities=34% Similarity=0.664 Sum_probs=198.7
Q ss_pred CCCCceeeecc--cc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFRP--YT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
+.|+.+..|.. .+ +.+.+.+|...|++++|+|+++++++++.|++|+|||+.. .......+.+|...+.
T Consensus 178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~-------~~~~~~~l~gH~~~v~ 250 (456)
T KOG0266|consen 178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD-------DGRNLKTLKGHSTYVT 250 (456)
T ss_pred cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC-------CCeEEEEecCCCCceE
Confidence 35667776653 34 6677789999999999999999999999999999998732 1233344445555444
Q ss_pred cce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--eeeeeec
Q 042146 78 DLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--CLKVLPA 140 (262)
Q Consensus 78 ~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~ 140 (262)
++. +|++||+++++++..+.+|...|++++|+++++++++++.|+.|++||+.+++ ++..+..
T Consensus 251 ~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 251 SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC
Confidence 333 99999999999999999999999999999999999999999999999999998 5667766
Q ss_pred CCCC--eeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCC
Q 042146 141 HSDP--VTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 141 ~~~~--v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~ 195 (262)
+... ++++.|+|++.++++++.|+.+++||++. +.+.++++|+.|+.|++||+.+
T Consensus 331 ~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 331 AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 6554 99999999999999999999999999986 6789999999999999999999
Q ss_pred CceeeEEeccCCceeEEEEEEecCCCeeEEcc-ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSH-RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+..+..+.+ | ...+..++++|...++++++++.|+.+++|+.+.
T Consensus 411 ~~~~~~l~~----------------------h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 411 GGILQRLEG----------------------HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred cchhhhhcC----------------------CCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 999988887 7 7889999999999999999866789999998763
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.8e-34 Score=198.49 Aligned_cols=207 Identities=17% Similarity=0.369 Sum_probs=163.2
Q ss_pred CeEEEecCCCeEEEeecCCCCCCCCCC----CCCCccccCCccccc--cceeEEEEecCCCc--cceecccCCcceEEEE
Q 042146 36 RLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQKFTGHEQGIS--DLATIRLWDVPTAT--SLKTLIGHTNYVFCIN 107 (262)
Q Consensus 36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~v~--~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~ 107 (262)
-+|+++|.|.+||+|...++....... .....++......+. .-..|++||+.++. ++.++.+|...|+++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 479999999999999665543221111 111112222222111 12289999998765 5788999999999999
Q ss_pred EeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------
Q 042146 108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------- 173 (262)
Q Consensus 108 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------- 173 (262)
|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+..
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 99999999999999999999999977766664 789999999999999999999999999999987
Q ss_pred -------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146 174 -------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 174 -------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 246 (262)
++|.+++++...|..++|++-+.+....+..-. .+..|.+.+..+.+||++++||++
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~----------------k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH----------------KFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh----------------heecccceEEEEEECCCCcEEEee
Confidence 899999999999999999998754333222100 122399999999999999999999
Q ss_pred eecCCCcEEEEeecc
Q 042146 247 ALDNDRTMKIWTQEK 261 (262)
Q Consensus 247 ~~d~d~~i~iw~~~~ 261 (262)
| .|.+++||+.+.
T Consensus 234 s--sdktv~iwn~~~ 246 (311)
T KOG0315|consen 234 S--SDKTVKIWNTDD 246 (311)
T ss_pred c--CCceEEEEecCC
Confidence 9 999999999764
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.4e-33 Score=197.99 Aligned_cols=231 Identities=26% Similarity=0.459 Sum_probs=195.3
Q ss_pred CCCceeeecccc---cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC--CCccccCCcc---
Q 042146 3 SDRSLESFRPYT---LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS--PLQKFTGHEQ--- 74 (262)
Q Consensus 3 ~d~~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~--- 74 (262)
+|+.|..|.-+. -...+++|.++|..+.|.+|++.+++++.|++++.||.++++........ ....+.....
T Consensus 67 ~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCe
Confidence 678888887333 44567899999999999999999999999999999998875443222211 1111111111
Q ss_pred ---ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146 75 ---GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151 (262)
Q Consensus 75 ---~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 151 (262)
.....+++++||+++...++++. .+.+++++.|..++..+.+|+-|+.|++||++.+...+.+.+|..+|+.+..+
T Consensus 147 lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS 225 (338)
T ss_pred EEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEec
Confidence 12233499999999988888775 46789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 152 RDGTMIVTSSYDGLYRILDAST----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
|+|..+.+-+.|.++++||++. |++.++.+|+.|..+++||......+..++
T Consensus 226 ~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 226 RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 9999999999999999999987 899999999999999999999889999999
Q ss_pred ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
+ |.+.|+++.|+|..++|.+++ .|.+|++=.
T Consensus 306 G----------------------h~gsvn~~~Fhp~e~iils~~--sdk~i~lge 336 (338)
T KOG0265|consen 306 G----------------------HYGSVNEVDFHPTEPIILSCS--SDKTIYLGE 336 (338)
T ss_pred C----------------------cceeEEEeeecCCCcEEEEec--cCceeEeec
Confidence 8 999999999999999999999 889998643
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=220.67 Aligned_cols=220 Identities=39% Similarity=0.756 Sum_probs=186.6
Q ss_pred cceecccC-cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-------------
Q 042146 15 LTQTLNGH-LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------- 80 (262)
Q Consensus 15 ~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------- 80 (262)
+.+.+..| ...|.++.|+++|++|++++.|+.+++|+...... .....+.+|...+..+.
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence 35555555 78899999999999999999999999998854331 12222344444443333
Q ss_pred --eEEEEec-CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 --TIRLWDV-PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 --~i~v~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
+|++||+ ..+..++.+++|...|++++|+|+++++++|+.|++|++||+++++++..+.+|.++|++++|++++++|
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence 9999999 5558889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 158 VTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
++++.|+.|++||+.. +++.++++++.|+.+++||+..+..+..+.+|...+.
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~--- 380 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVR--- 380 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcce---
Confidence 9999999999999754 7899999999999999999999999999998654321
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+.+...++.+.++++|+ .|+.|++|++..
T Consensus 381 ----------------~~~~~~~~~~~~~i~sg~--~d~~v~~~~~~s 410 (456)
T KOG0266|consen 381 ----------------CIFSPTLSTGGKLIYSGS--EDGSVYVWDSSS 410 (456)
T ss_pred ----------------eEecccccCCCCeEEEEe--CCceEEEEeCCc
Confidence 234445588999999999 999999999874
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-32 Score=207.81 Aligned_cols=205 Identities=22% Similarity=0.412 Sum_probs=177.6
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---------------eeEEEEec
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---------------ATIRLWDV 87 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------~~i~v~d~ 87 (262)
...|++++|+.+|..||+|+.||.++||+..... +..+..|..+|..+ +++.+||.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 4679999999999999999999999999876532 22333333333322 28999999
Q ss_pred CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 88 PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
.+++..+.+.-|..+-..+.|-. ...+++.+.|+.|+|+.+....++.++.+|.++|.++.|.|.+.+|++|+.|++++
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred cCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 99999999888888877788874 45688888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 168 ILDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 168 ~~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
+|.+.. ..+..+++++.|++|++||+..+.++..|..
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-------------- 450 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-------------- 450 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--------------
Confidence 999665 3466899999999999999999999999987
Q ss_pred CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|..+|.+++|+|+|+++|+|+ .||.|.+|+++.
T Consensus 451 --------H~~pVysvafS~~g~ylAsGs--~dg~V~iws~~~ 483 (524)
T KOG0273|consen 451 --------HQEPVYSVAFSPNGRYLASGS--LDGCVHIWSTKT 483 (524)
T ss_pred --------CCCceEEEEecCCCcEEEecC--CCCeeEeccccc
Confidence 999999999999999999999 899999999763
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=198.62 Aligned_cols=189 Identities=23% Similarity=0.444 Sum_probs=168.2
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
+...+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.. ..+-..
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----------------------------------dceN~~ 84 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG----------------------------------DCENFW 84 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc----------------------------------ccccee
Confidence 5567789999999999999999999999999999997543 122334
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~ 173 (262)
.+++|++.|..+.|.++++.+++++.|.+|+.||.++++.++.++.|..-|+++.-+.-| .++.+++.||++++||+|.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 566999999999999999999999999999999999999999999999999999844444 4677888999999999995
Q ss_pred -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 234 (262)
..+..+++|+-|+.|++||++.+.....+.+ |.++|+.+
T Consensus 165 k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG----------------------h~DtIt~l 222 (338)
T KOG0265|consen 165 KEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG----------------------HADTITGL 222 (338)
T ss_pred cchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec----------------------ccCceeeE
Confidence 4567789999999999999999999999998 99999999
Q ss_pred EEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 235 ASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 235 ~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+|+|.++.+-+ -|.++++||+..
T Consensus 223 sls~~gs~llsns--Md~tvrvwd~rp 247 (338)
T KOG0265|consen 223 SLSRYGSFLLSNS--MDNTVRVWDVRP 247 (338)
T ss_pred EeccCCCcccccc--ccceEEEEEecc
Confidence 9999999999999 679999999864
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.2e-32 Score=199.05 Aligned_cols=215 Identities=20% Similarity=0.379 Sum_probs=188.9
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-------------
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------- 80 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------- 80 (262)
..+.+|..|+.+|.+++.+|+.++++||+.|..-.+|+..+ ......+.+|...|.+..
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~--------ge~~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST--------GEFAGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC--------CcceeEecCCCCceEEEEEccCceEEEecCC
Confidence 34678899999999999999999999999999999996644 345566777777776554
Q ss_pred --eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 --TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
.|+||...++.....+......+.=+.|||.+..|++|+.||.+-+|.+.++...+.+.+|..++++=.|.|+|+.++
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 899999999998888876677888999999999999999999999999998888889999999999999999999999
Q ss_pred EEeCCCeEEEEeCCC-----------------------------------------------------------------
Q 042146 159 TSSYDGLYRILDAST----------------------------------------------------------------- 173 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~----------------------------------------------------------------- 173 (262)
++..||+|++|+..+
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 999999999999876
Q ss_pred -------------------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 -------------------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 -------------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+..+|++++.+|.|+.||.++|++..++.+
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence 1256777777788888888888877777777
Q ss_pred cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|..+|.+++.+|++++++|+| .|++.+||+.+
T Consensus 367 ----------------------H~~~Il~f~ls~~~~~vvT~s--~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 ----------------------HQMGILDFALSPQKRLVVTVS--DDNTALVFEVP 398 (399)
T ss_pred ----------------------CchheeEEEEcCCCcEEEEec--CCCeEEEEecC
Confidence 999999999999999999999 89999999875
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-32 Score=190.44 Aligned_cols=191 Identities=26% Similarity=0.430 Sum_probs=162.3
Q ss_pred cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
...++.+++|++.+..++|+|- |..||+++.|+.|++|+.... ++..
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~--------------------------------~s~~ 51 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG--------------------------------DSWT 51 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC--------------------------------CcEE
Confidence 3467889999999999999998 889999999999999976421 0112
Q ss_pred cceec-ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC--CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 92 SLKTL-IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT--GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 92 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
+...+ .+|+..|.+++|+|.|++|++||.|.++.||.-.. .+++..+.+|...|.+++|+++|++|++|+.|+.|-+
T Consensus 52 ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWi 131 (312)
T KOG0645|consen 52 CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWI 131 (312)
T ss_pred EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEE
Confidence 22222 36899999999999999999999999999997653 3788999999999999999999999999999999999
Q ss_pred EeCCC-----------------------CCccEEEEEcCCCeEEEEecCC---CceeeEEeccCCceeEEEEEEecCCCe
Q 042146 169 LDAST-----------------------PNGKFILVGTLDNTLRLWNYST---RKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 169 ~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
|.+.. |...+|++++.|.+|++|+-.. -.+++++.+
T Consensus 132 We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g------------------ 193 (312)
T KOG0645|consen 132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG------------------ 193 (312)
T ss_pred EEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC------------------
Confidence 99874 7889999999999999998762 357888887
Q ss_pred eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|...|.+++|+|.|..|++++ +|++++||..
T Consensus 194 ----~~~TVW~~~F~~~G~rl~s~s--dD~tv~Iw~~ 224 (312)
T KOG0645|consen 194 ----HENTVWSLAFDNIGSRLVSCS--DDGTVSIWRL 224 (312)
T ss_pred ----ccceEEEEEecCCCceEEEec--CCcceEeeee
Confidence 777888888888888888888 8888888873
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.4e-34 Score=206.20 Aligned_cols=236 Identities=27% Similarity=0.486 Sum_probs=182.3
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeEEEE
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATIRLW 85 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i~v~ 85 (262)
+....+.|..|+|||+||++|+.||.|.+||+.+++......-.....+-.+...+.+ .+.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 3456689999999999999999999999999877644332222222222233333322 3389999
Q ss_pred ecCCCccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 86 DVPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 86 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
.+++|++++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++.++++|.+.|+...|.++|.++++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999987 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce-eEEEEE-----
Q 042146 165 LYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK-YCISST----- 215 (262)
Q Consensus 165 ~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~----- 215 (262)
+|++|+..+ .+...++++....+++|-++. |+.++.+....... .-+...
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 999999876 345667777777788887765 66666665322111 111111
Q ss_pred --------------EecCCC---eeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 216 --------------FSVTNG---KYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 216 --------------~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|....+ ..+..|+..|..++-+|..+.||+-+ +||.+++|+.
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYs--EDgllKLWkp 508 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYS--EDGLLKLWKP 508 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhc--ccchhhhcCC
Confidence 111111 11222888999999999999999999 9999999973
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=221.31 Aligned_cols=223 Identities=27% Similarity=0.493 Sum_probs=189.4
Q ss_pred eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc--------
Q 042146 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------- 78 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------- 78 (262)
+|+|+-..++..|..|.++|+.++|+|++.+|++|+.|-.|++|++... +.+..+.+|...|..
T Consensus 35 lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--------rclftL~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 35 LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--------RCLFTLLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--------eehhhhccccceeEEeeccCCCc
Confidence 4555678899999999999999999999999999999999999976553 334444444443332
Q ss_pred -------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe------------------
Q 042146 79 -------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK------------------ 133 (262)
Q Consensus 79 -------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------------ 133 (262)
..+|+||+..+++++..+.+|...|.|.+|+|...+++++|-|.+|+|||+..-+
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence 3399999999999999999999999999999999999999999999999984210
Q ss_pred -----------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEE
Q 042146 134 -----------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFIL 180 (262)
Q Consensus 134 -----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~ 180 (262)
..+.+.+|...|+-++|+|.-.++++|+.|+.|++|.+.. |..+.++
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 1234578999999999999999999999999999999876 7779999
Q ss_pred EEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 181 VGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 181 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+.++|+.|+|||+...+.+++++. ..++...++-+|..+++++| .|+-+.+|+++
T Consensus 267 SnsEDksirVwDm~kRt~v~tfrr----------------------endRFW~laahP~lNLfAAg---HDsGm~VFkle 321 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTFRR----------------------ENDRFWILAAHPELNLFAAG---HDSGMIVFKLE 321 (1202)
T ss_pred ecCCCccEEEEecccccceeeeec----------------------cCCeEEEEEecCCcceeeee---cCCceEEEEEc
Confidence 999999999999999999999986 55677888889998888877 47778888876
Q ss_pred cC
Q 042146 261 KE 262 (262)
Q Consensus 261 ~~ 262 (262)
.|
T Consensus 322 RE 323 (1202)
T KOG0292|consen 322 RE 323 (1202)
T ss_pred cc
Confidence 43
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.9e-31 Score=229.60 Aligned_cols=217 Identities=18% Similarity=0.345 Sum_probs=174.0
Q ss_pred cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC---------CCCccccC--C-cc---ccccceeEE
Q 042146 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP---------SPLQKFTG--H-EQ---GISDLATIR 83 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~~~--~-~~---~v~~~~~i~ 83 (262)
+..|.+.|.+++|+|++++||+|+.|+.|+||++........... ..+..+.. . .. .....+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 445899999999999999999999999999999754211000000 00001110 0 11 112234899
Q ss_pred EEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc-cCCCEEEEEe
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSS 161 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 161 (262)
+||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++..+..+.. ...+.++.|+ +++.+|++|+
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEe
Confidence 999999999999999999999999997 789999999999999999999988888864 4679999995 4789999999
Q ss_pred CCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCC------ceeeEEeccCCceeEEEEE
Q 042146 162 YDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTR------KILKTYSGYTNSKYCISST 215 (262)
Q Consensus 162 ~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~ 215 (262)
.||.|++||++. .++.+|++++.|+.|++||++.+ .++..+.+
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g----------- 706 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG----------- 706 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC-----------
Confidence 999999999875 46788999999999999999753 34555554
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...+.+++|+|++.+|++|+ .|+.|++|+..
T Consensus 707 -----------h~~~i~~v~~s~~~~~lasgs--~D~~v~iw~~~ 738 (793)
T PLN00181 707 -----------HTNVKNFVGLSVSDGYIATGS--ETNEVFVYHKA 738 (793)
T ss_pred -----------CCCCeeEEEEcCCCCEEEEEe--CCCEEEEEECC
Confidence 888899999999999999999 89999999964
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-31 Score=205.15 Aligned_cols=229 Identities=22% Similarity=0.382 Sum_probs=183.2
Q ss_pred eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-----CC-----------------------
Q 042146 9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-----DS----------------------- 60 (262)
Q Consensus 9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~----------------------- 60 (262)
..+.......+.+|..+++-..|+|.|.|+|+|...|.|||||....... ..
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 34455667888999999999999999999999999999999997652110 00
Q ss_pred ----------CCCCCCccccCCccccccce----------------eEEEEecCCCccceecccCCcceEEEEEeCCCCE
Q 042146 61 ----------TPPSPLQKFTGHEQGISDLA----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114 (262)
Q Consensus 61 ----------~~~~~~~~~~~~~~~v~~~~----------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (262)
..+...-++.+|...+.++. .|.+|+-..-+...++..|..-|+|+.|+|||.+
T Consensus 125 rerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~ 204 (603)
T KOG0318|consen 125 RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR 204 (603)
T ss_pred ccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe
Confidence 00111111222222222111 3344443333344456678899999999999999
Q ss_pred EEeecCCCeEEEEECCCCeeeeeee---cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146 115 IVSDTFNETIRIWDIKTGKCLKVLP---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------ 173 (262)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------ 173 (262)
+++++.||+|.+||-.+++.+..+. +|.+.|.+++|+||+..+++++.|.++++||+..
T Consensus 205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv 284 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV 284 (603)
T ss_pred EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence 9999999999999999999999987 8999999999999999999999999999999876
Q ss_pred ---CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146 174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN 250 (262)
Q Consensus 174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 250 (262)
-....|++-+.+|.|.+++...+.++..+.+ |...|++++.+|++++|++|+ .
T Consensus 285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G----------------------HnK~ITaLtv~~d~~~i~Sgs--y 340 (603)
T KOG0318|consen 285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG----------------------HNKSITALTVSPDGKTIYSGS--Y 340 (603)
T ss_pred EEEEeCCeEEEEEcCcEEEEecccCCChhheecc----------------------cccceeEEEEcCCCCEEEeec--c
Confidence 1356788999999999999999988888887 999999999999999999999 9
Q ss_pred CCcEEEEeecc
Q 042146 251 DRTMKIWTQEK 261 (262)
Q Consensus 251 d~~i~iw~~~~ 261 (262)
||.|.-|+...
T Consensus 341 DG~I~~W~~~~ 351 (603)
T KOG0318|consen 341 DGHINSWDSGS 351 (603)
T ss_pred CceEEEEecCC
Confidence 99999999854
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=205.86 Aligned_cols=151 Identities=31% Similarity=0.585 Sum_probs=135.2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
+|++||.++++++.++.+|...|..+.|+ ..++++++.|.++.+||+.... +.+.+.+|...|+.+.|+ .+++
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyI 333 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYI 333 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceE
Confidence 55666888999999999999999999997 6789999999999999997653 345567999999999997 5699
Q ss_pred EEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146 158 VTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
++++.|.+|++|++.+ -.++++++|+.|.+|++||++.|.+++.+++
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG--------------- 398 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG--------------- 398 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhc---------------
Confidence 9999999999999887 5789999999999999999999999999998
Q ss_pred CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|++-|.++.|. .+.+++|+ .||+|++||+..
T Consensus 399 -------HEeLvRciRFd--~krIVSGa--YDGkikvWdl~a 429 (499)
T KOG0281|consen 399 -------HEELVRCIRFD--NKRIVSGA--YDGKIKVWDLQA 429 (499)
T ss_pred -------hHHhhhheeec--Cceeeecc--ccceEEEEeccc
Confidence 88899999997 67799999 899999999863
No 39
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.1e-31 Score=214.59 Aligned_cols=194 Identities=21% Similarity=0.361 Sum_probs=156.3
Q ss_pred ecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 18 TLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
.+.+|.++|++++|+| ++++|++|+.|++|++||+...... .....++..+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~----------------------------~~~~~~l~~L 121 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT----------------------------QNISDPIVHL 121 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc----------------------------cccCcceEEe
Confidence 4679999999999999 8899999999999999987542110 0012345667
Q ss_pred ccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146 97 IGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 173 (262)
.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..|...|.+++|+|++.+|++++.|++|++||+++
T Consensus 122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 8899999999999975 6899999999999999999999999999999999999999999999999999999999986
Q ss_pred -------------------CCccEEEEEc----CCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 174 -------------------PNGKFILVGT----LDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 174 -------------------~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
+++..+++++ .|+.|++||+++... +.....+ ...
T Consensus 202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d---------------------~~~ 260 (493)
T PTZ00421 202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD---------------------QSS 260 (493)
T ss_pred EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC---------------------CCC
Confidence 2334555543 478999999987543 2222210 234
Q ss_pred ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 230 PVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+....|+|++.+|++++. .|+.|++|++.+
T Consensus 261 ~~~~~~~d~d~~~L~lggk-gDg~Iriwdl~~ 291 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSK-GEGNIRCFELMN 291 (493)
T ss_pred ceEEEEEcCCCCEEEEEEe-CCCeEEEEEeeC
Confidence 5666789999999998873 389999999975
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=208.79 Aligned_cols=206 Identities=25% Similarity=0.469 Sum_probs=176.1
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------eEEEEe
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TIRLWD 86 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~i~v~d 86 (262)
-+.+|..+.|.|+|+.|++|+..|-+.+|+... ......+..|...|..+. .|++|+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 456899999999999999999999999997633 222223344444444333 899999
Q ss_pred cCCCccceeccc-CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146 87 VPTATSLKTLIG-HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165 (262)
Q Consensus 87 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 165 (262)
.... .++.++. |...|.+++|+|+...+++++.||+|+|||....+..+.+.+|.-.|.+++|+|...++++++.|..
T Consensus 167 pnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 167 PNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred cchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence 8644 4444444 4489999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 166 YRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 166 i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
|++||.++ +++++|++++.|..++++|+++.+.+..+++
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~--------------------- 304 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG--------------------- 304 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc---------------------
Confidence 99999998 7889999999999999999999899999988
Q ss_pred ccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146 226 SHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 226 ~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|+..|+++.|+|- ..+|.+|+ .||.|..|.+.
T Consensus 305 -Hkkdv~~~~WhP~~~~lftsgg--~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 305 -HKKDVTSLTWHPLNESLFTSGG--SDGSVVHWVVG 337 (464)
T ss_pred -chhhheeeccccccccceeecc--CCCceEEEecc
Confidence 9999999999995 55777788 79999999875
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.2e-31 Score=201.10 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=191.5
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccccCCcc-cc-
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKFTGHEQ-GI- 76 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~-~v- 76 (262)
.|+.+..|+ ..+....+..|...+..+.|+|++++|++++.||.|++|++.......... ...+..+..... .+
T Consensus 29 ~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (289)
T cd00200 29 GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108 (289)
T ss_pred cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence 477777775 445677888999999999999999999999999999999997642211111 111111111111 11
Q ss_pred --cc-ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146 77 --SD-LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 77 --~~-~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (262)
.. .+.+.+||+.+++....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|+
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 188 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC
Confidence 11 348999999988888888889999999999999999999888999999999999888888889999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
++.+++++.++.+++||++. +++.++++++.+|.|++||+.+++....+..
T Consensus 189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--------- 259 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--------- 259 (289)
T ss_pred cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc---------
Confidence 99999999999999999874 5677888888899999999998888888775
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
|...|.+++|+|+++.|++++ .||.|++|+
T Consensus 260 -------------~~~~i~~~~~~~~~~~l~~~~--~d~~i~iw~ 289 (289)
T cd00200 260 -------------HTNSVTSLAWSPDGKRLASGS--ADGTIRIWD 289 (289)
T ss_pred -------------cCCcEEEEEECCCCCEEEEec--CCCeEEecC
Confidence 788999999999999999999 899999996
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.3e-31 Score=201.04 Aligned_cols=222 Identities=37% Similarity=0.665 Sum_probs=183.4
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCcc--ccCCcccc---ccceeEEEEecC
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQK--FTGHEQGI---SDLATIRLWDVP 88 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~--~~~~~~~v---~~~~~i~v~d~~ 88 (262)
++++++|.++|++++|+|++++|++++.||.+++|++......... ....... +......+ ...+.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 4577899999999999999999999999999999998764321111 1111111 11111111 123489999999
Q ss_pred CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
+++.+..+..|...+.++.|+|+++++++++.+|.|.+||+++++....+..|...+.+++|+|++.++++++.++.+++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 88888888889999999999999889999888999999999989888888889999999999999888888888999999
Q ss_pred EeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146 169 LDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR 228 (262)
Q Consensus 169 ~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (262)
||++. ++++.+++++.++.|++||++.++.+..+.. |.
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----------------------~~ 219 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG----------------------HE 219 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh----------------------cC
Confidence 99874 6777899999999999999999888887755 77
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+.++.|+|++.++++++ .||.|++|++..
T Consensus 220 ~~i~~~~~~~~~~~~~~~~--~~~~i~i~~~~~ 250 (289)
T cd00200 220 NGVNSVAFSPDGYLLASGS--EDGTIRVWDLRT 250 (289)
T ss_pred CceEEEEEcCCCcEEEEEc--CCCcEEEEEcCC
Confidence 8999999999988888887 799999999863
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-32 Score=218.35 Aligned_cols=213 Identities=27% Similarity=0.504 Sum_probs=186.7
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------e
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------T 81 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~ 81 (262)
..++..+..|..++|+|...+++++-..|.|++||..- ...+..|..|.++|..+. .
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCCeEEecCCccE
Confidence 34556678899999999999999999999999998754 333445555555555444 8
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (262)
|+||+..+.+++.++.+|-+.|..+.||+..++++++|.|.+|+||+..+++++..+.+|...|.|..|+|....++++|
T Consensus 75 IkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 75 IKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred EEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCC-------------------------------------------------CCccEEEEEcCCCeEEEEe
Q 042146 162 YDGLYRILDAST-------------------------------------------------PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 162 ~dg~i~~~d~~~-------------------------------------------------~~~~~l~~~~~dg~i~i~d 192 (262)
.|.+|++||+.. |.-+.+++|+.|..|++|.
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 234 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence 999999999765 5558899999999999998
Q ss_pred cCCCc--eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 193 YSTRK--ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 193 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+...+ .+.+..+ |...|.++-|+|...++++.| +|++|+|||+++
T Consensus 235 mnetKaWEvDtcrg----------------------H~nnVssvlfhp~q~lIlSns--EDksirVwDm~k 281 (1202)
T KOG0292|consen 235 MNETKAWEVDTCRG----------------------HYNNVSSVLFHPHQDLILSNS--EDKSIRVWDMTK 281 (1202)
T ss_pred eccccceeehhhhc----------------------ccCCcceEEecCccceeEecC--CCccEEEEeccc
Confidence 87543 2333444 899999999999999999999 999999999975
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-31 Score=185.14 Aligned_cols=230 Identities=26% Similarity=0.382 Sum_probs=195.3
Q ss_pred ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------eE
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TI 82 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~i 82 (262)
.+++|+.+++.+.|+.+|.+|.+++.|.+..+| ....+..+-.+.+|...|.++. ++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw--------~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVW--------YSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEE--------EecCCceeeeecCCCceEEEEEecCCcceeeecccccee
Confidence 468999999999999999999999999999999 6677778888888888876655 89
Q ss_pred EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-----CCeEEEEECC-------CCeeeeeeecCCCCeeeEEE
Q 042146 83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-----NETIRIWDIK-------TGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~ 150 (262)
++||+++|+.+.+++ ...+|..+.|+++|++++.... .+.|.++|++ ...+...+..+.+.++.+-|
T Consensus 77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 999999999999887 5678999999999999887654 4679999998 44567788888899999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
.|-+..+++|..||.|..||+++ ++..++++++.|.+-++||.++.++++++....+ +
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P-v 234 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP-V 234 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc-c
Confidence 99999999999999999999986 7899999999999999999999999988875332 2
Q ss_pred eEEEEEEecCCCeeEEc------------------------------------cccceEEEEEcCCCCeEEEeeecCCCc
Q 042146 210 YCISSTFSVTNGKYIVS------------------------------------HRDPVISVASHPAKNIIASGALDNDRT 253 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~------------------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~ 253 (262)
.+ .++++....++.+ |-++|++++|||+|+..++|+ +||.
T Consensus 235 N~--aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG--EDG~ 310 (327)
T KOG0643|consen 235 NT--AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG--EDGY 310 (327)
T ss_pred cc--eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC--CCce
Confidence 22 2233333333332 999999999999999999999 9999
Q ss_pred EEEEeecc
Q 042146 254 MKIWTQEK 261 (262)
Q Consensus 254 i~iw~~~~ 261 (262)
|++.-+++
T Consensus 311 VR~h~Fd~ 318 (327)
T KOG0643|consen 311 VRLHHFDS 318 (327)
T ss_pred EEEEEecc
Confidence 99976654
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=191.93 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=172.9
Q ss_pred cceecccCcCceEEEEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146 15 LTQTLNGHLRAVSYVKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----------- 80 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------- 80 (262)
...+-.+|+.+|-.++||| +|-+|++++.|+.=.+- ....+.-+-.+.+|...+....
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr--------~g~tgdwigtfeghkgavw~~~l~~na~~aasa 77 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR--------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASA 77 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhc--------cCCCCCcEEeeeccCcceeeeecCchhhhhhhh
Confidence 3456679999999999986 78899999999875544 3445556667778877764433
Q ss_pred ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCC
Q 042146 81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
+-++||.-++..+..+. |+..|.+++|+.|.++|++|+.+..++|||++.. .+..++.+|.+.|..+.|....+
T Consensus 78 aadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred cccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence 78899999999999886 8999999999999999999999999999999764 45677889999999999999888
Q ss_pred EEEEEeCCCeEEEEeCCC-----------------------------------------------------------CCc
Q 042146 156 MIVTSSYDGLYRILDAST-----------------------------------------------------------PNG 176 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~-----------------------------------------------------------~~~ 176 (262)
.+++++.|++|++||.++ |+.
T Consensus 157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK 236 (334)
T ss_pred eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence 999999999999999987 344
Q ss_pred cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 177 KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
..+++|++|+.++.||..+++.+..+ ..+|.++|.|+.|+|+|...++|| +||+|+|
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~---------------------nkgh~gpVhcVrFSPdGE~yAsGS--EDGTirl 293 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSY---------------------NKGHFGPVHCVRFSPDGELYASGS--EDGTIRL 293 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeec---------------------ccCCCCceEEEEECCCCceeeccC--CCceEEE
Confidence 44445555555555555544444443 123899999999999999999999 9999999
Q ss_pred Eeecc
Q 042146 257 WTQEK 261 (262)
Q Consensus 257 w~~~~ 261 (262)
|.+..
T Consensus 294 WQt~~ 298 (334)
T KOG0278|consen 294 WQTTP 298 (334)
T ss_pred EEecC
Confidence 98753
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=7.5e-31 Score=211.88 Aligned_cols=224 Identities=29% Similarity=0.505 Sum_probs=189.8
Q ss_pred CCCCceeeecc--ccccee-cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc-
Q 042146 2 SSDRSLESFRP--YTLTQT-LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS- 77 (262)
Q Consensus 2 s~d~~i~~~~~--~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~- 77 (262)
+.|++|..|+. ...+.. +.+|.+.|.++++..-+.+|++|+.|.++++||+... .....+.+|...+.
T Consensus 225 s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--------~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--------ECTHSLQGHTSSVRC 296 (537)
T ss_pred CCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--------cEEEEecCCCceEEE
Confidence 35678877764 334445 9999999999999877889999999999999976554 33444444444433
Q ss_pred ------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146 78 ------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV 145 (262)
Q Consensus 78 ------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 145 (262)
...+|++|+++++..+..+.+|.++|.++..+ +.++++|+.|++|++||++++++++.+.+|...|
T Consensus 297 ~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 297 LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred EEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 33399999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 206 (262)
.++.+.+. ..+++|+.|++|++||++. ..+++|++++.|+.|++||..++++++.+.+.
T Consensus 375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~- 452 (537)
T KOG0274|consen 375 YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR- 452 (537)
T ss_pred EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC-
Confidence 99988765 8999999999999999987 45789999999999999999999999999862
Q ss_pred CceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 207 NSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|..+++. ...+++++ .||.+++||++.
T Consensus 453 --------------------~~~~v~~l~~~--~~~il~s~--~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 --------------------HVGGVSALALG--KEEILCSS--DDGSVKLWDLRS 483 (537)
T ss_pred --------------------CcccEEEeecC--cceEEEEe--cCCeeEEEeccc
Confidence 34567777766 56777888 899999999875
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.2e-31 Score=194.29 Aligned_cols=228 Identities=27% Similarity=0.450 Sum_probs=189.0
Q ss_pred CCCCceeeec-ccccceecccCcCceEEEEEccC---CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHD---GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
++||.++.|. .++..+++.+|.++|.+++|.-. ...|++++.|.++++|..+..... ........+|...|.
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~----~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK----VKALKVCRGHKRSVD 197 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh----hhHHhHhccccccee
Confidence 5899999996 67899999999999998888543 336999999999999987653322 122223336766665
Q ss_pred cce---------------eEEEEecC-------------------------CCccceecccCCcceEEEEEeCCCCEEEe
Q 042146 78 DLA---------------TIRLWDVP-------------------------TATSLKTLIGHTNYVFCINFNPQSNRIVS 117 (262)
Q Consensus 78 ~~~---------------~i~v~d~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 117 (262)
++. .|++|+.+ ++.++.++.+|.++|.++.|++ ...+++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence 544 89999932 1234556789999999999997 778999
Q ss_pred ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------
Q 042146 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------ 173 (262)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------ 173 (262)
++.|.+|+.||++++..+..+.. ...++++.++|..++|++|+.|..+++||.|.
T Consensus 277 ~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred ecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 99999999999999999888864 67899999999999999999999999999987
Q ss_pred CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~ 252 (262)
.+...|++|+.|+++++||+++.+ ++..+.+ |.+.|.++.|. ++..+++|| .|.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~----------------------h~DKvl~vdW~-~~~~IvSGG--aD~ 410 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG----------------------HNDKVLSVDWN-EGGLIVSGG--ADN 410 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCcceeecc----------------------CCceEEEEecc-CCceEEecc--Ccc
Confidence 456679999999999999999877 8888877 88999999998 566899999 899
Q ss_pred cEEEEeec
Q 042146 253 TMKIWTQE 260 (262)
Q Consensus 253 ~i~iw~~~ 260 (262)
+|+|++-.
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998753
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-31 Score=185.85 Aligned_cols=210 Identities=25% Similarity=0.399 Sum_probs=170.7
Q ss_pred CCCCceeeecc----cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|.|.++-+|+. ++.+.+++||+..|.|++|+++|++||+++.|+.|-||..+..
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---------------------- 137 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED---------------------- 137 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC----------------------
Confidence 56788888864 5889999999999999999999999999999999999966431
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC---CCeeeeeeecCCCCeeeEEEccCC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK---TGKCLKVLPAHSDPVTAIDFNRDG 154 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~ 154 (262)
+.-++...+++|...|..+.|+|...+|++++.|.+|++|.-. .-.++.++.+|...|.+++|+|.|
T Consensus 138 ----------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 138 ----------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred ----------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 1234666788999999999999999999999999999999866 236788999999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCC-------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146 155 TMIVTSSYDGLYRILDAST-------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN 220 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~-------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (262)
..|++++.|+++++|-... | +...|++++.|+.|++|.....-.-..+....
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~-------------- 273 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLA-------------- 273 (312)
T ss_pred ceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHH--------------
Confidence 9999999999999998544 1 24679999999999999765321111110000
Q ss_pred CeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146 221 GKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 221 ~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.....|...|+++.|+|. ..+|++++ .||.|++|.+.
T Consensus 274 -~~~~aHe~dVNsV~w~p~~~~~L~s~~--DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 -KKEGAHEVDVNSVQWNPKVSNRLASGG--DDGIVNFWELE 311 (312)
T ss_pred -hhhcccccccceEEEcCCCCCceeecC--CCceEEEEEec
Confidence 000118889999999995 77899998 89999999985
No 49
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-30 Score=185.14 Aligned_cols=227 Identities=24% Similarity=0.437 Sum_probs=186.7
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----CCCCccccCCcccccc-----ceeE
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQKFTGHEQGISD-----LATI 82 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~v~~-----~~~i 82 (262)
.+++.+.+..-.+.|+++.|+++|.+|++++.|.+++|||........... +....++..+...+.. ..+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 456667777778899999999999999999999999999987765443222 2233344444333211 2289
Q ss_pred EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146 83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
+..++.+.+.++-+.+|...|++|+.+|-+..+++++.|++|++||++..++...+.... -..++|.|+|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecC
Confidence 999999999999999999999999999988999999999999999999888777665433 346789999999999998
Q ss_pred CCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 163 DGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 163 dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
...|++||+|+ ++|++++.++..+.+++.|.-+|....++..+.+.
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~--------- 231 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA--------- 231 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC---------
Confidence 88999999998 89999999999999999999999999998875432
Q ss_pred cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..--...+|+|+++++++|+ +||+|.+|+++.
T Consensus 232 ----------~~~~~~a~ftPds~Fvl~gs--~dg~i~vw~~~t 263 (311)
T KOG1446|consen 232 ----------GNLPLSATFTPDSKFVLSGS--DDGTIHVWNLET 263 (311)
T ss_pred ----------CCcceeEEECCCCcEEEEec--CCCcEEEEEcCC
Confidence 11125778999999999999 899999999864
No 50
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=5.1e-30 Score=207.82 Aligned_cols=208 Identities=18% Similarity=0.301 Sum_probs=159.3
Q ss_pred CCceeeeccc--ccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 4 DRSLESFRPY--TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 4 d~~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
++.+..|+.. ..+..+.+|.++|.+++|+|+ +.+||+|+.|++|++||+....... .
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~----~---------------- 112 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV----K---------------- 112 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc----c----------------
Confidence 4556666533 356788999999999999997 7899999999999999886421000 0
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (262)
....++..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++
T Consensus 113 -------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 113 -------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred -------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 001234456789999999999998875 5789999999999999998777775 6678999999999999999
Q ss_pred EeCCCeEEEEeCCC-------------------------CCccEEEEEcCCC----eEEEEecCC-CceeeEEeccCCce
Q 042146 160 SSYDGLYRILDAST-------------------------PNGKFILVGTLDN----TLRLWNYST-RKILKTYSGYTNSK 209 (262)
Q Consensus 160 ~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~ 209 (262)
++.|+.|++||+++ +++.+|++++.++ .|+|||++. ++++..+..+.
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--- 261 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--- 261 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---
Confidence 99999999999986 2446788877664 799999995 55565543211
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.+.+......+++.++++|+ .|++|++|++..
T Consensus 262 -----------------~~~~L~p~~D~~tg~l~lsGk--GD~tIr~~e~~~ 294 (568)
T PTZ00420 262 -----------------ASAPLIPHYDESTGLIYLIGK--GDGNCRYYQHSL 294 (568)
T ss_pred -----------------CccceEEeeeCCCCCEEEEEE--CCCeEEEEEccC
Confidence 233334444456688999998 899999999854
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=3.5e-30 Score=185.82 Aligned_cols=242 Identities=24% Similarity=0.457 Sum_probs=188.1
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC----C-----CCC-CCCCccccCCccccccce------
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF----D-----STP-PSPLQKFTGHEQGISDLA------ 80 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~----~-----~~~-~~~~~~~~~~~~~v~~~~------ 80 (262)
..+..|.+++++.+|+|||.++|+|+.|-.|+|.|++..-.. + ... ...+..+-.|...+..+.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 345679999999999999999999999999999998732110 0 111 122344555655555444
Q ss_pred ---------eEEEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCee
Q 042146 81 ---------TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVT 146 (262)
Q Consensus 81 ---------~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~ 146 (262)
+|+++|.......+.++ ....+|.++.|+|.|.++++|..-.++++||+++.++.... ..|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 89999987654433332 24578999999999999999999999999999998875543 45889999
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 147 AIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
++.+++.+++.++++.||.|++||--+ .+++|+++.+.|..+++|.+.+++++..+.+
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 999999999999999999999999654 6899999999999999999999999999886
Q ss_pred cCCc---eeEEEEEEecCCCe------------------------eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 205 YTNS---KYCISSTFSVTNGK------------------------YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 205 ~~~~---~~~~~~~~~~~~~~------------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
.... .......|...+.+ +-.+|.+.++.+.-||.+..+.|++ .|-.+|+|
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs--dD~raRFW 423 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS--DDFRARFW 423 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec--ccceeeee
Confidence 5221 11112222222222 2234999999999999999999999 89999999
Q ss_pred eec
Q 042146 258 TQE 260 (262)
Q Consensus 258 ~~~ 260 (262)
--.
T Consensus 424 yrr 426 (430)
T KOG0640|consen 424 YRR 426 (430)
T ss_pred eec
Confidence 653
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.9e-30 Score=181.18 Aligned_cols=230 Identities=24% Similarity=0.359 Sum_probs=180.5
Q ss_pred eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----CCC---CccccCCcc---cc
Q 042146 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSP---LQKFTGHEQ---GI 76 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~---~~~~~~~~~---~v 76 (262)
+..+..+.. +.+++|.++|.+++|+.+|..|++|+.|+++.+|+++......... ... +...+.+.. ..
T Consensus 5 ~~~~~~l~~-r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 5 LPKFKSLKR-RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred ccchhhhhh-HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 333444333 6778999999999999999999999999999999987642211100 001 111111111 12
Q ss_pred ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC------------------------
Q 042146 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG------------------------ 132 (262)
Q Consensus 77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------------ 132 (262)
.....|++||++.+++........+.+ -+.|+|+|++++++..|..|...|.++.
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 233399999999999988876544444 5789999999999999999998888653
Q ss_pred -----------------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CC
Q 042146 133 -----------------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PN 175 (262)
Q Consensus 133 -----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~ 175 (262)
+++..+++|.....|+.|+|+|++|++|+.|..+.+||+.. .+
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 23445668999999999999999999999999999999876 79
Q ss_pred ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC----
Q 042146 176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND---- 251 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d---- 251 (262)
|++|++|++|-.|-|=++++|..+..++ +.++...++|+|...+||.++.|.|
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~-----------------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~ 299 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIP-----------------------CEGPTFTVAWHPKRPLLAYACDDKDGDSN 299 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEee-----------------------ccCCceeEEecCCCceeeEEecCCCCccc
Confidence 9999999999999999999999999998 8899999999999999999884443
Q ss_pred ---CcEEEEeecc
Q 042146 252 ---RTMKIWTQEK 261 (262)
Q Consensus 252 ---~~i~iw~~~~ 261 (262)
|.+++|-+.+
T Consensus 300 reag~vKiFG~~~ 312 (313)
T KOG1407|consen 300 REAGTVKIFGLSN 312 (313)
T ss_pred cccceeEEecCCC
Confidence 5788886654
No 53
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-30 Score=185.44 Aligned_cols=188 Identities=21% Similarity=0.391 Sum_probs=162.1
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
+.+...++.|.++|++++. +++++|+||.|-+|+|||+ .+...
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm-----------------------------------~k~~q 75 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDM-----------------------------------RKRKQ 75 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEec-----------------------------------cchhh
Confidence 3457788999999999998 5889999999999888855 45566
Q ss_pred ceecccCCcceEEEEEeCCCC--EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 93 LKTLIGHTNYVFCINFNPQSN--RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-.++..+++|.+.|+.++.+|.+++-++.+.|+.+++|+
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN 155 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence 677778999999999998654 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCC----------------------------------------------------------CCccEEEEEcCCCeEEEEe
Q 042146 171 AST----------------------------------------------------------PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 171 ~~~----------------------------------------------------------~~~~~l~~~~~dg~i~i~d 192 (262)
+-. .++.+|++|..|+.|.+||
T Consensus 156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred hhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEec
Confidence 755 3566777777777777777
Q ss_pred cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE--cCCCCeEEEeeecCCCcEEEEeecc
Q 042146 193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS--HPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.....+...+.+ |..+|.++.+ .|++.+|+|+| .||.|+|||++.
T Consensus 236 ~ds~~~~~~~~A----------------------H~~RVK~i~~~~~~~~~~lvTaS--SDG~I~vWd~~~ 282 (362)
T KOG0294|consen 236 TDSDTPLTEFLA----------------------HENRVKDIASYTNPEHEYLVTAS--SDGFIKVWDIDM 282 (362)
T ss_pred cCCCccceeeec----------------------chhheeeeEEEecCCceEEEEec--cCceEEEEEccc
Confidence 777666666666 8899999985 57789999999 999999999874
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-30 Score=183.43 Aligned_cols=199 Identities=20% Similarity=0.379 Sum_probs=166.6
Q ss_pred CCceeeecc-----cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 4 DRSLESFRP-----YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 4 d~~i~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
.|.+.+.+. .+..+.+. -...+..++|+++ .+.+++++.||++++||+..
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~----------------------- 92 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM----------------------- 92 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCC-----------------------
Confidence 455555543 12333343 3577999999996 56789999999999997532
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGT 155 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 155 (262)
...++..++.|+.+|.++.|++ .+..++++|.|++|++|+....+.+.++.+|..-|...+|+| .++
T Consensus 93 -----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 93 -----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN 161 (311)
T ss_pred -----------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC
Confidence 3457888999999999999999 666788889999999999999999999999999999999999 778
Q ss_pred EEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEEE
Q 042146 156 MIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCIS 213 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~ 213 (262)
.+++++.|+++++||++. -+...|++|+.|+.|+.||+++.+ ++..+.+
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g--------- 232 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG--------- 232 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC---------
Confidence 999999999999999987 467889999999999999999754 5566655
Q ss_pred EEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|.-.|+.+.|||. ..+|++++ .|-+++||+...
T Consensus 233 -------------h~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~ 266 (311)
T KOG0277|consen 233 -------------HGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPER 266 (311)
T ss_pred -------------CceEEEEEecCcchhhHhhhcc--ccceEEeccccc
Confidence 8899999999997 46889999 899999999874
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.9e-30 Score=176.78 Aligned_cols=220 Identities=23% Similarity=0.430 Sum_probs=186.9
Q ss_pred CCCceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 3 SDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 3 ~d~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
+|++++.|.|.+ +++++.+|..+|..++.+.|...|++++.|+.+.+||+.+. +....+.+|...+..+.
T Consensus 37 sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--------KVDRRFRGHLAQVNTVR 108 (307)
T ss_pred CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC--------eeeeecccccceeeEEE
Confidence 689999998754 89999999999999999999999999999999999987654 44455666665554444
Q ss_pred ---------------eEEEEecCC--CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC
Q 042146 81 ---------------TIRLWDVPT--ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143 (262)
Q Consensus 81 ---------------~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (262)
.+++||.++ .++++.+......|.++.++ +..+++|+.||+++.||++.|+...-+. ..
T Consensus 109 fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~ 184 (307)
T KOG0316|consen 109 FNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GH 184 (307)
T ss_pred ecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CC
Confidence 899999875 46788888888999999886 6789999999999999999998766654 56
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
||+++.|+++++..++++.|+++++.|-.+ .....+++|++||.+++||+.....+..
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 899999999999999999999999999776 4567899999999999999999999988
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccc-eEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDP-VISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
++. +... |.+++++|....|+++. ++.+..|--
T Consensus 265 ~~~----------------------~~~v~v~dl~~hp~~~~f~~A~---~~~~~~~~~ 298 (307)
T KOG0316|consen 265 LSV----------------------VSTVIVTDLSCHPTMDDFITAT---GHGDLFWYQ 298 (307)
T ss_pred ecc----------------------CCceeEEeeecccCccceeEec---CCceeceee
Confidence 886 5555 89999999998888885 566777753
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-29 Score=198.48 Aligned_cols=225 Identities=23% Similarity=0.367 Sum_probs=182.0
Q ss_pred ceeeecc--cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---
Q 042146 6 SLESFRP--YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA--- 80 (262)
Q Consensus 6 ~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 80 (262)
.+..|.. .........+...|+++.|+++|.+|++|..+|.|.|||............. |...+.+++
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------h~~rvg~laW~~ 270 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------HASRVGSLAWNS 270 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-------cCceeEEEeccC
Confidence 4555542 3333333444889999999999999999999999999998765443332221 333332222
Q ss_pred ----------eEEEEecCCCcccee-cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146 81 ----------TIRLWDVPTATSLKT-LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID 149 (262)
Q Consensus 81 ----------~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 149 (262)
.|..+|++..+.... +.+|...|..++|++++.++|+|+.|+.+.|||.....++..+..|...|.+++
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 889999988776665 889999999999999999999999999999999988888999999999999999
Q ss_pred Ecc-CCCEEEEEe--CCCeEEEEeCCC-------------------CCccEEEE--EcCCCeEEEEecCCCceeeEEecc
Q 042146 150 FNR-DGTMIVTSS--YDGLYRILDAST-------------------PNGKFILV--GTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 150 ~~~-~~~~l~~~~--~dg~i~~~d~~~-------------------~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
|+| ...+||+|+ .|++|++||... +..+.|++ |..+..|.||+..+.+.+..+.+
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g- 429 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG- 429 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-
Confidence 999 667888875 799999999887 33433444 34667899999999888888887
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|..+|..++++|+|..+++|+ .|.++++|++-.
T Consensus 430 ---------------------H~~RVl~la~SPdg~~i~t~a--~DETlrfw~~f~ 462 (484)
T KOG0305|consen 430 ---------------------HTSRVLYLALSPDGETIVTGA--ADETLRFWNLFD 462 (484)
T ss_pred ---------------------CcceeEEEEECCCCCEEEEec--ccCcEEeccccC
Confidence 999999999999999999999 899999999743
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-30 Score=199.33 Aligned_cols=209 Identities=22% Similarity=0.398 Sum_probs=171.8
Q ss_pred CceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC--CCCCCCccccCCcccc-----c
Q 042146 5 RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS--TPPSPLQKFTGHEQGI-----S 77 (262)
Q Consensus 5 ~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v-----~ 77 (262)
-.||++++..+++.++.-.-||++..|-+..+++++|+.|..|++|++.+...... ..+..+..+..|+... +
T Consensus 37 V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS 116 (794)
T KOG0276|consen 37 VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS 116 (794)
T ss_pred eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence 35677788999999999999999999999999999999999999998766443321 1223333333333222 1
Q ss_pred cceeEEEEecCC-CccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-
Q 042146 78 DLATIRLWDVPT-ATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG- 154 (262)
Q Consensus 78 ~~~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 154 (262)
....|++||.+. ..+.+++.+|...|.+++|+| |.+.+++++-|++|+||.+.+..+..++++|...|+|+.|-+.|
T Consensus 117 DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd 196 (794)
T KOG0276|consen 117 DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD 196 (794)
T ss_pred CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC
Confidence 222899999976 457788999999999999999 88899999999999999999999999999999999999999854
Q ss_pred -CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 155 -TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 155 -~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
.+|++|+.|.++++||..+ |.-+.+++|++||+++||+..+-++..++.-..+.++|++
T Consensus 197 kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 197 KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 5999999999999999876 6678999999999999999999888888876444444443
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=182.08 Aligned_cols=199 Identities=23% Similarity=0.393 Sum_probs=168.8
Q ss_pred CCCCceeeec---ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFR---PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
+-||+++.|. +-.+++.++.|..+|.++.|++. ++.++++|.|++|++|+.
T Consensus 80 ~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~------------------------- 134 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP------------------------- 134 (311)
T ss_pred ecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC-------------------------
Confidence 4699999996 55689999999999999999994 567888899999988854
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGT 155 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 155 (262)
..++.+.++.+|...|...+|+| .+++++++|.|+++++||++..-....+..|...+.++.|+. +.+
T Consensus 135 ----------~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 135 ----------NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred ----------CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence 45667788999999999999999 788999999999999999986444444889999999999998 778
Q ss_pred EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEE
Q 042146 156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCI 212 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~ 212 (262)
.+++|+.|+.|+.||++. .....|++++.|-+++|||...+. ++.+...
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-------- 276 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-------- 276 (311)
T ss_pred EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc--------
Confidence 999999999999999987 345679999999999999998544 4444443
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEee
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~ 259 (262)
|.+-+..+.|++. ..++|+++ =|+.++||+.
T Consensus 277 --------------HtEFv~g~Dws~~~~~~vAs~g--WDe~l~Vw~p 308 (311)
T KOG0277|consen 277 --------------HTEFVCGLDWSLFDPGQVASTG--WDELLYVWNP 308 (311)
T ss_pred --------------cceEEeccccccccCceeeecc--cccceeeecc
Confidence 7888899999984 56899999 4699999984
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.7e-29 Score=213.26 Aligned_cols=210 Identities=18% Similarity=0.279 Sum_probs=167.4
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
+.|++++.|+ ..+.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~------------------------- 606 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN------------------------- 606 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-------------------------
Confidence 3588988886 4567888999999999999997 78999999999999999664
Q ss_pred ceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe-eeeeeecCCCCeeeEEEccCCCE
Q 042146 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
++..+..+.. ...+.++.|++ ++.++++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+
T Consensus 607 ----------~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 607 ----------QGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred ----------CCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence 3344444443 35688999965 79999999999999999998765 466778899999999997 6789
Q ss_pred EEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 157 IVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
|++++.|++|++||++. +++.+|++|+.|+.|++|+.....++..+........
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 99999999999999862 5788999999999999999877665544432111000
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
.+.....+...|.+++|+|++..|++|+ .||.|+||++
T Consensus 755 ---------~~~~~~~~~~~V~~v~ws~~~~~lva~~--~dG~I~i~~~ 792 (793)
T PLN00181 755 ---------SGLEVDDASQFISSVCWRGQSSTLVAAN--STGNIKILEM 792 (793)
T ss_pred ---------cccccCCCCcEEEEEEEcCCCCeEEEec--CCCcEEEEec
Confidence 0001112667899999999999999999 8999999986
No 60
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.5e-30 Score=184.38 Aligned_cols=218 Identities=23% Similarity=0.397 Sum_probs=168.2
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC---------CCCCCCCCcccc---------------
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF---------DSTPPSPLQKFT--------------- 70 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~--------------- 70 (262)
.+..+++|.+.|++++|+.||++|||++.|++|++|++...... +...+..+...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578899999999999999999999999999999998753211 111110000000
Q ss_pred ---------------------------CCccccccce---------------eEEEEecCCCccceecccCCcceEEEEE
Q 042146 71 ---------------------------GHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108 (262)
Q Consensus 71 ---------------------------~~~~~v~~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 108 (262)
-|...+..++ .|.+|++. |+.+..+......-...++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 0000000000 89999997 8888888777777788899
Q ss_pred eCCCCEEEeecCCCeEEEEECC---CC-----eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------
Q 042146 109 NPQSNRIVSDTFNETIRIWDIK---TG-----KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------- 173 (262)
Q Consensus 109 ~~~~~~l~~~~~dg~i~vwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------- 173 (262)
+|+|+++++++..--|++|.+- .| +.+..+++|...|..++|+|++..+++.+.||++++||+..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999873 22 34567789999999999999999999999999999999765
Q ss_pred ------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 174 ------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 174 ------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
|+++.|+.+. ...+++|..++|+...+++.. |.+
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~---------------------h~~ 374 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI---------------------HST 374 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh---------------------hcC
Confidence 6777776654 346888888888776666531 899
Q ss_pred ceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 230 PVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
.|.+++|+|+|++++|+| |..+++..
T Consensus 375 ~Is~is~~~~g~~~atcG---dr~vrv~~ 400 (420)
T KOG2096|consen 375 TISSISYSSDGKYIATCG---DRYVRVIR 400 (420)
T ss_pred ceeeEEecCCCcEEeeec---ceeeeeec
Confidence 999999999999999996 78888865
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=197.64 Aligned_cols=210 Identities=20% Similarity=0.399 Sum_probs=175.6
Q ss_pred Cceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146 5 RSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI 82 (262)
Q Consensus 5 ~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i 82 (262)
|.+..|+ ...++.+.++|.+.|.+++.+||++.+++||.|.+|++||+.-..... ... -
T Consensus 434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~---gt~----------------~ 494 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP---GTQ----------------K 494 (888)
T ss_pred CceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC---ccc----------------c
Confidence 4454554 566788889999999999999999999999999999999874321100 000 0
Q ss_pred EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146 83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
++..+. ..+++ .-...|.|++++||+++|+++--|.+|+||-+.+.+....+.+|.-||.||..+||++++++|+.
T Consensus 495 k~lsl~---~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 495 KVLSLK---HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred eeeeec---cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence 000110 01111 23467999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 163 DGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 163 dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
|++|++|-+.- |....+.+++.|+.|+-||-...+.++.+.+
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~------------------ 632 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG------------------ 632 (888)
T ss_pred CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc------------------
Confidence 99999997654 7888999999999999999999999999998
Q ss_pred eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|+|++.+|+|.+++++| .|.+|++|....
T Consensus 633 ----H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~td 665 (888)
T KOG0306|consen 633 ----HHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERTD 665 (888)
T ss_pred ----chheeeeeEEcCCCCeEEecc--CCceeEeeeccC
Confidence 889999999999999999999 899999998764
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=199.39 Aligned_cols=228 Identities=21% Similarity=0.359 Sum_probs=191.0
Q ss_pred CCCCceeee--cccccceecccCcCceEEEEE-ccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 2 SSDRSLESF--RPYTLTQTLNGHLRAVSYVKF-SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 2 s~d~~i~~~--~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
.+|+.+..+ +..++.+.+-|..+.|.+|.| .|+.++||++++.+.+|+|++.+.... .+.+|...+.+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---------ii~GH~e~vlS 370 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---------IIPGHTEAVLS 370 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---------EEeCchhheee
Confidence 357777777 678888999999999999998 678899999999999999977653322 44555544433
Q ss_pred ce---------------eEEEEecCCCc----cceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee----
Q 042146 79 LA---------------TIRLWDVPTAT----SLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC---- 134 (262)
Q Consensus 79 ~~---------------~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---- 134 (262)
+. ++++|.++++. ++....+|...|.+++++. ...+|+++|.|+++++|++...+.
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 22 89999885443 3455678999999999987 456899999999999999976221
Q ss_pred -----eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEE
Q 042146 135 -----LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLR 189 (262)
Q Consensus 135 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~ 189 (262)
......|...|++++++|+.+++++||.|++.++|++.. +..+.+++++.|++|+
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 113356999999999999999999999999999999887 7788999999999999
Q ss_pred EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~ 262 (262)
||.+.+..++++|.+ |...|..+.|-.++..|++++ .||-|++|+++++
T Consensus 531 IW~is~fSClkT~eG----------------------H~~aVlra~F~~~~~qliS~~--adGliKlWnikt~ 579 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEG----------------------HTSAVLRASFIRNGKQLISAG--ADGLIKLWNIKTN 579 (775)
T ss_pred EEEeccceeeeeecC----------------------ccceeEeeeeeeCCcEEEecc--CCCcEEEEeccch
Confidence 999999999999998 889999999999999999999 9999999999753
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-28 Score=181.88 Aligned_cols=213 Identities=27% Similarity=0.440 Sum_probs=168.0
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------- 78 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------- 78 (262)
+.++++.+ .|..-|.++... ++.+++|+.||.+++||...... ..+.+|...+..
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~---------~~~~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI---------KTIVGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred CCCccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCCceE---------EEEecCCcceeeeEEEecCCccceE
Confidence 44444444 378888888876 77999999999999999865322 222333333221
Q ss_pred -----ceeEEEEecCCCccc----eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------------------
Q 042146 79 -----LATIRLWDVPTATSL----KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------------------ 131 (262)
Q Consensus 79 -----~~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------ 131 (262)
..++++|.++.+... +..++|+..|.++...+++..+++|+.|..|.+|+..+
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 227888888776543 33458999999999999999999999999999999321
Q ss_pred -------CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCC
Q 042146 132 -------GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLD 185 (262)
Q Consensus 132 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~d 185 (262)
+.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.. +..++|++|+.|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC
Confidence 235667789999999999998 77899999999999999887 778899999999
Q ss_pred CeEEEEecCCCc---eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 186 NTLRLWNYSTRK---ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 186 g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
..|++||.+++. ..+++.+ |...|.++.|+|... +|++++ .|+++++||++.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~g----------------------H~nwVssvkwsp~~~~~~~S~S--~D~t~klWDvRS 377 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIG----------------------HKNWVSSVKWSPTNEFQLVSGS--YDNTVKLWDVRS 377 (423)
T ss_pred CceeecCCCCCCCceeEEeeec----------------------chhhhhheecCCCCceEEEEEe--cCCeEEEEEecc
Confidence 999999999864 2344444 999999999999765 577888 899999999864
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=184.44 Aligned_cols=173 Identities=27% Similarity=0.541 Sum_probs=155.5
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
..+.|.|+.+. ...+++|..|++|+|||. .+..++..+.+|.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~-----------------------------------n~~~c~~~L~GHtG 238 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDK-----------------------------------NSLECLKILTGHTG 238 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecc-----------------------------------ccHHHHHhhhcCCC
Confidence 45779999984 456999999999888854 55678888999999
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------- 173 (262)
.|.|+.+. .+.+++|++|.+|++||.++++++.++-.|...|..+.|+ ..++++++.|.++.+||+.+
T Consensus 239 SVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 239 SVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred cEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH
Confidence 99999996 6699999999999999999999999999999999999998 45999999999999999987
Q ss_pred -------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC
Q 042146 174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK 240 (262)
Q Consensus 174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 240 (262)
-+.+++++++.|.+|++|++.+++.++++.+ |+..|.|+.+. +
T Consensus 315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g----------------------HkRGIAClQYr--~ 370 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG----------------------HKRGIACLQYR--D 370 (499)
T ss_pred HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhc----------------------ccccceehhcc--C
Confidence 4778999999999999999999999999998 88888888875 8
Q ss_pred CeEEEeeecCCCcEEEEeecc
Q 042146 241 NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 241 ~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+++++|+ .|.+|++|+++.
T Consensus 371 rlvVSGS--SDntIRlwdi~~ 389 (499)
T KOG0281|consen 371 RLVVSGS--SDNTIRLWDIEC 389 (499)
T ss_pred eEEEecC--CCceEEEEeccc
Confidence 9999999 899999999864
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=187.02 Aligned_cols=222 Identities=26% Similarity=0.498 Sum_probs=183.7
Q ss_pred CCCceeeec----ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 3 SDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 3 ~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
+|+.|..|+ ...++.++.+-.++|+++.|.++++++++++.|+.+++|++..... ...+.+|...+.+
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--------~~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--------RHTLSGHTDKVTA 266 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh--------hhhhcccccceee
Confidence 466677775 3347888889999999999999999999999999999998876433 2333334333332
Q ss_pred c---------------eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC
Q 042146 79 L---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143 (262)
Q Consensus 79 ~---------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (262)
+ .+|+.||+....+.+++- ....+..|... ...+++|-.|++|++||.++..+...+..+.
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg- 342 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG- 342 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-
Confidence 2 289999999888777654 23456666665 5668999999999999999999999987654
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKIL 199 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~ 199 (262)
.|+++..++++..+.+++.|.++.+.|++. |++.|+++|+.||.|+||++.++++.
T Consensus 343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 899999999999999999999999999987 99999999999999999999999999
Q ss_pred eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
..+.... ....|++++|+|.|..|++++ .++.+.+|.
T Consensus 423 ~~l~~s~--------------------s~~aI~s~~W~~sG~~Llsad--k~~~v~lW~ 459 (459)
T KOG0288|consen 423 KVLSLST--------------------SNAAITSLSWNPSGSGLLSAD--KQKAVTLWT 459 (459)
T ss_pred EEeccCC--------------------CCcceEEEEEcCCCchhhccc--CCcceEecC
Confidence 9887632 223699999999999999999 899999994
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.4e-29 Score=181.86 Aligned_cols=233 Identities=16% Similarity=0.250 Sum_probs=184.6
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC---Ccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG---HEQGI 76 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~---~~~~v 76 (262)
|.||.+..|+ ......++++|.+.|..+++.. ..+++++.|++|+.|.++..............-+.. .....
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~Fa 163 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFA 163 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccccccccc
Confidence 5799888886 5668999999999999999977 679999999999999876521100000001111111 12223
Q ss_pred ccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
++-..|.|||.+...++..+.-....|.++.|+| ....|+++..|+.|.+||++++++++.+. -...-+.++|+|.+.
T Consensus 164 TcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeaf 242 (433)
T KOG0268|consen 164 TCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAF 242 (433)
T ss_pred ccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCcccc
Confidence 3444799999999999999988888999999999 55677888899999999999999988774 355668899999888
Q ss_pred EEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146 156 MIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
.|++|+.|..++.||++. |.|+.+++|+-|.+|+||..+.+.....+...
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--------- 313 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--------- 313 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh---------
Confidence 999999999999999987 88999999999999999999877654444210
Q ss_pred EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
--..|.++.||.|.+++++|| +|+.|++|+-+
T Consensus 314 ------------RMq~V~~Vk~S~Dskyi~SGS--dd~nvRlWka~ 345 (433)
T KOG0268|consen 314 ------------RMQHVFCVKYSMDSKYIISGS--DDGNVRLWKAK 345 (433)
T ss_pred ------------hhheeeEEEEeccccEEEecC--CCcceeeeecc
Confidence 224689999999999999999 89999999864
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=193.14 Aligned_cols=154 Identities=28% Similarity=0.546 Sum_probs=127.3
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.+++|+..+.++++++... .+.+..|-|.++++++|...|.+.+||+.+...+.++++|.+.|++++.+||+..+++|
T Consensus 395 SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred cEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence 5666666666666665432 56666666666666666666667777766666666777899999999999999999999
Q ss_pred eCCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146 161 SYDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208 (262)
Q Consensus 161 ~~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 208 (262)
+.|.+|++||... ||+++|+++--|.+++||-+.+.+.--.+-+
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG---- 548 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG---- 548 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc----
Confidence 9999999999643 8999999999999999999998877777766
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|.-||.||..+||+++++||| .|.+|+||-++
T Consensus 549 ------------------HkLPV~smDIS~DSklivTgS--ADKnVKiWGLd 580 (888)
T KOG0306|consen 549 ------------------HKLPVLSMDISPDSKLIVTGS--ADKNVKIWGLD 580 (888)
T ss_pred ------------------cccceeEEeccCCcCeEEecc--CCCceEEeccc
Confidence 999999999999999999999 99999999764
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.7e-28 Score=200.18 Aligned_cols=207 Identities=24% Similarity=0.396 Sum_probs=164.8
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
.+.+...|.+.|+|+.|+|||++||+||.|+.|.||..... ......+..+. .-+.+..+...
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~---------~~~~~fgs~g~--------~~~vE~wk~~~ 123 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI---------GSGTVFGSTGG--------AKNVESWKVVS 123 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc---------CCccccccccc--------ccccceeeEEE
Confidence 44566789999999999999999999999999999976531 00000000000 11446677888
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~- 173 (262)
.+.+|...|..++|+|++.++++++.|++|.+|+.++.+.+..+++|.+.|..+.|.|-|++|++-+.|++|++|.+..
T Consensus 124 ~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 124 ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred EEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred -------------------------CCcc---------------------------------------------------
Q 042146 174 -------------------------PNGK--------------------------------------------------- 177 (262)
Q Consensus 174 -------------------------~~~~--------------------------------------------------- 177 (262)
|+|+
T Consensus 204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 3333
Q ss_pred ------------EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146 178 ------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS 245 (262)
Q Consensus 178 ------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 245 (262)
.+++|+.|++|-||.....+++...... ....|.+++|+|||..|+.
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l---------------------f~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL---------------------FNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh---------------------hcCceeeeeEcCCCCeEEE
Confidence 4555666666666665444444333210 4578999999999999999
Q ss_pred eeecCCCcEEEEeecc
Q 042146 246 GALDNDRTMKIWTQEK 261 (262)
Q Consensus 246 ~~~d~d~~i~iw~~~~ 261 (262)
+| .||+|.+..+++
T Consensus 343 cS--~DGtV~~i~Fee 356 (942)
T KOG0973|consen 343 CS--LDGTVALIHFEE 356 (942)
T ss_pred Ee--cCCeEEEEEcch
Confidence 99 899999998875
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=185.54 Aligned_cols=190 Identities=25% Similarity=0.457 Sum_probs=161.7
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA 90 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~ 90 (262)
......+++......|.++.|..||++||+|...|.|+++|+ .+.
T Consensus 56 ~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~-----------------------------------k~r 100 (487)
T KOG0310|consen 56 VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM-----------------------------------KSR 100 (487)
T ss_pred chhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc-----------------------------------ccH
Confidence 344566667777889999999999999999999999888853 345
Q ss_pred ccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEE
Q 042146 91 TSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRI 168 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~ 168 (262)
..++.+.+|..++..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.+.+|+| ++.++++|+.||+|++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 56778899999999999999 555678899999999999998887668899999999999999 5568999999999999
Q ss_pred EeCCC--------------------CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 169 LDAST--------------------PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 169 ~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
||++. |.|..+++++. ..+++||+.+|. .+..+.. |
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~----------------------H 237 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN----------------------H 237 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc----------------------c
Confidence 99987 67788888774 479999999654 4444444 8
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
...|+|+++..++..|+++| -|+.|++|++.
T Consensus 238 ~KtVTcL~l~s~~~rLlS~s--LD~~VKVfd~t 268 (487)
T KOG0310|consen 238 NKTVTCLRLASDSTRLLSGS--LDRHVKVFDTT 268 (487)
T ss_pred cceEEEEEeecCCceEeecc--cccceEEEEcc
Confidence 89999999999999999999 78999999964
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=187.05 Aligned_cols=245 Identities=24% Similarity=0.406 Sum_probs=180.6
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC----CCCCCCCC---Cccc--cCCcccc---cc
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN----FDSTPPSP---LQKF--TGHEQGI---SD 78 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~---~~~~--~~~~~~v---~~ 78 (262)
-|......+++|+..|.++++.|.|..|++|+.|-+|++||++.... +....+.. +..+ ......+ +.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 36666778899999999999999999999999999999999987432 11111111 1111 1111111 12
Q ss_pred ceeEEEEecCCCcc------------ceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee-eeeee-----
Q 042146 79 LATIRLWDVPTATS------------LKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC-LKVLP----- 139 (262)
Q Consensus 79 ~~~i~v~d~~~~~~------------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~----- 139 (262)
-+..+++|-...+. +...++|...++|.+|+| +...+++++.||++++||+...+. ...++
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 22667777543222 123468999999999999 556789999999999999976542 22222
Q ss_pred cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecC
Q 042146 140 AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
+..-+++.++|+|+++.+++|+.||.|.+|+.++ .+|++|++-+.|+++++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 2334789999999999999999999999999765 789999999999999999999
Q ss_pred CC-ceeeEEeccCCceeEEEEEEecCCCeeEEc----------------------------cccceEEEEEcCCCCeEEE
Q 042146 195 TR-KILKTYSGYTNSKYCISSTFSVTNGKYIVS----------------------------HRDPVISVASHPAKNIIAS 245 (262)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~v~~~~~~p~~~~l~~ 245 (262)
.. +++....+.........++|++.+.-++.+ ....|..+.|||.-+.|+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 74 566666665555555566666655555544 4567889999999888888
Q ss_pred eeecCCCcEEEE
Q 042146 246 GALDNDRTMKIW 257 (262)
Q Consensus 246 ~~~d~d~~i~iw 257 (262)
|+ .||+++++
T Consensus 475 gs--gdG~~~vy 484 (641)
T KOG0772|consen 475 GS--GDGTAHVY 484 (641)
T ss_pred ec--CCCceEEE
Confidence 88 88999875
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.3e-28 Score=181.72 Aligned_cols=229 Identities=19% Similarity=0.285 Sum_probs=173.6
Q ss_pred cCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCC--CCCCCccccCCcccccc----------------cee
Q 042146 21 GHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDST--PPSPLQKFTGHEQGISD----------------LAT 81 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~~----------------~~~ 81 (262)
.|.+.|+.+.+-|+.. .+|+++..+.+.|||...-...... ...+...+.+|...-.. ...
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5999999999999755 6677788999999998775443332 33445566666653222 228
Q ss_pred EEEEecCCCcc-------ceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC--CCeeeeeeecCCCCeeeEEEc
Q 042146 82 IRLWDVPTATS-------LKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK--TGKCLKVLPAHSDPVTAIDFN 151 (262)
Q Consensus 82 i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~ 151 (262)
|.+||+..... ...+.+|...|..++|+| +..++++++.|+.+.|||+| +.++.+...+|.++|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999975433 345678999999999999 67788999999999999999 567777788999999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146 152 R-DGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208 (262)
Q Consensus 152 ~-~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 208 (262)
| ++..||+|+.|++|++||+|. .....|++++.|+.+.+||+..-...+.-......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 9 667899999999999999998 45678999999999999999753322221110000
Q ss_pred eeEEEEEEecCCC-eeEEccccceEEEEEcCCCCeEE-EeeecCCCcEEEEeec
Q 042146 209 KYCISSTFSVTNG-KYIVSHRDPVISVASHPAKNIIA-SGALDNDRTMKIWTQE 260 (262)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~d~~i~iw~~~ 260 (262)
+++- ..-.||...|..+.|+|....++ +.+ +|+.+.||++.
T Consensus 362 ---------ppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--eDN~LqIW~~s 404 (422)
T KOG0264|consen 362 ---------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--EDNILQIWQMA 404 (422)
T ss_pred ---------CcceeEEecCcccccccccCCCCCCeEEEEec--CCceEEEeecc
Confidence 0010 11234899999999999988655 555 79999999986
No 72
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=166.23 Aligned_cols=205 Identities=20% Similarity=0.266 Sum_probs=162.6
Q ss_pred CCCCceeeec-----ccccceecccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 2 SSDRSLESFR-----PYTLTQTLNGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~-----~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
|+|++|++|. +.+++.+|.+|.+||..++|-. .|.+||+++.||.|.||..++.
T Consensus 30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g------------------- 90 (299)
T KOG1332|consen 30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG------------------- 90 (299)
T ss_pred cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-------------------
Confidence 6899999996 2367889999999999999954 6999999999999999965431
Q ss_pred ccccceeEEEEecCCCccceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCeeeEE
Q 042146 75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVTAID 149 (262)
Q Consensus 75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~ 149 (262)
..........|...|++++|.| .|-.|++++.||.|.|.+.+.. .......+|.-.|++++
T Consensus 91 --------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 91 --------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred --------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 2334556678999999999999 5678999999999999988754 22344578999999999
Q ss_pred EccC---C-----------CEEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEE
Q 042146 150 FNRD---G-----------TMIVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLR 189 (262)
Q Consensus 150 ~~~~---~-----------~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~ 189 (262)
|.|- | +.|++|+.|..|++|+..+ ....++++++.||.+.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9984 4 5699999999999999876 2346899999999999
Q ss_pred EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
||-.+.-.......- +......+..++||+.|++|+.++ .|+.|.+|+-+
T Consensus 237 Iwt~~~e~e~wk~tl-------------------l~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTL-------------------LEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccccc-------------------cccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence 997652111111000 000446799999999999999999 89999999865
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=170.26 Aligned_cols=204 Identities=18% Similarity=0.295 Sum_probs=152.0
Q ss_pred ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc-ceecc
Q 042146 20 NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS-LKTLI 97 (262)
Q Consensus 20 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~-~~~~~ 97 (262)
..-...|.+++||| ...+++++|.||+||+|+++.. +.. .+...
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~----------------------------------g~~~~ka~~ 69 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS----------------------------------GQLVPKAQQ 69 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecC----------------------------------Ccccchhhh
Confidence 34567899999999 4566779999999999987641 111 13455
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC--EEEEEeCCCeEEEEeCCC--
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT--MIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~-- 173 (262)
.|.++|.+++|+.+|..+++|+.|+.+++||+.+++. ..+..|.++|..+.|-+... .|++|+.|++|+.||+|.
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 6889999999999999999999999999999999964 56678999999999988655 899999999999999998
Q ss_pred ---------------CCccEEEEEcCCCeEEEEecCCCcee---------------eEEeccCCc----eeEEEEEEe--
Q 042146 174 ---------------PNGKFILVGTLDNTLRLWNYSTRKIL---------------KTYSGYTNS----KYCISSTFS-- 217 (262)
Q Consensus 174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~---------------~~~~~~~~~----~~~~~~~~~-- 217 (262)
.-..+++++..+..|.+|+++++... ..++..+.. +........
T Consensus 149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID 228 (347)
T ss_pred eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence 23567889999999999999764322 222211110 000000000
Q ss_pred ---cCCCeeEEccc---------cceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 218 ---VTNGKYIVSHR---------DPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 218 ---~~~~~~~~~~~---------~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+..+..+..|+ -.|++++|+|....|+|+| .||++.+||-+
T Consensus 229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG--sDGtf~FWDkd 281 (347)
T KOG0647|consen 229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG--SDGTFSFWDKD 281 (347)
T ss_pred CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec--CCceEEEecch
Confidence 01122223354 2589999999999999999 89999999964
No 74
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=181.24 Aligned_cols=170 Identities=26% Similarity=0.491 Sum_probs=156.5
Q ss_pred ccccCCccccccce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC
Q 042146 67 QKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT 131 (262)
Q Consensus 67 ~~~~~~~~~v~~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 131 (262)
..+.+|.+.|.+++ +++|||+.+++...++.+|...|..+++++...|+++++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 34567777776655 999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEE
Q 042146 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~ 191 (262)
++.++.+.+|-+.|.+++.+|.-+.|++|+.|.++++||+|+ +-...+++|+.|++|++|
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 999999999999999999999999999999999999999998 557789999999999999
Q ss_pred ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|++.|+...++.. |+..|.+++.+|....+|+++.| .|+-|++.+
T Consensus 305 Dl~agkt~~tlt~----------------------hkksvral~lhP~e~~fASas~d---nik~w~~p~ 349 (460)
T KOG0285|consen 305 DLRAGKTMITLTH----------------------HKKSVRALCLHPKENLFASASPD---NIKQWKLPE 349 (460)
T ss_pred eeccCceeEeeec----------------------ccceeeEEecCCchhhhhccCCc---cceeccCCc
Confidence 9999999988887 89999999999999999999833 799998864
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=177.81 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=177.1
Q ss_pred eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---------
Q 042146 9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL--------- 79 (262)
Q Consensus 9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------- 79 (262)
+....+.+.+|+||...|+.+.|+|+...+++++.|..|++|...... .......|...|..+
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--------~~~~~~~h~~~V~~ls~h~tgeYl 318 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--------EPTSSRPHEEPVTGLSLHPTGEYL 318 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--------CccccccccccceeeeeccCCcEE
Confidence 335678899999999999999999999999999999999999765432 222222333333222
Q ss_pred ------eeEEEEecCCCccceeccc--CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146 80 ------ATIRLWDVPTATSLKTLIG--HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151 (262)
Q Consensus 80 ------~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 151 (262)
+...+.|++++..+..... ..-.+++.+|||||.+|.+|..||.|++||+.++..+..|.+|.++|..++|+
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs 398 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS 398 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence 2667778888877665543 22458999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCC--CceeeEEeccCCc
Q 042146 152 RDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYST--RKILKTYSGYTNS 208 (262)
Q Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~ 208 (262)
.+|-+|++++.|+.|++||+|. ..|.+|+.++.+=.|++++-.+ ..++..+..
T Consensus 399 ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~---- 474 (506)
T KOG0289|consen 399 ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD---- 474 (506)
T ss_pred cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh----
Confidence 9999999999999999999997 5788999997776666665333 345555544
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|.+..+++.|....++++++| -|..++++.+
T Consensus 475 ------------------~sg~st~v~Fg~~aq~l~s~s--md~~l~~~a~ 505 (506)
T KOG0289|consen 475 ------------------HSGLSTGVRFGEHAQYLASTS--MDAILRLYAL 505 (506)
T ss_pred ------------------cccccceeeecccceEEeecc--chhheEEeec
Confidence 778899999999999999999 7788888865
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.8e-26 Score=157.96 Aligned_cols=222 Identities=22% Similarity=0.388 Sum_probs=175.9
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce--------------
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-------------- 80 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------- 80 (262)
+.+.-+.|.+.|.|.+|+|+|+++++|+.|++|++..+....... .....++..|...+..++
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~---~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA---TGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc---cCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 445567899999999999999999999999999998775532211 111223333433333322
Q ss_pred ------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--C-----CCCeee
Q 042146 81 ------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--H-----SDPVTA 147 (262)
Q Consensus 81 ------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~v~~ 147 (262)
.|++-|...++..+.+.+|.+-|.++- +-++-.+++|+.|.+|++||++-..++..+.. | .+.|.+
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 788889999999999999999998773 23588999999999999999998888877632 2 256899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146 148 IDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207 (262)
Q Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 207 (262)
++..|.|++|++|-.|....+||++. |...|+++++.|..|++-|+. |.+...++.
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~--- 312 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPI--- 312 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCce---
Confidence 99999999999999999999999987 788999999999999999986 444333321
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.++..|++.+..+.|+|..--+++.+ .|.++.+|.++
T Consensus 313 --------------~vv~ehkdk~i~~rwh~~d~sfisss--adkt~tlwa~~ 349 (350)
T KOG0641|consen 313 --------------MVVAEHKDKAIQCRWHPQDFSFISSS--ADKTATLWALN 349 (350)
T ss_pred --------------EEEEeccCceEEEEecCccceeeecc--CcceEEEeccC
Confidence 11223999999999999999999999 89999999875
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5e-27 Score=177.27 Aligned_cols=234 Identities=22% Similarity=0.335 Sum_probs=189.3
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC---------CCCccc-cCCccccccce-----
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP---------SPLQKF-TGHEQGISDLA----- 80 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~-~~~~~~v~~~~----- 80 (262)
...+..|.-+|.|++++|++++.++++.+++|.=|++.........-+ .+...- ..|...+..++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 466778999999999999999999999999999999877653311111 111111 13433333322
Q ss_pred ----------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 81 ----------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 81 ----------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
.|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|..|++|++.....+.++.+|.+.|.++.-
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 7889999999999999999999999999988889999999999999999998889999999999999998
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
...++.+-+|+.|+++++|++.. -+...+++|+.+|.|.+|++.+.+++.+.+...+.....
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCc
Confidence 88888888888999999999966 467889999999999999999999988876432211100
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
-.+.+...|++++..|...++|+|+ .+|.|++|.++.
T Consensus 375 ----------~~~~~~~Witsla~i~~sdL~asGS--~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 375 ----------DPVNGNFWITSLAVIPGSDLLASGS--WSGCVRLWKIED 411 (479)
T ss_pred ----------cccccccceeeeEecccCceEEecC--CCCceEEEEecC
Confidence 0011345899999999999999999 789999999875
No 78
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.6e-26 Score=185.25 Aligned_cols=167 Identities=14% Similarity=0.289 Sum_probs=139.9
Q ss_pred CCCCceeeeccc---------ccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146 2 SSDRSLESFRPY---------TLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 71 (262)
+.|++|+.|+-. .++..+.+|...|.+++|+|++ ++|++|+.|++|+|||+
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl------------------- 155 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV------------------- 155 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC-------------------
Confidence 468999988621 3567889999999999999985 69999999999988865
Q ss_pred CccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-eeeEEE
Q 042146 72 HEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-VTAIDF 150 (262)
Q Consensus 72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~ 150 (262)
++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|.+. +..+.|
T Consensus 156 ----------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 156 ----------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW 219 (493)
T ss_pred ----------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence 345566677789999999999999999999999999999999999999888888764 456788
Q ss_pred ccCCCEEEEEe----CCCeEEEEeCCC----------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEe
Q 042146 151 NRDGTMIVTSS----YDGLYRILDAST----------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 151 ~~~~~~l~~~~----~dg~i~~~d~~~----------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 203 (262)
.+++..+++++ .|+.|++||++. +++++|++++ .|+.|++||+.+++++....
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 99888777654 479999999875 5677788777 59999999999988776654
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=186.34 Aligned_cols=214 Identities=24% Similarity=0.452 Sum_probs=174.6
Q ss_pred cCcCceE---EEEEc-cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------e
Q 042146 21 GHLRAVS---YVKFS-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------T 81 (262)
Q Consensus 21 ~h~~~v~---~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~ 81 (262)
.|...|. .+..+ |.++||+|||.||.|++|+......... ......++.|...+..+. +
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGKTLISASSDTT 96 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence 3455555 44444 4677899999999999999866433211 113455555555443322 9
Q ss_pred EEEEecCCC--ccceecccCCcceEEEEE-eCCCCEEEeecCCCeEEEEECCCC--eeee--------eee-cCCCCeee
Q 042146 82 IRLWDVPTA--TSLKTLIGHTNYVFCINF-NPQSNRIVSDTFNETIRIWDIKTG--KCLK--------VLP-AHSDPVTA 147 (262)
Q Consensus 82 i~v~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~--~~~~--------~~~-~~~~~v~~ 147 (262)
|++|+...+ -++.++..|.+.|.|+++ .++..++|+|+-|+.|.+||++++ +.+. .+. ++..+|.+
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 999999887 577788999999999999 778899999999999999999976 2222 222 67889999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146 148 IDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207 (262)
Q Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 207 (262)
++..+.|..+++|+..+.+++||.++ .+|..+++++.||+|++||+...+++.++..
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v--- 253 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV--- 253 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---
Confidence 99999999999999999999999887 7899999999999999999999999999887
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|.+.|.++..+|+-..+++|+ .||.|..=++.
T Consensus 254 -------------------H~e~VWaL~~~~sf~~vYsG~--rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 254 -------------------HKEGVWALQSSPSFTHVYSGG--RDGNIYRTDLR 285 (735)
T ss_pred -------------------ccCceEEEeeCCCcceEEecC--CCCcEEecccC
Confidence 888899999999999999999 89999876654
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=181.88 Aligned_cols=221 Identities=22% Similarity=0.382 Sum_probs=181.1
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--------------
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-------------- 77 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------- 77 (262)
|......+..|.+.|..+.|-++...|++|+.|..|++|+....+ ......+.+..+++.
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEee
Confidence 455667788999999999999998899999999999999876533 112222333322222
Q ss_pred -cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146 78 -DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 78 -~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
....+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ..+.+.+|+.+ ...
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~ 314 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISD 314 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--cee
Confidence 22279999999999999999999999999998877779999999999999999988887764 35667777776 557
Q ss_pred EEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 157 IVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
++++..|++|++||.++ +++..|++++.|.++.+.|+++.+....+......
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--------- 385 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--------- 385 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc---------
Confidence 88999999999999887 68888999999999999999999888888753321
Q ss_pred cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.....+.+.|||++.|+++|| .||.|+||++.+
T Consensus 386 ---------~asDwtrvvfSpd~~YvaAGS--~dgsv~iW~v~t 418 (459)
T KOG0288|consen 386 ---------CASDWTRVVFSPDGSYVAAGS--ADGSVYIWSVFT 418 (459)
T ss_pred ---------cccccceeEECCCCceeeecc--CCCcEEEEEccC
Confidence 333489999999999999999 899999999864
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=171.73 Aligned_cols=234 Identities=22% Similarity=0.356 Sum_probs=180.5
Q ss_pred CCCCc--eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccCCccc
Q 042146 2 SSDRS--LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTGHEQG 75 (262)
Q Consensus 2 s~d~~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~~ 75 (262)
|+|.+ ||..+....+.++.||.+.|+++.|++.+.++++++.|++-.||...-.-.... .......+...+...
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~ 246 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH 246 (481)
T ss_pred ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence 45665 455578899999999999999999999999999999999999997321100000 000000001111000
Q ss_pred cccce-eEEEEec-CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146 76 ISDLA-TIRLWDV-PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 76 v~~~~-~i~v~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (262)
..... ..+. |- .-..++..+.+|.+.|.+..|...++++++++.|.+..+||++++.++..+.+|....+.++-+|.
T Consensus 247 ~~d~d~~~~s-D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt 325 (481)
T KOG0300|consen 247 NRDTDSSEKS-DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT 325 (481)
T ss_pred cccccccccc-CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence 00000 0000 00 012356678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEE
Q 042146 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCI 212 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~ 212 (262)
.+++++++.|.+.++||++. ..+..+++|+.|.+|++||+++. .++.++.
T Consensus 326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR--------- 396 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR--------- 396 (481)
T ss_pred ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee---------
Confidence 99999999999999999987 45677999999999999999975 4667776
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
-..+++.++.+..+++++.-- ++..|++||++.
T Consensus 397 --------------tdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG 429 (481)
T KOG0300|consen 397 --------------TDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNG 429 (481)
T ss_pred --------------cCCccceeEeecCCceEEecc--CCceEEEEecCC
Confidence 667899999998888998887 789999999975
No 82
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=174.89 Aligned_cols=199 Identities=17% Similarity=0.262 Sum_probs=162.0
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
-.-+++|.|++-+|+|.+|+.|+..|.|++| .+.+|..+..+.+|
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlW-----------------------------------elssG~LL~v~~aH 122 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLW-----------------------------------ELSSGILLNVLSAH 122 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEE-----------------------------------EeccccHHHHHHhh
Confidence 3457889999999999999999888887766 55688999999999
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECC---------CCeeeeeeecCCCCeeeEEEccCC--CEEEEEeCCCeEEE
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIK---------TGKCLKVLPAHSDPVTAIDFNRDG--TMIVTSSYDGLYRI 168 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~ 168 (262)
...|+|+.|+-|+.++++|+.||.|.+|++. +-++++.+..|.-+|+++...+.| ..+++++.|.++++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~ 202 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKL 202 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence 9999999999999999999999999999873 346788899999999999998753 58999999999999
Q ss_pred EeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 169 LDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 169 ~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
||+.. |.+..+++|+.+|.|.+.++....... ..+..-...+.......+.+|..
T Consensus 203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~------~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS------AGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred EEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc------ccccccccccccceeeeeccccC
Confidence 99887 788999999999999998876432111 00111111111233334556877
Q ss_pred --ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 230 --PVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 230 --~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+|+|++.+-||.+|++|+ .||.|.|||+.+
T Consensus 277 ~~~ITcLais~DgtlLlSGd--~dg~VcvWdi~S 308 (476)
T KOG0646|consen 277 ESAITCLAISTDGTLLLSGD--EDGKVCVWDIYS 308 (476)
T ss_pred CcceeEEEEecCccEEEeeC--CCCCEEEEecch
Confidence 999999999999999999 999999999864
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.5e-26 Score=163.39 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=153.5
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
-...|.++.|+|.+..|++++.||++++|+... .. +.....|..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-----------------------------------~~-l~~~~~~~~ 55 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-----------------------------------NS-LKLKFKHGA 55 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccc-----------------------------------hh-hhhheecCC
Confidence 357799999999999999999999999997643 22 222234889
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------- 173 (262)
++.+++|.+ ...+++|+.||.|+.+|++++... .+..|..+|.++.+++....+++|+.|++|++||.+.
T Consensus 56 plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred ceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence 999999986 567899999999999999988654 4557999999999999888999999999999999994
Q ss_pred ---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE-------------------
Q 042146 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV------------------- 225 (262)
Q Consensus 174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 225 (262)
..++.|++|+.+..+.+||+++.....+.....-......+...+....++.
T Consensus 134 ~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 134 QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 5688999999999999999997654332222111111112222221111111
Q ss_pred -------ccc---------cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 226 -------SHR---------DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 226 -------~~~---------~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.|. -+|++|+|||-...|+||+ .||.|.+||+.+
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG--sDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG--SDGIVNIWDLFN 263 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecC--CCceEEEccCcc
Confidence 132 3799999999999999999 999999999864
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=173.39 Aligned_cols=179 Identities=23% Similarity=0.505 Sum_probs=166.2
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
..+.++...|..+.+++|+.|..+.++ |....+.+..+++|...|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~-----------------------------------d~~s~q~l~~~~Gh~kki 264 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLF-----------------------------------DKPSNQILATLKGHTKKI 264 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEE-----------------------------------ecchhhhhhhccCcceEE
Confidence 568889888888889999999887777 445678889999999999
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------- 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------- 173 (262)
+.+.++|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.|+++
T Consensus 265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 9999999999999999999999999988777788889999999999999999999999999999999887
Q ss_pred ------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146 174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN 241 (262)
Q Consensus 174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 241 (262)
|||..|.+|+.||.|+|||+..+..+..|++ |.++|..++|+.+|-
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg----------------------ht~~vk~i~FsENGY 402 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG----------------------HTGPVKAISFSENGY 402 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC----------------------CCCceeEEEeccCce
Confidence 8999999999999999999999999999988 999999999999999
Q ss_pred eEEEeeecCCCcEEEEeecc
Q 042146 242 IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 242 ~l~~~~~d~d~~i~iw~~~~ 261 (262)
+|++++ +|+.|++||+++
T Consensus 403 ~Lat~a--dd~~V~lwDLRK 420 (506)
T KOG0289|consen 403 WLATAA--DDGSVKLWDLRK 420 (506)
T ss_pred EEEEEe--cCCeEEEEEehh
Confidence 999999 899999999975
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.2e-26 Score=180.82 Aligned_cols=242 Identities=22% Similarity=0.361 Sum_probs=177.3
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC---CCCCCC----ccccCCccc----cccc
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPL----QKFTGHEQG----ISDL 79 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~----~~~~~~~~~----v~~~ 79 (262)
..+++.+.+.+|...|..+++.+.. .++++|.||++++|+-........ ..+... ..+...... -...
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred CcceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 4578889999999999999986654 799999999999998643221110 000000 111111111 1223
Q ss_pred eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (262)
..+.+|...+..++..+++|+..|.|+....++. +++||.|.++++|- .+++...+.+|...|++++.-|++ .+++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEe
Confidence 3788999999999999999999999999887777 99999999999995 466777799999999999999987 8999
Q ss_pred EeCCCeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec----
Q 042146 160 SSYDGLYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV---- 218 (262)
Q Consensus 160 ~~~dg~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (262)
|+.|++|++|.-.. -++..+++++.||.|++|++ +|+++.++.+|.+.+++++...+.
T Consensus 157 gsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 157 GSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred ccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEE
Confidence 99999999998654 45667889999999999999 799999999988877777622110
Q ss_pred -------------CCCeeEEccc-cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 219 -------------TNGKYIVSHR-DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 -------------~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
........|. ..|.++.+-++|.++ +|+ .||.||||...+
T Consensus 236 s~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIv-vg~--SDG~VrVfT~~k 289 (745)
T KOG0301|consen 236 STGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIV-VGG--SDGRVRVFTVDK 289 (745)
T ss_pred EecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEE-Eec--cCceEEEEEecc
Confidence 0000011133 366777777777644 444 578888877654
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.7e-26 Score=188.54 Aligned_cols=215 Identities=22% Similarity=0.394 Sum_probs=168.6
Q ss_pred cCcCceEEEEEccCCCeEEEec--CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSS--AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~ 98 (262)
.++..|.+++.+|++..+|||+ .|+.++||+.+..... ...++..-.+.+.++..
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~-----------------------~~~~~~~l~k~l~~m~~ 67 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE-----------------------KEEKNENLPKHLCTMDD 67 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccch-----------------------hhhhhcccchhheeecc
Confidence 3456799999999999999999 9999999987653210 11122223456677888
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------------------CeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------------------GKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
|.+.|+|+.|+|||++||+|++|+.|.||+... -+.+..+.+|.+.|..++|+|++.+|+++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence 999999999999999999999999999998762 13567788999999999999999999999
Q ss_pred eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC----ceeEEEEEE
Q 042146 161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN----SKYCISSTF 216 (262)
Q Consensus 161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~ 216 (262)
+.|++|.+|+.++ |-|+||++-+.|++|+||+..+....+.+..+.. ...-.+..|
T Consensus 148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW 227 (942)
T ss_pred cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence 9999999999887 8899999999999999999777666665554322 222233334
Q ss_pred ecCCCe--------------------------eEEccccceEEEEEcCC-----CC------------eEEEeeecCCCc
Q 042146 217 SVTNGK--------------------------YIVSHRDPVISVASHPA-----KN------------IIASGALDNDRT 253 (262)
Q Consensus 217 ~~~~~~--------------------------~~~~~~~~v~~~~~~p~-----~~------------~l~~~~~d~d~~ 253 (262)
++++.+ -++||.+++.+++|+|. .+ .+|+|| .|++
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrS 305 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRS 305 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCcc
Confidence 433322 34459999999999982 11 678888 8999
Q ss_pred EEEEeec
Q 042146 254 MKIWTQE 260 (262)
Q Consensus 254 i~iw~~~ 260 (262)
|.||...
T Consensus 306 lSVW~T~ 312 (942)
T KOG0973|consen 306 LSVWNTA 312 (942)
T ss_pred EEEEecC
Confidence 9999863
No 87
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=9.3e-27 Score=176.80 Aligned_cols=195 Identities=23% Similarity=0.444 Sum_probs=152.9
Q ss_pred CCCccccCCccccccce----------------eEEEEecCC-CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEE
Q 042146 64 SPLQKFTGHEQGISDLA----------------TIRLWDVPT-ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRI 126 (262)
Q Consensus 64 ~~~~~~~~~~~~v~~~~----------------~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 126 (262)
..+..+.+|..+++++. .|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 34455677877776655 899999987 8899999999999999999999999999999999999
Q ss_pred EECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCC
Q 042146 127 WDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLD 185 (262)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~d 185 (262)
||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+|+ +++..+++.++|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999886 35678999999988 7899999999999999998 789999999999
Q ss_pred CeEEEEecCCCceeeEEec-----------cCCceeEEE-------EEEe------cCCCeeEEcc--ccceEEEEEcCC
Q 042146 186 NTLRLWNYSTRKILKTYSG-----------YTNSKYCIS-------STFS------VTNGKYIVSH--RDPVISVASHPA 239 (262)
Q Consensus 186 g~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~-------~~~~------~~~~~~~~~~--~~~v~~~~~~p~ 239 (262)
+.++||+.+..-+++.... |.+..+..+ ..|+ ....+.+.+| .+.-..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 9999999886644433221 111100000 0011 1111122223 355678999999
Q ss_pred CCeEEEeeecCCCcEEEEeecc
Q 042146 240 KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 240 ~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|.+|++|. .||.+.+||.+.
T Consensus 444 G~~l~SGd--sdG~v~~wdwkt 463 (503)
T KOG0282|consen 444 GRTLCSGD--SDGKVNFWDWKT 463 (503)
T ss_pred CCeEEeec--CCccEEEeechh
Confidence 99999999 899999999763
No 88
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-25 Score=180.09 Aligned_cols=211 Identities=17% Similarity=0.317 Sum_probs=179.0
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------ccceeEEEEec
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------SDLATIRLWDV 87 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~~~~i~v~d~ 87 (262)
+|+..-+.++|.|+|++|.+++.||.|++|+..... ..+..+.. +...+ ...++|.+|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~----e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE----EEPETIDI---SGELVSSIACYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc----cCCchhhc---cCceeEEEeecccceEEeeccceEEEeeC
Confidence 689999999999999999999999999999865431 11111111 11112 12228889998
Q ss_pred CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 88 PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
..++.-..+....-++.+++++.+|++++.|+.|-.|++-++.+......+++|.++|.++.|+|.+.+|++.+.||.|+
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 88877766777788999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred EEeCCC----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146 168 ILDAST----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 168 ~~d~~~----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
+||+.. |++..+++.+.|+.|.+|+....+....+....
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~------------- 230 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL------------- 230 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-------------
Confidence 999876 788888888889999999999999888887533
Q ss_pred CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+...+.++.|+|.|++||+++ -||.|.|||.+
T Consensus 231 -------~ss~~~~~~wsPnG~YiAAs~--~~g~I~vWnv~ 262 (933)
T KOG1274|consen 231 -------SSSKFSDLQWSPNGKYIAAST--LDGQILVWNVD 262 (933)
T ss_pred -------cccceEEEEEcCCCcEEeeec--cCCcEEEEecc
Confidence 445599999999999999999 88999999987
No 89
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=5.5e-25 Score=178.70 Aligned_cols=185 Identities=20% Similarity=0.303 Sum_probs=144.6
Q ss_pred eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCC-CCEE
Q 042146 37 LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ-SNRI 115 (262)
Q Consensus 37 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 115 (262)
..++++.+-...+|+...+ ...+.+++|+......+..+.+|...|.+++|+|+ +++|
T Consensus 32 ~~ia~n~~~~A~~w~~~gG---------------------G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lL 90 (568)
T PTZ00420 32 CGIACSSGFVAVPWEVEGG---------------------GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEIL 90 (568)
T ss_pred eeEeeCCCeEEEEEEcCCC---------------------CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEE
Confidence 3455566666777765431 11235788887777778889999999999999996 7899
Q ss_pred EeecCCCeEEEEECCCCe--------eeeeeecCCCCeeeEEEccCCCE-EEEEeCCCeEEEEeCCC-------------
Q 042146 116 VSDTFNETIRIWDIKTGK--------CLKVLPAHSDPVTAIDFNRDGTM-IVTSSYDGLYRILDAST------------- 173 (262)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~------------- 173 (262)
++|+.||+|++||+.++. ++..+.+|...|.+++|+|++.. |++++.|++|++||++.
T Consensus 91 ASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V 170 (568)
T PTZ00420 91 ASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL 170 (568)
T ss_pred EEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcE
Confidence 999999999999997542 34467789999999999998875 57899999999999875
Q ss_pred ------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 174 ------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 174 ------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
+++.+|++++.|+.|+|||+++++.+..+.+|...+.. ..+....|++++.+|+++|
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s-----------------~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT-----------------KNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee-----------------EEEEeeeEcCCCCEEEEEE
Confidence 78999999999999999999999999888874332111 1123345678999999988
Q ss_pred ecCC----CcEEEEeecc
Q 042146 248 LDND----RTMKIWTQEK 261 (262)
Q Consensus 248 ~d~d----~~i~iw~~~~ 261 (262)
.| +.|+|||+.+
T Consensus 234 --~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 234 --FSKNNMREMKLWDLKN 249 (568)
T ss_pred --cCCCCccEEEEEECCC
Confidence 44 3799999863
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=185.45 Aligned_cols=200 Identities=31% Similarity=0.602 Sum_probs=170.2
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc-ccCCccccccce---------------eEEEE
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK-FTGHEQGISDLA---------------TIRLW 85 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~---------------~i~v~ 85 (262)
|...+.+..|+ ..++++++.|++|++|+.... ..+.. +.+|...+..+. ++++|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 56778899988 567999999999999976543 22233 555555544333 89999
Q ss_pred ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146 86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165 (262)
Q Consensus 86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 165 (262)
|..++++...+.+|...|.++... +.++++|+.|.+|++|++++++.+..+.+|.++|.++..+ +.++++|+.|++
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 999999999999999999999875 5678889999999999999999999999999999999998 889999999999
Q ss_pred EEEEeCCC------------------CCc-cEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 166 YRILDAST------------------PNG-KFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 166 i~~~d~~~------------------~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
|++||... .++ +.+++|+.|+.|++||++++ +++.++.+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~--------------------- 411 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG--------------------- 411 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcC---------------------
Confidence 99999887 456 99999999999999999999 89999987
Q ss_pred ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|..-+..+.+ .+++|++++ .|++|++||.++
T Consensus 412 -h~~~v~~l~~--~~~~Lvs~~--aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 412 -HTSLVSSLLL--RDNFLVSSS--ADGTIKLWDAEE 442 (537)
T ss_pred -Cccccccccc--ccceeEecc--ccccEEEeeccc
Confidence 6666655554 488999999 899999999875
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-25 Score=153.55 Aligned_cols=203 Identities=19% Similarity=0.376 Sum_probs=143.8
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
+..+.+++ ....|++++|+|.|.+.++|+..++++|-.......... +|...... ..-.
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~----------~hea~~~p----------p~v~ 81 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH----------AHEAAKQP----------PSVL 81 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCccc----------ccccccCC----------CeEE
Confidence 33444443 567899999999999999999999999886543211100 01000000 0000
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEE---------------------------------------------
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW--------------------------------------------- 127 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw--------------------------------------------- 127 (262)
.+.-+.|++.|.|.+|+|+|+++++|+.|.+|++.
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 11223455556666666666666666665555554
Q ss_pred -------ECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------
Q 042146 128 -------DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------- 173 (262)
Q Consensus 128 -------d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------- 173 (262)
|...++..+.+.+|.+-|.++ ++-++-++++|+.|.+|++||++.
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 333444455556677777665 344678899999999999999886
Q ss_pred CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT 253 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~ 253 (262)
|.|++|++|-.|....+||++.++.++.+.. |...|.++.|+|...++.+++ .|..
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~p----------------------hsadir~vrfsp~a~yllt~s--yd~~ 296 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHP----------------------HSADIRCVRFSPGAHYLLTCS--YDMK 296 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCC----------------------CccceeEEEeCCCceEEEEec--ccce
Confidence 7899999999999999999999999998877 889999999999999999999 8999
Q ss_pred EEEEeecc
Q 042146 254 MKIWTQEK 261 (262)
Q Consensus 254 i~iw~~~~ 261 (262)
|++=|++.
T Consensus 297 ikltdlqg 304 (350)
T KOG0641|consen 297 IKLTDLQG 304 (350)
T ss_pred EEEeeccc
Confidence 99988753
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-25 Score=168.51 Aligned_cols=192 Identities=24% Similarity=0.465 Sum_probs=162.5
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
.|.+..|+ +...++.+.+|+.+|....|+|++ ..|++|+.|+.+++||+
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~---------------------------- 140 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL---------------------------- 140 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc----------------------------
Confidence 45666776 334788899999999999999965 46777888888777755
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
.+......+.+|.+.|.|.+|+| ++..+++|+.||+|++||++.. ..+.++ .|..+|..+.+-|.|..++
T Consensus 141 -------s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 141 -------STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIA 212 (487)
T ss_pred -------CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEE
Confidence 44445557889999999999999 5668999999999999999977 667777 4899999999999999998
Q ss_pred EEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 159 TSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
+++ ...+++||+.. .++..|++|+-|+.+++||+.+.+.+..+.
T Consensus 213 sAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------- 277 (487)
T KOG0310|consen 213 SAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------- 277 (487)
T ss_pred EcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--------------
Confidence 887 46799999884 577999999999999999998888888887
Q ss_pred cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
-.++|.+++.+|+++.++.|. .||.+.+=
T Consensus 278 ---------~~~pvLsiavs~dd~t~viGm--snGlv~~r 306 (487)
T KOG0310|consen 278 ---------YPGPVLSIAVSPDDQTVVIGM--SNGLVSIR 306 (487)
T ss_pred ---------cccceeeEEecCCCceEEEec--ccceeeee
Confidence 678999999999999999998 88987654
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=6.5e-26 Score=162.82 Aligned_cols=210 Identities=22% Similarity=0.379 Sum_probs=160.6
Q ss_pred ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCC----CCCC---ccccCCccccccce-----------
Q 042146 20 NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPL---QKFTGHEQGISDLA----------- 80 (262)
Q Consensus 20 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~---~~~~~~~~~v~~~~----------- 80 (262)
..|.+.|+++...+ .|+|+++|+.||.|.+||+++....+... ..++ .--.+|...+..+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999988 68999999999999999998754322111 1110 01112333333222
Q ss_pred -----eEEEEecCCCccceecccCCcceEEEEEeC---CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc
Q 042146 81 -----TIRLWDVPTATSLKTLIGHTNYVFCINFNP---QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 81 -----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 152 (262)
+++|||..+.+....++ ..+.|.+-+++| ...++|+|..+-.|++.|+.+|...+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 99999999988877765 457788888888 355788999999999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 153 DGT-MIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 153 ~~~-~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
... .|++|+.||.|++||+|... |..++.|..+++....++... +|.+.|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRras----------gcf~~lD~hn~k~~p~~~~n~-------------------ah~gkv 249 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRAS----------GCFRVLDQHNTKRPPILKTNT-------------------AHYGKV 249 (397)
T ss_pred CceeEEEecCCCceEEEEEeeccc----------ceeEEeecccCccCccccccc-------------------ccccee
Confidence 766 58889999999999998632 445666666544333333110 189999
Q ss_pred EEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 232 ISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..++|..++.++++.+ .|..+++|+..+
T Consensus 250 ngla~tSd~~~l~~~g--td~r~r~wn~~~ 277 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCG--TDDRIRVWNMES 277 (397)
T ss_pred eeeeecccchhhhhcc--CccceEEeeccc
Confidence 9999999999999999 889999999864
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=168.41 Aligned_cols=205 Identities=20% Similarity=0.412 Sum_probs=165.3
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------eEEE
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TIRL 84 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~i~v 84 (262)
++|.+.+.+++.++||+|||+|+.|..|.||+.++. ..+..+.+|...|..++ .+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~--------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL--------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCccc--------chhhcccccccceeeeeeecCccceeeeecCCceEE
Confidence 489999999999999999999999999999976653 34444666666665544 8999
Q ss_pred EecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 85 WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
|+++....+.++.+|.+.|..|....-++.+.+|+.|.++++|++... ....+.+|.+.+-|++|-. ..+|++|+.+|
T Consensus 271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG 348 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNG 348 (479)
T ss_pred EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCc
Confidence 999999999999999999999998888888888889999999999543 3345678888999999974 56899999999
Q ss_pred eEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCC----ceeeEEeccCCc
Q 042146 165 LYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNS 208 (262)
Q Consensus 165 ~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~ 208 (262)
.|.+|++.. +..+++++|+.+|.|++|-+..+ +++..++
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls----- 423 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS----- 423 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-----
Confidence 999999765 56788999999999999998876 2333333
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
-.+-|++++|+++|+.+++|-. ....+-=|.
T Consensus 424 ------------------~~GfVNsl~f~~sgk~ivagiG-kEhRlGRW~ 454 (479)
T KOG0299|consen 424 ------------------LVGFVNSLAFSNSGKRIVAGIG-KEHRLGRWW 454 (479)
T ss_pred ------------------cccEEEEEEEccCCCEEEEecc-cccccceee
Confidence 4567999999999996666541 344443343
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=176.41 Aligned_cols=255 Identities=20% Similarity=0.339 Sum_probs=190.8
Q ss_pred CCCCceeeecccc----cceecccCcCceEEEEE-ccCCCeEEEecCCCeEEEeecCCCCC--CCCCCCCCCcccc-CCc
Q 042146 2 SSDRSLESFRPYT----LTQTLNGHLRAVSYVKF-SHDGRLLTSSSAEKTLLTYSLSSISN--FDSTPPSPLQKFT-GHE 73 (262)
Q Consensus 2 s~d~~i~~~~~~~----~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~-~~~ 73 (262)
|+|-+++.|.... ...++..|..-|.|+++ -++...+|+||-|+.|.+||+..... ...........+. ++.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 6788999997544 46788999999999999 77888999999999999999986522 1122222222233 555
Q ss_pred cccccce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 74 QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 74 ~~v~~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
.++++++ .+++||.++.+.+..+++|...|.++..++||+.++++++||+|++||+...+++.++
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 5555554 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC--------------------CccEEEEEcCCCeEEEEecCCCce
Q 042146 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP--------------------NGKFILVGTLDNTLRLWNYSTRKI 198 (262)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------------------~~~~l~~~~~dg~i~i~d~~~~~~ 198 (262)
..|+..|+++..+|+-.++++|+.||.|..=|++++ ..+-+-+++.|+.|+-|..+....
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~ 331 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA 331 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccc
Confidence 999999999999999999999999999999999881 123346778888999997653222
Q ss_pred eeEEeccCCceeEEEEEEec----CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 199 LKTYSGYTNSKYCISSTFSV----TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+........ .+....... ..-..+.....+|...+.-.+.+.++|=. ..|.+.+||+-
T Consensus 332 l~~s~~~~~--~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD--a~gnv~lwDIl 393 (735)
T KOG0308|consen 332 LSVSGDLDF--FSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD--AKGNVALWDIL 393 (735)
T ss_pred cccCCCCCc--ccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec--CCCCEEEEEee
Confidence 111111000 000000000 00111111234566667777899999988 89999999984
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.5e-25 Score=175.01 Aligned_cols=219 Identities=21% Similarity=0.388 Sum_probs=171.3
Q ss_pred CCCCceeeecc----cccceecccCcCceEE-EEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146 2 SSDRSLESFRP----YTLTQTLNGHLRAVSY-VKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~-~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262)
|+||+++.|.+ +...+.+.+|.+-|.+ ++|-+ ++-.+++|++|.+|.+| ......+...+.+|...
T Consensus 32 sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~--------~~~~~~P~~~LkgH~sn 103 (745)
T KOG0301|consen 32 SRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF--------KLSQAEPLYTLKGHKSN 103 (745)
T ss_pred CCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE--------ecCCCCchhhhhccccc
Confidence 57999999975 3345667888888887 88875 44569999999999999 55556777778888877
Q ss_pred cccce--------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC
Q 042146 76 ISDLA--------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141 (262)
Q Consensus 76 v~~~~--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 141 (262)
|.++. ++++|.. +++...+++|...|++++.-|++ .+++|+.|.+|++|.- ++.++++.+|
T Consensus 104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc
Confidence 76655 7888886 45666799999999999999987 8899999999999964 7889999999
Q ss_pred CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
.+-|..+++-+++ .|++|+.||.|++|++.. .++..++++++|++++||+.. ++.+.+
T Consensus 179 tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 179 TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred hhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 9999999998754 689999999999999954 678899999999999999876 777777
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcC
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP 238 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 238 (262)
.-....+++..+. ..+.-++.+.++.|+-..-++
T Consensus 256 ~lPttsiWsa~~L--~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVL--LNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEe--eCCCEEEeccCceEEEEEecc
Confidence 7655566555433 223333333445555444443
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-24 Score=157.38 Aligned_cols=195 Identities=23% Similarity=0.353 Sum_probs=159.5
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
|.+|+.+. ..+.++.+.||...|++++.+|-+..+++++.|++|++||+.
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR---------------------------- 130 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR---------------------------- 130 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec----------------------------
Confidence 56677664 667899999999999999999999999999999999999664
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--eeeeeee---cCCCCeeeEEEccCCCE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVLP---AHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~ 156 (262)
..++...+.. ..-..++|+|+|-++|++.....|++||++.- .+..++. .-....+.|.|+|+|+.
T Consensus 131 -------~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 131 -------VKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred -------CCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence 2333333321 22235789999999999998889999999864 2333332 23567899999999999
Q ss_pred EEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 157 IVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
|+.+...+.+++.|.-. |+++++++|+.||+|.+|++++++.+..+.+.
T Consensus 202 iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------- 273 (311)
T KOG1446|consen 202 ILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------- 273 (311)
T ss_pred EEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC--------
Confidence 99999999999999654 99999999999999999999999999998863
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+..++.++.|+|.-.++++++ ..+-+|-+.
T Consensus 274 -------------~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~ 303 (311)
T KOG1446|consen 274 -------------NGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD 303 (311)
T ss_pred -------------CCCCccccccCCceeeeeecC----ceEEEEecc
Confidence 567889999999999999886 478888654
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4.9e-25 Score=166.21 Aligned_cols=179 Identities=25% Similarity=0.444 Sum_probs=145.5
Q ss_pred cceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-------------
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------- 80 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------- 80 (262)
+-.++.+|++.-.++.|++... .|++++.|++|.+||+...... .....+...+.+|...+..+.
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC-CccccceEEeecCCcceehhhccccchhhheeec
Confidence 3448899999888999999644 7999999999999999765432 222334455666666554444
Q ss_pred ---eEEEEecC--CCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccC
Q 042146 81 ---TIRLWDVP--TATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 81 ---~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~ 153 (262)
.+.+||++ +.++.+...+|.++|+|++|+| ++..||+|+.|++|.+||+|+. ++++.+.+|+..|.++.|+|+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 89999999 5566677889999999999999 7778899999999999999964 578899999999999999994
Q ss_pred -CCEEEEEeCCCeEEEEeCCC----------------------------------CCc-cEEEEEcCCCeEEEEecC
Q 042146 154 -GTMIVTSSYDGLYRILDAST----------------------------------PNG-KFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 154 -~~~l~~~~~dg~i~~~d~~~----------------------------------~~~-~~l~~~~~dg~i~i~d~~ 194 (262)
...|++++.|+.+.+||+.. |+. -.+++.++|+.+.||.+.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 56899999999999999876 344 457778899999999876
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.2e-26 Score=159.09 Aligned_cols=187 Identities=24% Similarity=0.430 Sum_probs=155.7
Q ss_pred cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~ 98 (262)
-..|...|..+...-.|+.|||++.|++|+|+...+.. ..+.+.++.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--------------------------------~s~ll~~L~G 54 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--------------------------------QSKLLAELTG 54 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--------------------------------CceeeeEecC
Confidence 35788889888888889999999999999999765410 1256778999
Q ss_pred CCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEccC--CCEEEEEeCCCeEEEEeCC
Q 042146 99 HTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNRD--GTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 99 ~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~ 172 (262)
|.++|..++|.. .|.+|++++.||.|.||.-++++ ..+....|...|++++|.|. |-.|++++.||.|.+++.+
T Consensus 55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~ 134 (299)
T KOG1332|consen 55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD 134 (299)
T ss_pred CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence 999999999965 89999999999999999987763 34556789999999999994 5689999999999999877
Q ss_pred C-----------------------C--------------CccEEEEEcCCCeEEEEecCCCc--eeeEEeccCCceeEEE
Q 042146 173 T-----------------------P--------------NGKFILVGTLDNTLRLWNYSTRK--ILKTYSGYTNSKYCIS 213 (262)
Q Consensus 173 ~-----------------------~--------------~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~ 213 (262)
. | .-+.|++|+.|..|+||+...++ ..+++.+
T Consensus 135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~--------- 205 (299)
T KOG1332|consen 135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG--------- 205 (299)
T ss_pred CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---------
Confidence 6 1 12679999999999999998763 3344555
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCC----CeEEEeeecCCCcEEEEeecc
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAK----NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|.+-|+.++|.|.- ..||+++ .||++.||..++
T Consensus 206 -------------H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~ 242 (299)
T KOG1332|consen 206 -------------HKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDE 242 (299)
T ss_pred -------------cchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecC
Confidence 99999999999964 5799999 999999998764
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=173.23 Aligned_cols=233 Identities=15% Similarity=0.275 Sum_probs=175.9
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-----CCCC---------------ccccC-CccccccceeEEE
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-----PSPL---------------QKFTG-HEQGISDLATIRL 84 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~---------------~~~~~-~~~~v~~~~~i~v 84 (262)
..++.|.|....|...-.|..|+|||+.......... ...+ ..++. .-......++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 3467899988999999999999999998643221100 0000 11110 0111233449999
Q ss_pred EecCCCccce-------------------------------------ecccCCcceEEEEEeCCCCEEEeecCCCeEEEE
Q 042146 85 WDVPTATSLK-------------------------------------TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127 (262)
Q Consensus 85 ~d~~~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 127 (262)
|++..+..-. ......-.+.+++++|++++|++|..-|.++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9986521100 001233568999999999999999999999999
Q ss_pred ECCCCeeeeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCCC-------------------------------
Q 042146 128 DIKTGKCLKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDAST------------------------------- 173 (262)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~------------------------------- 173 (262)
++...+....+.+|...|.|+.|+. ..++|++++.|+.|.+||+..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 9999888888999999999999986 346899999999999999765
Q ss_pred ---------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc-eeEEE
Q 042146 174 ---------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS-KYCIS 213 (262)
Q Consensus 174 ---------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~ 213 (262)
|+.+++++++.|..|+|||+..|++.+.|++.... ...+.
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 77899999999999999999999999999875433 44444
Q ss_pred EEEecCCCeeE----------------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 214 STFSVTNGKYI----------------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 214 ~~~~~~~~~~~----------------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+...+...++. .+|...|+.+.|.+|-+.|++.+ .||.|.||++.
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs--gDgCIFvW~lp 713 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS--GDGCIFVWKLP 713 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec--CCceEEEEECc
Confidence 44443333322 23999999999999999999999 89999999985
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.6e-24 Score=153.99 Aligned_cols=208 Identities=20% Similarity=0.343 Sum_probs=161.4
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
.+|..-|.|+.|.+.|+.+|+++.|++++|||... +..+..+....+.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~-------------------------------~s~~W~~Ts~Wrah 58 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS-------------------------------DSGTWSCTSSWRAH 58 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccC-------------------------------CCCceEEeeeEEec
Confidence 47889999999999999999999999999998643 12345566678899
Q ss_pred CcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC---------eeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeE
Q 042146 100 TNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG---------KCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLY 166 (262)
Q Consensus 100 ~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 166 (262)
.+.|..+.|.+ -|+.+|+++.|+++.||.-... ....++....+.|+++.|.| -|-.|++++.||.+
T Consensus 59 ~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 59 DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred CCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence 99999999976 7899999999999999975211 23445566788999999999 57789999999999
Q ss_pred EEEeCCC------------------------------------CCccEEEEEcCC-----CeEEEEecCCC----ceeeE
Q 042146 167 RILDAST------------------------------------PNGKFILVGTLD-----NTLRLWNYSTR----KILKT 201 (262)
Q Consensus 167 ~~~d~~~------------------------------------~~~~~l~~~~~d-----g~i~i~d~~~~----~~~~~ 201 (262)
++|+... ...++|++|+.+ +.++||....+ ..+.+
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 9999765 245788888866 47888865432 35566
Q ss_pred EeccCCceeEEEEEEecCCCeeEEc-------------------------------------------cccceEEEEEcC
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVS-------------------------------------------HRDPVISVASHP 238 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~v~~~~~~p 238 (262)
+.++..++..++.++.....+.+.+ |.+.|..+.|+-
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 7777777776665544333222211 888999999999
Q ss_pred CCCeEEEeeecCCCcEEEEeec
Q 042146 239 AKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 239 ~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.|..|++.| .||.||+|+.+
T Consensus 299 tGtiLsStG--dDG~VRLWkan 318 (361)
T KOG2445|consen 299 TGTILSSTG--DDGCVRLWKAN 318 (361)
T ss_pred eeeEEeecC--CCceeeehhhh
Confidence 999999988 88999999753
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1e-24 Score=154.51 Aligned_cols=170 Identities=19% Similarity=0.288 Sum_probs=135.4
Q ss_pred CCceeee--cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-CCCCccccCCc-------
Q 042146 4 DRSLESF--RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-PSPLQKFTGHE------- 73 (262)
Q Consensus 4 d~~i~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~------- 73 (262)
|.+...| .+..-+-++++|++.|+|++..-+.+++++|+.|.++++||+++++.....+ +.++.......
T Consensus 31 D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 31 DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILA 110 (327)
T ss_pred CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEE
Confidence 4444444 3677889999999999999999999999999999999999999876543322 22222221111
Q ss_pred ---cccccceeEEEEecC-------CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeeecCC
Q 042146 74 ---QGISDLATIRLWDVP-------TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHS 142 (262)
Q Consensus 74 ---~~v~~~~~i~v~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~ 142 (262)
.....-+.|.++|++ ..++...+..+...++.+-|.|-++.|++|.+||.|..||+++++ .+...+.|.
T Consensus 111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~ 190 (327)
T KOG0643|consen 111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS 190 (327)
T ss_pred EehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc
Confidence 111222278899887 345567777788999999999999999999999999999999974 455567899
Q ss_pred CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
..|+.|.++|+..++++++.|.+-++||.++
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred cccccccccCCcceEEecccCccceeeeccc
Confidence 9999999999999999999999999999887
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8.6e-27 Score=184.90 Aligned_cols=185 Identities=25% Similarity=0.544 Sum_probs=169.1
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
+.+-.|...|.|+..-..++.+++|+.|..+-+|.+. ....+..+
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~-----------------------------------kp~~i~S~ 66 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG-----------------------------------KPNAITSL 66 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeecccccc-----------------------------------CCchhhee
Confidence 4556789999999987788999999999888888442 23334458
Q ss_pred ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146 97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--- 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--- 173 (262)
.+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.+++.++.|+.+++||.+.
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS 236 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 236 (262)
|+|++++.|++|..++|||+..|+....|+. |.+.+..+.|
T Consensus 147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~----------------------~e~~v~sle~ 204 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS----------------------HEGKVQSLEF 204 (825)
T ss_pred eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc----------------------cccccccccc
Confidence 8999999999999999999999999999998 8889999999
Q ss_pred cCCCCeEEEeeecCCCcEEEEeec
Q 042146 237 HPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 237 ~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+|..-++++|| .|+++++||++
T Consensus 205 hp~e~Lla~Gs--~d~tv~f~dle 226 (825)
T KOG0267|consen 205 HPLEVLLAPGS--SDRTVRFWDLE 226 (825)
T ss_pred CchhhhhccCC--CCceeeeeccc
Confidence 99999999999 89999999987
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-24 Score=161.82 Aligned_cols=233 Identities=18% Similarity=0.222 Sum_probs=169.9
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccCCccc---ccc---ceeEEEEecCCCcc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTGHEQG---ISD---LATIRLWDVPTATS 92 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~~---v~~---~~~i~v~d~~~~~~ 92 (262)
.++|+++.|+|....|++++.||+++||.++....... ....++.+...+..+ +.. -..++.||+++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999999876433211 111122221111111 111 11789999988764
Q ss_pred c--eecccCC-cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 93 L--KTLIGHT-NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 93 ~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
. ....++. ..+....++|++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 3 3344443 457788899999999999999999999999999998886 58899999999999999999999999999
Q ss_pred eCCC---------------------CCccEEEEEcCCCeEEEEecCC------CceeeEEeccCCceeEEEEEEecCCC-
Q 042146 170 DAST---------------------PNGKFILVGTLDNTLRLWNYST------RKILKTYSGYTNSKYCISSTFSVTNG- 221 (262)
Q Consensus 170 d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (262)
|++. .++.||++|+..|.|.|||..+ .+++..+......+..+. |+....
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~--Fn~d~qi 449 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ--FNHDAQI 449 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee--eCcchhh
Confidence 9987 6889999999999999999653 234444332222222221 111110
Q ss_pred --------------------eeEE------ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 222 --------------------KYIV------SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 222 --------------------~~~~------~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.++. ..-+.|+||+|+|.+.+||.|. ++|.+.+|++.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN--e~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN--EAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec--CCCceeeEeec
Confidence 0000 0345799999999999999999 99999999985
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8.8e-26 Score=166.10 Aligned_cols=211 Identities=18% Similarity=0.353 Sum_probs=167.9
Q ss_pred cceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------ce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------LA 80 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~ 80 (262)
++..+.+|...|.|++=+|.. ..+++|+.||.|+|||+..... ...+..|.+.|.. ..
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--------~~~f~AH~G~V~Gi~v~~~~~~tvgdDK 129 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--------IRTFKAHEGLVRGICVTQTSFFTVGDDK 129 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--------hheeecccCceeeEEecccceEEecCCc
Confidence 456778999999999999987 7899999999999998876433 2333334333332 22
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVT 159 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 159 (262)
+|+.|.++. .+++++.+ ...+..+.-+..+..+++++. .|.|||.+...++..+.-....|.++.|+| ....|++
T Consensus 130 tvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 130 TVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred ceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence 788888764 35555443 445666766666777888775 589999998889999987788899999999 4567888
Q ss_pred EeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecC
Q 042146 160 SSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 160 ~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
|+.|+.|.+||++. |.+-.+++|++|..++.||++.. +++....+
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d--------------- 270 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD--------------- 270 (433)
T ss_pred eccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc---------------
Confidence 88999999999997 77778999999999999999864 34555555
Q ss_pred CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.++.|||.|+-+++|| .|.+|+||..+.
T Consensus 271 -------hvsAV~dVdfsptG~Efvsgs--yDksIRIf~~~~ 303 (433)
T KOG0268|consen 271 -------HVSAVMDVDFSPTGQEFVSGS--YDKSIRIFPVNH 303 (433)
T ss_pred -------cceeEEEeccCCCcchhcccc--ccceEEEeecCC
Confidence 888999999999999999999 899999998864
No 106
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=160.16 Aligned_cols=199 Identities=24% Similarity=0.432 Sum_probs=153.6
Q ss_pred cccCcCceEEEEEccCC--CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 19 LNGHLRAVSYVKFSHDG--RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
.-.|.+.++-+.-++-+ .+.++-+..|.|.||++......-.... +.+-+ ...+++.++
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------------~~~~~-s~~~Pl~t~ 207 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG------------------LEVKD-SEFRPLFTF 207 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc------------------ccccc-cccCceEEe
Confidence 34678888888877754 4677778899999999864211100000 01111 345788889
Q ss_pred ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee---eeeeecCCCCeeeEEEccC-CCEEEEEeCCCeEEEEeC
Q 042146 97 IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC---LKVLPAHSDPVTAIDFNRD-GTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 97 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~ 171 (262)
.+|+..=..|+|+| ....|++|.--+.|++|...++.- ...+.+|+..|-.++|||. ...|++|+.||.|+|||+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 99999999999999 334578888888999999887642 2335679999999999994 468999999999999999
Q ss_pred CC----------------------CCccEEEEEcCCCeEEEEecCC---CceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 172 ST----------------------PNGKFILVGTLDNTLRLWNYST---RKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 172 ~~----------------------~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
|. ....+|++|+.||+++|||++. ++++..|+.
T Consensus 288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---------------------- 345 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---------------------- 345 (440)
T ss_pred cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe----------------------
Confidence 98 2345899999999999999986 567777776
Q ss_pred cccceEEEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146 227 HRDPVISVASHPAK-NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 227 ~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~ 260 (262)
|..+|+++.|+|.. ..|+++| .|.+|.|||+.
T Consensus 346 Hk~pItsieW~p~e~s~iaasg--~D~QitiWDls 378 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASG--EDNQITIWDLS 378 (440)
T ss_pred ccCCeeEEEeccccCceEEecc--CCCcEEEEEee
Confidence 99999999999964 4566666 79999999985
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-25 Score=176.91 Aligned_cols=196 Identities=21% Similarity=0.373 Sum_probs=157.0
Q ss_pred CCCCceeeecc-----cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146 2 SSDRSLESFRP-----YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262)
+..|.|..|+- .+++..|..|+..++++.|++. ..+|++||.||+|++||+.
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR---------------------- 164 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR---------------------- 164 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----------------------
Confidence 34677777752 3466788999999999999985 5689999999999888653
Q ss_pred cccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccC
Q 042146 76 ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 76 v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~ 153 (262)
..+...++.+....|..++|+| .+..++++.+.|.+.+||+|.. ++...+.+|.++|.++.|+|+
T Consensus 165 -------------~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 165 -------------SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred -------------cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC
Confidence 4455556667788999999999 7888999999999999999854 567788899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC---------------------CCc-cEEEEEc--CCCeEEEEecCCCc-eeeEEeccCCc
Q 042146 154 GTMIVTSSYDGLYRILDAST---------------------PNG-KFILVGT--LDNTLRLWNYSTRK-ILKTYSGYTNS 208 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~---------------------~~~-~~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~~~ 208 (262)
+.+||+|+.|++|++||+.. |.. ..|++++ .|-.|+|||++..- +-.++..
T Consensus 232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e---- 307 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE---- 307 (839)
T ss_pred CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec----
Confidence 99999999999999999885 444 3455554 56789999998543 3344444
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcC-CCCeEEEeeecCCCcEEE
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHP-AKNIIASGALDNDRTMKI 256 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~i 256 (262)
|...++.++|.. +...|.+++ .||+|..
T Consensus 308 ------------------H~~~vt~i~W~~~d~~~l~s~s--KD~tv~q 336 (839)
T KOG0269|consen 308 ------------------HTDSVTGIAWDSGDRINLWSCS--KDGTVLQ 336 (839)
T ss_pred ------------------cCccccceeccCCCceeeEeec--CccHHHH
Confidence 888899999965 456778888 8887643
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.8e-25 Score=158.52 Aligned_cols=190 Identities=27% Similarity=0.486 Sum_probs=163.3
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
.+++++.+.||...|+.++.....+.+.+++.|.+.+|| .++++.
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iW-----------------------------------s~Esg~ 181 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIW-----------------------------------SLESGA 181 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEE-----------------------------------eecccc
Confidence 355788889999999999998888899999999998887 456789
Q ss_pred cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEEC------CC----------------------------------
Q 042146 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI------KT---------------------------------- 131 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~------~~---------------------------------- 131 (262)
++.++.+|.+.|++++|++.+.++++++.|++-.||.. ..
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 99999999999999999999999999999999999951 10
Q ss_pred CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEE
Q 042146 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~ 191 (262)
.-++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+.. |..+++++++.|.+.++|
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence 024556788999999999999999999999999999999887 788999999999999999
Q ss_pred ecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 192 NYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 192 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|++.. ..+..|++ |.+.|+++.|..+.+ +++|+ +|.+|++||+.+
T Consensus 342 DFReaI~sV~VFQG----------------------HtdtVTS~vF~~dd~-vVSgS--DDrTvKvWdLrN 387 (481)
T KOG0300|consen 342 DFREAIQSVAVFQG----------------------HTDTVTSVVFNTDDR-VVSGS--DDRTVKVWDLRN 387 (481)
T ss_pred cchhhcceeeeecc----------------------cccceeEEEEecCCc-eeecC--CCceEEEeeecc
Confidence 99842 34455555 999999999987655 77888 899999999864
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=165.97 Aligned_cols=214 Identities=19% Similarity=0.322 Sum_probs=167.2
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC------CCC-CCCccccCCccc--c---ccceeEEEEecC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS------TPP-SPLQKFTGHEQG--I---SDLATIRLWDVP 88 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~------~~~-~~~~~~~~~~~~--v---~~~~~i~v~d~~ 88 (262)
.|.+-|.++.+|...+++.||+. |.|+|||+........ ... ..+....-...+ + ....++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888999999999999999985 8999999976422111 100 011111111111 0 112389999997
Q ss_pred CCccce--ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 89 TATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 89 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
...+-. ++....-...+++.+||.++.+++..||.|.|||+++...++.+++|...+.||.++++|..|.+|+.|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 665432 344344567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 167 RILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 167 ~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
+.||++. |++.+|++|.+++.+.|...... ....+.. |
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl----------------------h 632 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL----------------------H 632 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc----------------------c
Confidence 9999997 89999999999999988776532 2233332 8
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+.-|.++.|.+.|+++++.+ .|..+..|...
T Consensus 633 eScVLSlKFa~cGkwfvStG--kDnlLnawrtP 663 (705)
T KOG0639|consen 633 ESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTP 663 (705)
T ss_pred ccEEEEEEecccCceeeecC--chhhhhhccCc
Confidence 89999999999999999999 88999998763
No 110
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=158.22 Aligned_cols=148 Identities=29% Similarity=0.554 Sum_probs=139.1
Q ss_pred CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 90 ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
...+..+..|+..|.+++.+|+.+++++|+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+|++|..+|.|++|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 170 DAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 170 d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
+..+ |.+..|++|+.||.+..|.+.++...+.+.+ |..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G----------------------h~~ 191 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG----------------------HNS 191 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC----------------------CCC
Confidence 9877 8899999999999999999999888888887 889
Q ss_pred ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 230 PVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++++-.|.|+|+.++++. .||+|++|++..
T Consensus 192 ~ct~G~f~pdGKr~~tgy--~dgti~~Wn~kt 221 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGY--DDGTIIVWNPKT 221 (399)
T ss_pred CcccccccCCCceEEEEe--cCceEEEEecCC
Confidence 999999999999999999 899999999864
No 111
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-25 Score=178.24 Aligned_cols=176 Identities=26% Similarity=0.484 Sum_probs=158.4
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
.+..|.+|..+|.|+.|+++..+|++|+.+|+|++||+ +..+.++
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl-----------------------------------eeAk~vr 106 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL-----------------------------------EEAKIVR 106 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeeh-----------------------------------hhhhhhh
Confidence 44468899999999999999999999999999888854 5677788
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~- 173 (262)
++.+|...+.++.|+|.+.+.++|+.|+.+++||.+..-+.+.+.+|...+..++|+|+|++++.++.|.++++||+..
T Consensus 107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag 186 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG 186 (825)
T ss_pred hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc
Confidence 9999999999999999999999999999999999998889999999999999999999999999999999999999854
Q ss_pred -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 234 (262)
|..-.++.|+.|+++++||+++.+.+..... ....|.+.
T Consensus 187 k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~----------------------~~~~v~~~ 244 (825)
T KOG0267|consen 187 KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP----------------------ETDGVRSL 244 (825)
T ss_pred ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC----------------------ccCCceee
Confidence 4556788999999999999998888776655 45679999
Q ss_pred EEcCCCCeEEEee
Q 042146 235 ASHPAKNIIASGA 247 (262)
Q Consensus 235 ~~~p~~~~l~~~~ 247 (262)
+|+|++..+++|.
T Consensus 245 ~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 245 AFNPDGKIVLSGE 257 (825)
T ss_pred eecCCceeeecCc
Confidence 9999999998885
No 112
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=162.89 Aligned_cols=199 Identities=17% Similarity=0.369 Sum_probs=153.4
Q ss_pred CceEEEEEcc-------CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 24 RAVSYVKFSH-------DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 24 ~~v~~~~~~~-------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
..-.|++|.. .|+|+|.|+.|..|.|||++-.... .+...+....... .-..++.-...
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v-----~P~~~LGs~~sk~---------~~k~~k~~~~~ 239 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAV-----LPCVTLGSKASKK---------KKKKGKRSNSA 239 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccc-----ccceeechhhhhh---------hhhhccccccc
Confidence 3346777743 3789999999999999998642111 1111111000000 00011111234
Q ss_pred ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC-
Q 042146 97 IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~- 173 (262)
.+|...|..++|+. -.+.|++|+.|.+|++||+.++++..++..|.++|.++.|+| .+..|++|+.|+++.+.|.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 57888999999987 456799999999999999999999999999999999999999 667999999999999999994
Q ss_pred --------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146 174 --------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI 232 (262)
Q Consensus 174 --------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (262)
.....+++++.||.++-+|+|.. +++.+++. |.++|.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A----------------------Hd~~IS 377 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA----------------------HDDEIS 377 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe----------------------ccCCcc
Confidence 45678889999999999999974 88888887 999999
Q ss_pred EEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146 233 SVASHPAK-NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 233 ~~~~~p~~-~~l~~~~~d~d~~i~iw~~~ 260 (262)
++++++.- .+++|++ .|+.|++|++.
T Consensus 378 gl~~n~~~p~~l~t~s--~d~~Vklw~~~ 404 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTAS--TDKVVKLWKFD 404 (463)
T ss_pred eEEecCCCCcceeecc--ccceEEEEeec
Confidence 99999865 4678888 89999999985
No 113
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-24 Score=168.15 Aligned_cols=199 Identities=22% Similarity=0.405 Sum_probs=170.2
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
.+.+..++..|...|+.++|+|....|++++.||+|++|+++..... +...-+
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------------------~~~~~e 335 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------------------AEKDVE 335 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------------------ccccee
Confidence 35566688889999999999999999999999999999998541100 011345
Q ss_pred cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC----------eeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG----------KCLKVLPAHSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (262)
++.++.+|.++|.|+++.+++..+++|+.||+|+.|++... .....+.+|.+.++.+++|+....|++|+
T Consensus 336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs 415 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS 415 (577)
T ss_pred eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec
Confidence 77889999999999999999999999999999999965421 23446778999999999999989999999
Q ss_pred CCCeEEEEeCCC--------------------------------------------------------------------
Q 042146 162 YDGLYRILDAST-------------------------------------------------------------------- 173 (262)
Q Consensus 162 ~dg~i~~~d~~~-------------------------------------------------------------------- 173 (262)
.||++++|+...
T Consensus 416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 999999998654
Q ss_pred ---CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146 174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN 250 (262)
Q Consensus 174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 250 (262)
++..+.+++.+|+.|+++|..+++++..... |...++++++.|+|.+|++++ .
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a----------------------~~~svtslai~~ng~~l~s~s--~ 551 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA----------------------HKDSVTSLAIDPNGPYLMSGS--H 551 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchheee----------------------ccceecceeecCCCceEEeec--C
Confidence 6678888999999999999999999888776 889999999999999999999 9
Q ss_pred CCcEEEEeecc
Q 042146 251 DRTMKIWTQEK 261 (262)
Q Consensus 251 d~~i~iw~~~~ 261 (262)
|+.+++|++..
T Consensus 552 d~sv~l~kld~ 562 (577)
T KOG0642|consen 552 DGSVRLWKLDV 562 (577)
T ss_pred Cceeehhhccc
Confidence 99999999853
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.2e-24 Score=169.94 Aligned_cols=215 Identities=16% Similarity=0.345 Sum_probs=164.1
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCcccc-----CCc------cccccceeEEEEec
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFT-----GHE------QGISDLATIRLWDV 87 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~-----~~~------~~v~~~~~i~v~d~ 87 (262)
.+...++..+++-..++.++. ..+++|.+......... .......+. .+. ......+.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 345677888899888888885 57888877653211100 000000000 000 11122238999999
Q ss_pred CC---CccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEEeC
Q 042146 88 PT---ATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSY 162 (262)
Q Consensus 88 ~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 162 (262)
.. .+.+..+..|...++++.|++ ...+|++|+.||+|++||++..+...++.+....|.++.|+| .+..|+++..
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 87 455667889999999999999 677899999999999999999988888888888999999999 6789999999
Q ss_pred CCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCce--eeEEeccCCceeEEEEEEecC
Q 042146 163 DGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 163 dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 219 (262)
.|.+.+||+|. |++.+||+|+.|+.|+|||..+.+. +.++.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------------- 261 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---------------- 261 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----------------
Confidence 99999999998 8999999999999999999986443 33333
Q ss_pred CCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 220 NGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
...+|.++.|-|..+ .||++++-.|-.|+|||+..
T Consensus 262 -------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 262 -------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred -------ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 456899999999865 57777655689999999864
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=167.73 Aligned_cols=234 Identities=19% Similarity=0.329 Sum_probs=179.1
Q ss_pred CCceeeec--ccccceec-ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC---------CCCCCCCCccccC
Q 042146 4 DRSLESFR--PYTLTQTL-NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF---------DSTPPSPLQKFTG 71 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~ 71 (262)
.|.+..|+ ..+++..+ ..|.+.|....|.|....+++++.|+.+++|=.+..... ...++..+..+..
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence 35555554 45555444 489999999999999999999999999999976632110 0111111110000
Q ss_pred Cc-------------------------------------c-----------ccccce--------------------eEE
Q 042146 72 HE-------------------------------------Q-----------GISDLA--------------------TIR 83 (262)
Q Consensus 72 ~~-------------------------------------~-----------~v~~~~--------------------~i~ 83 (262)
.. . ++...+ ..+
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence 00 0 000000 677
Q ss_pred EEecCCCcc-ceec-----ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccCC
Q 042146 84 LWDVPTATS-LKTL-----IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRDG 154 (262)
Q Consensus 84 v~d~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~ 154 (262)
.|+..+... ...+ +.-...+++++.++.|++.+.|+..|.|-+|++++|-....+ ..|.++|+.++...-+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 888766543 2222 223367899999999999999999999999999999888887 5899999999999989
Q ss_pred CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 155 TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
+.+++++.+|.++.||... .....++.+..|-.|+++|..+.+.++.|.+
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g----------- 574 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG----------- 574 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------
Confidence 9999999999999999876 3456788889999999999999999999998
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|++++|||||+.|++++ .|++|++||+..
T Consensus 575 -----------h~nritd~~FS~DgrWlisas--mD~tIr~wDlpt 607 (910)
T KOG1539|consen 575 -----------HGNRITDMTFSPDGRWLISAS--MDSTIRTWDLPT 607 (910)
T ss_pred -----------cccceeeeEeCCCCcEEEEee--cCCcEEEEeccC
Confidence 999999999999999999999 889999999864
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=9.4e-22 Score=152.04 Aligned_cols=233 Identities=16% Similarity=0.183 Sum_probs=164.2
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCC-CCCCcc--ccCCccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTP-PSPLQK--FTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~--~~~~~~~ 75 (262)
+.|+.+..|+ ..+..+.+..|.. +.+++|+|+++.+ ++++.++.|++||........... ...... +......
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKI 86 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCE
Confidence 3578888887 4556777776544 6789999999876 567889999999987643322111 111111 1111111
Q ss_pred c--c--cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 76 I--S--DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 76 v--~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
+ . ..+.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++....... ......++|
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 164 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF 164 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence 1 1 134899999988777666643 33468899999999999888765 567789988877665543 344578999
Q ss_pred ccCCCEEEEE-eCCCeEEEEeCCC---------------------------CCccEEEE-EcCCCeEEEEecCCCceeeE
Q 042146 151 NRDGTMIVTS-SYDGLYRILDAST---------------------------PNGKFILV-GTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 151 ~~~~~~l~~~-~~dg~i~~~d~~~---------------------------~~~~~l~~-~~~dg~i~i~d~~~~~~~~~ 201 (262)
+|+++.|+++ ..++.|++||+.+ ++++++++ ...++.+.+||+++++.+..
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9999987554 4699999999864 35665444 34566899999988877665
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+. +...+.+++|+|++++|++++. .++.|++||++.
T Consensus 245 ~~-----------------------~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~ 280 (300)
T TIGR03866 245 LL-----------------------VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAA 280 (300)
T ss_pred EE-----------------------eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECCC
Confidence 43 4457889999999999988642 589999999864
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.6e-23 Score=148.08 Aligned_cols=185 Identities=18% Similarity=0.326 Sum_probs=151.3
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
+..+++ |.. -.|+.|++.|.+||+|..||.|.|||+. +...-+
T Consensus 17 l~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-----------------------------------T~~iar 59 (405)
T KOG1273|consen 17 LTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFD-----------------------------------TFRIAR 59 (405)
T ss_pred hceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEcc-----------------------------------ccchhh
Confidence 344443 333 7899999999999999999999888654 445566
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~ 173 (262)
.+.+|..+|++++|+++|+.|+++|.|..|.+||+..+.+++.+. ..++|+.+.|+|.. +..+++-.+..-.+-++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 788899999999999999999999999999999999999999886 58899999999944 3444443333333433331
Q ss_pred ------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 174 ------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 174 ------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
+.|+++++|+..|.+.++|..+.+++..++-. ...
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit---------------------s~~ 197 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT---------------------SVQ 197 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec---------------------hhe
Confidence 56899999999999999999999999888751 225
Q ss_pred ceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 230 PVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.|..+.++..|+.|+.-+ .|..||.|+++
T Consensus 198 ~IK~I~~s~~g~~liiNt--sDRvIR~ye~~ 226 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINT--SDRVIRTYEIS 226 (405)
T ss_pred eeeEEEEeccCcEEEEec--CCceEEEEehh
Confidence 789999999999999999 89999999975
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6e-23 Score=148.20 Aligned_cols=183 Identities=19% Similarity=0.329 Sum_probs=142.9
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
|+||+++.|+ ...+...+ .|..++.+++|.++ ..+++|+.||.|+.+|+..
T Consensus 32 sWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~------------------------- 84 (323)
T KOG1036|consen 32 SWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT------------------------- 84 (323)
T ss_pred eccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecC-------------------------
Confidence 5799999986 33344444 58999999999874 4699999999999887643
Q ss_pred eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (262)
+. ...+..|..+|.||..++....+++|+.|++|++||.+.......+.. ...|.++... ++.|++
T Consensus 85 ----------~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvV 150 (323)
T KOG1036|consen 85 ----------GN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVV 150 (323)
T ss_pred ----------Cc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEE
Confidence 22 234456888999999998888899999999999999887555555543 3467777654 677888
Q ss_pred EeCCCeEEEEeCCC------------------------------------------------------------------
Q 042146 160 SSYDGLYRILDAST------------------------------------------------------------------ 173 (262)
Q Consensus 160 ~~~dg~i~~~d~~~------------------------------------------------------------------ 173 (262)
|+.|..+.+||+|.
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 88888888888876
Q ss_pred -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146 174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242 (262)
Q Consensus 174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 242 (262)
|-...|++|+.||.|.+||+.+.+.+..+.. .+..|.+++|+.+|..
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----------------------~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----------------------YETSISSLSFSMDGSL 288 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----------------------CCCceEEEEeccCCCe
Confidence 4456689999999999999988888887765 4567999999999999
Q ss_pred EEEee
Q 042146 243 IASGA 247 (262)
Q Consensus 243 l~~~~ 247 (262)
||+++
T Consensus 289 LAia~ 293 (323)
T KOG1036|consen 289 LAIAS 293 (323)
T ss_pred EEEEe
Confidence 99987
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=160.41 Aligned_cols=215 Identities=17% Similarity=0.253 Sum_probs=174.3
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC----CCCCCCCccccCC-c---cccccceeEEEEecCCCccc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD----STPPSPLQKFTGH-E---QGISDLATIRLWDVPTATSL 93 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~-~---~~v~~~~~i~v~d~~~~~~~ 93 (262)
-..+|.+|||+.+.+.||.+-.||.|.+|++....... ..+...+..+... . ..+..-+.|.-||+.++++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 46889999999999999999999999999987632211 1111111111111 1 11222338999999999999
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
..+....+.|.+++.+|.+..++.|++||.++.++...++... .+...++.|.++.|+|++..+++|+.||.|++||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 9999999999999999999999999999988888877776543 34445789999999999999999999999999998
Q ss_pred CC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeE
Q 042146 172 ST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI 224 (262)
Q Consensus 172 ~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
.. -....+++|...|.|++||...+.+++.+..
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~-------------------- 243 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC-------------------- 243 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh--------------------
Confidence 77 2456789999999999999999999998887
Q ss_pred EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 225 ~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|.+.|.+++..+++.+++++| -|+.|.-+...
T Consensus 244 --h~adVl~Lav~~~~d~vfsaG--vd~~ii~~~~~ 275 (691)
T KOG2048|consen 244 --HDADVLALAVADNEDRVFSAG--VDPKIIQYSLT 275 (691)
T ss_pred --hhcceeEEEEcCCCCeEEEcc--CCCceEEEEec
Confidence 889999999999999999999 78988877654
No 120
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=6.2e-23 Score=161.13 Aligned_cols=223 Identities=19% Similarity=0.353 Sum_probs=161.8
Q ss_pred CCCCceeeecccccc--------eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146 2 SSDRSLESFRPYTLT--------QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73 (262)
Q Consensus 2 s~d~~i~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 73 (262)
..||.|..++..+.. ..+..|...|..+.|-|-...|++++.|.+++.||+..
T Consensus 71 dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~------------------- 131 (720)
T KOG0321|consen 71 DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT------------------- 131 (720)
T ss_pred cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-------------------
Confidence 357777777643322 33567999999999999667899999999999886643
Q ss_pred cccccceeEEEEecCCCccce--ecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe-----------------
Q 042146 74 QGISDLATIRLWDVPTATSLK--TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK----------------- 133 (262)
Q Consensus 74 ~~v~~~~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~----------------- 133 (262)
.+... .+.+|...|.+++|.| +...|++|+.||.|.|||++-..
T Consensus 132 ----------------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 132 ----------------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred ----------------ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 33333 3778999999999999 56678999999999999997431
Q ss_pred ----------eeeeeecCCCCeee---EEEccCCCEEEEEeC-CCeEEEEeCCC--------------------------
Q 042146 134 ----------CLKVLPAHSDPVTA---IDFNRDGTMIVTSSY-DGLYRILDAST-------------------------- 173 (262)
Q Consensus 134 ----------~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~~d~~~-------------------------- 173 (262)
.++.-.++...|.+ +.+..|...|++++. |+.|++||++.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01111234444555 556678889999987 99999999987
Q ss_pred -----CCccEEEEEcCCCeEEEEecCCC--ceeeEEeccCCceeEEEEEEecCCCeeE----------------------
Q 042146 174 -----PNGKFILVGTLDNTLRLWNYSTR--KILKTYSGYTNSKYCISSTFSVTNGKYI---------------------- 224 (262)
Q Consensus 174 -----~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 224 (262)
..|.+|++.+.|+.|+.||+..- .++..+.++...-.-+....++.+..++
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh
Confidence 35688888888999999999853 3445555544444444444443333333
Q ss_pred -EccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeecc
Q 042146 225 -VSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 225 -~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+|.-.|++++|.|.. .-++|++ +|..++||++.+
T Consensus 356 l~Ght~eVt~V~w~pS~~t~v~TcS--dD~~~kiW~l~~ 392 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATTPVATCS--DDFRVKIWRLSN 392 (720)
T ss_pred hhCcceEEEEEeeccccCCCceeec--cCcceEEEeccC
Confidence 3388899999998853 2366667 899999999854
No 121
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.4e-23 Score=150.73 Aligned_cols=145 Identities=25% Similarity=0.469 Sum_probs=127.9
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC------------------eeeeeeecCCCCeeeEEEccCCC
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG------------------KCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
..+..|+.++.+.+|+|||.++++|+.|..|+|.|++.. -.++++..|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 345679999999999999999999999999999998621 24667778999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
.|++++.|++|++||... |.|.+|++|+.-..+++||+.+.++...-...+.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q------ 259 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ------ 259 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc------
Confidence 999999999999999876 8999999999999999999998877554432111
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|.+.|+++.+++.+++.+|++ .||.|++||-
T Consensus 260 -------------ht~ai~~V~Ys~t~~lYvTaS--kDG~IklwDG 290 (430)
T KOG0640|consen 260 -------------HTGAITQVRYSSTGSLYVTAS--KDGAIKLWDG 290 (430)
T ss_pred -------------cccceeEEEecCCccEEEEec--cCCcEEeecc
Confidence 999999999999999999999 9999999984
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=8.4e-23 Score=156.90 Aligned_cols=219 Identities=19% Similarity=0.292 Sum_probs=167.2
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC----ccccCCcccccc----------------ce
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL----QKFTGHEQGISD----------------LA 80 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~v~~----------------~~ 80 (262)
.....|++++|++.|..|++.+.....+|+|.+.....+...+... ..-.+|...+.+ .+
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 3456799999999999999999899999999877544333332211 112233333322 33
Q ss_pred eEEEEecCCCccceec------ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--e-eeeeecCCC--CeeeEE
Q 042146 81 TIRLWDVPTATSLKTL------IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--C-LKVLPAHSD--PVTAID 149 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~-~~~~~~~~~--~v~~~~ 149 (262)
++++||+...+..... .+..-+++.++|+|+++++|+|+.||.|.+|+..+.. + ...-.+|.. .|+|+.
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence 9999999875433222 2233578999999999999999999999999975432 1 233356776 899999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEc------CCCeEEEEecCCCceee
Q 042146 150 FNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGT------LDNTLRLWNYSTRKILK 200 (262)
Q Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~------~dg~i~i~d~~~~~~~~ 200 (262)
||++|++|++-+.|+++++||++. |+.+++++|+ ..|.+.+||..+.+.+.
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 999999999999999999999997 8889999986 34789999999988888
Q ss_pred EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN 241 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 241 (262)
.+.-. ...+..+.|++.-++++++....-..+-|+|+..
T Consensus 452 ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 452 KIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred EecCC--CceEEEEeecchhhheeeecCCCceEEEECcccc
Confidence 87654 5667788899999999999887777888887643
No 123
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=7.8e-23 Score=152.27 Aligned_cols=195 Identities=21% Similarity=0.388 Sum_probs=153.3
Q ss_pred ecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 18 TLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
.+.||+++|..++|+| +...+|+||.|.+|.||.+...... ..-.+++..+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------------------~~ltepvv~L 127 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------------------RDLTEPVVEL 127 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------------------cCcccceEEE
Confidence 3468999999999999 5678999999999999987652211 0112567788
Q ss_pred ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146 97 IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 173 (262)
.+|...|.-++|+| -.+.|++++.|.+|.+||+.+++.+..+. |...|.++.|+.+|.+|++.+.|+.|++||.+.
T Consensus 128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 99999999999999 56788999999999999999999888887 999999999999999999999999999999987
Q ss_pred -------------------CCccEEEEEc---CCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 174 -------------------PNGKFILVGT---LDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 174 -------------------~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
.++..+-+|- .+..+-+||..+.+....+...+ ....|
T Consensus 207 ~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--------------------tSnGv 266 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--------------------TSNGV 266 (472)
T ss_pred EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec--------------------cCCce
Confidence 4555444442 45678888876543322222111 33456
Q ss_pred EEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146 232 ISVASHPAKNIIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~ 262 (262)
.---|.|+..+++.+|- .|+.||.|.+.++
T Consensus 267 l~PFyD~dt~ivYl~GK-GD~~IRYyEit~d 296 (472)
T KOG0303|consen 267 LLPFYDPDTSIVYLCGK-GDSSIRYFEITNE 296 (472)
T ss_pred EEeeecCCCCEEEEEec-CCcceEEEEecCC
Confidence 66678999998887775 5999999998754
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.8e-22 Score=145.50 Aligned_cols=207 Identities=17% Similarity=0.280 Sum_probs=149.7
Q ss_pred CCCCceeeeccc---c-cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFRPY---T-LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~~~---~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|.|++++.|+-. . .-+....|.++|.+++|+.||..+++|+.|+.+++||+.
T Consensus 47 SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~------------------------ 102 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA------------------------ 102 (347)
T ss_pred ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc------------------------
Confidence 689999999621 1 224556799999999999999999999999998888654
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCC--EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN--RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
++ .+..+..|.++|.++.|-+... .|++||.|.+|+.||.+...++.++.- .+.+.++..- ..
T Consensus 103 -----------S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~p 167 (347)
T KOG0647|consen 103 -----------SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YP 167 (347)
T ss_pred -----------CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--Cc
Confidence 44 4556677999999999988554 799999999999999999888877753 4556665543 34
Q ss_pred EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCC--ceeeEEeccCC----
Q 042146 156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR--KILKTYSGYTN---- 207 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---- 207 (262)
+++++..++.|.+|+++. .+.+..+.|+.+|.+.|..+..+ +.-.+|+-|..
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 677777788888888765 34455577777777777766654 22233333321
Q ss_pred --ceeEE-EEEEecCCCeeEEc----------------------cccceEEEEEcCCCCeEEEee
Q 042146 208 --SKYCI-SSTFSVTNGKYIVS----------------------HRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 208 --~~~~~-~~~~~~~~~~~~~~----------------------~~~~v~~~~~~p~~~~l~~~~ 247 (262)
.++.+ .++|.+.-+.++.. |..+|++++|+.+|.++|.+.
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 13332 34455444443322 888999999999999988764
No 125
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=9.7e-23 Score=148.44 Aligned_cols=153 Identities=21% Similarity=0.402 Sum_probs=117.2
Q ss_pred ccCcCceEEEEEcc-----CCCeEEEecCCCeEEEeecCCCC---CC----CCCCCCC----CccccCCc-cccc----c
Q 042146 20 NGHLRAVSYVKFSH-----DGRLLTSSSAEKTLLTYSLSSIS---NF----DSTPPSP----LQKFTGHE-QGIS----D 78 (262)
Q Consensus 20 ~~h~~~v~~~~~~~-----~~~~l~s~~~d~~i~iw~~~~~~---~~----~~~~~~~----~~~~~~~~-~~v~----~ 78 (262)
+.|..+|..++|++ +-..+|+++. +.+.+|...... .. +....+. ...+.... .+.. .
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 56889999999985 2345666654 678888875422 00 1111111 11111121 1221 3
Q ss_pred ceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccCC
Q 042146 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRDG 154 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~ 154 (262)
.+.|+|.|..+++....+.+|...|+.|.++| ..++++++|.|..|++|++++..++..+ .+|.+.|.++.|+++|
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 34899999999999999999999999999999 5578899999999999999999998887 5699999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 042146 155 TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~ 173 (262)
.++++|+.|..+++|++..
T Consensus 194 d~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred CeeeccCCcceEEEEecCh
Confidence 9999999999999999984
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-22 Score=145.54 Aligned_cols=215 Identities=21% Similarity=0.362 Sum_probs=165.2
Q ss_pred ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc----------ceeEEEEecC
Q 042146 20 NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD----------LATIRLWDVP 88 (262)
Q Consensus 20 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------~~~i~v~d~~ 88 (262)
.+|.-.|.++.|-| |.-+|.+++-|.++++||..+.+.....+.. -..+..+..++.. .-.|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47889999999999 5668899999999999998775443222111 1111111111111 1189999999
Q ss_pred CCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCC-eeeee--------------eecCCCCeeeEEEcc
Q 042146 89 TATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTG-KCLKV--------------LPAHSDPVTAIDFNR 152 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~-~~~~~--------------~~~~~~~v~~~~~~~ 152 (262)
.|...+++.+|.+.|.++.|+|...+ |++|+.||.|++||++.. -+... -..|.+.+..++|..
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999997665 689999999999999854 22222 235778899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146 153 DGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207 (262)
Q Consensus 153 ~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 207 (262)
++.++++++.|..+++|+..+ .+...++---.++.+.++++-.+..+..+..
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--- 333 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--- 333 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec---
Confidence 999999999999999999876 1222222233447788888888888888877
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|-..|.|.++-|+-+...++. -|+.|..|-+
T Consensus 334 -------------------h~k~i~c~~~~~~fq~~~tg~--~d~ni~~w~p 364 (397)
T KOG4283|consen 334 -------------------HLKRINCAAYRPDFEQCFTGD--MNGNIYMWSP 364 (397)
T ss_pred -------------------ccceeeEEeecCchhhhhccc--cCCccccccc
Confidence 888899999999999999999 7899999965
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.4e-22 Score=151.32 Aligned_cols=223 Identities=17% Similarity=0.319 Sum_probs=161.8
Q ss_pred cccceecccCcCceEEEEEccCC--CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc-----------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDG--RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL----------- 79 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------- 79 (262)
+.....++.|.++|++++|+|.. +++|+|..-|+|-+||+.... ........+..|...|..+
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhhee
Confidence 34455667789999999999964 589999999999999995210 0000011111111111111
Q ss_pred -------------------------------------------------eeEEEEecCCCcc-ceecccCCcceEEEEEe
Q 042146 80 -------------------------------------------------ATIRLWDVPTATS-LKTLIGHTNYVFCINFN 109 (262)
Q Consensus 80 -------------------------------------------------~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~ 109 (262)
+...+||++++.. ...+.-|+..|.+++++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 0567888877654 55566788899999999
Q ss_pred C-CCCEEEeecCCCeEEEEECCCCee----eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146 110 P-QSNRIVSDTFNETIRIWDIKTGKC----LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173 (262)
Q Consensus 110 ~-~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------- 173 (262)
| ...++++++.|++++|||++.-.. ......|...|.+..|||.+-.|++.+.|..|++||..-
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9 566789999999999999985322 222346999999999999877799999999999999841
Q ss_pred ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE-EE
Q 042146 174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI-SV 234 (262)
Q Consensus 174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~ 234 (262)
|+..++++|-.-..|-|+|-..++.+..+.... ...|. -.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~---------------------~~tI~~vn 470 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE---------------------SSTIPSVN 470 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc---------------------ccccccce
Confidence 888999999988899999998888787765421 11233 34
Q ss_pred EEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 235 ASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 235 ~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.|||-+..+++|+. .-|.|.||.-++
T Consensus 471 ~~HP~~~~~~aG~~-s~Gki~vft~k~ 496 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGN-SSGKIYVFTNKK 496 (498)
T ss_pred eecccccceeccCC-ccceEEEEecCC
Confidence 79999996666653 688999987543
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.1e-23 Score=158.36 Aligned_cols=229 Identities=17% Similarity=0.303 Sum_probs=180.3
Q ss_pred Cceeeecc-----cccceeccc--CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCcc--ccC-C
Q 042146 5 RSLESFRP-----YTLTQTLNG--HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQK--FTG-H 72 (262)
Q Consensus 5 ~~i~~~~~-----~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~--~~~-~ 72 (262)
|.|++|+- ..++..+.- ...-|+++.+.|||+.|++|+.-.++.|||+......-.. ......+ +.. -
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 519 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence 45666652 223444432 3566999999999999999999999999998653211100 0000000 000 0
Q ss_pred cc----ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeE
Q 042146 73 EQ----GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAI 148 (262)
Q Consensus 73 ~~----~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 148 (262)
.. .....+.|.|||+.+...++.+++|.+.+.||.++++|..|-+|+-|.+|+.||+++++.+.... ..+.|.++
T Consensus 520 DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSL 598 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSL 598 (705)
T ss_pred ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheec
Confidence 11 11233489999999999999999999999999999999999999999999999999998776653 57889999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 149 DFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
-++|++.+++.|-.++.+-+..... +.|+++++.+.|..+..|...-|..+...+
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------ 672 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------ 672 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------
Confidence 9999999999999999998888765 679999999999999999998888877666
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
-...|.++..+.+.++++||+ .|....||.+
T Consensus 673 -----------------E~SsVlsCDIS~ddkyIVTGS--GdkkATVYeV 703 (705)
T KOG0639|consen 673 -----------------ESSSVLSCDISFDDKYIVTGS--GDKKATVYEV 703 (705)
T ss_pred -----------------ccCcceeeeeccCceEEEecC--CCcceEEEEE
Confidence 556899999999999999999 8888888875
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8e-22 Score=143.12 Aligned_cols=234 Identities=21% Similarity=0.342 Sum_probs=170.6
Q ss_pred CCCc--eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC-CCCCCCCccccCCcccccc-
Q 042146 3 SDRS--LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD-STPPSPLQKFTGHEQGISD- 78 (262)
Q Consensus 3 ~d~~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~- 78 (262)
.||. |+++.++.+-+.+.+|..+|.+++||++|+.|+|+|.|..|.+||+..+.... ..-..++.....|......
T Consensus 43 ~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 43 ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 3565 45556888999999999999999999999999999999999999987654221 1112222222222222111
Q ss_pred ce-----eEEEEecCCCccc-eecc---cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-CCeeeE
Q 042146 79 LA-----TIRLWDVPTATSL-KTLI---GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-DPVTAI 148 (262)
Q Consensus 79 ~~-----~i~v~d~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~ 148 (262)
+. .-.+.++..+... .... .....-.+..|++.|+++++|...|.+.++|.++.+++..++.-. ..|..+
T Consensus 123 va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 123 VATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI 202 (405)
T ss_pred EEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE
Confidence 00 1112222211100 0000 011122234588899999999999999999999999998887655 789999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC-------------------------------CCccEEEEEcC-CCeEEEEecCCC
Q 042146 149 DFNRDGTMIVTSSYDGLYRILDAST-------------------------------PNGKFILVGTL-DNTLRLWNYSTR 196 (262)
Q Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------------~~~~~l~~~~~-dg~i~i~d~~~~ 196 (262)
.++..|+.|+.-+.|+.|+.|+++. .+|.|+++|+. ...++||....|
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 9999999999999999999999874 67888888873 358999999999
Q ss_pred ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+++.+.+. .......+.|+|-...+++-. .|.|++|...
T Consensus 283 sLVKILhG~---------------------kgE~l~DV~whp~rp~i~si~---sg~v~iw~~~ 322 (405)
T KOG1273|consen 283 SLVKILHGT---------------------KGEELLDVNWHPVRPIIASIA---SGVVYIWAVV 322 (405)
T ss_pred ceeeeecCC---------------------chhheeecccccceeeeeecc---CCceEEEEee
Confidence 999999872 225678899999999998884 6899999864
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.3e-23 Score=155.18 Aligned_cols=171 Identities=18% Similarity=0.364 Sum_probs=146.1
Q ss_pred eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEe
Q 042146 7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWD 86 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d 86 (262)
+|...++.++..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|.+....... +
T Consensus 107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~--------------------------~ 160 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD--------------------------N 160 (476)
T ss_pred EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc--------------------------c
Confidence 34446889999999999999999999999999999999999999874321100 1
Q ss_pred cCCCccceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 87 VPTATSLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
-.+..+++.+..|.-+|+.+...+. ..++++++.|.++++||+..+..+.++. ....+.+++.+|-++.++.|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 1134667788899999999998874 4689999999999999999999888875 577899999999999999999999
Q ss_pred eEEEEeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 165 LYRILDAST--------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 165 ~i~~~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.|.+.++.. .|+..|++|+.||.+.|||+...++++++..
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 999887654 5899999999999999999999999988875
No 131
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.8e-23 Score=150.75 Aligned_cols=179 Identities=25% Similarity=0.443 Sum_probs=147.6
Q ss_pred eeEEEEecCCCccceecc--------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEE
Q 042146 80 ATIRLWDVPTATSLKTLI--------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDF 150 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~ 150 (262)
+-|.+|+..+|+..+.++ -+..+|.|+.|+.|...+++|+.||.|++|.+++|.+++.+. +|...|+|+.|
T Consensus 235 GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F 314 (508)
T KOG0275|consen 235 GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF 314 (508)
T ss_pred ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence 379999998887655432 366899999999999999999999999999999999999986 89999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
+.|+..+++++.|.++++--+.+ ++|..+++++.||+|++|+..+++++.+++.......
T Consensus 315 SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~ 394 (508)
T KOG0275|consen 315 SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP 394 (508)
T ss_pred ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence 99999999999999999998877 7899999999999999999999999999886554433
Q ss_pred EEEEEEec-CCCeeEEc------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 211 CISSTFSV-TNGKYIVS------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 211 ~~~~~~~~-~~~~~~~~------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
...+...+ ....+++. ..+...+...+|.|.++.+.+ +|+.++.|.+.
T Consensus 395 vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~vlYCF~~~ 467 (508)
T KOG0275|consen 395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDGVLYCFSVL 467 (508)
T ss_pred ceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCcEEEEEEee
Confidence 33322221 12222222 334566778899999999999 99999998764
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=150.54 Aligned_cols=222 Identities=15% Similarity=0.204 Sum_probs=172.0
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce----eEEEEecCCC
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----TIRLWDVPTA 90 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~i~v~d~~~~ 90 (262)
......+|......++.+|+.+.++|++.|+.+++|+ +....+......+......|..++..++ ...+.|.++.
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc
Confidence 3345568999999999999999999999999999998 3333333333444555555655554444 6778899886
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
..+..... .+++++++|+|+|.+||.|+.|+.|++|-+..+ ...... +.+.++|+.+.|++|+++|.+-+.|-.|..
T Consensus 439 ~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 439 DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence 66555554 899999999999999999999999999988643 333333 334589999999999999999999999999
Q ss_pred EeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 169 LDAST--------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 169 ~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
|.... .+.+.+++|.+.|.|++|...--++...+..
T Consensus 518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he------ 591 (626)
T KOG2106|consen 518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE------ 591 (626)
T ss_pred EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee------
Confidence 95332 5678899999999999998664443332221
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
..+|...|++++|..+...|++.+ .|.+|..|++
T Consensus 592 -------------~~ghs~~vt~V~Fl~~d~~li~tg--~D~Si~qW~l 625 (626)
T KOG2106|consen 592 -------------YGGHSSHVTNVAFLCKDSHLISTG--KDTSIMQWRL 625 (626)
T ss_pred -------------eccccceeEEEEEeeCCceEEecC--CCceEEEEEe
Confidence 122899999999999999999999 8999999986
No 133
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-22 Score=157.64 Aligned_cols=157 Identities=23% Similarity=0.441 Sum_probs=139.2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 159 (262)
.|++|+..++.......-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lss 275 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSS 275 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEE
Confidence 567777777765444444478999999999999999999999999999999999999988 99999999998 678999
Q ss_pred EeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 160 SSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 160 ~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
|+.|+.|..+|++. +++.++++|+.|+.+.|||....++...+..
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-------------- 341 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-------------- 341 (484)
T ss_pred ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec--------------
Confidence 99999999999987 8999999999999999999987788888776
Q ss_pred CCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146 219 TNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|- ..+||+|+...|++|++|+...
T Consensus 342 --------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 342 --------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred --------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 9999999999995 6789999876899999999863
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=7.7e-21 Score=145.89 Aligned_cols=241 Identities=17% Similarity=0.296 Sum_probs=164.2
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCC--------eEEEeecCCCCCC---------------CCCC---------
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK--------TLLTYSLSSISNF---------------DSTP--------- 62 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--------~i~iw~~~~~~~~---------------~~~~--------- 62 (262)
..+.+.+|...|.||+.+|+.-.+++|-.-| .+++||..+.... ....
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4566789999999999999999899886666 4999993221100 0000
Q ss_pred ---CCCCccc--c--CCccccc----------------------cceeEEEEecCCCcccee---ccc-CCcceEEEEEe
Q 042146 63 ---PSPLQKF--T--GHEQGIS----------------------DLATIRLWDVPTATSLKT---LIG-HTNYVFCINFN 109 (262)
Q Consensus 63 ---~~~~~~~--~--~~~~~v~----------------------~~~~i~v~d~~~~~~~~~---~~~-~~~~v~~~~~~ 109 (262)
+..+..+ + .....+. .-+.+..|+.+.+...+. +.. .+..|.|++|.
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 0000000 0 0000110 001889999887765543 222 33679999999
Q ss_pred CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------
Q 042146 110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------- 173 (262)
Q Consensus 110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------- 173 (262)
++|. +++|.++|.|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|+.|..||-.-
T Consensus 256 engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 256 ENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIR 333 (626)
T ss_pred CCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCee
Confidence 9876 67899999999999988887777779999999999999987655 99999999999322
Q ss_pred --------------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec-----
Q 042146 174 --------------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG----- 204 (262)
Q Consensus 174 --------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 204 (262)
|+.+.+++++.|+.+++|+ ..+++.+..-
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~ 411 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAE 411 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCcee
Confidence 7788999999999999999 3444433321
Q ss_pred ----cCCceeEEE------EEEecCCCeeEEc--cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 205 ----YTNSKYCIS------STFSVTNGKYIVS--HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 205 ----~~~~~~~~~------~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...+..+. +.+......++.- ...++++++|+|+|.+||.|+ .|+.|+||.+..
T Consensus 412 ~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs--~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 412 CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS--HDNHIYIYRVSA 478 (626)
T ss_pred EeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec--CCCeEEEEEECC
Confidence 111111110 0111112222221 467899999999999999999 999999998864
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-21 Score=142.12 Aligned_cols=159 Identities=18% Similarity=0.347 Sum_probs=128.4
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCC--eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGR--LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|+|.+|.+|+ .......+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+.
T Consensus 60 ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~------------------------- 114 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV------------------------- 114 (362)
T ss_pred CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc-------------------------
Confidence 5789999886 4556778888999999999998764 8999999999888854
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-----------------
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----------------- 140 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------- 140 (262)
.....+.++++|.+.|+.++++|.+++.++.+.|+.+++||+-+|+.-..++-
T Consensus 115 ----------~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 ----------GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred ----------CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 45677889999999999999999999999999999999999977643221110
Q ss_pred ----------------------CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCc
Q 042146 141 ----------------------HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNG 176 (262)
Q Consensus 141 ----------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~ 176 (262)
....+.++.|- ++..|++|..|+.|.+||..+ +.+
T Consensus 185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 185 VSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 01123444443 466788888899999999885 678
Q ss_pred cEEEEEcCCCeEEEEecCCC
Q 042146 177 KFILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d~~~~ 196 (262)
.+|++++.||.|++||++..
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 89999999999999999865
No 136
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=145.12 Aligned_cols=233 Identities=17% Similarity=0.283 Sum_probs=167.9
Q ss_pred CCCceeeeccc--ccceecccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCC-----CCCCCCccccCC-
Q 042146 3 SDRSLESFRPY--TLTQTLNGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDS-----TPPSPLQKFTGH- 72 (262)
Q Consensus 3 ~d~~i~~~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~-----~~~~~~~~~~~~- 72 (262)
+.|+++.|++. +.+..+++|+..++.++|.. ....+.+++.||+|++||+........ .++.+...+...
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 46888888754 48999999999999999977 466899999999999999876433221 112233333221
Q ss_pred c--------cccccceeEEEEecCCCcc-ceec-ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe----eeee
Q 042146 73 E--------QGISDLATIRLWDVPTATS-LKTL-IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK----CLKV 137 (262)
Q Consensus 73 ~--------~~v~~~~~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~----~~~~ 137 (262)
. ......+.|.+||++..+. +..+ ..|...|++++|+| +.++|++||.||.|.++|++... ++..
T Consensus 128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 2 2233445899999998776 5544 56999999999999 77899999999999999997442 2334
Q ss_pred eecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC--------------------------------CCccEEEEE-c
Q 042146 138 LPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST--------------------------------PNGKFILVG-T 183 (262)
Q Consensus 138 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~--------------------------------~~~~~l~~~-~ 183 (262)
+ .|...|.++.|..++ +.+.+-+...+..+|++.. .+....+.+ +
T Consensus 208 i-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 208 I-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT 286 (376)
T ss_pred h-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc
Confidence 4 477889999999876 4588888999999999876 223333333 3
Q ss_pred CCCeEEEEecC---CC---ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 184 LDNTLRLWNYS---TR---KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 184 ~dg~i~i~d~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
..+...++-+. ++ +.+..+.+ +|..-|+++.|.-.+.++.||| +||.+.+|
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g---------------------~~~eiVR~i~~~~~~~~l~TGG--EDG~l~~W 343 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQG---------------------GHEEIVRDILFDVKNDVLYTGG--EDGLLQAW 343 (376)
T ss_pred ccCceeEEEeeecccccccCccccccC---------------------CcHHHHHHHhhhcccceeeccC--CCceEEEE
Confidence 24445444333 12 22222222 2778899999999999999999 99999999
Q ss_pred ee
Q 042146 258 TQ 259 (262)
Q Consensus 258 ~~ 259 (262)
+.
T Consensus 344 k~ 345 (376)
T KOG1188|consen 344 KV 345 (376)
T ss_pred ec
Confidence 84
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6.2e-22 Score=154.69 Aligned_cols=223 Identities=18% Similarity=0.273 Sum_probs=161.6
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-----------------------C------
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-----------------------P------ 65 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----------------------~------ 65 (262)
.-..+.+|++.|+|+...|.|.+|++|+.||+|+||.+.++......... .
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 45567899999999999999999999999999999998764321100000 0
Q ss_pred --------------Cccc-------------c-C--------------Cccccccce------------------eEEEE
Q 042146 66 --------------LQKF-------------T-G--------------HEQGISDLA------------------TIRLW 85 (262)
Q Consensus 66 --------------~~~~-------------~-~--------------~~~~v~~~~------------------~i~v~ 85 (262)
.... . . |...+..+. .|.|.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 0000 0 0 000000000 45555
Q ss_pred ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146 86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165 (262)
Q Consensus 86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 165 (262)
++........++...+.|.++.|+|...+|++++. ..|++||+..+..+..+......|..++.+|.|..|+.++.|+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 55555544555556678999999999888888874 68999999988887777766778999999999999999999999
Q ss_pred EEEEeCCC---------------------CCccEEEEEcCCCeEEEEecC------CCc---eeeEEeccCCceeEEEEE
Q 042146 166 YRILDAST---------------------PNGKFILVGTLDNTLRLWNYS------TRK---ILKTYSGYTNSKYCISST 215 (262)
Q Consensus 166 i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~------~~~---~~~~~~~~~~~~~~~~~~ 215 (262)
+..||+.- +.-+++++|+.||++.|+.-. ... ++..+++|...
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~------- 703 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT------- 703 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-------
Confidence 99999875 456789999999999998532 111 33444442211
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
....|..+.|||....|++++ .||+|++|.
T Consensus 704 -----------~~~gVLd~~wHP~qpWLfsAG--Ad~tirlfT 733 (733)
T KOG0650|consen 704 -----------NDLGVLDTIWHPRQPWLFSAG--ADGTIRLFT 733 (733)
T ss_pred -----------cccceEeecccCCCceEEecC--CCceEEeeC
Confidence 233489999999999999999 999999983
No 138
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=2.7e-22 Score=142.12 Aligned_cols=222 Identities=18% Similarity=0.299 Sum_probs=159.1
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CCCCccccCCc-ccc---ccceeEEEE
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PSPLQKFTGHE-QGI---SDLATIRLW 85 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~-~~v---~~~~~i~v~ 85 (262)
-.+...+++|.+.|+++.|-.+++ |.+|..-|.|++|++++........ ...+..+..-. ... .-...+.+|
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence 345677889999999999988775 9999999999999998754322111 11111111000 000 001134444
Q ss_pred ecCCCc--------------------------------------c-----------ceec----ccCCcceEEEEEeC-C
Q 042146 86 DVPTAT--------------------------------------S-----------LKTL----IGHTNYVFCINFNP-Q 111 (262)
Q Consensus 86 d~~~~~--------------------------------------~-----------~~~~----~~~~~~v~~~~~~~-~ 111 (262)
++.... . +... .+..+.+.|..+.. +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 432200 0 0000 01224566666433 3
Q ss_pred CC--EEEeecCCCeEEEEECCCC----------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146 112 SN--RIVSDTFNETIRIWDIKTG----------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 112 ~~--~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 173 (262)
+. ++++|.++|.+.+||+.++ +.+.....|..+|.++.|.+.-+.=++++.+..+..|.+..
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 33 4678999999999999987 34444567999999999998666667888888888988754
Q ss_pred ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146 174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA 235 (262)
Q Consensus 174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 235 (262)
||++.+++++.|+.||||+.++.+++..++. |.+.|++++
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------------------Hsagvn~vA 300 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------------------HSAGVNAVA 300 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh----------------------hhcceeEEE
Confidence 8999999999999999999999999999987 999999999
Q ss_pred EcCCCCeEEEeeecCCCcEEEEee
Q 042146 236 SHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 236 ~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|+|+..++|.+| .|+.|.+|++
T Consensus 301 fspd~~lmAaas--kD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAAS--KDARISLWKL 322 (323)
T ss_pred eCCCCchhhhcc--CCceEEeeec
Confidence 999999999999 9999999986
No 139
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=6.8e-22 Score=139.85 Aligned_cols=156 Identities=22% Similarity=0.460 Sum_probs=136.7
Q ss_pred eEEEEecCCCcccee--cccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKT--LIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.+.+|+++..+.... .++|.+.|..++|+| ...++++++.|.+|++||++++++...+... +.-.-+.|+|+|.++
T Consensus 43 tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 43 TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYI 121 (313)
T ss_pred ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEE
Confidence 799999987765543 568998999999998 7788999999999999999999999988654 444568899999999
Q ss_pred EEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 158 VTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
+++..|..|...|.+. .++++++..+..|+|.|......+++..++.
T Consensus 122 ~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-------------- 187 (313)
T KOG1407|consen 122 AVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-------------- 187 (313)
T ss_pred EEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--------------
Confidence 9999999999999987 4566777777789999999999999999988
Q ss_pred CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|.....|+.|+|+|++||+|+ .|..+.+||+++
T Consensus 188 --------H~snCicI~f~p~GryfA~Gs--ADAlvSLWD~~E 220 (313)
T KOG1407|consen 188 --------HPSNCICIEFDPDGRYFATGS--ADALVSLWDVDE 220 (313)
T ss_pred --------CCcceEEEEECCCCceEeecc--ccceeeccChhH
Confidence 888899999999999999999 899999999864
No 140
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=9.9e-23 Score=143.37 Aligned_cols=177 Identities=25% Similarity=0.398 Sum_probs=145.0
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---------------
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI--------------- 76 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v--------------- 76 (262)
+...++.+ .|..-|.+++|+.|.++|++|+.++.+||+|++.... +..++.+|..++
T Consensus 90 tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-------pp~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 90 TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-------PPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-------CchhhcCCCCcceeEEEeccCceEEee
Confidence 45566777 4899999999999999999999999999999876322 122233333332
Q ss_pred ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
....+|++||.+++..++++. .+.+|+++.++++|+++.++. .+.|.+||..+..++..++. ...|.+...+|+...
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEF 238 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCce
Confidence 234489999999999998886 567899999999999887765 57899999999888887753 567899999999999
Q ss_pred EEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146 157 IVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKIL 199 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~ 199 (262)
+++|+.|..++.||..+ |+|...++|++||+|++|....++..
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999876 89999999999999999998766543
No 141
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=150.94 Aligned_cols=172 Identities=28% Similarity=0.455 Sum_probs=128.0
Q ss_pred CCCCceeeec-----ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC---CC-------
Q 042146 2 SSDRSLESFR-----PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS---PL------- 66 (262)
Q Consensus 2 s~d~~i~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~------- 66 (262)
|.|.+.-.|. .+++.+++.+|..+|..+.||||.++|++++.|..+.+||..++......+.. ..
T Consensus 243 SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 243 SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred cCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 3455555553 46678999999999999999999999999999999999999875432211111 00
Q ss_pred ---ccccCC----------cc------------ccccce-----------------------------------------
Q 042146 67 ---QKFTGH----------EQ------------GISDLA----------------------------------------- 80 (262)
Q Consensus 67 ---~~~~~~----------~~------------~v~~~~----------------------------------------- 80 (262)
....+. .+ .+..++
T Consensus 323 Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 323 DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 000000 00 000110
Q ss_pred ---------------eEEEEecCCCccceecccCCcc--eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146 81 ---------------TIRLWDVPTATSLKTLIGHTNY--VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 81 ---------------~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (262)
.+++||++....+..+.+|+.. +-.-+|-- +..++++||+|+.|+||+.++++++.++.+|.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence 8899999988888899998854 33334433 56899999999999999999999999999999
Q ss_pred CCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q 042146 143 DPVTAIDFNR-DGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 143 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~ 173 (262)
..|++++|+| +..+||+|+.||+|++|....
T Consensus 483 ~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 483 KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999 667888888888888887653
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=154.59 Aligned_cols=156 Identities=17% Similarity=0.359 Sum_probs=123.3
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCee---eeeeecCCCCeeeEEEcc-C----------CCEEEEEeCCCeEEEE
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVLPAHSDPVTAIDFNR-D----------GTMIVTSSYDGLYRIL 169 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~-~----------~~~l~~~~~dg~i~~~ 169 (262)
-++.|+|....|.+...|..++|||++.-+. .+.+-.|...|+++.--| + ...|++|+.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 4567888888999999999999999986432 233445888888776655 1 2358999999999999
Q ss_pred eCCC---------------------------------------------------------CCccEEEEEcCCCeEEEEe
Q 042146 170 DAST---------------------------------------------------------PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 170 d~~~---------------------------------------------------------~~~~~l~~~~~dg~i~i~d 192 (262)
|+.. |++++|++|..-|.++||+
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 9765 8999999999999999999
Q ss_pred cCCCceeeEEeccCCceeEEEEEEecCCCeeEEc----------------------------------------------
Q 042146 193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS---------------------------------------------- 226 (262)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 226 (262)
+...+....+..|+.++.|+...+.....++++.
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence 9988888888888888888876655544444333
Q ss_pred ---------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 ---------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ---------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
....+..|+..|..+++++++ .|..|+||++++
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c--QDrnirif~i~s 627 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC--QDRNIRIFDIES 627 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe--cccceEEEeccc
Confidence 234577888888888889998 889999998864
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3.8e-22 Score=157.22 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=95.7
Q ss_pred cceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCC--------CCCccccCCcc--cc---ccce
Q 042146 15 LTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPP--------SPLQKFTGHEQ--GI---SDLA 80 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~--~v---~~~~ 80 (262)
-+..+.+|...|+.+.|+| +..+||++|.|..|+||.+..........+ .....+..|.. ++ ..-+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4556789999999999999 456899999999999999874322111111 11122333322 22 1222
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHS 142 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~ 142 (262)
.+++||+.+++.+..+.+|...|.++.|+.||.++++.+.|..|+|||.+. +++++...+|.
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence 899999999999999999999999999999999999999999999999984 34555555554
No 144
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.2e-21 Score=139.82 Aligned_cols=145 Identities=21% Similarity=0.437 Sum_probs=120.7
Q ss_pred eEEEEec-CCCccc--eec-----ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146 81 TIRLWDV-PTATSL--KTL-----IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151 (262)
Q Consensus 81 ~i~v~d~-~~~~~~--~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 151 (262)
.|+++|+ +.|+.. ... .+..+.|.|++|+| +.+.++.|+....+-||.-..+.++..+.+|.+.|+.+.|.
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence 6777777 333321 111 23367789999999 56688999988899898888888999999999999999999
Q ss_pred cCCCEEEEEe-CCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEecc
Q 042146 152 RDGTMIVTSS-YDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGY 205 (262)
Q Consensus 152 ~~~~~l~~~~-~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 205 (262)
++|+.|++|+ .|..|..||+|. |.+++|++|+.||.|++||+.+ |..+..+..
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~- 338 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN- 338 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-
Confidence 9999999998 478999999987 8899999999999999999987 665665554
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
+...++.++++|--+++||++
T Consensus 339 ---------------------~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 339 ---------------------YSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ---------------------ccccccceecCcccceeeecc
Confidence 888899999999999999987
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=147.00 Aligned_cols=184 Identities=17% Similarity=0.304 Sum_probs=143.0
Q ss_pred cCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 21 GHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 21 ~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
+|+..|.+++|+.. .+.||+||.|.+|++| |+.++++..++..|
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW-----------------------------------D~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLW-----------------------------------DVDTGKPKSSITHH 285 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEE-----------------------------------EcCCCCcceehhhc
Confidence 69999999999886 5589999999998887 55678888899999
Q ss_pred CcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC----
Q 042146 100 TNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST---- 173 (262)
Q Consensus 100 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~---- 173 (262)
...|.+++|+| .+.+|++|+.|++|.+.|.|........-...+.|-.++|.|.. ..++++..||+++-+|+|.
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 99999999999 67789999999999999999533222222346789999999954 5788888999999999998
Q ss_pred ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146 174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA 235 (262)
Q Consensus 174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 235 (262)
....++++++.|+.|++|++....+-.... +.- .-++..|++
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~-------------------~~~rl~c~~ 425 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSF-------------------KLGRLHCFA 425 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccc-------------------cccceeecc
Confidence 345789999999999999987544322111 100 123466788
Q ss_pred EcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 236 SHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 236 ~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.|+-. .++.|| ..+.++|||+..
T Consensus 426 ~~~~~a~~la~GG--~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 426 LDPDVAFTLAFGG--EKAVLRVWDIFT 450 (463)
T ss_pred cCCCcceEEEecC--ccceEEEeeccc
Confidence 888765 466666 778899999853
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=4.3e-21 Score=152.19 Aligned_cols=145 Identities=23% Similarity=0.469 Sum_probs=121.5
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCC-----eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNE-----TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
+.+.+|...|.+++.+|+++++|+++... .|++|+..+-..+..+..|.-.|+.++||||+++|++.+.|+++.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 34568999999999999999999988654 4999999888888889999999999999999999999999999999
Q ss_pred EeCCC------------------------CCccEEEEEcCCCeEEEEecCCC--ceeeEEeccCCceeEEEEEEecCCCe
Q 042146 169 LDAST------------------------PNGKFILVGTLDNTLRLWNYSTR--KILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 169 ~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
|.... |++.++++++.|..|++|..... +.+..+..
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~------------------ 660 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC------------------ 660 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch------------------
Confidence 98644 89999999999999999998876 44443311
Q ss_pred eEEccccceEEEEEcCC----C-CeEEEeeecCCCcEEEEeec
Q 042146 223 YIVSHRDPVISVASHPA----K-NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~----~-~~l~~~~~d~d~~i~iw~~~ 260 (262)
..+..+|+.+++.|- . ..++.|- +.|.|.+|+..
T Consensus 661 --~~~~~aVTAv~~~~~~~~e~~~~vavGl--e~GeI~l~~~~ 699 (764)
T KOG1063|consen 661 --LKFSLAVTAVAYLPVDHNEKGDVVAVGL--EKGEIVLWRRK 699 (764)
T ss_pred --hccCCceeeEEeeccccccccceEEEEe--cccEEEEEecc
Confidence 117889999999773 2 2556665 89999999965
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.5e-21 Score=145.82 Aligned_cols=139 Identities=25% Similarity=0.446 Sum_probs=111.4
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
....|..|..+|+++.|+|+|+.||+|+.+|.|.+|............ .... +-+.....+
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~-------e~~~------------~ke~w~v~k 117 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT-------EADL------------NKEKWVVKK 117 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc-------hhhh------------CccceEEEE
Confidence 556788999999999999999999999999999999765311110000 0000 011233445
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+.+|...|..++|+|++.++++++-|..+++||+..++....+..|...+..++|.|-++++++-+.|...+.+.+.
T Consensus 118 ~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 118 VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 667799999999999999999999999999999999999999999999999999999999999999988866666544
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=153.83 Aligned_cols=218 Identities=22% Similarity=0.353 Sum_probs=163.8
Q ss_pred CCCCceeeeccccc---ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCCcc
Q 042146 2 SSDRSLESFRPYTL---TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~ 74 (262)
++||.|+.|+.... -.++..|...|.+++.. +.+|++|+.+++|.+|.+.+....... .+.....+.+...
T Consensus 32 gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~ 109 (933)
T KOG1274|consen 32 GSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGK 109 (933)
T ss_pred cCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCc
Confidence 46888888874432 34444477888887764 458999999999999988764332111 1111111222221
Q ss_pred cc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--------CCC
Q 042146 75 GI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--------HSD 143 (262)
Q Consensus 75 ~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~ 143 (262)
.+ .....|++.+..+......+++|.++|.++.++|.+++||+.+-||.|++||+.++.+...+.+ ...
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~ 189 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSR 189 (933)
T ss_pred EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccc
Confidence 11 2222799999999999999999999999999999999999999999999999998876665532 134
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
.+..++|+|++..|+..+.|+.|++|+... |+|.|||+++.+|.|.|||..+-..
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--- 266 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--- 266 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---
Confidence 578899999999999999999999999776 8999999999999999999987211
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
|. ....|.+++|.|+.+.+-.-.
T Consensus 267 ---~~--------------------~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 267 ---HE--------------------FKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred ---cc--------------------ccceeEEEecCCCCCeeEEEe
Confidence 11 446788999999887654433
No 149
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=3.6e-21 Score=152.58 Aligned_cols=206 Identities=20% Similarity=0.323 Sum_probs=156.9
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
+..++.+-||...|.|++.+|+++++|+++......- +.|++|+..+...
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh------------------------------AvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH------------------------------AVIRLWNTANWLQ 564 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc------------------------------eEEEEEeccchhh
Confidence 3456677799999999999999999999987543211 2578888888888
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe----eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
.+.+.+|.-.|+.|+|+||+++|++.+.|.++.+|...... .....+.|+.-|.+..|+|++.+|+++|.|++|++
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 88999999999999999999999999999999999875332 12235789999999999999999999999999999
Q ss_pred EeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146 169 LDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 169 ~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
|.... ..+..+++|-+.|.|.+|....-....+...+. ...
T Consensus 645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~----------~~~ 714 (764)
T KOG1063|consen 645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFN----------LDT 714 (764)
T ss_pred EeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeee----------ecc
Confidence 98654 234578999999999999865211111110000 000
Q ss_pred CCeeEEccccceEEEEEcCC--------C--CeEEEeeecCCCcEEEEeec
Q 042146 220 NGKYIVSHRDPVISVASHPA--------K--NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~--------~--~~l~~~~~d~d~~i~iw~~~ 260 (262)
......+|...|+.+.|.|. . ..|++|+ +|..+|+++++
T Consensus 715 ~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g--~D~~vri~nv~ 763 (764)
T KOG1063|consen 715 RLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGG--DDESVRIFNVD 763 (764)
T ss_pred ccccccChHHhhheeEeccccccccccccceeEEeeec--ccceeEEeecc
Confidence 00011127889999999985 2 2468888 89999999875
No 150
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=155.79 Aligned_cols=171 Identities=22% Similarity=0.347 Sum_probs=136.1
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------ 80 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------ 80 (262)
-+++..+.||.+.|..+.||.++ +|+++|.|++||+|++...... ....|...|++++
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL---------~~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL---------KVFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCccee---------eEEecCCeeEEEEecccCCCcEeec
Confidence 35788899999999999998765 7999999999999977643222 2223344443333
Q ss_pred ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--C------CCCeeeE
Q 042146 81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--H------SDPVTAI 148 (262)
Q Consensus 81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~------~~~v~~~ 148 (262)
.|++|++...+.+.-.. -...|++++|.|+|+..+.|+.+|.+++|+.+..+......- | ...|+.+
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred ccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 89999998776655444 348899999999999999999999999999987766544321 1 2279999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecC
Q 042146 149 DFNR-DGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 149 ~~~~-~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
.|.| +...+++.+.|..|+|||.+. .+|++|+++++|..|++|+..
T Consensus 508 Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred EecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 9998 445688889999999999955 799999999999999999973
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=8.9e-21 Score=140.61 Aligned_cols=158 Identities=24% Similarity=0.376 Sum_probs=121.0
Q ss_pred cccccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI------------- 76 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v------------- 76 (262)
...+++.++.+|.+.=..++|||-. ..|++|.--+.|++|...+. .+.... ..+.+|...|
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g-~W~vd~----~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG-SWKVDQ----RPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccC-ceeecC----ccccccccchhhhccCCccCceE
Confidence 4567889999999999999999942 24889988899999977652 111110 1122222222
Q ss_pred ---ccceeEEEEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC---CeeeeeeecCCCCeeeE
Q 042146 77 ---SDLATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT---GKCLKVLPAHSDPVTAI 148 (262)
Q Consensus 77 ---~~~~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~ 148 (262)
.+.++|+|||++.+.. ....+.|.+.|+.|.|+....+|++|+.||+++|||++. ++++..++.|+.+|+++
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi 353 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI 353 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence 3344999999998732 223478999999999999888999999999999999985 57888999999999999
Q ss_pred EEccC-CCEEEEEeCCCeEEEEeCCC
Q 042146 149 DFNRD-GTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 149 ~~~~~-~~~l~~~~~dg~i~~~d~~~ 173 (262)
.|+|. ...|++++.|..|.+||+..
T Consensus 354 eW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 354 EWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EeccccCceEEeccCCCcEEEEEeec
Confidence 99994 45777778888888888764
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=136.61 Aligned_cols=160 Identities=21% Similarity=0.440 Sum_probs=121.4
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-----eeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEE
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-----CLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYR 167 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~ 167 (262)
..+++|...|++++|+.||++|++++.|+.|++|+++... +++.- ..-+-.+.++|+||-+-+ +++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3578999999999999999999999999999999997532 11111 112245889999988754 4455667899
Q ss_pred EEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 168 ILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 168 ~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
+|.+.. .++.++++++.|..|.+|+++ |+.+..+.......+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa-- 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA-- 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee--
Confidence 998654 567899999999999999998 888877754332222111
Q ss_pred EecCCCee-------------------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 216 FSVTNGKY-------------------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 216 ~~~~~~~~-------------------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+ +++++ +.+|...|..++|+|+...++|.| .||+++|||++
T Consensus 236 vS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriwdtd 308 (420)
T KOG2096|consen 236 VS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIWDTD 308 (420)
T ss_pred eC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEeecc
Confidence 11 22222 233999999999999999999999 99999999985
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.3e-21 Score=161.42 Aligned_cols=200 Identities=19% Similarity=0.307 Sum_probs=162.5
Q ss_pred CCCceeeecccc--------cceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146 3 SDRSLESFRPYT--------LTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73 (262)
Q Consensus 3 ~d~~i~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 73 (262)
.||.|..|.+-. .+.+...|+++|+.+.|++... +||+|+.||.|.|||+.+...
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t---------------- 151 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET---------------- 151 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC----------------
Confidence 488899997544 5667789999999999999755 999999999999998865211
Q ss_pred cccccceeEEEEecCCCcccee--cccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCC--CeeeE
Q 042146 74 QGISDLATIRLWDVPTATSLKT--LIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD--PVTAI 148 (262)
Q Consensus 74 ~~v~~~~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~ 148 (262)
... -....+.|.+++|+. ....|++++.+|.+.|||++..+.+-.+..+.. .+..+
T Consensus 152 -------------------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 152 -------------------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred -------------------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 111 122456799999997 456789999999999999999888877766544 47899
Q ss_pred EEccCC-CEEEEEeCCC---eEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 149 DFNRDG-TMIVTSSYDG---LYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 149 ~~~~~~-~~l~~~~~dg---~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
+|+|+. ..+++++.|. .|.+||+|. .|.++|++++.|+.|..|+.++++.+..+
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 999965 4677776554 699999886 56689999999999999999999999999
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
.. ....+..+.|+|... .++.++ -||.|.|+.+..
T Consensus 293 p~----------------------~~nW~fdv~w~pr~P~~~A~as--fdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 293 PA----------------------QGNWCFDVQWCPRNPSVMAAAS--FDGKISIYSLQG 328 (1049)
T ss_pred CC----------------------CCcceeeeeecCCCcchhhhhe--eccceeeeeeec
Confidence 86 667889999999887 777778 789999998753
No 154
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.3e-20 Score=135.36 Aligned_cols=189 Identities=20% Similarity=0.312 Sum_probs=139.0
Q ss_pred cCcCceEEEEEccCCC-----eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 21 GHLRAVSYVKFSHDGR-----LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~-----~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
.|.-+++.+.|.|+.. +|||.+ ..+|+|.+..... ....... +.+ ..
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~----~~~~~~~------------------L~~----~k 145 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEES----RVELQSV------------------LNN----NK 145 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCC----ceehhhh------------------hcc----Cc
Confidence 5889999999999753 566654 4788896643100 0000000 000 01
Q ss_pred cccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEe
Q 042146 96 LIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILD 170 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d 170 (262)
-..+.+++++..|+. +.+++.+.+-|-+..|||++++. ....+-+|..+|..++|...+ +.|++.+.||.+++||
T Consensus 146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 123667999999998 88899999999999999999873 355667899999999999855 4899999999999999
Q ss_pred CCC------------------------CCccEEEEEcCC-CeEEEEecCC-CceeeEEeccCCceeEEEEEEecCCCeeE
Q 042146 171 AST------------------------PNGKFILVGTLD-NTLRLWNYST-RKILKTYSGYTNSKYCISSTFSVTNGKYI 224 (262)
Q Consensus 171 ~~~------------------------~~~~~l~~~~~d-g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
+|. .+.+++++-..| ..|.|.|++. ..++..+++
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-------------------- 285 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-------------------- 285 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--------------------
Confidence 998 234555554433 4677777775 456666666
Q ss_pred EccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeecc
Q 042146 225 VSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 225 ~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|++.|+.++|.|.. ..|+|+| .|..+.+||++.
T Consensus 286 --H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q 319 (364)
T KOG0290|consen 286 --HQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQ 319 (364)
T ss_pred --CcccccceEecCCCCceeeecC--CcceEEEEeccc
Confidence 99999999999974 5788888 899999999864
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=7.5e-20 Score=145.25 Aligned_cols=229 Identities=21% Similarity=0.347 Sum_probs=170.4
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC----Ccccc
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG----HEQGI 76 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~v 76 (262)
++..+..|+ ...+.+++++|...|.|++|+.||+.||+|+.|+.|.+|+-.-...........++.... |...-
T Consensus 31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLAS 110 (1081)
T ss_pred cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhh
Confidence 455566665 467899999999999999999999999999999999999754322222222333332221 11122
Q ss_pred ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccC
Q 042146 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRD 153 (262)
Q Consensus 77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~ 153 (262)
.++...-+|..+.....+ . .....+.+.+|..||++++.|-.+|+|.+-+-. +++.-.+ .+.+++|.+++|+|.
T Consensus 111 CsLsdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 111 CSLSDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred cchhhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCC
Confidence 233356677765433222 1 234678999999999999999999999998743 3332233 246789999999994
Q ss_pred C-----CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 154 G-----TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 154 ~-----~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
. ..+++.....++..|.+.. ++|.|++.|+.|+.+.+|- +.|-.+.++..
T Consensus 188 sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~----- 261 (1081)
T KOG1538|consen 188 SGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE----- 261 (1081)
T ss_pred CCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc-----
Confidence 3 4788899999999998765 8999999999999999996 44666666654
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
.+..|..++..|+++.++.|+ .||+|-.|++
T Consensus 262 -----------------~D~WIWtV~~~PNsQ~v~~GC--qDGTiACyNl 292 (1081)
T KOG1538|consen 262 -----------------QDSWIWTVQAKPNSQYVVVGC--QDGTIACYNL 292 (1081)
T ss_pred -----------------cceeEEEEEEccCCceEEEEE--ccCeeehhhh
Confidence 667899999999999999999 8999988875
No 156
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=146.69 Aligned_cols=177 Identities=20% Similarity=0.368 Sum_probs=154.3
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec---ccC
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL---IGH 99 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~---~~~ 99 (262)
...+++++.++.|++.+.|...|+|-+|+++. |-....+ +.|
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-----------------------------------Gi~r~sf~~~~ah 492 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-----------------------------------GIHRKSFGDSPAH 492 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEccc-----------------------------------CeeecccccCccc
Confidence 47799999999999999999999998887654 3333344 579
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 173 (262)
+.+|+.++...-++.+++++.+|.+++||+.+..++..+. -..++.++.++.....++.+..|-.|+++|+.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 9999999999989999999999999999999888777775 466789999999889999999999999999875
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 239 (262)
|+|++|++++.|++|++||+.++.++..+. -+.+++++.|+|+
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-----------------------vd~~~~sls~SPn 628 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-----------------------VDSPCTSLSFSPN 628 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-----------------------cCCcceeeEECCC
Confidence 899999999999999999999999998886 5678999999999
Q ss_pred CCeEEEeeecCCCcEEEEee
Q 042146 240 KNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 240 ~~~l~~~~~d~d~~i~iw~~ 259 (262)
|.+|||...| ..-|++|.-
T Consensus 629 gD~LAT~Hvd-~~gIylWsN 647 (910)
T KOG1539|consen 629 GDFLATVHVD-QNGIYLWSN 647 (910)
T ss_pred CCEEEEEEec-CceEEEEEc
Confidence 9999999943 367999963
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=2e-19 Score=138.13 Aligned_cols=230 Identities=12% Similarity=0.185 Sum_probs=168.0
Q ss_pred eeeecccccceecccCc--CceEEEEEccCCC-eEEEecCCCeEEEeecCCC----CCCCCCCCCCCccccCCcccc---
Q 042146 7 LESFRPYTLTQTLNGHL--RAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSI----SNFDSTPPSPLQKFTGHEQGI--- 76 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~v--- 76 (262)
|+++......-.+..|+ ..+.++.|+.... ..++.+.|..+++|.-... .......+....+........
T Consensus 16 l~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~ 95 (673)
T KOG4378|consen 16 LSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEI 95 (673)
T ss_pred EeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeee
Confidence 44444555444444443 3388899987664 3344567889999954331 000001111100110000001
Q ss_pred --ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEEccC
Q 042146 77 --SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRD 153 (262)
Q Consensus 77 --~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~ 153 (262)
..-+.|++||++.....+.+++|+..|+++.++-...+||+++..|.|.|..+.++.....+....+ .|.-+.|+|.
T Consensus 96 sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS 175 (673)
T ss_pred ccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence 1112899999997777788999999999999999999999999999999999999988888865434 5668999996
Q ss_pred CC-EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 154 GT-MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 154 ~~-~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
.+ +|.+++.+|.|.+||+.. .+..+|++.+.|..|.+||.+..+....+.
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------- 248 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------- 248 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-------
Confidence 65 678889999999999876 456788899999999999999877777665
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...+...++|.|+|.+|+.|. ..|.|..||+..
T Consensus 249 ----------------y~~Plstvaf~~~G~~L~aG~--s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 249 ----------------YSHPLSTVAFSECGTYLCAGN--SKGELIAYDMRS 281 (673)
T ss_pred ----------------ecCCcceeeecCCceEEEeec--CCceEEEEeccc
Confidence 566889999999999999999 899999999864
No 158
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.5e-20 Score=144.73 Aligned_cols=211 Identities=20% Similarity=0.329 Sum_probs=152.0
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
...+.+.+.||++-|+|++|+.+|.+|++||.|-.+.|||.- ..+
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----------------------------------~~K 83 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----------------------------------EYK 83 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch-----------------------------------hcc
Confidence 345677889999999999999999999999999999888653 233
Q ss_pred cceec-ccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCC----------CeeeeeeecCCCCeeeEEEccCC-CEE
Q 042146 92 SLKTL-IGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKT----------GKCLKVLPAHSDPVTAIDFNRDG-TMI 157 (262)
Q Consensus 92 ~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l 157 (262)
++..+ .+|...|.+++|-| +.+++++|..|..|+++|+.. ......+..|...|..++-.|++ +.+
T Consensus 84 llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 84 LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTF 163 (758)
T ss_pred eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceE
Confidence 33333 47999999999999 667899999999999999974 23445567799999999999987 789
Q ss_pred EEEeCCCeEEEEeCCC-------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146 158 VTSSYDGLYRILDAST-------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 206 (262)
.+++.||+|+-+|+|. .+..+|++|+.|-..++||.+.. +..+....
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~ 241 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDG 241 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCc
Confidence 9999999999999997 35679999999999999996421 11111110
Q ss_pred -----CceeEEEEEEecCCCe-eEEc----cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 207 -----NSKYCISSTFSVTNGK-YIVS----HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 207 -----~~~~~~~~~~~~~~~~-~~~~----~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++..+..+.+..+... ...+ -...++-++|+|+|.-|...- ..-.|++++++.
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~--~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW--GGEHVYLFDVNE 304 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEee--CCeEEEEEeecC
Confidence 1111111111111110 0000 112267788999998666553 355899999875
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=3.4e-20 Score=145.96 Aligned_cols=196 Identities=18% Similarity=0.289 Sum_probs=149.1
Q ss_pred cCcCceEE--EEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 21 GHLRAVSY--VKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 21 ~h~~~v~~--~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
.|.-++.- ..|++ ....|+.+.+||.|.++|...... .+ ....+..
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f----------------------------r~-ee~~lk~ 95 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVF----------------------------RL-EERQLKK 95 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhc----------------------------ch-hhhhhcc
Confidence 34444443 56655 345799999999999998754211 11 2233456
Q ss_pred cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee--eecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCC
Q 042146 96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~ 172 (262)
...|...|..+.|.|....|++++.|.++++||+++++++.. +.+|...|.+++|+| +...|++|+.||.|.|||++
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 678999999999999777899999999999999999888766 889999999999999 56789999999999999988
Q ss_pred C--------------------------------------------------CCccEEEEEcC-CCeEEEEecCCCceeeE
Q 042146 173 T--------------------------------------------------PNGKFILVGTL-DNTLRLWNYSTRKILKT 201 (262)
Q Consensus 173 ~--------------------------------------------------~~~~~l~~~~~-dg~i~i~d~~~~~~~~~ 201 (262)
. .|...|++++. |+.|+|||++.......
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 6 47788888887 99999999997654433
Q ss_pred EeccCCceeEEEEEEecCCCeeEEcc---ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSH---RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
........+. .| .-.+.++.....|.+|.+.+ .|+.|++|++..
T Consensus 256 ~ep~~~~~~~--------------t~skrs~G~~nL~lDssGt~L~AsC--tD~sIy~ynm~s 302 (720)
T KOG0321|consen 256 QEPRGSDKYP--------------THSKRSVGQVNLILDSSGTYLFASC--TDNSIYFYNMRS 302 (720)
T ss_pred cCCCcccCcc--------------CcccceeeeEEEEecCCCCeEEEEe--cCCcEEEEeccc
Confidence 3221110000 02 33577888888899998888 789999999864
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.6e-19 Score=123.02 Aligned_cols=209 Identities=18% Similarity=0.235 Sum_probs=151.9
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC--CCCccccCCccccccce------------eEEEEecCC
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP--SPLQKFTGHEQGISDLA------------TIRLWDVPT 89 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~------------~i~v~d~~~ 89 (262)
..|.+-+++|.+++|++|+.+|+|.+..+......+..++ ..+....+|..+++.+. .|+-|..+.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 3466778999999999999999999999987544333322 23344467777776655 666665543
Q ss_pred Ccc------ceec--ccC-----CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146 90 ATS------LKTL--IGH-----TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 90 ~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
... +... +-| -..|++|...|..+-++.++.|+.++-||+++|+..+++++|++.|.+++--.....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 221 1111 112 246899999997776766668999999999999999999999999999998666678
Q ss_pred EEEEeCCCeEEEEeCCC----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146 157 IVTSSYDGLYRILDAST----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 208 (262)
+++|+.||++++||+++ .+..++++|+ ...+.+|+++..++...++
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp----- 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP----- 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-----
Confidence 99999999999999987 3455666665 3568999999998888887
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
-..++..+.|. .+.+++++ +.+.|.-|.++
T Consensus 245 ------------------ipa~v~~v~F~--~d~vl~~G--~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 ------------------IPARVHLVDFV--DDCVLIGG--EGNHVQSYTLN 274 (325)
T ss_pred ------------------cccceeEeeee--cceEEEec--cccceeeeeec
Confidence 44566666665 33455555 45566666554
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=1.5e-21 Score=157.92 Aligned_cols=210 Identities=27% Similarity=0.398 Sum_probs=160.2
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA 90 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~ 90 (262)
+..+.++.+.+|..+|.|..|...|.++++|+.|..++||. .+++
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS-----------------------------------~et~ 222 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWS-----------------------------------META 222 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeee-----------------------------------ccch
Confidence 44566777889999999999999999999999999988884 4577
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
.++....+|.+.|+.++.+.+..++++++.|..|++|-+..+.++..+.+|++.|++++|+|-. +.+.||++++||
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd 298 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWD 298 (1113)
T ss_pred hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecc
Confidence 8889999999999999999888899999999999999999999999999999999999999954 778999999999
Q ss_pred CCC------------------------CCccEEEEEcCCCeEEEEecCCCc-----ee-eEEeccCC------ceeEEEE
Q 042146 171 AST------------------------PNGKFILVGTLDNTLRLWNYSTRK-----IL-KTYSGYTN------SKYCISS 214 (262)
Q Consensus 171 ~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~-----~~-~~~~~~~~------~~~~~~~ 214 (262)
.+- .++.-+++++.|+.-..|.+.... ++ .+..+... ...+...
T Consensus 299 ~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 299 ARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred ccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEee
Confidence 882 344566777777776666554211 11 01111000 1111122
Q ss_pred EEecCCC---eeEEccccceEEEEEcCCCCeEE-EeeecCCCcEEEEeecc
Q 042146 215 TFSVTNG---KYIVSHRDPVISVASHPAKNIIA-SGALDNDRTMKIWTQEK 261 (262)
Q Consensus 215 ~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~d~~i~iw~~~~ 261 (262)
.+....+ ....+|...+..+.+||-...++ +++ .||...|||+-+
T Consensus 379 vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag--~dgst~iwdi~e 427 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG--YDGSTIIWDIWE 427 (1113)
T ss_pred eeecccchhhhhhcccccceeeeeecCCCcHhhhhcc--CCCceEeeeccc
Confidence 2222222 23344889999999999777665 666 899999999853
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-20 Score=157.30 Aligned_cols=207 Identities=23% Similarity=0.381 Sum_probs=155.3
Q ss_pred CCCCCceeeecc--------cccceecccCcCceEEEEEccCCCe----EEEecCCCeEEEeecCCCCCCCCCCCCCCcc
Q 042146 1 MSSDRSLESFRP--------YTLTQTLNGHLRAVSYVKFSHDGRL----LTSSSAEKTLLTYSLSSISNFDSTPPSPLQK 68 (262)
Q Consensus 1 ~s~d~~i~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 68 (262)
||.+.+++.|.. .+++..+. -...-+.++|.+.+.. ||.|.+||.|.+||.....
T Consensus 35 fst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------------ 101 (1049)
T KOG0307|consen 35 FSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------------ 101 (1049)
T ss_pred cccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhc------------
Confidence 455667776641 12333332 3456789999997765 8889999999999875420
Q ss_pred ccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee--ecCCCCe
Q 042146 69 FTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL--PAHSDPV 145 (262)
Q Consensus 69 ~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v 145 (262)
.-.....+.+...|.+.|..+.|++ .+++|++|+.||.|.|||+..-+.-... ....+.|
T Consensus 102 -----------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI 164 (1049)
T KOG0307|consen 102 -----------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI 164 (1049)
T ss_pred -----------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence 0012345667788999999999999 5559999999999999999875433333 1245689
Q ss_pred eeEEEcc-CCCEEEEEeCCCeEEEEeCCC----------------------C-CccEEEEEcCCC---eEEEEecCCC-c
Q 042146 146 TAIDFNR-DGTMIVTSSYDGLYRILDAST----------------------P-NGKFILVGTLDN---TLRLWNYSTR-K 197 (262)
Q Consensus 146 ~~~~~~~-~~~~l~~~~~dg~i~~~d~~~----------------------~-~~~~l~~~~~dg---~i~i~d~~~~-~ 197 (262)
.+++|.. ....|++++.+|++.+||+|. | +...+++++.|. .|.+||+|.- .
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 9999987 456789999999999999997 2 334566666553 7999999863 4
Q ss_pred eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeecc
Q 042146 198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+++++.+ |...|.++.|++.+ .+|++++ .|+.|.+|+.+.
T Consensus 245 P~k~~~~----------------------H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~t 285 (1049)
T KOG0307|consen 245 PLKILEG----------------------HQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNT 285 (1049)
T ss_pred chhhhcc----------------------cccceeeeccCCCCchhhhccc--CCCCeeEecCCC
Confidence 6666665 99999999999977 7888998 899999999874
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.7e-19 Score=137.38 Aligned_cols=179 Identities=19% Similarity=0.326 Sum_probs=141.6
Q ss_pred Cceeee--cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146 5 RSLESF--RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI 82 (262)
Q Consensus 5 ~~i~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i 82 (262)
+.+++| +.-...+.+++|+..|+++.++-...|||+++..|-|.|..+.
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~----------------------------- 151 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK----------------------------- 151 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-----------------------------
Confidence 445555 4444667789999999999999999999999999998888553
Q ss_pred EEEecCCCccceecccC-CcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeee-ecCCCCeeeEEEcc-CCCEEE
Q 042146 83 RLWDVPTATSLKTLIGH-TNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVL-PAHSDPVTAIDFNR-DGTMIV 158 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~ 158 (262)
++....++... ...|.-+.++|..+. |.+++.+|.|.+||+....++..+ ..|..+...++|+| +..+|+
T Consensus 152 ------t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 152 ------TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ------cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 33333344322 344568899996654 668899999999999877766554 67999999999999 566899
Q ss_pred EEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEec
Q 042146 159 TSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
+.+.|..|.+||.++ ++|.+|++|+..|.|..||++.. .++..+..
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-------------- 291 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-------------- 291 (673)
T ss_pred EecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee--------------
Confidence 999999999999987 79999999999999999999964 56777766
Q ss_pred CCCeeEEccccceEEEEEcCCC
Q 042146 219 TNGKYIVSHRDPVISVASHPAK 240 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~ 240 (262)
|...|++++|-|..
T Consensus 292 --------h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 --------HDASVTRVAFQPSP 305 (673)
T ss_pred --------cccceeEEEeeecc
Confidence 66667777776654
No 164
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2e-19 Score=135.22 Aligned_cols=175 Identities=22% Similarity=0.365 Sum_probs=140.8
Q ss_pred EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEE
Q 042146 27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCI 106 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~ 106 (262)
.+++|+++|..|++|+.||++|+|+. .+...+.....|...|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~-----------------------------------Ps~~t~l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEW-----------------------------------PSMLTILEEIAHHAEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEec-----------------------------------CcchhhhhhHhhcCccccc
Confidence 78999999999999999999998853 3445556667789999999
Q ss_pred EEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--CCCCeeeEEEccCC---CE--EEEEeCCCeEEEEeCCC------
Q 042146 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNRDG---TM--IVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 107 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~---~~--l~~~~~dg~i~~~d~~~------ 173 (262)
.|+||+++|++.+.| ..+||+.+++.++..... .......+.|+.++ .+ ++....-+.|+.||+..
T Consensus 193 ~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~ 271 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF 271 (398)
T ss_pred eeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc
Confidence 999999999999999 999999999977666542 23456778888876 33 33333455666655432
Q ss_pred -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 234 (262)
.+|++++.|+.||.|-|++..+.+.++.++.. |..-|+.+
T Consensus 272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a---------------------H~~~VT~l 330 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA---------------------HLGFVTGL 330 (398)
T ss_pred cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh---------------------heeeeeeE
Confidence 79999999999999999999988877776542 88999999
Q ss_pred EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 235 ASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 235 ~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.|+|+.+++++.+ .|..+.|..+.
T Consensus 331 tF~Pdsr~~~svS--s~~~~~v~~l~ 354 (398)
T KOG0771|consen 331 TFSPDSRYLASVS--SDNEAAVTKLA 354 (398)
T ss_pred EEcCCcCcccccc--cCCceeEEEEe
Confidence 9999999999988 77888887664
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=4.3e-19 Score=147.21 Aligned_cols=236 Identities=18% Similarity=0.305 Sum_probs=166.1
Q ss_pred eeeecccccceecccC---cCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCC--CCCC------CC--------CCC
Q 042146 7 LESFRPYTLTQTLNGH---LRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSIS--NFDS------TP--------PSP 65 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h---~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~--~~~~------~~--------~~~ 65 (262)
++.|+..+....|..+ ...|+.+.+-. |..++++|+.||.|+||+-.... .... .. ...
T Consensus 1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence 4555556665555543 45688888854 45689999999999999743321 0000 00 001
Q ss_pred CccccCCcccc---ccceeEEEEecCCCccceeccc-CCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC---eeeee
Q 042146 66 LQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIG-HTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG---KCLKV 137 (262)
Q Consensus 66 ~~~~~~~~~~v---~~~~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~ 137 (262)
+..+....+.. .....|+|||.+....+..+.. ....|+++.-+. .|+.+++|..||.|++||.+.. ..+..
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 11111111111 1133899999998877776653 334577776554 5799999999999999998754 34666
Q ss_pred eecCCCC--eeeEEEccCCC-EEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEE
Q 042146 138 LPAHSDP--VTAIDFNRDGT-MIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLR 189 (262)
Q Consensus 138 ~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~ 189 (262)
.+.|+.. |..+.+.+.|- .|++|+.||.|++||+|. +..+.+++|+. +.|.
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 7788876 99999999765 599999999999999997 34567888887 9999
Q ss_pred EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
||++. |+.+..++.+ ..++....+.+.|++|||...++|+|+ .|..|.||..++
T Consensus 1329 Iy~~~-G~~l~~~k~n---------------~~F~~q~~gs~scL~FHP~~~llAaG~--~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYN---------------PGFMGQRIGSVSCLAFHPHRLLLAAGS--ADSTVSIYSCEK 1382 (1387)
T ss_pred EEecC-hhhhcccccC---------------cccccCcCCCcceeeecchhHhhhhcc--CCceEEEeecCC
Confidence 99986 6666666532 112222556789999999999999998 899999998765
No 166
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.4e-18 Score=136.41 Aligned_cols=166 Identities=15% Similarity=0.204 Sum_probs=115.0
Q ss_pred CCCceeeeccc----ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC-------CCCC-CCCccc-
Q 042146 3 SDRSLESFRPY----TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD-------STPP-SPLQKF- 69 (262)
Q Consensus 3 ~d~~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-------~~~~-~~~~~~- 69 (262)
.||.+..+.-. +....|...++.|.+++|+|++..+++|+.||.|++||........ .... .+...+
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 46666666522 2334455567899999999999999999999999999987654322 1111 111111
Q ss_pred -cC-Cc---cccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee----eeeec
Q 042146 70 -TG-HE---QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL----KVLPA 140 (262)
Q Consensus 70 -~~-~~---~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~ 140 (262)
.. .. ....+.+.|++||...+..++.+..|.+.|.+++..++++++++++.|+.|..|...+++.. .....
T Consensus 210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 210 VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred EEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 11 11 11223348999999999999999999999999999999999999999999999987665331 12234
Q ss_pred CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
|...|.+++..++ .+++|+.|.++.+-.
T Consensus 290 h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred Ccccceeeeeecc--eEEecceeeEEEEcc
Confidence 5666666666654 566666666655544
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=133.48 Aligned_cols=127 Identities=17% Similarity=0.272 Sum_probs=106.0
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++..-. ..+.+++...
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-----------------------------~k~~KPI~~~ 100 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-----------------------------RKTPKPIGVM 100 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-----------------------------hcCCCCceec
Confidence 34568999999999999999999999999999998764110 1123444433
Q ss_pred c-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC---CCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 97 I-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS---DPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 97 ~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
. .|...|.|++|+...+++++|..+++|...|+++.+.+..+. |. +.|..+..+|..+.|++.+.++.|.+||.+
T Consensus 101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 3 355899999999999999999999999999999998888774 44 489999999999999999999999999988
Q ss_pred C
Q 042146 173 T 173 (262)
Q Consensus 173 ~ 173 (262)
.
T Consensus 180 d 180 (609)
T KOG4227|consen 180 D 180 (609)
T ss_pred C
Confidence 6
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=5.7e-19 Score=127.01 Aligned_cols=223 Identities=21% Similarity=0.291 Sum_probs=149.9
Q ss_pred cccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-CCC----CCCCCcc-----ccC-C---ccccc
Q 042146 13 YTLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-DST----PPSPLQK-----FTG-H---EQGIS 77 (262)
Q Consensus 13 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~----~~~~~~~-----~~~-~---~~~v~ 77 (262)
...+..+. .+-+.|.|+.|.|++..+|+-. |..|.+|++++.... ... ....... +.. | .....
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 44455554 5667899999999999999877 899999999876542 111 1111111 112 2 12234
Q ss_pred cceeEEEEecCCCccceec-ccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEcc-C
Q 042146 78 DLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNR-D 153 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~ 153 (262)
...++..||+++..+...+ ..|...|..+.|+|+.+ +|++++.||.|++||.+. ..++.++.+|...|.++.|+| .
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 4459999999987766554 46889999999999765 578999999999999985 457889999999999999999 4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC-ccEEEEEcCCCeEEEEecCC------CceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 154 GTMIVTSSYDGLYRILDASTPN-GKFILVGTLDNTLRLWNYST------RKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~~~-~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
..++++++.|..|.+|...+.. ...+..+.....-..=|.+. ...+.++..
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde---------------------- 328 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE---------------------- 328 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc----------------------
Confidence 5678899999999888766521 11111111110000000000 011122222
Q ss_pred cccceEEEEEcCCCCe-EEEeeecCCCcEEEEeec
Q 042146 227 HRDPVISVASHPAKNI-IASGALDNDRTMKIWTQE 260 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~-l~~~~~d~d~~i~iw~~~ 260 (262)
|++.|.+++|+.-.+. +|+-+ .||.+.|=++.
T Consensus 329 hEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred cccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 9999999999987765 55667 89999876654
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.6e-19 Score=142.68 Aligned_cols=124 Identities=21% Similarity=0.381 Sum_probs=107.2
Q ss_pred CcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 22 HLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 22 h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
....|+.+.|.| |...||+++.||.|++|.+......+ ....+...+..|.
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------------------------~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------------------------NEMTPEKILTIHG 677 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc----------------------------ccCCcceeeeccc
Confidence 346699999999 67789999999999999876422110 1234555677899
Q ss_pred cceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 101 NYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
..|+++.|+| -.+.|++++.|-+|++||+++++....+.+|.+.|..++|+|+|+.+++.+.||+|++|..++
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 9999999999 677899999999999999999999899999999999999999999999999999999999887
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=124.66 Aligned_cols=194 Identities=18% Similarity=0.317 Sum_probs=139.3
Q ss_pred cceecccCcCceEEEEEccCC-CeEEEecCC-------CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEe
Q 042146 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAE-------KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWD 86 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d 86 (262)
....|..|.+.|..++-+|-. +.|+|+-.+ -.+.||.+....... +
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--------------------------~ 108 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--------------------------N 108 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--------------------------c
Confidence 445667788999999999954 455555432 135566554311100 0
Q ss_pred cCCCccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee-eeeee-----cCCCCeeeEEEcc--CCCEE
Q 042146 87 VPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVLP-----AHSDPVTAIDFNR--DGTMI 157 (262)
Q Consensus 87 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l 157 (262)
..+.+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 01233344444 3456899999999999998876 88999999987655 33332 2455788899999 66666
Q ss_pred EEEeCCCeEEEEeCCC---------------------CC-ccEEEEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEE
Q 042146 158 VTSSYDGLYRILDAST---------------------PN-GKFILVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISS 214 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~---------------------~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 214 (262)
++. .|+++..||+|+ |+ ..+|++|+.||.|+|||.+. ..++.++.+
T Consensus 188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---------- 256 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---------- 256 (370)
T ss_pred EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC----------
Confidence 654 589999999998 33 45788999999999999986 457777777
Q ss_pred EEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146 215 TFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...|.++.|+|. .+++.++| .|..|.+|...
T Consensus 257 ------------HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~ 289 (370)
T KOG1007|consen 257 ------------HSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCAS 289 (370)
T ss_pred ------------CceEEEEEEecCccceEEEecC--CCceeEEEecc
Confidence 8889999999996 45677888 89999998753
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.9e-19 Score=135.63 Aligned_cols=152 Identities=20% Similarity=0.385 Sum_probs=120.6
Q ss_pred ecCCCccceecccCCcceEEEEEeCCC--CEEEeecCCCeEEEEECCCC----eeeeeeecCCCCeeeEEEcc-CCCEEE
Q 042146 86 DVPTATSLKTLIGHTNYVFCINFNPQS--NRIVSDTFNETIRIWDIKTG----KCLKVLPAHSDPVTAIDFNR-DGTMIV 158 (262)
Q Consensus 86 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~ 158 (262)
|+..-......+-+...|++++|+|.. +++++|...|.|-+||+.+. .-+..+..|..+|.+|.|+| +..+++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333334444556688999999999944 57899999999999999633 23566778999999999999 567899
Q ss_pred EEeCCCeEEEEeCCC-----------------------------------------------------------------
Q 042146 159 TSSYDGLYRILDAST----------------------------------------------------------------- 173 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~----------------------------------------------------------------- 173 (262)
+.+.||+|++-|+..
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999776
Q ss_pred -CCccEEEEEcCCCeEEEEecCCCceeeE--EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146 174 -PNGKFILVGTLDNTLRLWNYSTRKILKT--YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN 250 (262)
Q Consensus 174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 250 (262)
....+|++++.|++.+|||++....-.. +.. ..|...|.+..|||.+..|+|.+ .
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst--------------------~~HrrsV~sAyFSPs~gtl~TT~--~ 389 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLST--------------------LPHRRSVNSAYFSPSGGTLLTTC--Q 389 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceec--------------------ccccceeeeeEEcCCCCceEeec--c
Confidence 2456789999999999999886432221 111 11999999999999988899999 8
Q ss_pred CCcEEEEee
Q 042146 251 DRTMKIWTQ 259 (262)
Q Consensus 251 d~~i~iw~~ 259 (262)
|..|+|||.
T Consensus 390 D~~IRv~ds 398 (498)
T KOG4328|consen 390 DNEIRVFDS 398 (498)
T ss_pred CCceEEeec
Confidence 999999997
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=6.1e-18 Score=125.40 Aligned_cols=193 Identities=18% Similarity=0.284 Sum_probs=139.2
Q ss_pred CceEEEEEccCCCeEEEecCC--CeEEEeecCCCCCC-CCCCCCCC--ccccCCccccccceeEEEEecCCCccceecc-
Q 042146 24 RAVSYVKFSHDGRLLTSSSAE--KTLLTYSLSSISNF-DSTPPSPL--QKFTGHEQGISDLATIRLWDVPTATSLKTLI- 97 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~-~~~~~~~~--~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~- 97 (262)
..|--+-|+.. ++|..+.+ +.+++.++...... +..-+.++ ..+....--|.-...|+|+|+.+.+.+.++.
T Consensus 47 ~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 47 VSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIET 124 (391)
T ss_pred eEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhc
Confidence 33555556544 44444433 45888876542211 01111111 1222222223333379999999998888764
Q ss_pred --cCCcceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 98 --GHTNYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 98 --~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
.+...+.++.+++.+.+++- ....|.|.+||+.+-+++..+.+|++++.+++|+++|.+||+++..|+|
T Consensus 125 ~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV------- 197 (391)
T KOG2110|consen 125 TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV------- 197 (391)
T ss_pred cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE-------
Confidence 34556777777777778874 3346899999999999999999999999999999999999999988876
Q ss_pred CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT 253 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~ 253 (262)
|||+.+.+|+.+.+|+... -...|.+++|+|++++|++.| +.++
T Consensus 198 --------------IRVf~v~~G~kl~eFRRG~--------------------~~~~IySL~Fs~ds~~L~~sS--~TeT 241 (391)
T KOG2110|consen 198 --------------IRVFSVPEGQKLYEFRRGT--------------------YPVSIYSLSFSPDSQFLAASS--NTET 241 (391)
T ss_pred --------------EEEEEcCCccEeeeeeCCc--------------------eeeEEEEEEECCCCCeEEEec--CCCe
Confidence 8999999999999987532 234688999999999999999 8999
Q ss_pred EEEEeecc
Q 042146 254 MKIWTQEK 261 (262)
Q Consensus 254 i~iw~~~~ 261 (262)
|++|++++
T Consensus 242 VHiFKL~~ 249 (391)
T KOG2110|consen 242 VHIFKLEK 249 (391)
T ss_pred EEEEEecc
Confidence 99999874
No 173
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=2.9e-17 Score=126.94 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=122.6
Q ss_pred CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEE
Q 042146 36 RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115 (262)
Q Consensus 36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 115 (262)
+.+++++.|+.|++||+. +++.+..+..+. .+.+++|+|+++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~-----------------------------------t~~~~~~~~~~~-~~~~l~~~~dg~~l 45 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-----------------------------------TLEVTRTFPVGQ-RPRGITLSKDGKLL 45 (300)
T ss_pred cEEEEecCCCEEEEEECC-----------------------------------CCceEEEEECCC-CCCceEECCCCCEE
Confidence 568899999988888653 444445554433 35679999999876
Q ss_pred -EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCCC-------------------C
Q 042146 116 -VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAST-------------------P 174 (262)
Q Consensus 116 -~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~-------------------~ 174 (262)
++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++ +.++.+++||+.. |
T Consensus 46 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 46 YVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP 124 (300)
T ss_pred EEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC
Confidence 5677889999999999888777655443 5778999999877655 5689999999875 6
Q ss_pred CccEEEEEcCCC-eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc
Q 042146 175 NGKFILVGTLDN-TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT 253 (262)
Q Consensus 175 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~ 253 (262)
++++++++..++ .+.+||.++++...... ....+..++|+|+++.|+.++. .++.
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~~-~~~~ 180 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-----------------------VDQRPRFAEFTADGKELWVSSE-IGGT 180 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----------------------cCCCccEEEECCCCCEEEEEcC-CCCE
Confidence 788888887765 46678988776655443 2234567999999998865541 5899
Q ss_pred EEEEeecc
Q 042146 254 MKIWTQEK 261 (262)
Q Consensus 254 i~iw~~~~ 261 (262)
|++||+++
T Consensus 181 v~i~d~~~ 188 (300)
T TIGR03866 181 VSVIDVAT 188 (300)
T ss_pred EEEEEcCc
Confidence 99999864
No 174
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5.9e-18 Score=122.72 Aligned_cols=161 Identities=19% Similarity=0.393 Sum_probs=120.0
Q ss_pred ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC----eeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEe
Q 042146 97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG----KCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d 170 (262)
.+|++-|.++.|++.|+.+++++.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+++|+.|+++.+|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 368899999999999999999999999999997543 45667789999999999976 688999999999999998
Q ss_pred CCC-------------------------------CCccEEEEEcCCCeEEEEecCCC------ceeeEEe-------ccC
Q 042146 171 AST-------------------------------PNGKFILVGTLDNTLRLWNYSTR------KILKTYS-------GYT 206 (262)
Q Consensus 171 ~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-------~~~ 206 (262)
-.. .-|-.|++++.||.+|||+.... .+..+++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 522 34667999999999999986532 2222222 122
Q ss_pred CceeEEEEEEecCCCee--------------------------------EEccccceEEEEEcCC----CCeEEEeeecC
Q 042146 207 NSKYCISSTFSVTNGKY--------------------------------IVSHRDPVISVASHPA----KNIIASGALDN 250 (262)
Q Consensus 207 ~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~~~~~p~----~~~l~~~~~d~ 250 (262)
..-.|+....+.....+ +.+|..+|++++|.|+ -.+||+++ .
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--k 247 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--K 247 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--c
Confidence 22223332211111111 1128899999999996 34799999 8
Q ss_pred CCcEEEEeec
Q 042146 251 DRTMKIWTQE 260 (262)
Q Consensus 251 d~~i~iw~~~ 260 (262)
|| |+||++.
T Consensus 248 Dg-v~I~~v~ 256 (361)
T KOG2445|consen 248 DG-VRIFKVK 256 (361)
T ss_pred Cc-EEEEEEe
Confidence 89 9999987
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=126.92 Aligned_cols=170 Identities=18% Similarity=0.359 Sum_probs=128.4
Q ss_pred CCCceeeec----ccccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCC-----CCcccc-C
Q 042146 3 SDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPS-----PLQKFT-G 71 (262)
Q Consensus 3 ~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~~~-~ 71 (262)
.|+++++|+ ....++.+.--..||.+..|.|+|. .+++++.....+.||++..+......+. ....|. .
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS 312 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS 312 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec
Confidence 488888885 3346677766788999999999999 9999999999999999875443222211 111111 1
Q ss_pred Cccccccc----eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-Cee
Q 042146 72 HEQGISDL----ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVT 146 (262)
Q Consensus 72 ~~~~v~~~----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~ 146 (262)
|......+ +.|.+....+++.+.+++ -.+.|..++|+.+++.|++.+.+|.|.+||++...+++.+....+ .-+
T Consensus 313 hd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 313 HDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 22221111 167888888888887776 467899999999999999999999999999999999988864221 346
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 147 AIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+++.++++.+|++|+..|.|.|||..+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccch
Confidence 777889999999999999999999665
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=128.49 Aligned_cols=220 Identities=36% Similarity=0.658 Sum_probs=171.5
Q ss_pred ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCC-CCCCCCC---CCCccccC-C-ccc--c---cc-ceeEEEE
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS-NFDSTPP---SPLQKFTG-H-EQG--I---SD-LATIRLW 85 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~---~~~~~~~~-~-~~~--v---~~-~~~i~v~ 85 (262)
.+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....... .....+.. . ... + .. ...+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999987653 1111111 11111111 1 111 1 11 3389999
Q ss_pred ecCC-CccceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EEEEEeC
Q 042146 86 DVPT-ATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MIVTSSY 162 (262)
Q Consensus 86 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 162 (262)
+... ......+..|...|..++|+|++..+++++. ++.+++|++..+..+..+..|...+.+++|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9987 7777888899999999999999998888886 99999999998888888888999999999999998 5555599
Q ss_pred CCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCC
Q 042146 163 DGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNG 221 (262)
Q Consensus 163 dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
|+.+++||... +++.++++++.|+.+++|+.+.... ...+..
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------------- 282 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG----------------- 282 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec-----------------
Confidence 99999997653 3346778899999999999986655 333322
Q ss_pred eeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 222 KYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 222 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...+.++.|+|++..+++++ .|+.+++|+...
T Consensus 283 -----~~~~v~~~~~~~~~~~~~~~~--~d~~~~~~~~~~ 315 (466)
T COG2319 283 -----HSSSVLSVAFSPDGKLLASGS--SDGTVRLWDLET 315 (466)
T ss_pred -----CCccEEEEEECCCCCEEEEee--CCCcEEEEEcCC
Confidence 788999999999988888887 678899997753
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=2.1e-17 Score=120.46 Aligned_cols=202 Identities=19% Similarity=0.259 Sum_probs=153.0
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
..+..-.++|+|.+|++|+..+|.+-....|.||...+. .-.+..+++
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~--------------------------------~~w~~~htl 51 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA--------------------------------DLWEPAHTL 51 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCC--------------------------------CCceeceeh
Confidence 344445689999999999999999999989888855331 114677888
Q ss_pred ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+.|...|+.+.|+|..+.|++++.|..-++|....+ ++...+..++...+++.|+|.++.|++|+....|.+|-...
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 999999999999999999999999999999998433 45555667899999999999999999999999999998765
Q ss_pred ------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE---c
Q 042146 174 ------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV---S 226 (262)
Q Consensus 174 ------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 226 (262)
|++-+|++|+.|+..+++..-- +.+.+-+. ...+.-...| +.++. .
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI-K~Vdekpa--p~pWgsk~PF----G~lm~E~~~ 204 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI-KGVDEKPA--PTPWGSKMPF----GQLMSEASS 204 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee-eccccCCC--CCCCccCCcH----HHHHHhhcc
Confidence 7888999999999999986421 11111110 1111111000 00000 1
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
..+.|..+.|+|+|..|+-.+ .|+.+.+=|.
T Consensus 205 ~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da 235 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDA 235 (361)
T ss_pred CCCceeeeEeCCCCCEeeEec--CCCceEEeec
Confidence 567899999999999999999 8898887654
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.5e-17 Score=131.90 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=99.8
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
..|...++|.++||+++++|+|..||+|.+|.--... ........+.-|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------------------------------~~~~t~t~lHWH 250 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------------------------------DDSETCTLLHWH 250 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccc-------------------------------cccccceEEEec
Confidence 3578889999999999999999999999999422100 011223345568
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
..+|++++|+++|.+|++|+..|.+.+|.+.+++ ..-++.-.++|..+.++||+.+.+....|..|.+..+.+
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 8999999999999999999999999999999988 444556678999999999999999999999988887643
No 179
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=1.8e-16 Score=113.66 Aligned_cols=116 Identities=21% Similarity=0.498 Sum_probs=91.9
Q ss_pred CcceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCcc
Q 042146 100 TNYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGK 177 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 177 (262)
.++|.+++|+|+++.+++ |..++.|.+||++ ++.+..+. ...+..+.|+|+|++|++++.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~-------------- 121 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFG-------------- 121 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEcc--------------
Confidence 457999999999998754 4466799999997 66666663 5678899999999999888743
Q ss_pred EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec----CCCc
Q 042146 178 FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD----NDRT 253 (262)
Q Consensus 178 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~d~~ 253 (262)
...|.|.+||.++.+.+.... |. .++.++|+|+|++|+++... .|+.
T Consensus 122 -----n~~G~l~~wd~~~~~~i~~~~-----------------------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 122 -----NLNGDLEFWDVRKKKKISTFE-----------------------HS-DATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred -----CCCcEEEEEECCCCEEeeccc-----------------------cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence 345789999999888877764 33 46899999999999999731 2788
Q ss_pred EEEEeecc
Q 042146 254 MKIWTQEK 261 (262)
Q Consensus 254 i~iw~~~~ 261 (262)
++||++..
T Consensus 173 ~~Iw~~~G 180 (194)
T PF08662_consen 173 FKIWSFQG 180 (194)
T ss_pred EEEEEecC
Confidence 99999864
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.1e-18 Score=131.18 Aligned_cols=224 Identities=20% Similarity=0.298 Sum_probs=150.1
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-CCCCCccccC-------Cccccc--ccee
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-PPSPLQKFTG-------HEQGIS--DLAT 81 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~-------~~~~v~--~~~~ 81 (262)
.+.+...|..|.+.|+.+.|+..|..|++||.|.+|.+||-......... .+.....++. ....+. ..+.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 45677788999999999999999999999999999999986554322111 1111111111 111111 1113
Q ss_pred EEEEecCC-Cc--cceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeee---ecCCC---CeeeEEEc
Q 042146 82 IRLWDVPT-AT--SLKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSD---PVTAIDFN 151 (262)
Q Consensus 82 i~v~d~~~-~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~---~v~~~~~~ 151 (262)
+++=.+.. +. ....+..|.++|.-++.-|+ ..-|.+++.|+.+.-.|++.+.+...+ ..+.. ....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 44433322 22 23456679999999999995 456889999999999999876432222 11222 34555555
Q ss_pred cC-CCEEEEEeCCCeEEEEeCCC---------------------------------------------------------
Q 042146 152 RD-GTMIVTSSYDGLYRILDAST--------------------------------------------------------- 173 (262)
Q Consensus 152 ~~-~~~l~~~~~dg~i~~~d~~~--------------------------------------------------------- 173 (262)
|. ...+++++.|..+++||.+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 52 33556666666666666544
Q ss_pred ---------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146 174 ---------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN 220 (262)
Q Consensus 174 ---------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (262)
|...|+++|+.-|.|.||+-.+++.+..+.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg---------------- 434 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG---------------- 434 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc----------------
Confidence 5567777777777777777777777776665
Q ss_pred CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
...-|+|+.=||.-.+||++| =|..|+||..
T Consensus 435 ------Dr~VVNCLEpHP~~PvLAsSG--id~DVKIWTP 465 (559)
T KOG1334|consen 435 ------DRHVVNCLEPHPHLPVLASSG--IDHDVKIWTP 465 (559)
T ss_pred ------ccceEeccCCCCCCchhhccC--CccceeeecC
Confidence 334799999999999999999 7899999987
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=129.04 Aligned_cols=187 Identities=19% Similarity=0.261 Sum_probs=137.4
Q ss_pred CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC---CCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF---DSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~v~ 77 (262)
|+||.+.... ..+..+...+|.++|.|-.|+|||.-|+++++||.|++|.-...-.. ...++.....+......+.
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 5788888875 56788889999999999999999999999999999999976442110 0111111111122222221
Q ss_pred c--ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 78 D--LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 78 ~--~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
. .+.+.+-.+.....+..++.|.+-|.++.|+|..+++++|++|-..++||.. |+.+..-..|..+|++++|.|+ .
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-c
Confidence 1 1155555666666677788999999999999999999999999999999964 6677777789999999999999 5
Q ss_pred EEEEEeCCCeEEEEeCCC---------CCccEEEEEcCCCeEEEE
Q 042146 156 MIVTSSYDGLYRILDAST---------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~---------~~~~~l~~~~~dg~i~i~ 191 (262)
.++.++. .++++=..+. +||..+++|+..|.+.+=
T Consensus 240 ~~~v~S~-nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 DYLLWSY-NTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeeee-eeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 6666654 3455333333 889999999999977653
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=4.3e-17 Score=137.30 Aligned_cols=244 Identities=21% Similarity=0.301 Sum_probs=157.0
Q ss_pred cccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCC-CC--------CCCCCcccc-----------C
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFD-ST--------PPSPLQKFT-----------G 71 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~-~~--------~~~~~~~~~-----------~ 71 (262)
+.++..+..|...|..++.++.. .+|+|||.||+|++|++....... .. ......... .
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 45788889999999999988765 999999999999999986532210 00 000000000 0
Q ss_pred Cccccc-----------------------------------------------cceeEEEEecCCCccceecc--cCCcc
Q 042146 72 HEQGIS-----------------------------------------------DLATIRLWDVPTATSLKTLI--GHTNY 102 (262)
Q Consensus 72 ~~~~v~-----------------------------------------------~~~~i~v~d~~~~~~~~~~~--~~~~~ 102 (262)
..+.+. ..+.|..||........+++ ...+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 000000 00056677777665555443 34478
Q ss_pred eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccC---CCEEEEEe--CCCeEEEEeCCC---
Q 042146 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRD---GTMIVTSS--YDGLYRILDAST--- 173 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~~~d~~~--- 173 (262)
|++++.+|.+++++.|+..|.+.+||+|-+.++.... ++..+++.+..+|- ....++++ ..+.|.+|++..
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 9999999999999999999999999999887776653 24468888888772 24444444 577899999876
Q ss_pred ------------------------------------CCccEEEEEcCCCeEEEEecCCCcee-eEEeccCCceeEE----
Q 042146 174 ------------------------------------PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGYTNSKYCI---- 212 (262)
Q Consensus 174 ------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~---- 212 (262)
..+.++++|+.|..|+.||....+.. ..+.+........
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 23568999999999999998754332 1111110000000
Q ss_pred --EE---------------------------EEecCCCeeEEccccceEEEEEcCCC-CeEEEeeecCCCcEEEEe
Q 042146 213 --SS---------------------------TFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIWT 258 (262)
Q Consensus 213 --~~---------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~ 258 (262)
+. .........-..|..+|+++++.... .+|++++ .||.|+||+
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s--~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS--RDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec--CCCeeeecC
Confidence 00 00000111122288999999987654 5777888 899999995
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.8e-15 Score=121.96 Aligned_cols=198 Identities=37% Similarity=0.689 Sum_probs=156.9
Q ss_pred CCceeeecc---cccceecccCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 4 DRSLESFRP---YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 4 d~~i~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
|+.+..|+. ......+..|...|.++.|+|++.++++++. |+.+++|+..
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 186 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-------------------------- 186 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC--------------------------
Confidence 777777764 4678888999999999999999998988885 9998888553
Q ss_pred eeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeee-eeecCCCCeeeEEEccCCCEE
Q 042146 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l 157 (262)
.+..+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++..+
T Consensus 187 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (466)
T COG2319 187 ---------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLL 256 (466)
T ss_pred ---------CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEE
Confidence 3455566666999999999999988 55555999999999998787777 677887775 44899999889
Q ss_pred EEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe--ccCCceeEEEE
Q 042146 158 VTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS--GYTNSKYCISS 214 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~ 214 (262)
++++.|+.+++|+++. |++..+++++.|+.+.+||..+........ .
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---------- 326 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG---------- 326 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc----------
Confidence 9999999999999864 556777778888889999888777666554 2
Q ss_pred EEecCCCeeEEccccceEEEEEcCCCCeEEEe-eecCCCcEEEEeecc
Q 042146 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASG-ALDNDRTMKIWTQEK 261 (262)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~d~~i~iw~~~~ 261 (262)
|...+..+.|.+++..++.+ . .|+.+++|++..
T Consensus 327 ------------~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~ 360 (466)
T COG2319 327 ------------HEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRT 360 (466)
T ss_pred ------------cCCceEEEEECCCCCEEEEeec--CCCcEEeeecCC
Confidence 66678899884332555555 5 678999998754
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=4.7e-16 Score=115.56 Aligned_cols=148 Identities=16% Similarity=0.310 Sum_probs=113.1
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-----CCCCccccCCcc-------ccccceeEEEEecCCC
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-----PSPLQKFTGHEQ-------GISDLATIRLWDVPTA 90 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~~~~~~~~~-------~v~~~~~i~v~d~~~~ 90 (262)
..+|.++.++. +.|++.-.+ .|.|||+...+...... +.-+..+..+.. .-...+.|.+||..+-
T Consensus 87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45677777754 456666554 49999998754432211 111222222221 1122448999999999
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecCCCe-EEEEECCCCeeeeeeecCC--CCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVLPAHS--DPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
+++..+..|++++.+++|+|+|.+||++|+.|+ |+|+.+.+|+.+.+++... ..|.+++|+|++.+|++.+..++|+
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 999999999999999999999999999999996 7899999999999997543 3689999999999999999999999
Q ss_pred EEeCCC
Q 042146 168 ILDAST 173 (262)
Q Consensus 168 ~~d~~~ 173 (262)
+|.+..
T Consensus 244 iFKL~~ 249 (391)
T KOG2110|consen 244 IFKLEK 249 (391)
T ss_pred EEEecc
Confidence 999876
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=7.9e-17 Score=120.63 Aligned_cols=160 Identities=21% Similarity=0.350 Sum_probs=128.7
Q ss_pred CCCCceeeec---------ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146 2 SSDRSLESFR---------PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~---------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 71 (262)
|.|-++.+|+ ...++..|.+|...|--++|+|. .+.|++++.|.+|.+||+
T Consensus 101 SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv------------------- 161 (472)
T KOG0303|consen 101 SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV------------------- 161 (472)
T ss_pred CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec-------------------
Confidence 4577788885 24578889999999999999996 568999999999888854
Q ss_pred CccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEE
Q 042146 72 HEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDF 150 (262)
Q Consensus 72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~ 150 (262)
.+++.+.++. |...|.++.|+.+|.++++.+.|..|+|||.++++.+.+-.+|.+ .-..+.|
T Consensus 162 ----------------~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 162 ----------------GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred ----------------cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 5677676776 999999999999999999999999999999999999998888876 3455667
Q ss_pred ccCCCEEEEEe---CCCeEEEEeCCC----------------------CCccEE-EEEcCCCeEEEEecCCCc
Q 042146 151 NRDGTMIVTSS---YDGLYRILDAST----------------------PNGKFI-LVGTLDNTLRLWNYSTRK 197 (262)
Q Consensus 151 ~~~~~~l~~~~---~dg~i~~~d~~~----------------------~~~~~l-~~~~~dg~i~i~d~~~~~ 197 (262)
-.++..+-+|. .+..+.+||... ++...+ ++|-.|+.|+.|.+..-.
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 77888555553 577899999765 445544 556688999999887644
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=2.4e-17 Score=123.66 Aligned_cols=167 Identities=23% Similarity=0.359 Sum_probs=126.4
Q ss_pred CcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 22 HLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 22 h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
...+|.++.|.++.. .||||+.|..|++|.+......... .+-+.+..+..|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~--------------------------~~V~y~s~Ls~H~ 65 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD--------------------------MKVEYLSSLSRHT 65 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc--------------------------eeEEEeecccCCc
Confidence 346899999999876 9999999999999976542110000 0112344677899
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECC--------C--------CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIK--------T--------GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
..|+++.|+|+|.+|++|+.+|.|.+|-.. + -.....+.+|...|..++|+|++..+++++.
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~-- 143 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV-- 143 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--
Confidence 999999999999999999999999999765 2 1223455678899999999988877666654
Q ss_pred eEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146 165 LYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA 244 (262)
Q Consensus 165 ~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 244 (262)
|..+++||+..|+....+.. |...+..++|.|-+++++
T Consensus 144 --------------------dns~~l~Dv~~G~l~~~~~d----------------------h~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 144 --------------------DNSVRLWDVHAGQLLAILDD----------------------HEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred --------------------cceEEEEEeccceeEeeccc----------------------cccccceeecchhhhhhh
Confidence 55677788888888888877 777888889999888888
Q ss_pred EeeecCCCcEEEEeec
Q 042146 245 SGALDNDRTMKIWTQE 260 (262)
Q Consensus 245 ~~~~d~d~~i~iw~~~ 260 (262)
+-+ .|...+.+.++
T Consensus 182 s~s--~dr~~~~~~~~ 195 (434)
T KOG1009|consen 182 SKS--SDRHPEGFSAK 195 (434)
T ss_pred hhc--cCcccceeeee
Confidence 888 66655555543
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=3e-15 Score=117.35 Aligned_cols=235 Identities=10% Similarity=0.163 Sum_probs=146.1
Q ss_pred CCCceeeeccc-----ccceecccCcCceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCC---CC--CCCCCCc-ccc
Q 042146 3 SDRSLESFRPY-----TLTQTLNGHLRAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNF---DS--TPPSPLQ-KFT 70 (262)
Q Consensus 3 ~d~~i~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~---~~--~~~~~~~-~~~ 70 (262)
.|+.|..|+-. +.++.+. +.+....++++|++++|+++ ..++.|.+|+++..... .. ....+.. .+.
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~ 88 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD 88 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence 46778777632 2445554 34567789999999988766 45889999998632111 00 0001110 111
Q ss_pred CCccccc----cceeEEEEecCCCc----cceecccCCcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCeeee-----
Q 042146 71 GHEQGIS----DLATIRLWDVPTAT----SLKTLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKCLK----- 136 (262)
Q Consensus 71 ~~~~~v~----~~~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~----- 136 (262)
.....+. ..+.|.+|++.+.. .+..+. +......++++|+++++++ ...++.|.+||+.+...+.
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 1111111 12378999986432 122222 2344677889999998865 4566899999997633221
Q ss_pred --eeecCCCCeeeEEEccCCCEEEEEeC-CCeEEEEeCCC------------------------------CCccEEEEEc
Q 042146 137 --VLPAHSDPVTAIDFNRDGTMIVTSSY-DGLYRILDAST------------------------------PNGKFILVGT 183 (262)
Q Consensus 137 --~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~------------------------------~~~~~l~~~~ 183 (262)
... .......++|+|++++++++.. ++.|.+|++.. |++++++++.
T Consensus 168 ~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 168 EVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred ceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 111 1234578999999999988875 89999999751 5677777775
Q ss_pred C-CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 184 L-DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 184 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
. ++.|.+|++........+..+.. -......++++|+|++|+++.. .+++|.+|+++
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~-------------------~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQP-------------------TETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEe-------------------ccccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence 4 57888888754322112211100 1123457899999999998873 38999999885
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=3.5e-16 Score=126.37 Aligned_cols=190 Identities=17% Similarity=0.155 Sum_probs=129.4
Q ss_pred CCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 4 DRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 4 d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
+..|+.++ ...-.+.+..|...+.+..|+|||+.|+.++.++ .|++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~----------------------------- 233 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVH----------------------------- 233 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEE-----------------------------
Confidence 34566664 2223456677888999999999999999876532 45555
Q ss_pred eeEEEEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeec-CCCeEEE--EECCCCeeeeeeecCCCCeeeEEEccCC
Q 042146 80 ATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRI--WDIKTGKCLKVLPAHSDPVTAIDFNRDG 154 (262)
Q Consensus 80 ~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (262)
|+.+++. +..+.++ ...++|+|||+.|+.++ .+|.+.| ||+.+++. ..+..+...+....|+|||
T Consensus 234 ------dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG 303 (429)
T PRK01742 234 ------DLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDG 303 (429)
T ss_pred ------eCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCC
Confidence 4444432 2223333 34689999999887754 6776554 56666553 4555667778899999999
Q ss_pred CEEEEEe-CCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 155 TMIVTSS-YDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 155 ~~l~~~~-~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
+.|+.++ .+|...+|++.. |++++|+..+.++ +.+||+.+++.......
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~----------- 371 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST----------- 371 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-----------
Confidence 9776555 577788887532 6788887777655 55588887765432221
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
. ....+.|+|++++|+.++ .++.+.+|.+
T Consensus 372 -----------~--~~~~~~~sPdG~~i~~~s--~~g~~~~l~~ 400 (429)
T PRK01742 372 -----------F--LDESPSISPNGIMIIYSS--TQGLGKVLQL 400 (429)
T ss_pred -----------C--CCCCceECCCCCEEEEEE--cCCCceEEEE
Confidence 1 124578999999999999 7888888775
No 189
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=123.85 Aligned_cols=217 Identities=16% Similarity=0.247 Sum_probs=158.5
Q ss_pred cceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCC--CCCCCC------------------CccccCCc
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFD--STPPSP------------------LQKFTGHE 73 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~--~~~~~~------------------~~~~~~~~ 73 (262)
+++.| +|...-+.|..+|||+|+ |+|..--.|++||+.+....- ...... -..+..|.
T Consensus 44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 44444 478888999999999986 566677899999997743210 000000 00000000
Q ss_pred -----------------------cccccce---eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEE
Q 042146 74 -----------------------QGISDLA---TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127 (262)
Q Consensus 74 -----------------------~~v~~~~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 127 (262)
..+...+ .|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|-.|
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 0001111 78888999999999998888999999999999999999999999999
Q ss_pred ECCCCeeeeeee------cCCC-----CeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------C
Q 042146 128 DIKTGKCLKVLP------AHSD-----PVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------P 174 (262)
Q Consensus 128 d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~ 174 (262)
|.++...+..+. .|.+ .|+++.|+.+|-.+++|..+|.+.+||++. .
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 999876655543 2333 399999999999999999999999999998 1
Q ss_pred CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM 254 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i 254 (262)
++.--+.......++|||-.+|+....+. ....++.+++-|++.+++++- +++.+
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-----------------------pt~~lND~C~~p~sGm~f~An--e~~~m 337 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDECTGKPMASIE-----------------------PTSDLNDFCFVPGSGMFFTAN--ESSKM 337 (703)
T ss_pred CCCceEEecchHHhhhcccccCCceeecc-----------------------ccCCcCceeeecCCceEEEec--CCCcc
Confidence 22223334445789999999999988776 444588999999999999987 66665
Q ss_pred EEE
Q 042146 255 KIW 257 (262)
Q Consensus 255 ~iw 257 (262)
..|
T Consensus 338 ~~y 340 (703)
T KOG2321|consen 338 HTY 340 (703)
T ss_pred eeE
Confidence 544
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.2e-17 Score=126.11 Aligned_cols=177 Identities=21% Similarity=0.354 Sum_probs=137.4
Q ss_pred CCCCceeeec----------ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146 2 SSDRSLESFR----------PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 71 (262)
+.|++|..|. ..+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++.... +.
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~--dp----------- 379 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ--DP----------- 379 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC--Cc-----------
Confidence 4567766553 356888999999999999999999999999999999999875211 00
Q ss_pred CccccccceeEEEEecCCC-ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee---------------
Q 042146 72 HEQGISDLATIRLWDVPTA-TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--------------- 135 (262)
Q Consensus 72 ~~~~v~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------------- 135 (262)
+|.... .....+.+|.+.|+.+++++....|++++.||+++.|+.....+.
T Consensus 380 -------------~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 380 -------------DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD 446 (577)
T ss_pred -------------ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence 111111 223457899999999999999999999999999999987543220
Q ss_pred -----------------------------eeee-------cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146 136 -----------------------------KVLP-------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 136 -----------------------------~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 173 (262)
..+. .-...+..+.++|.....+++..|+.|+++|..+
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 0000 0112467788899999999999999999999876
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
+++.+|++++.|+.+++|.+....++.....
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 8999999999999999999987777766654
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.5e-15 Score=105.29 Aligned_cols=181 Identities=16% Similarity=0.246 Sum_probs=122.6
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC-------CCCCCCCC-----Cc-----cccCCcccc-
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-------FDSTPPSP-----LQ-----KFTGHEQGI- 76 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~-----~~-----~~~~~~~~v- 76 (262)
.+...++|.++|..++|+ ..+|++|+ ||.|+=|.-.+... .+...+.. .. .+......+
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 445568999999999998 44677776 59999887543211 01111100 00 011122222
Q ss_pred --ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC---------C-CC
Q 042146 77 --SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH---------S-DP 144 (262)
Q Consensus 77 --~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~-~~ 144 (262)
...+.++-||+++|+..+.+++|.+.|.++.--.....+++|++||++++||.++++.+..+... . ..
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence 12338999999999999999999999999998666778999999999999999999988877432 1 23
Q ss_pred eeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 145 VTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
|-+++. +...|+.|+ ...+.+|.+++ ...+.++++++...+.-|.+. |.+....
T Consensus 211 igala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~i 281 (325)
T KOG0649|consen 211 IGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANI 281 (325)
T ss_pred eEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec-cEEEEec
Confidence 445544 455666554 57799999998 245666777766677777654 4443333
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=122.98 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=97.0
Q ss_pred cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec-CCCccceecccCC
Q 042146 23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV-PTATSLKTLIGHT 100 (262)
Q Consensus 23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~-~~~~~~~~~~~~~ 100 (262)
+..|+|+.|-|- ...|+++-.+|.+.+||.+......... +..+..+- .-.|..|.- .+..++..+.--.
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~------~~~~k~~~--~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS------YQALKDGD--QFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc------ccccCCCC--eeEEeeeeccccCCccceeEecc
Confidence 478999999884 4467777889999999874322111111 11100000 001222221 1224444454455
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
..|+..+|+|||++||+.+.||.++|+|..+.+++-.++..-+...|++|||||+++++|+.|.-|.+|.+.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 689999999999999999999999999999988877777777889999999999888877777666555544
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=2.9e-16 Score=125.20 Aligned_cols=194 Identities=19% Similarity=0.383 Sum_probs=144.4
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
.|..++|-|||..|+.+..+ . +.+||...|..+.++++|++.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-r-----------------------------------lliyD~ndG~llqtLKgHKDtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-R-----------------------------------LLVYDTSDGTLLQPLKGHKDTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecCC-E-----------------------------------EEEEeCCCcccccccccccceEE
Confidence 79999999999988776644 2 55668888999999999999999
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------- 173 (262)
|++|+.+|+.+++|+.|..|.+|+..-.- +..+ .|...|.||.|.|-...|++|+... .-+|....
T Consensus 58 cVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R 134 (1081)
T KOG1538|consen 58 CVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSR 134 (1081)
T ss_pred EEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhhhhhee
Confidence 99999999999999999999999854222 2233 5899999999999988999988543 34666443
Q ss_pred -------CCccEEEEEcCCCeEEEEecCCCceeeEEe---ccCCceeEEEEEEecC---------------------CCe
Q 042146 174 -------PNGKFILVGTLDNTLRLWNYSTRKILKTYS---GYTNSKYCISSTFSVT---------------------NGK 222 (262)
Q Consensus 174 -------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------------~~~ 222 (262)
.||++++.|-.+|+|.+-+- +++.-..+. +...+++.+....... +++
T Consensus 135 ~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 135 IICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred EEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 78999999999999998764 344433333 2445555555433322 222
Q ss_pred eEEc---cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 223 YIVS---HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 223 ~~~~---~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
++.. -.-...|+.+.|+|.++..|| .|+.+++|..+
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGG--sdk~L~~fTR~ 252 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGG--SDKQLSLFTRD 252 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEcc--CCCceEEEeec
Confidence 2211 112356888889999999999 88999988643
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=117.58 Aligned_cols=126 Identities=24% Similarity=0.441 Sum_probs=105.7
Q ss_pred CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC-----------------
Q 042146 113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST----------------- 173 (262)
Q Consensus 113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~----------------- 173 (262)
..++++.+.|.|++||..+++.+..++++...++.+.|.. .+..+.+|+.||+|++||+|.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 466899999999999999998
Q ss_pred ------CCccEEEEEc----CCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-C
Q 042146 174 ------PNGKFILVGT----LDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-N 241 (262)
Q Consensus 174 ------~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~ 241 (262)
.+++.+++|+ .+-.|.+||+|..+. +..+.. .|.+-|+++.|+|.. +
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e---------------------SH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE---------------------SHNDDVTQLRFHPSDPN 179 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh---------------------hccCcceeEEecCCCCC
Confidence 1456666665 345789999998665 554432 199999999999975 5
Q ss_pred eEEEeeecCCCcEEEEeecc
Q 042146 242 IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 242 ~l~~~~~d~d~~i~iw~~~~ 261 (262)
+|++|| -||-|.|||+++
T Consensus 180 lLlSGS--vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 180 LLLSGS--VDGLVNLFDTKK 197 (376)
T ss_pred eEEeec--ccceEEeeecCC
Confidence 888999 899999999975
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=7.7e-16 Score=119.81 Aligned_cols=229 Identities=12% Similarity=0.171 Sum_probs=150.7
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-----CCccc-----cCCcccc----ccceeEEEEe
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-----PLQKF-----TGHEQGI----SDLATIRLWD 86 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~~-----~~~~~~v----~~~~~i~v~d 86 (262)
.|...|.|+.|+.+...+.+++.+..+.-|++..........+. ..... .+..... +..+.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 57777889999998887766665555555555432211111110 00000 0011100 1112333333
Q ss_pred cCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC--
Q 042146 87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG-- 164 (262)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 164 (262)
..++.......|.+.+.+-.|+|+|.-|+++++||.|++|. ++|....++.....+|.|++|.|+++.++-|..+.
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~ 169 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHIS 169 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEE
Confidence 34556667788999999999999999999999999999998 77776666666678999999999877555443321
Q ss_pred --------eEEEEeCCC---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc-
Q 042146 165 --------LYRILDAST---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS- 226 (262)
Q Consensus 165 --------~i~~~d~~~---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (262)
.+.-|.... +..+.+++|++|-..+|||-. |+.+..-..|+.++..+ +|.++....+..
T Consensus 170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSv--a~npd~~~~v~S~ 246 (737)
T KOG1524|consen 170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSV--AFNPEKDYLLWSY 246 (737)
T ss_pred EeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeee--eeccccceeeeee
Confidence 122233222 678899999999999999964 67776666666655554 444443333333
Q ss_pred --------cccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 227 --------HRDPVISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 227 --------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
..+.|..++|||||..++.|. ..|.+.+
T Consensus 247 nt~R~~~p~~GSifnlsWS~DGTQ~a~gt--~~G~v~~ 282 (737)
T KOG1524|consen 247 NTARFSSPRVGSIFNLSWSADGTQATCGT--STGQLIV 282 (737)
T ss_pred eeeeecCCCccceEEEEEcCCCceeeccc--cCceEEE
Confidence 457899999999999999998 7777643
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=6.8e-15 Score=119.26 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=152.9
Q ss_pred ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCC--------CCCCCc--cccC--Cc---cc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDST--------PPSPLQ--KFTG--HE---QG 75 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~--------~~~~~~--~~~~--~~---~~ 75 (262)
+.++...+. -..+|.|+.|+|. ..++|.|..+|+|.+||+......... ...+.. .+.. +. ..
T Consensus 232 p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 232 PNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence 445555554 4688999999994 667888899999999999875432100 000100 0111 11 12
Q ss_pred cccceeEEEEecCCCccce------ecc------cCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC---CCe-----e
Q 042146 76 ISDLATIRLWDVPTATSLK------TLI------GHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK---TGK-----C 134 (262)
Q Consensus 76 v~~~~~i~v~d~~~~~~~~------~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~---~~~-----~ 134 (262)
+..++.|..|+++.-.... ... .....+++++|.| +...++.|+..|.|.--+-. ... .
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 2345588999876433211 111 1234689999998 67789999999998874322 211 1
Q ss_pred eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEe
Q 042146 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d 192 (262)
...+..|.++|+++.++|-+..++..+.|.++++|.... .....++++..+|.|.+||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 334556889999999999776555555599999999873 2345788888999999999
Q ss_pred cCCCc--eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 193 YSTRK--ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 193 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.... ++.+... +....+.+.|++.|+.|++|. ..|++.+|++..
T Consensus 471 Ll~~~~~Pv~s~~~----------------------~~~~l~~~~~s~~g~~lavGd--~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKV----------------------CSPALTRVRWSPNGKLLAVGD--ANGTTHILKLSE 517 (555)
T ss_pred hhccccCCcccccc----------------------cccccceeecCCCCcEEEEec--CCCcEEEEEcCc
Confidence 97543 3333332 445667888999999999999 899999999853
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.6e-16 Score=116.86 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=118.4
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC----C--ccccCCc-
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP----L--QKFTGHE- 73 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~--~~~~~~~- 73 (262)
.||+++.|+ ....+....+|.+.|.++.|+|||+.|++-+.| ..+||+.+.........+.. . ..+....
T Consensus 164 ~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 164 TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 578888876 556777788999999999999999999999999 99999998764333222111 0 1111101
Q ss_pred -ccccc-----------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ec
Q 042146 74 -QGISD-----------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PA 140 (262)
Q Consensus 74 -~~v~~-----------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~ 140 (262)
..+.. ...+.+|+-..--...+...-...|++++++++|++++.|+.||.|-|++..+.+.++.. +.
T Consensus 243 ~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a 322 (398)
T KOG0771|consen 243 QETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA 322 (398)
T ss_pred CceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh
Confidence 01100 113444443211112222223457999999999999999999999999999888776655 56
Q ss_pred CCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
|...|+.+.|+|+.+++++.+.+....+..+
T Consensus 323 H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 323 HLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred heeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999999999999999999888877665543
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=4e-15 Score=108.80 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=125.7
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
.++..++++.|...|++++|+|..+.|++++.|+.-++|..... .+.+
T Consensus 44 ~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~--------------------------------~~Wk 91 (361)
T KOG1523|consen 44 LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG--------------------------------GTWK 91 (361)
T ss_pred CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC--------------------------------Ceec
Confidence 47788999999999999999999999999999999999954210 1344
Q ss_pred cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee----eeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL----KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
+...+..++...+++.|+|.++.+++|+....|.||-++...-= +.-+.+.+.|+++.|+|++-+|++|+.|+..+
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 55556678899999999999999999999999999988754321 23345678899999999999999999999999
Q ss_pred EEeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCCCc
Q 042146 168 ILDAST--------------------------------------PNGKFILVGTLDNTLRLWNYSTRK 197 (262)
Q Consensus 168 ~~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~ 197 (262)
+|...- ++|..|+-.+.|+.+.+-|.....
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 997432 678888888888888887766543
No 199
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.6e-14 Score=104.52 Aligned_cols=192 Identities=15% Similarity=0.258 Sum_probs=121.0
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----CCC----------CccccCCccccccceeEEEEecCCC
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSP----------LQKFTGHEQGISDLATIRLWDVPTA 90 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~----------~~~~~~~~~~v~~~~~i~v~d~~~~ 90 (262)
...+++|+.|...+++|.++| .+||+++..+...... +.. +....+...+-..-..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 355699999999898887655 7999987743311111 000 0011122223344447888885555
Q ss_pred ccceecccCCcceEEEEEeCCC------------------------------------------CEEEe-ecCCCeEEEE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQS------------------------------------------NRIVS-DTFNETIRIW 127 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~------------------------------------------~~l~~-~~~dg~i~vw 127 (262)
.++.++. ...+|.++.+.++. .+|+. |-.-|.|.|-
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV 164 (346)
T ss_pred cEEEEEE-eccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence 5554443 34445555554321 11111 2223444444
Q ss_pred ECCCCee--eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 128 DIKTGKC--LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 128 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
|+...+. ...+.+|.+.|.|++.+.+|.++|++|..|++ |||||..+|+++.+++..
T Consensus 165 dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL---------------------IRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 165 DLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL---------------------IRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE---------------------EEEEEcCCCcEeeeeecC
Confidence 4443322 24455677777777777777777776666654 899999999999999753
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
. ....|.+|+|||+..+||++| +.|+|+||.+..
T Consensus 224 ~--------------------d~A~iy~iaFSp~~s~LavsS--dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 V--------------------DRADIYCIAFSPNSSWLAVSS--DKGTLHIFSLRD 257 (346)
T ss_pred C--------------------chheEEEEEeCCCccEEEEEc--CCCeEEEEEeec
Confidence 3 556799999999999999999 899999998863
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=9.3e-15 Score=118.47 Aligned_cols=180 Identities=21% Similarity=0.328 Sum_probs=130.5
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee--eeee----ecCCCCeeeEEEccC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC--LKVL----PAHSDPVTAIDFNRD 153 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~v~~~~~~~~ 153 (262)
.+.+|++...........-...|.|++|+| +..+++.|+.+|.|.+||++.+.. ...+ ..|..+++.+.|.++
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 589999987744433334567899999999 778899999999999999987654 2222 358889999999875
Q ss_pred CC--EEEEEeCCCeEEEEeCCC---------------------------------CCccEEEEEcCCCeEEEEecCCC--
Q 042146 154 GT--MIVTSSYDGLYRILDAST---------------------------------PNGKFILVGTLDNTLRLWNYSTR-- 196 (262)
Q Consensus 154 ~~--~l~~~~~dg~i~~~d~~~---------------------------------~~~~~l~~~~~dg~i~i~d~~~~-- 196 (262)
.. -|++++.||.|..|+++. .+...+++|+++|.|.--+....
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 44 499999999999999876 45677999999999887433322
Q ss_pred ------ceeeEEeccCCceeEEEEEEecCCCeeEEc---------------------cccceEEEEEcCCCCeEEEeeec
Q 042146 197 ------KILKTYSGYTNSKYCISSTFSVTNGKYIVS---------------------HRDPVISVASHPAKNIIASGALD 249 (262)
Q Consensus 197 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~~p~~~~l~~~~~d 249 (262)
+....+..|...+.++..........+..+ +...|++++|||....++....
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d- 461 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD- 461 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc-
Confidence 123345556667777665444333333333 4556999999998875554432
Q ss_pred CCCcEEEEeecc
Q 042146 250 NDRTMKIWTQEK 261 (262)
Q Consensus 250 ~d~~i~iw~~~~ 261 (262)
.||.|.+||+..
T Consensus 462 ~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 462 GDGNLDIWDLLQ 473 (555)
T ss_pred CCCceehhhhhc
Confidence 699999999864
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2e-14 Score=120.09 Aligned_cols=218 Identities=18% Similarity=0.299 Sum_probs=146.4
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC-----Ccc---ccCCccc----cccceeEEEEecC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP-----LQK---FTGHEQG----ISDLATIRLWDVP 88 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~---~~~~~~~----v~~~~~i~v~d~~ 88 (262)
+..++-..+.|+|-...++++...-.|++||.+....+....... +.. +...... ..+.+.|+||+-.
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 334467788999999999999988899999988765543332211 111 1111111 1233489999753
Q ss_pred CC-----ccceecc-------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEcc-CC
Q 042146 89 TA-----TSLKTLI-------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNR-DG 154 (262)
Q Consensus 89 ~~-----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~ 154 (262)
.. +.+..+. +..+.-.-+.|.....+|++++.-..|+|||....+++..+... +..++++.-+. .|
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 22 2222221 11122244567776666666666789999999988877776543 34667765544 57
Q ss_pred CEEEEEeCCCeEEEEeCCC-------------------------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146 155 TMIVTSSYDGLYRILDAST-------------------------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~-------------------------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 208 (262)
+.+++|..||.|++||.|. ++| ..|++|+.+|.|++||++.......+.-
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---- 1297 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---- 1297 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee----
Confidence 9999999999999999987 222 2599999999999999997522222211
Q ss_pred eeEEEEEEecCCCeeEEcc---ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 209 KYCISSTFSVTNGKYIVSH---RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..| .+..+++..|++.+.+|+|+ . +.|+||++..
T Consensus 1298 ----------------v~~~~yGs~lTal~VH~hapiiAsGs--~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1298 ----------------VAHWEYGSALTALTVHEHAPIIASGS--A-QLIKIYSLSG 1334 (1387)
T ss_pred ----------------eeccccCccceeeeeccCCCeeeecC--c-ceEEEEecCh
Confidence 002 23589999999999999998 6 8999999864
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.7e-16 Score=120.84 Aligned_cols=154 Identities=18% Similarity=0.371 Sum_probs=118.4
Q ss_pred cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCCeeeEEEcc--CCCEEEEEeCCCeEEE
Q 042146 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDPVTAIDFNR--DGTMIVTSSYDGLYRI 168 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~ 168 (262)
....+.+|.+-|+|++|+.+|.+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|-| +.+.+++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44567899999999999999999999999999999999888887776 57999999999999 5568999999999999
Q ss_pred EeCCC------------------------------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 169 LDAST------------------------------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 169 ~d~~~------------------------------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
||+.. |++ +.+.++++||+|+-||++.......-.. -...+...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~--~~~~l~ny--- 196 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED--CPSILVNY--- 196 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc--ccHHHHHh---
Confidence 99985 455 7899999999999999986322111000 00000000
Q ss_pred cCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEee
Q 042146 218 VTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 218 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~ 259 (262)
. ..--...++..+|... +|+.|+ .|--.++||.
T Consensus 197 --~-----~~lielk~ltisp~rp~~laVGg--sdpfarLYD~ 230 (758)
T KOG1310|consen 197 --N-----PQLIELKCLTISPSRPYYLAVGG--SDPFARLYDR 230 (758)
T ss_pred --c-----hhhheeeeeeecCCCCceEEecC--CCchhhhhhh
Confidence 0 0113467899999765 678888 7889999984
No 203
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=4e-15 Score=109.17 Aligned_cols=120 Identities=26% Similarity=0.505 Sum_probs=103.2
Q ss_pred CCcceEEEEEeC----CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 042146 99 HTNYVFCINFNP----QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP 174 (262)
Q Consensus 99 ~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 174 (262)
|......++|.- ...++++|+.-|.|+|.|+.++++...+.+|...|+.+.++|+.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-------------------- 147 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-------------------- 147 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC--------------------
Confidence 556677777764 25678899999999999999999999999999999999999954
Q ss_pred CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM 254 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i 254 (262)
.+++++++.|..|++||+++..++..+.+.+. |.+.|.++.|++++.+++++| -|.+|
T Consensus 148 -~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-------------------HrdeVLSvD~~~~gd~i~ScG--mDhsl 205 (385)
T KOG1034|consen 148 -PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-------------------HRDEVLSVDFSLDGDRIASCG--MDHSL 205 (385)
T ss_pred -CcEEEEecCCceEEEEeccCCeEEEEeccccc-------------------ccCcEEEEEEcCCCCeeeccC--CcceE
Confidence 23456667778889999999999999887443 999999999999999999999 78999
Q ss_pred EEEeec
Q 042146 255 KIWTQE 260 (262)
Q Consensus 255 ~iw~~~ 260 (262)
++|+++
T Consensus 206 k~W~l~ 211 (385)
T KOG1034|consen 206 KLWRLN 211 (385)
T ss_pred EEEecC
Confidence 999997
No 204
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.66 E-value=1.8e-14 Score=106.47 Aligned_cols=168 Identities=20% Similarity=0.319 Sum_probs=119.2
Q ss_pred CCCCceeeecccccceec----ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFRPYTLTQTL----NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|.|++++.|......+.. ..-..+++++.+.++...|+.|-..|++.-+.+....+... .......|...+.
T Consensus 43 s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~----~~r~~~~h~~~v~ 118 (404)
T KOG1409|consen 43 SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT----FLKDYLAHQARVS 118 (404)
T ss_pred cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc----hhhhhhhhhccee
Confidence 568888888654433322 33578899999999999999999999999988754211110 0000001100000
Q ss_pred cce------------------------------------------------------eEE--EEecCCCccceecccCCc
Q 042146 78 DLA------------------------------------------------------TIR--LWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 78 ~~~------------------------------------------------------~i~--v~d~~~~~~~~~~~~~~~ 101 (262)
.+. .|. -.....-..+.++.+|.+
T Consensus 119 ~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~ 198 (404)
T KOG1409|consen 119 AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG 198 (404)
T ss_pred eEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc
Confidence 000 111 111223455667889999
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
.+.+++|.|...++++|..|..+.+||+--++ ...++.+|...|..+...+.-+.+++++.||.|.+|++..
T Consensus 199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999999999999999996443 3456778999999999999889999999999999999876
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-14 Score=115.53 Aligned_cols=244 Identities=17% Similarity=0.271 Sum_probs=167.2
Q ss_pred Cceeeec--ccccceecccCcCceEEEEEccCC---CeEEEecCCCeEEEeecCCCCCCCCCCCC---------------
Q 042146 5 RSLESFR--PYTLTQTLNGHLRAVSYVKFSHDG---RLLTSSSAEKTLLTYSLSSISNFDSTPPS--------------- 64 (262)
Q Consensus 5 ~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--------------- 64 (262)
..|.+|. +...+..+++|..+++.+.+.|.. .++++++.||.|++||.............
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~ 116 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADI 116 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCc
Confidence 3444554 556777899999999999998854 47889999999999997653221100000
Q ss_pred ------------CCccc------------------------cCC--cccc-----------ccceeEEEEecCCCccce-
Q 042146 65 ------------PLQKF------------------------TGH--EQGI-----------SDLATIRLWDVPTATSLK- 94 (262)
Q Consensus 65 ------------~~~~~------------------------~~~--~~~v-----------~~~~~i~v~d~~~~~~~~- 94 (262)
....+ ..+ ...+ .-...+.+|+..++....
T Consensus 117 s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~ 196 (792)
T KOG1963|consen 117 SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTS 196 (792)
T ss_pred cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeec
Confidence 00000 000 0000 000067777776644111
Q ss_pred ---ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC--C--eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 95 ---TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT--G--KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 95 ---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
.-..|.-.+++.+++|+++++++|..||.|.+|.--. . ...+.+.-|..+|++++|+++|.+|++|+.+|.+.
T Consensus 197 ~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 197 SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 1124666789999999999999999999999996322 1 22445666889999999999999999999999999
Q ss_pred EEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146 168 ILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR 228 (262)
Q Consensus 168 ~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (262)
+|.+.+ |++.+.+....|..|.+....+.....++.+........ -....
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~-----------k~~~~ 345 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST-----------KTRPQ 345 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc-----------ccccc
Confidence 999877 889999999999999999887766666665533221110 00034
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+-.+.++++|.-+.++-.+ ..|.|.+||+-+
T Consensus 346 ~l~t~~~idpr~~~~vln~--~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNG--HPGHVQFYDLYT 376 (792)
T ss_pred ccceeEEEcCCCCceeecC--CCceEEEEeccc
Confidence 4567888899666666666 789999998754
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=5.4e-16 Score=118.47 Aligned_cols=174 Identities=23% Similarity=0.341 Sum_probs=145.8
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
.-..+.++.+|++|+.|+.-|.|-.+ |..+++....+. -...|.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~-----------------------------------Dw~t~~L~~Ei~-v~Etv~ 174 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAF-----------------------------------DWVTKKLHFEIN-VMETVR 174 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeee-----------------------------------ecccceeeeeee-hhhhhh
Confidence 34578899999999999999987666 445555555543 346688
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------- 173 (262)
.+.|..+.+++|++- ...++||| +.|..++.++.| ..|..+.|-|..-+|++++..|.++.-|+..
T Consensus 175 Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 175 DVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred hhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC
Confidence 889988888887775 56899999 668888888764 5689999999999999999999999999876
Q ss_pred ---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA 244 (262)
Q Consensus 174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 244 (262)
|-+..+-+|...|+|.+|.....+++..+.. |.++|.++++.|+|.++|
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc----------------------H~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC----------------------HRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh----------------------cCCCcceEEECCCCcEEe
Confidence 6677888999999999999998888776655 999999999999999999
Q ss_pred EeeecCCCcEEEEeecc
Q 042146 245 SGALDNDRTMKIWTQEK 261 (262)
Q Consensus 245 ~~~~d~d~~i~iw~~~~ 261 (262)
|+| -|..++|||+.+
T Consensus 310 TtG--~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 310 TTG--LDRKVKIWDLRN 324 (545)
T ss_pred ecc--cccceeEeeecc
Confidence 999 889999999864
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.7e-15 Score=117.72 Aligned_cols=104 Identities=16% Similarity=0.318 Sum_probs=88.4
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL 93 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~ 93 (262)
.++..+.--++.|+.++|+|||++||+.+.||.+||+|+. +.+.+
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-----------------------------------t~eLl 325 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-----------------------------------TQELL 325 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeecc-----------------------------------HHHHH
Confidence 3455555556789999999999999999999999988653 33444
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 152 (262)
..++.--+...|++|+|||+++++|++|..|.||.+..++.+..-.+|++.|..++|.|
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 44444457799999999999999999999999999999999999999999999999996
No 208
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.2e-15 Score=117.68 Aligned_cols=174 Identities=17% Similarity=0.364 Sum_probs=138.4
Q ss_pred ecccCcCceEEEEEccCCCeEEEecCC---CeEEEeecCCCCCCCCCC--CCCCccccCCc----cccccceeEEEEecC
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSAE---KTLLTYSLSSISNFDSTP--PSPLQKFTGHE----QGISDLATIRLWDVP 88 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~----~~v~~~~~i~v~d~~ 88 (262)
..-.|.++|+.+.|+..|.||++...+ ..|.|+++.......... .........|. ..|.....|++||+.
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~ 595 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS 595 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehh
Confidence 334689999999999999999997654 578999887643322111 11111112222 223344489999999
Q ss_pred CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
....++.+......|..++++|.|.-|+.|+.|+.+..+|+.- .++.+.+..|...+++++|++.-.+|++|+.||++.
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 9888888888888999999999999999999999999999974 467778889999999999999999999999999999
Q ss_pred EEeCCC---------------------------------CCccEEEEEcCCCeEEEE
Q 042146 168 ILDAST---------------------------------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 168 ~~d~~~---------------------------------~~~~~l~~~~~dg~i~i~ 191 (262)
+|.-.. |...+|++++.||+|++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 986433 778899999999999998
No 209
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=2.3e-14 Score=105.08 Aligned_cols=179 Identities=17% Similarity=0.287 Sum_probs=121.1
Q ss_pred CCCCceeeecc--cccceeccc--CcC---ceEEEEEccCCCeEEEecCCCeEEEeecCC-CCCCCCC---------CCC
Q 042146 2 SSDRSLESFRP--YTLTQTLNG--HLR---AVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-ISNFDST---------PPS 64 (262)
Q Consensus 2 s~d~~i~~~~~--~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~---------~~~ 64 (262)
|+|+.|..|+. .++...+++ |.. +-.+++|+|||.+|++|- .+.|+++|+.. ....... ...
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 45666777763 334444443 322 346899999999998865 58999999843 2211110 011
Q ss_pred CCcccc--CCccccccce----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCC-Ceeee
Q 042146 65 PLQKFT--GHEQGISDLA----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKT-GKCLK 136 (262)
Q Consensus 65 ~~~~~~--~~~~~v~~~~----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~ 136 (262)
.+..+. .+......++ .+-++.-..+.++..+-+|.+.|+.++|.++|+.|++|+. |-.|..||++. ..++.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 111222 2222222222 6677777788899999999999999999999999999885 66899999985 45677
Q ss_pred eeecCCC-Ceee--EEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEE
Q 042146 137 VLPAHSD-PVTA--IDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV 181 (262)
Q Consensus 137 ~~~~~~~-~v~~--~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~ 181 (262)
.+..|.+ .-.. ....|.+++|++|+.||.|++||+..+.....+.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 7776655 2223 4456899999999999999999999844433333
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=115.80 Aligned_cols=217 Identities=18% Similarity=0.245 Sum_probs=154.0
Q ss_pred eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC---ccccCCcc--ccccceeEE
Q 042146 9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL---QKFTGHEQ--GISDLATIR 83 (262)
Q Consensus 9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~--~v~~~~~i~ 83 (262)
+|.+.++...+.. ...|.++.|-.+..+||++. .+.+.|||-.............. ..++.|-. .....+.++
T Consensus 157 Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~ 234 (545)
T KOG1272|consen 157 DWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLK 234 (545)
T ss_pred ecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceE
Confidence 4557777666654 46688888888888777766 47888888765433222221111 12222221 122233677
Q ss_pred EEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
.-|+.+|+.+..+....+.+..|+-+|-...+-.|...|+|.+|...+.+++..+..|.++|.++++.++|+++++++.|
T Consensus 235 Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 235 YQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred EEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence 78999999999998888999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEe-cCCCc--eeeEEeccCCceeEEEEEEecCCCee
Q 042146 164 GLYRILDAST-----------------PNGKFILVGTLDNTLRLWN-YSTRK--ILKTYSGYTNSKYCISSTFSVTNGKY 223 (262)
Q Consensus 164 g~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (262)
..++|||+|. -..+-+++.+....+.||. .-.+. ....+..|.
T Consensus 315 r~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~----------------- 377 (545)
T KOG1272|consen 315 RKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHR----------------- 377 (545)
T ss_pred cceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhc-----------------
Confidence 9999999997 1233344445555788884 22211 111222211
Q ss_pred EEccccceEEEEEcCCCCeEEEee
Q 042146 224 IVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 224 ~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
..++|..+.|.|-...|-.|.
T Consensus 378 ---~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 378 ---CGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred ---cCcccccceeccHHHeeeccc
Confidence 345788888888766665554
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.1e-14 Score=104.04 Aligned_cols=150 Identities=18% Similarity=0.348 Sum_probs=107.3
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC--CCCCCCCCCcc-----ccCCccccccceeEEEEecCCC----c
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN--FDSTPPSPLQK-----FTGHEQGISDLATIRLWDVPTA----T 91 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~-----~~~~~~~v~~~~~i~v~d~~~~----~ 91 (262)
+-.+..++|++.-..||++..|-.|++|+-..... ......+.+.. +.+....|.+-+-|.+|..... .
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 45688899999877899999999999998654211 11111122222 2223334445558999976431 1
Q ss_pred c----------ceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 92 S----------LKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 92 ~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
. +...++| .+|++|+|++||..+++++. |..|.|||+.++..+.......+.++-+.||||+.+|+++
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 1122344 68999999999999998875 5689999999998776665556788999999999999999
Q ss_pred eCCCeEEEEeCCC
Q 042146 161 SYDGLYRILDAST 173 (262)
Q Consensus 161 ~~dg~i~~~d~~~ 173 (262)
.-|+..++|....
T Consensus 257 t~davfrlw~e~q 269 (445)
T KOG2139|consen 257 TCDAVFRLWQENQ 269 (445)
T ss_pred cccceeeeehhcc
Confidence 9999999995443
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.4e-12 Score=95.55 Aligned_cols=165 Identities=16% Similarity=0.271 Sum_probs=117.7
Q ss_pred Cceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC-CCCC---CCCC-CCCCccccCCccc--
Q 042146 5 RSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-ISNF---DSTP-PSPLQKFTGHEQG-- 75 (262)
Q Consensus 5 ~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~---~~~~-~~~~~~~~~~~~~-- 75 (262)
+.+-+|+..+ ++.++. ...+|.++.+.++ .+++.- .+.|.+|.... .+.. +... +.-+..+..+...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 4455666443 444443 5788999999776 354443 57999998863 2111 1111 1112222111110
Q ss_pred ----cccceeEEEEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCe-EEEEECCCCeeeeeeecC--CCCee
Q 042146 76 ----ISDLATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVLPAH--SDPVT 146 (262)
Q Consensus 76 ----v~~~~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~--~~~v~ 146 (262)
-...+.|++-|+...+. ...+.+|...|.|++.+.+|.++|++|..|+ |+|||.+++.++.+++.. ...|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 01113788999876554 4778899999999999999999999999996 889999999999998653 34799
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 147 AIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+|+|||++.+|+++|.-|++.+|.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999999886
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.9e-15 Score=107.75 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=104.4
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
.+.......|.++|.++.|.+....=++|+.+..+..|+++. +...-+.
T Consensus 195 ~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~-------------------------------s~gslq~ 243 (323)
T KOG0322|consen 195 SKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH-------------------------------STGSLQI 243 (323)
T ss_pred cccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc-------------------------------ccCcccc
Confidence 355566678999999999998777778888888888887643 1111111
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
-.+..-....|..+.+-||++.+|+++.|+.|+||..++.+++..++.|++.|++++|+|+...+++++.|++|.+|++
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1122222345888999999999999999999999999999999999999999999999999999999999999999986
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=6.4e-13 Score=107.39 Aligned_cols=192 Identities=10% Similarity=0.139 Sum_probs=120.9
Q ss_pred ceeeec-ccccceecccCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 6 SLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 6 ~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
.|+.++ .....+.+..+...+.+.+|+|||+.|+..+. +..|.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~--------------------------------- 226 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV--------------------------------- 226 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEE---------------------------------
Confidence 355554 22233445556778999999999999887542 22344
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEee-cCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD-TFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
+|++.+++... +......+...+|+|||+.|+.. +.+| .|.+||+.+++... +..+...+....|+|+|+.|+
T Consensus 227 --i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 227 --IQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred --EEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEE
Confidence 44554443221 11122334468999999988754 4444 59999998876544 334455678899999999887
Q ss_pred EEeCC-CeEEEE--eCCC-------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 159 TSSYD-GLYRIL--DAST-------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 159 ~~~~d-g~i~~~--d~~~-------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
..+.+ +...+| |+.. |++++++..+.+ ..|.+||+.+++.. .+..
T Consensus 303 f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--------- 372 (429)
T PRK03629 303 YTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--------- 372 (429)
T ss_pred EEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---------
Confidence 76653 444444 5443 678877765433 35778888776543 2221
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc---EEEEeec
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT---MKIWTQE 260 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~---i~iw~~~ 260 (262)
........|+|||+.|+.++ .++. +.+++++
T Consensus 373 --------------~~~~~~p~~SpDG~~i~~~s--~~~~~~~l~~~~~~ 406 (429)
T PRK03629 373 --------------TFLDETPSIAPNGTMVIYSS--SQGMGSVLNLVSTD 406 (429)
T ss_pred --------------CCCCCCceECCCCCEEEEEE--cCCCceEEEEEECC
Confidence 01123578999999999988 5553 5666654
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.6e-13 Score=109.17 Aligned_cols=194 Identities=18% Similarity=0.173 Sum_probs=123.7
Q ss_pred ceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 6 SLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 6 ~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
+|+.++. ....+.+..|...+.+.+|+|||+.|+..+.++ .|.+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~-------------------------------- 232 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYV-------------------------------- 232 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEE--------------------------------
Confidence 3555542 333455666778899999999999998876432 3444
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
||+.+++.. .+....+...+.+|+|+|+.++ +.+.+| .|++||+.+++. ..+..+.......+|+|+|+.|+
T Consensus 233 ---~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~ 307 (433)
T PRK04922 233 ---QDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIY 307 (433)
T ss_pred ---EECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence 455444332 2222333455789999999775 445555 699999988764 34445555567889999999887
Q ss_pred EEe-CCCe--EEEEeCCC-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEE
Q 042146 159 TSS-YDGL--YRILDAST-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 159 ~~~-~dg~--i~~~d~~~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
.++ .+|. |.++|+.. |++++++..+.++ .|.+||+.+++.. .+.
T Consensus 308 f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---------- 376 (433)
T PRK04922 308 FTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---------- 376 (433)
T ss_pred EEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----------
Confidence 766 3444 66666543 6788877665332 5888898776654 222
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CCCcEEEEeec
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD-NDRTMKIWTQE 260 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d~~i~iw~~~ 260 (262)
+........|+|+|+.|+..+.+ ..+.|.+++++
T Consensus 377 -------------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 377 -------------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred -------------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 21223456899999988777621 12345666553
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=9.7e-13 Score=103.55 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=100.3
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
.++++..++ +.+.+.++......-..+.|+|||+++++++.||.|.++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi------------------------------ 63 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVI------------------------------ 63 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEE------------------------------
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEE------------------------------
Confidence 356777776 456778887654444557899999999999999987776
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecC-------CCCeeeEEEcc
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAH-------SDPVTAIDFNR 152 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~ 152 (262)
|+.+.+.+.+++. ......+++++||++++++. ..+.+.++|.++.+++..+... ...+.++..+|
T Consensus 64 -----D~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 64 -----DLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp -----ETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred -----ECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 5556677777664 34467899999999988765 6889999999998887776432 23566676677
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC---------------------CCccEEEEE-cCCCeEEEEecCCCceee
Q 042146 153 DGTMIVTSSY-DGLYRILDAST---------------------PNGKFILVG-TLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 153 ~~~~l~~~~~-dg~i~~~d~~~---------------------~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 200 (262)
....++.+-. .+.|.+.|... ++++|++++ ..+..|-++|.++++.+.
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 6665555444 36666666443 556655443 344556666665554443
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=7.5e-13 Score=107.47 Aligned_cols=194 Identities=17% Similarity=0.167 Sum_probs=123.2
Q ss_pred ceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCC---CeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 6 SLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE---KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 6 ~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
.|+.++ .....+.+..|...+.+.+|+|||+.|+..+.. ..|.
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~--------------------------------- 229 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVY--------------------------------- 229 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEE---------------------------------
Confidence 444444 233445666788899999999999998887642 3444
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
+||+.+++. ..+..+.+.+...+|+|+|+.|+ +.+.++ .|.+||+.+++. ..+..+........|+|||+.++
T Consensus 230 --~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~ 305 (435)
T PRK05137 230 --LLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIV 305 (435)
T ss_pred --EEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEE
Confidence 555555443 23334455677889999998775 555555 488889887765 44555666677899999999887
Q ss_pred EEeC-CC--eEEEEeCCC-------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 159 TSSY-DG--LYRILDAST-------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 159 ~~~~-dg--~i~~~d~~~-------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
..+. +| .|.++|+.. |+++.|+....+ ..|.+||+..+. ...+.
T Consensus 306 f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt---------- 374 (435)
T PRK05137 306 FESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT---------- 374 (435)
T ss_pred EEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc----------
Confidence 7663 33 577777654 566666655432 246666654332 22221
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC----CcEEEEeec
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND----RTMKIWTQE 260 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d----~~i~iw~~~ 260 (262)
....+....|+|+|+.|+..+.+.. ..+.+.+++
T Consensus 375 -------------~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 375 -------------SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred -------------CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 2224567899999998887652111 245555553
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.60 E-value=8.3e-14 Score=100.82 Aligned_cols=185 Identities=18% Similarity=0.257 Sum_probs=132.9
Q ss_pred cCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 21 GHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 21 ~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
.+..+++++.|+. +-+++.+.|-|-+..|||++.. ..+....++..|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------------------------------~~~~vkTQLIAH 195 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------------------------------VSGTVKTQLIAH 195 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeec--------------------------------cccceeeEEEec
Confidence 4678999999987 6678999999999988877542 022344567889
Q ss_pred CcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEcc-CCCEEEEEeCC-CeEEEEeCCC
Q 042146 100 TNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNR-DGTMIVTSSYD-GLYRILDAST 173 (262)
Q Consensus 100 ~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~~~d~~~ 173 (262)
..+|..++|...+ +.+++.+.||.|+++|+|..+.-..+ .....+...++|++ |.+++++-..| ..|.+.|+|.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 9999999999844 56889999999999999976543333 22345788899988 66778776654 5799999987
Q ss_pred ----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 174 ----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 174 ----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
.....+++++.|..+.+||+...-. +.... .-+.....+.|
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~----~~~~d-------------Pilay~a~~EV 338 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR----ENGED-------------PILAYTAGGEV 338 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc----cCCCC-------------chhhhhcccee
Confidence 3567899999999999999875221 00000 00111156789
Q ss_pred EEEEEcCC-CCeEEEeeecCCCcEEEE
Q 042146 232 ISVASHPA-KNIIASGALDNDRTMKIW 257 (262)
Q Consensus 232 ~~~~~~p~-~~~l~~~~~d~d~~i~iw 257 (262)
+.+.|+|. ...++.+. ++++.+-
T Consensus 339 Nqi~Ws~~~~Dwiai~~---~kkleiL 362 (364)
T KOG0290|consen 339 NQIQWSSSQPDWIAICF---GKKLEIL 362 (364)
T ss_pred eeeeecccCCCEEEEEe---cCeeeEE
Confidence 99999975 55666664 5566553
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.5e-13 Score=103.18 Aligned_cols=182 Identities=19% Similarity=0.264 Sum_probs=135.4
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
..++|..++.. + ..|++|-.+|.+.+|...... +. ..++..+..+ .
T Consensus 104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d------------------------------~h-ss~l~~la~g-~ 149 (412)
T KOG3881|consen 104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGD------------------------------LH-SSKLIKLATG-P 149 (412)
T ss_pred ccccccchhhc-C-CEEEEEecCCcEEEEeccCCc------------------------------cc-cccceeeecC-C
Confidence 34455554442 2 357777788888888654321 11 1222223222 4
Q ss_pred ceEEEEEeCC-CCEEEeecCC--CeEEEEECCCCeeeeeeecCC---------CCeeeEEEccC--CCEEEEEeCCCeEE
Q 042146 102 YVFCINFNPQ-SNRIVSDTFN--ETIRIWDIKTGKCLKVLPAHS---------DPVTAIDFNRD--GTMIVTSSYDGLYR 167 (262)
Q Consensus 102 ~v~~~~~~~~-~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~--~~~l~~~~~dg~i~ 167 (262)
.+..+.-+|. ...+++|+.. ..+.+||++..+.+..-+.-. -.++++.|-|. ...|++++.-+.++
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 4566666664 4456669988 889999999886665443211 13678889886 78999999999999
Q ss_pred EEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeE-EeccCCceeEEEEEEecCCCeeEE
Q 042146 168 ILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKT-YSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 168 ~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
+||.+. |+++++++|..-|.+..||++.++.... +.+
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg--------------------- 288 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG--------------------- 288 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC---------------------
Confidence 999876 8999999999999999999999988876 665
Q ss_pred ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+.|+++..+|.+++|+++| -|..|||+|++.
T Consensus 289 -~tGsirsih~hp~~~~las~G--LDRyvRIhD~kt 321 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCG--LDRYVRIHDIKT 321 (412)
T ss_pred -ccCCcceEEEcCCCceEEeec--cceeEEEeeccc
Confidence 778999999999999999999 789999999875
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=6.9e-14 Score=100.39 Aligned_cols=124 Identities=19% Similarity=0.402 Sum_probs=91.1
Q ss_pred CcCceEEEEEccCCCeEEEe--cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 22 HLRAVSYVKFSHDGRLLTSS--SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
..++|.+++|+|+|+.||+. ..++.|.+||+ + ++.+..+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~-----------------------------------~-~~~i~~~~-- 99 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV-----------------------------------K-GKKIFSFG-- 99 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcC-----------------------------------c-ccEeEeec--
Confidence 34579999999999987654 35567777754 2 34444443
Q ss_pred CcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCc
Q 042146 100 TNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNG 176 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 176 (262)
...++.+.|+|+|+++++++. .|.|.+||.++.+.+.... |. .++.++|+|+|++|+++......
T Consensus 100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~---------- 167 (194)
T PF08662_consen 100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRL---------- 167 (194)
T ss_pred CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccce----------
Confidence 456789999999999998764 4679999999888887764 33 47899999999999998754322
Q ss_pred cEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 177 KFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
..|..++||+.. |+++...
T Consensus 168 ------~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 168 ------RVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ------eccccEEEEEec-CeEeEec
Confidence 235678888874 6665544
No 221
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.2e-13 Score=107.27 Aligned_cols=182 Identities=16% Similarity=0.203 Sum_probs=135.9
Q ss_pred cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc---------ccCCccc---------------------cccceeE
Q 042146 33 HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK---------FTGHEQG---------------------ISDLATI 82 (262)
Q Consensus 33 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------~~~~~~~---------------------v~~~~~i 82 (262)
|-..|+|....||.+++|+....+......+..... +.....+ -...+.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456799999999999999987654322221111000 0000000 0111178
Q ss_pred EEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 83 RLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.+++...++....+. .|.+.|+++.++.+-..|.+++.|+.+..|++...+.+...+.....+.+++.+||+..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 888888887766654 689999999999998999999999999999999999999998888899999999999888877
Q ss_pred eCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC-
Q 042146 161 SYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA- 239 (262)
Q Consensus 161 ~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~- 239 (262)
+ +.|.+||+++++.+..|.+ |.++|++++|-.+
T Consensus 163 s------------------------~~ik~~~~~~kevv~~ftg----------------------h~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 163 S------------------------RQIKVLDIETKEVVITFTG----------------------HGSPVRTLSFTTLI 196 (541)
T ss_pred c------------------------ceEEEEEccCceEEEEecC----------------------CCcceEEEEEEEec
Confidence 6 4699999999999999998 7788888888766
Q ss_pred ----CCeEEEeeecCCCcEEEEeecc
Q 042146 240 ----KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 240 ----~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|.++.++.. .+.-+.+|.+.+
T Consensus 197 ~g~~G~~vLssa~-~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAA-AERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccc-cccceeEEEEEc
Confidence 555554431 456677887654
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9.3e-13 Score=106.50 Aligned_cols=183 Identities=17% Similarity=0.145 Sum_probs=117.3
Q ss_pred ceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146 6 SLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR 83 (262)
Q Consensus 6 ~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~ 83 (262)
.|+.++. ....+.+..+...+.+.+|+|||+.|+..+.++ .- .|.
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~---------------------------------~I~ 223 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKP---------------------------------VVY 223 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCc---------------------------------EEE
Confidence 3555442 333445556788899999999999998876432 10 244
Q ss_pred EEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEE--ECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIW--DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
+||+.+++... +......+...+|+|||+.|+ +.+.+|...+| |+..+. ...+..+........|+|||+.|+..
T Consensus 224 ~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~ 301 (427)
T PRK02889 224 VHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFT 301 (427)
T ss_pred EEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEE
Confidence 55665554322 222334566889999999876 56777765555 555444 44555555566788999999988766
Q ss_pred eC-CCeEEEEeCC--C-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 161 SY-DGLYRILDAS--T-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 161 ~~-dg~i~~~d~~--~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
+. +|...+|.+. . |++++++..+.++ .|.+||+.+++... +..
T Consensus 302 s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~----------- 369 (427)
T PRK02889 302 SDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD----------- 369 (427)
T ss_pred ecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-----------
Confidence 53 4555555432 2 7888887766544 58889988776432 221
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
........|+|+++.|+.++
T Consensus 370 ------------~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 370 ------------TTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred ------------CCCccCceECCCCCEEEEEE
Confidence 11235678999999888877
No 223
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=3.9e-12 Score=99.80 Aligned_cols=162 Identities=8% Similarity=0.144 Sum_probs=107.5
Q ss_pred eEEEEecCC-Ccc--ceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCC-Ce---eeeeeecCCCCeeeEEEcc
Q 042146 81 TIRLWDVPT-ATS--LKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKT-GK---CLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 81 ~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~ 152 (262)
.|.+|++.. +.. ..... .......++++|+++++++++ .++.|.+|++.+ +. .+..+. +......++++|
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred cEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 788888863 322 11221 233567899999999888765 478999999964 22 222232 234467789999
Q ss_pred CCCEEEEEe-CCCeEEEEeCCC--------------------------CCccEEEEEcC-CCeEEEEecCC--Cc--eee
Q 042146 153 DGTMIVTSS-YDGLYRILDAST--------------------------PNGKFILVGTL-DNTLRLWNYST--RK--ILK 200 (262)
Q Consensus 153 ~~~~l~~~~-~dg~i~~~d~~~--------------------------~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~ 200 (262)
+++++++++ .++.|.+||+.. |+++++++++. ++.|.+|++.. ++ .+.
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 999886555 669999998742 67788888776 89999999973 32 223
Q ss_pred EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+....... .+......+.++|++++|+++.. .++.|.+|++++
T Consensus 216 ~~~~~p~~~----------------~~~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~ 259 (330)
T PRK11028 216 TLDMMPADF----------------SDTRWAADIHITPDGRHLYACDR-TASLISVFSVSE 259 (330)
T ss_pred EEecCCCcC----------------CCCccceeEEECCCCCEEEEecC-CCCeEEEEEEeC
Confidence 322110000 01223456899999999999863 378999999853
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.5e-13 Score=109.09 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=108.4
Q ss_pred eEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146 26 VSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
....+|+|||+.|+.++ .+|.+.|| +||+.++. ...+..+...+.
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy---------------------------------~~d~~~~~-~~~lt~~~~~~~ 295 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIY---------------------------------VMGANGGT-PSQLTSGAGNNT 295 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEE---------------------------------EEECCCCC-eEeeccCCCCcC
Confidence 44689999999888764 67776665 34554443 334445566678
Q ss_pred EEEEeCCCCEEEeec-CCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------
Q 042146 105 CINFNPQSNRIVSDT-FNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~-~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------- 173 (262)
...|+|+|+.++..+ .+|...||++... .....+ .+.. ....|+|+|+.++..+.++ +.+||+.+
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~ 371 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST 371 (429)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC
Confidence 899999999876554 5677888876432 222222 3333 4678999999998887765 44588654
Q ss_pred ---------CCccEEEEEcCCCeEEEEec--CCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146 174 ---------PNGKFILVGTLDNTLRLWNY--STRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239 (262)
Q Consensus 174 ---------~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 239 (262)
|++++|+.++.++...+|.+ .+|+.+..+.. |.+.+...+|+|-
T Consensus 372 ~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~----------------------~~g~~~~p~wsp~ 426 (429)
T PRK01742 372 FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG----------------------SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC----------------------CCCCCCCcccCCC
Confidence 78999999998888887775 35777777765 6677888899884
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-12 Score=96.42 Aligned_cols=224 Identities=18% Similarity=0.315 Sum_probs=147.7
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc--------------------------
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------------------- 76 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------------- 76 (262)
..-|.++.|...|.+||+|..+|.|.++.-+..... .......++.|....
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 456899999999999999999999999976543220 000111111111111
Q ss_pred ---ccceeEEEEecCCCccce-----------------------------------ec-ccCCcceEEEEEeCCCCEEEe
Q 042146 77 ---SDLATIRLWDVPTATSLK-----------------------------------TL-IGHTNYVFCINFNPQSNRIVS 117 (262)
Q Consensus 77 ---~~~~~i~v~d~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~l~~ 117 (262)
....+|++|.+....... .+ ..|..-|++|.++.|+..+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 112288999875321110 00 257778999999999999988
Q ss_pred ecCCCeEEEEECCCC-ee--eeeeecCC-----CCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC---------------
Q 042146 118 DTFNETIRIWDIKTG-KC--LKVLPAHS-----DPVTAIDFNR-DGTMIVTSSYDGLYRILDAST--------------- 173 (262)
Q Consensus 118 ~~~dg~i~vwd~~~~-~~--~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--------------- 173 (262)
+. |=.|.+|+++-. +. +.-++.++ .-|++..|+| .-++|+-++..|+|++.|+|.
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 75 778999998632 21 22233333 4589999999 456888889999999999995
Q ss_pred ---------------------CCccEEEEEcCCCeEEEEec-CCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 174 ---------------------PNGKFILVGTLDNTLRLWNY-STRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 174 ---------------------~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
++|+|+++-+. -+|++||+ ...+++.+++.|.....-+...+..+ .--.-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD-------~IfdK 332 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND-------AIFDK 332 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc-------chhhe
Confidence 67888887653 57999999 45778888876543211111100000 00012
Q ss_pred EEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 232 ISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.-++|+.++..++||+ ....+++++..
T Consensus 333 Fec~~sg~~~~v~TGs--y~n~frvf~~~ 359 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGS--YNNVFRVFNLA 359 (433)
T ss_pred eEEEEcCCcceEeccc--ccceEEEecCC
Confidence 4578999999999999 88999999843
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=9.6e-14 Score=102.25 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=126.5
Q ss_pred EEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CCCCccccCCcccccc----ceeEEEEecCCCccceecccCCc
Q 042146 29 VKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PSPLQKFTGHEQGISD----LATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 29 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~v~~----~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
..|||+|+++|+.+.- .+.|-|.++.+...... ......+......+.+ ...|.+|++...+.-..+....+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 6799999999999876 66677665432211000 0000111111111111 12799999999888888888889
Q ss_pred ceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE-------------
Q 042146 102 YVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR------------- 167 (262)
Q Consensus 102 ~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~------------- 167 (262)
++.+++|+|+|+. |.+...+-.|.+|.+.+.+.... +..+..+..++|+|+|++.+.++.-...-
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence 9999999999965 55666788999999998776544 33355678999999999988887542211
Q ss_pred -EEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146 168 -ILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 168 -~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 246 (262)
-+++.+-|-.-+=-+-.+..+.+||-.---.+..+. ..-.+..++|+|.+++|+.|
T Consensus 172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-----------------------~~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-----------------------RGLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred HhcCCCcccccCceECCCCcEEEEecchhhheeeeee-----------------------eccceeEEEeccccceEEee
Confidence 112222111111111222334466643222222221 34578899999999999999
Q ss_pred eecCCCcEEE
Q 042146 247 ALDNDRTMKI 256 (262)
Q Consensus 247 ~~d~d~~i~i 256 (262)
+ .|+.+|+
T Consensus 229 s--yD~~lrv 236 (447)
T KOG4497|consen 229 S--YDQMLRV 236 (447)
T ss_pred c--cchhhhh
Confidence 9 8999886
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5.5e-13 Score=100.53 Aligned_cols=104 Identities=17% Similarity=0.301 Sum_probs=89.5
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------Ceeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------GKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
+.+.+|.+.|+++.|+.++++|++|+.|-.+++|++.. .+++..... |.+.|.|++|....+.+++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999853 355555433 55899999999988999999999999
Q ss_pred EEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCc
Q 042146 167 RILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRK 197 (262)
Q Consensus 167 ~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~ 197 (262)
.+-|+.+ |..+.|++.+.++.|.+||.+..+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 9999877 667899999999999999998644
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=8.7e-13 Score=99.11 Aligned_cols=101 Identities=19% Similarity=0.332 Sum_probs=89.2
Q ss_pred ceEEEEEeCC--CCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146 102 YVFCINFNPQ--SNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----- 173 (262)
Q Consensus 102 ~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 173 (262)
.++.+.|-+. ...|++++.-+.+++||.+.+ +++..+.....+++++...|.++.+++|..-|.+..||++.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence 4567888876 788999999999999999865 67888887889999999999999999999999999999987
Q ss_pred ----------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 174 ----------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 174 ----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
|..+++++++-|..+||+|+.+.+++...
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 77789999999999999999987666543
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=3.8e-13 Score=114.17 Aligned_cols=150 Identities=15% Similarity=0.257 Sum_probs=121.5
Q ss_pred CCccceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCC-------eeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 89 TATSLKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTG-------KCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.|..+..+..|...+..++.++. +.++++|+.||+|++||++.- +...++..-...+.++...+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 35566777889999999998874 499999999999999998642 2223333346789999999999999999
Q ss_pred eCCCeEEEEeCCC------------------------------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 161 SYDGLYRILDAST------------------------------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 161 ~~dg~i~~~d~~~------------------------------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
+.||.|.+.++.. ..+ ..++.++..+.|..||+++......++...
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~--- 1193 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL--- 1193 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc---
Confidence 9999999998765 122 378888888999999999877776665422
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
..+.|++++.+|.+..+++|. .-|.+-+||+.
T Consensus 1194 -----------------~hG~vTSi~idp~~~WlviGt--s~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1194 -----------------RHGLVTSIVIDPWCNWLVIGT--SRGQLVLWDLR 1225 (1431)
T ss_pred -----------------cccceeEEEecCCceEEEEec--CCceEEEEEee
Confidence 457899999999999999999 89999999985
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=6.3e-13 Score=110.94 Aligned_cols=190 Identities=21% Similarity=0.274 Sum_probs=136.3
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccc--------cCCcc---ccccceeEEEEecCCCcc
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF--------TGHEQ---GISDLATIRLWDVPTATS 92 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~~~~~---~v~~~~~i~v~d~~~~~~ 92 (262)
..|....+..+...++.+..++.+.+||.................+ ....- .-...+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344455556677889999999999999876544332222221111 11111 112233899999875555
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee-eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
...+.+|.+.|.++.++-+|+++++.|.|.++++|++.+++... ..-+|+..+..+.|.|+ .+++++.|-+.+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr---- 241 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR---- 241 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE----
Confidence 55688999999999999999999999999999999999987765 55689999999999987 666666655554
Q ss_pred CCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146 172 STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND 251 (262)
Q Consensus 172 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d 251 (262)
+|+.. ++.+..+..| -.+.|..++..+....++|++ .|
T Consensus 242 ------------------vW~~~-~~~l~~y~~h---------------------~g~~iw~~~~~~~~~~~vT~g--~D 279 (967)
T KOG0974|consen 242 ------------------VWGVN-GTQLEVYDEH---------------------SGKGIWKIAVPIGVIIKVTGG--ND 279 (967)
T ss_pred ------------------EEecc-cceehhhhhh---------------------hhcceeEEEEcCCceEEEeec--cC
Confidence 45332 3333455542 345789999999999999999 99
Q ss_pred CcEEEEeecc
Q 042146 252 RTMKIWTQEK 261 (262)
Q Consensus 252 ~~i~iw~~~~ 261 (262)
+.+++|++..
T Consensus 280 s~lk~~~l~~ 289 (967)
T KOG0974|consen 280 STLKLWDLNG 289 (967)
T ss_pred cchhhhhhhc
Confidence 9999999753
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=4.4e-12 Score=93.65 Aligned_cols=222 Identities=16% Similarity=0.281 Sum_probs=132.9
Q ss_pred CCceeeecccc--cceecccCcCceEEEEEccCCCe-EEEecCCCeEEEeecCCCCCCCCCCCCC-CccccCCcccc-cc
Q 042146 4 DRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRL-LTSSSAEKTLLTYSLSSISNFDSTPPSP-LQKFTGHEQGI-SD 78 (262)
Q Consensus 4 d~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v-~~ 78 (262)
|+.+..|.-.+ -.-.++.-..++.++.|||||+. |.+..-|-.|.+|.+.+.......-++. ..-+..+..+- ..
T Consensus 70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceee
Confidence 44555554332 23345566788999999999965 5566678899999987643322111111 11111111110 00
Q ss_pred ce-------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146 79 LA-------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151 (262)
Q Consensus 79 ~~-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 151 (262)
+. .+.+..-.....++.++-..-..+.+.|+|||+.+++ ||---.-.+..+. -.-++..++|+
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~ws 219 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWS 219 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEec
Confidence 00 1111111122233334444455678889998876654 5422111122221 23568899999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC----------------------------------------------------------
Q 042146 152 RDGTMIVTSSYDGLYRILDAST---------------------------------------------------------- 173 (262)
Q Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~---------------------------------------------------------- 173 (262)
|.++.|++|+.|+.+++.+--+
T Consensus 220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 9999999999999998876332
Q ss_pred ----------------------------CCccEEEEEcCC--CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee
Q 042146 174 ----------------------------PNGKFILVGTLD--NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY 223 (262)
Q Consensus 174 ----------------------------~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (262)
+|..|+++-... ..+-+||++..++-..+.
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-------------------- 359 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-------------------- 359 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--------------------
Confidence 355566555433 467778877665554443
Q ss_pred EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 224 IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 224 ~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
...+|....|+|....|+.+. ....+++|.+.
T Consensus 360 ---Qk~piraf~WdP~~prL~vct--g~srLY~W~ps 391 (447)
T KOG4497|consen 360 ---QKHPIRAFEWDPGRPRLVVCT--GKSRLYFWAPS 391 (447)
T ss_pred ---hccceeEEEeCCCCceEEEEc--CCceEEEEcCC
Confidence 567899999999999888877 56778888764
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=7.7e-11 Score=88.20 Aligned_cols=163 Identities=14% Similarity=0.198 Sum_probs=104.8
Q ss_pred CCCceeeecc-cccceecc-cCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCC----CCCC--CCccccCCc
Q 042146 3 SDRSLESFRP-YTLTQTLN-GHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDS----TPPS--PLQKFTGHE 73 (262)
Q Consensus 3 ~d~~i~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~--~~~~~~~~~ 73 (262)
.|.++++|+. .+....++ ..+..|+|++|-|.+ ..|+.|+. +-|.+|..+....... .... .+...++|
T Consensus 118 nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh- 195 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH- 195 (445)
T ss_pred cCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-
Confidence 4677888863 34333443 235679999999964 46777765 6689998765322111 0111 11112222
Q ss_pred cccccce----------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee
Q 042146 74 QGISDLA----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV 137 (262)
Q Consensus 74 ~~v~~~~----------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 137 (262)
..|..+. .|.+||..++..+.......+.++-+.|+||+.+|+++.-|+..++|+.........
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence 2222222 899999998877655544567799999999999999999999999996543322222
Q ss_pred eecCCCCeeeEEEccCCCEE-EEEeCCCeEE
Q 042146 138 LPAHSDPVTAIDFNRDGTMI-VTSSYDGLYR 167 (262)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~ 167 (262)
.....+.|...+|+|.|+.| ++++..-.++
T Consensus 276 w~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 276 WILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 22345689999999999854 4555544444
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=2.9e-11 Score=98.05 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=116.8
Q ss_pred ceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146 6 SLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR 83 (262)
Q Consensus 6 ~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~ 83 (262)
.|+.++. ....+.+..+...+...+|+|+|++|+.++.++ .- .|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~---------------------------------~i~ 217 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKP---------------------------------EIY 217 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCc---------------------------------EEE
Confidence 3444442 233455556777889999999999998876432 10 244
Q ss_pred EEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
+||+.+++... +..+...+.+++|+|+++.|+ +.+.++ .|++||+.+++.. .+..+........|+|+++.|+..
T Consensus 218 v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~ 295 (417)
T TIGR02800 218 VQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFT 295 (417)
T ss_pred EEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEE
Confidence 55555543322 223445566789999998775 444444 5899999877543 344455555678999999988766
Q ss_pred eC-CC--eEEEEeCCC-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 161 SY-DG--LYRILDAST-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 161 ~~-dg--~i~~~d~~~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
+. ++ .|.++|+.. +++++++.++.++ .|.+||+.++... .+..
T Consensus 296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~----------- 363 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD----------- 363 (417)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-----------
Confidence 54 33 577777654 6778887777665 7888888765432 2221
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
........|+|+++.|+..+
T Consensus 364 ------------~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 364 ------------TGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred ------------CCCCCCceECCCCCEEEEEE
Confidence 11223457999999888877
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=1.3e-11 Score=103.25 Aligned_cols=131 Identities=25% Similarity=0.381 Sum_probs=106.3
Q ss_pred Cceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146 5 RSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI 82 (262)
Q Consensus 5 ~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i 82 (262)
+.|..|++.. .-..+.+|.+.|.++.++.||+++++.|+|+++++|++++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s---------------------------- 206 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS---------------------------- 206 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc----------------------------
Confidence 3455555331 2225789999999999999999999999999999997654
Q ss_pred EEEecCCCccc-eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-CCeeeEEEccCCCEEEEE
Q 042146 83 RLWDVPTATSL-KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-DPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 83 ~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 160 (262)
.+.. ...-+|.+.|..+.++|+ .+++++.|.+.++|+.+ +..+..+..|. ..+..++..++....+++
T Consensus 207 -------~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 207 -------REVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred -------ccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEee
Confidence 2222 245679999999999988 89999999999999755 45555777775 479999999999999999
Q ss_pred eCCCeEEEEeCCC
Q 042146 161 SYDGLYRILDAST 173 (262)
Q Consensus 161 ~~dg~i~~~d~~~ 173 (262)
+.|+.+++||+..
T Consensus 277 g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 277 GNDSTLKLWDLNG 289 (967)
T ss_pred ccCcchhhhhhhc
Confidence 9999999999765
No 235
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=2.3e-14 Score=116.99 Aligned_cols=118 Identities=28% Similarity=0.611 Sum_probs=103.6
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
++.+.+|...|.|..|...|.++++|+.|..++||..+++.++..+.+|.+.|+.++.+.+..+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~---------------- 246 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTM---------------- 246 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhh----------------
Confidence 3456789999999999999999999999999999999999999999999999999998865444
Q ss_pred CCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252 (262)
Q Consensus 173 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~ 252 (262)
+++++.|..|++|.+.++.++..+.+ |.+.|++++|+|-. +.+ .||
T Consensus 247 ------iaaaS~D~vIrvWrl~~~~pvsvLrg----------------------htgavtaiafsP~~----sss--~dg 292 (1113)
T KOG0644|consen 247 ------IAAASNDKVIRVWRLPDGAPVSVLRG----------------------HTGAVTAIAFSPRA----SSS--DDG 292 (1113)
T ss_pred ------hhhcccCceEEEEecCCCchHHHHhc----------------------cccceeeeccCccc----cCC--CCC
Confidence 45556677889999999999999988 99999999999966 555 799
Q ss_pred cEEEEeec
Q 042146 253 TMKIWTQE 260 (262)
Q Consensus 253 ~i~iw~~~ 260 (262)
++++||..
T Consensus 293 t~~~wd~r 300 (1113)
T KOG0644|consen 293 TCRIWDAR 300 (1113)
T ss_pred ceEecccc
Confidence 99999975
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3.2e-11 Score=98.00 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=107.6
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.++|.. +.....+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+.|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 68888874 4445556667888999999999998877653 468999999888653 344566677889999999876
Q ss_pred E-EEeCCCe--EEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146 158 V-TSSYDGL--YRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~-~~~~dg~--i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+ +.+.++. |.+||+.. |+++.|+..+. +| .|+++|+..++.. .+..
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-------- 331 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-------- 331 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec--------
Confidence 5 5555555 77778654 77887776653 33 5777887655443 3322
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC-CCcEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN-DRTMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-d~~i~iw~~~ 260 (262)
+...+....|+|+|+.|+..+.+. +..|.+|++.
T Consensus 332 --------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 332 --------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred --------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 333456678999999998776211 1356777763
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4.1e-11 Score=96.96 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=104.2
Q ss_pred cCceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 23 LRAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
.+.+...+|+|||+.|+.. +.+|.. .|++||+.+++... +..+..
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~---------------------------------~I~~~d~~tg~~~~-lt~~~~ 287 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSL---------------------------------NLYVMDLASGQIRQ-VTDGRS 287 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCc---------------------------------EEEEEECCCCCEEE-ccCCCC
Confidence 3445568999999988765 444432 23455665554332 333344
Q ss_pred ceEEEEEeCCCCEEEeecCC-C--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC---CeEEEEeCCC--
Q 042146 102 YVFCINFNPQSNRIVSDTFN-E--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD---GLYRILDAST-- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~-- 173 (262)
.+....|+|+|+.|+..+.+ + .|.++|+.+++. ..+..+........|+|+|+.++..+.+ ..|.+||+..
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 57788999999988766654 3 455567766654 3333344456788999999988876643 3588888764
Q ss_pred ----------------CCccEEEEEcCCCe---EEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146 174 ----------------PNGKFILVGTLDNT---LRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234 (262)
Q Consensus 174 ----------------~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 234 (262)
||+++|+.++.++. +.++++ +|+....+.. |.+.+...
T Consensus 367 ~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~----------------------~~~~~~~p 423 (429)
T PRK03629 367 VQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA----------------------TDGQVKFP 423 (429)
T ss_pred eEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc----------------------CCCCcCCc
Confidence 78888888877653 666676 3555566655 66677788
Q ss_pred EEcC
Q 042146 235 ASHP 238 (262)
Q Consensus 235 ~~~p 238 (262)
+|+|
T Consensus 424 ~Wsp 427 (429)
T PRK03629 424 AWSP 427 (429)
T ss_pred ccCC
Confidence 8887
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.3e-10 Score=94.47 Aligned_cols=184 Identities=12% Similarity=0.133 Sum_probs=113.4
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
.+.+..+...+....|+|||+.|+..+.++ .- .|.+|++.+++...
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~---------------------------------~l~~~~l~~g~~~~ 237 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRP---------------------------------RIFVQNLDTGRREQ 237 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCC---------------------------------EEEEEECCCCCEEE
Confidence 344556777899999999999988765432 11 24455555554322
Q ss_pred ecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC--eEEE
Q 042146 95 TLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG--LYRI 168 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~ 168 (262)
+....+.+....|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+........|+|+|+.++..+. +| .|.+
T Consensus 238 -l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 238 -ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred -ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 222233455689999999876 444454 6888999877643 44445556677899999997766553 33 5666
Q ss_pred EeCCC-------------------CCccEEEEEcCC-C--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 169 LDAST-------------------PNGKFILVGTLD-N--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 169 ~d~~~-------------------~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
+|+.. |++++++..+.+ + .|.++|+.+++.. .+..
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~---------------------- 372 (430)
T PRK00178 316 VNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD---------------------- 372 (430)
T ss_pred EECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC----------------------
Confidence 67543 566766665432 2 4667777766532 2211
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCc--EEEEee
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRT--MKIWTQ 259 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~--i~iw~~ 259 (262)
........|+|+|+.++.++. .++. |.+.++
T Consensus 373 -~~~~~~p~~spdg~~i~~~~~-~~g~~~l~~~~~ 405 (430)
T PRK00178 373 -TSLDESPSVAPNGTMLIYATR-QQGRGVLMLVSI 405 (430)
T ss_pred -CCCCCCceECCCCCEEEEEEe-cCCceEEEEEEC
Confidence 111124579999998887763 2333 444444
No 239
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.43 E-value=9.6e-13 Score=94.00 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=105.9
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCC-CCcc--------ccCCccccccceeEE
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPS-PLQK--------FTGHEQGISDLATIR 83 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~-~~~~--------~~~~~~~v~~~~~i~ 83 (262)
+.+..|+++-.+-+.+-.++.++++..||.+.+.+.+........ ... ...+ ..+....+......+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 344445555445555556778999999999999998762211110 000 0011 112223334444677
Q ss_pred EEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe-eeeeeecCCCCeeeEEEcc-CCCEEEEE
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNR-DGTMIVTS 160 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 160 (262)
.|+++..+.+..-+.-...|.+++-+| ...++++|+.||.+-+||.+... +...+..|+.+++.+-|+| ++..|+++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 777765443322222234499999999 56678899999999999998764 3455688999999999999 78899999
Q ss_pred eCCCeEEEEeCCC
Q 042146 161 SYDGLYRILDAST 173 (262)
Q Consensus 161 ~~dg~i~~~d~~~ 173 (262)
+.||.+-.||...
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999774
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.4e-10 Score=90.03 Aligned_cols=97 Identities=16% Similarity=0.392 Sum_probs=78.0
Q ss_pred CCCCeeeEEEccCCCEEEEE--eCCCeEEEEeCCC-----------------CCccEEEEEcC---CCeEEEEecCCCce
Q 042146 141 HSDPVTAIDFNRDGTMIVTS--SYDGLYRILDAST-----------------PNGKFILVGTL---DNTLRLWNYSTRKI 198 (262)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~--~~dg~i~~~d~~~-----------------~~~~~l~~~~~---dg~i~i~d~~~~~~ 198 (262)
..++|.++.|+|+++.|+++ -.-..+.+||++. |.|++++.++- .|.|.|||+.+.++
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 47899999999999877665 4567889999886 78898888764 48999999999988
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec----CCCcEEEEeecc
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD----NDRTMKIWTQEK 261 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~d~~i~iw~~~~ 261 (262)
+..+.. ..-+-+.|+|||.+++|+.+- -|+.++||++..
T Consensus 349 i~~~~a------------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 349 IAKFKA------------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccccc------------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 888864 234567899999999999731 278899999753
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=1.1e-11 Score=90.17 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=87.9
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEE
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFC 105 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~ 105 (262)
-.++.|++.+..++++-.+|.+.+-+... ..-+.++.++.|.-++..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~---------------------------------~~le~vq~wk~He~E~Wt 170 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE---------------------------------MVLEKVQTWKVHEFEAWT 170 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce---------------------------------eeeeecccccccceeeee
Confidence 45677777777788877777766332110 011334467889999999
Q ss_pred EEEeC-CCCEEEeecCCCeEEEEECC-CCeeeee-eecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q 042146 106 INFNP-QSNRIVSDTFNETIRIWDIK-TGKCLKV-LPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 106 ~~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~ 173 (262)
.+|+. +.+++++|+.|+.+..||+| .++.+.. .+.|...|.++.-+| .+.++++|+.|-.|++||.|+
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 99986 66789999999999999999 4444443 466899999999887 678999999999999999997
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.6e-11 Score=97.63 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=104.9
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.+||.. +...+.+..+...+.+.+|+|+++.|+..+.+ ..|.+||+.+++... +....+...+.+|+|+|+.+
T Consensus 185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 68889975 44445555677789999999999998876633 469999998876533 33344555688999999876
Q ss_pred E-EEeCCC--eEEEEeCCC-------------------CCccEEEEEcC-CCe--EEEEecCCCceeeEEeccCCceeEE
Q 042146 158 V-TSSYDG--LYRILDAST-------------------PNGKFILVGTL-DNT--LRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~-~~~~dg--~i~~~d~~~-------------------~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+ +.+.+| .|++||+.+ ++++.|+..+. +|. |+++|+.+++... +..
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-------- 333 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-------- 333 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec--------
Confidence 5 445555 588898765 67777776653 343 6666766554322 211
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC--cEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR--TMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~--~i~iw~~~ 260 (262)
+.......+|+|+|+.|+..+. .++ .|.+|++.
T Consensus 334 --------------~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~ 368 (433)
T PRK04922 334 --------------QGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLS 368 (433)
T ss_pred --------------CCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECC
Confidence 2223446899999999987752 222 58888875
No 243
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.8e-13 Score=107.65 Aligned_cols=159 Identities=16% Similarity=0.279 Sum_probs=120.6
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
+..+.||+..|+.++--.+.+-+++++.|++|++|.+..... .+.+..+..+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------------------~~~tsaCQfT 779 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------------------EIGTSACQFT 779 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------------------ccccceeeeE
Confidence 456789999999999888889999999999999998754111 1123446678
Q ss_pred cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--CCCCeeeEEEcc--CCCEEEE-EeCCCeEEEEe
Q 042146 96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNR--DGTMIVT-SSYDGLYRILD 170 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~-~~~dg~i~~~d 170 (262)
+..|+.+|..+.|-.+-++++++ ||-|.+||.--++++..+.. ..+.+..+..-| +...++. |+...+|+++|
T Consensus 780 Y~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 780 YQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred hhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeee
Confidence 88999999999999888877765 78999999877776654321 122333333334 3344444 47889999999
Q ss_pred CCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 171 AST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 171 ~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.|+ +.|+.++++-.+|+|.+.|.++|+.+...+.
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 887 6788999999999999999999998887654
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=4.8e-11 Score=96.65 Aligned_cols=154 Identities=13% Similarity=0.211 Sum_probs=100.6
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|
T Consensus 177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 57777763 44444555677789999999999998876532 369999999886543 33344566789999999987
Q ss_pred E-EEeCCCeEEEEeC--CC-------------------CCccEEEEEcC-CCeEEEEec--CCCceeeEEeccCCceeEE
Q 042146 158 V-TSSYDGLYRILDA--ST-------------------PNGKFILVGTL-DNTLRLWNY--STRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~-~~~~dg~i~~~d~--~~-------------------~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~ 212 (262)
+ +.+.+|...+|.+ .. |+++.|+..+. +|...||.+ .+++... +..
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~-------- 325 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF-------- 325 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec--------
Confidence 6 4567777666643 32 67777665543 345555543 3333221 111
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC---cEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR---TMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~~ 261 (262)
........+|+|+|+.|+..+ .++ .|.+|++..
T Consensus 326 --------------~g~~~~~~~~SpDG~~Ia~~s--~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 326 --------------TGSYNTSPRISPDGKLLAYIS--RVGGAFKLYVQDLAT 361 (427)
T ss_pred --------------CCCCcCceEECCCCCEEEEEE--ccCCcEEEEEEECCC
Confidence 222234578999999998776 333 588998753
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.7e-10 Score=91.96 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=109.3
Q ss_pred eecccCcCceEEEEEccCCCeE---EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLL---TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL 93 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l---~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~ 93 (262)
+.+......+.+=+|+|||+.+ ++...+|.-. |.+.++..++..
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~---------------------------------I~~~~l~~g~~~ 224 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPK---------------------------------IFLGSLENPAGK 224 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCce---------------------------------EEEEECCCCCce
Confidence 3344455666778999998752 2444444322 345566555432
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecC-----CCeEEEEECCCC---eeeeeeecCCCCeeeEEEccCCCEEEEEe-CCC
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTF-----NETIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDG 164 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 164 (262)
. +....+.....+|+|||+.|+..+. +..+..|++..+ +...............+|+|||+.|+..+ .+|
T Consensus 225 ~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 225 K-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred E-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 2 2223344556899999998875442 223445777642 33333322233456789999999777665 466
Q ss_pred eEEEE--eCCC---------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 165 LYRIL--DAST---------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 165 ~i~~~--d~~~---------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
...+| ++.. |+++.|+..+.+ ..|.+||+.+++......
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--------------- 368 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--------------- 368 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC---------------
Confidence 54444 4321 778877765433 368888888776543222
Q ss_pred CCCeeEEccccceEEEEEcCCCCeEEEeee-cCCCcEEEEeec
Q 042146 219 TNGKYIVSHRDPVISVASHPAKNIIASGAL-DNDRTMKIWTQE 260 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~d~~i~iw~~~ 260 (262)
....+....|+|+|+.|+..+. +....|.++++.
T Consensus 369 --------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 369 --------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred --------CCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 2234567899999998775441 123467777764
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.40 E-value=1.4e-10 Score=89.86 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=87.9
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
+|.+.|.-..+..+++-++.|..||- .+-++|.++++ +..+...-
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD----------------------------------~l~iyd~~~~e-~kr~e~~l 401 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGD----------------------------------KLGIYDKDGGE-VKRIEKDL 401 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCc----------------------------------eEEEEecCCce-EEEeeCCc
Confidence 45556666666666666666666661 24445555444 34445566
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC----eEEEEeCCC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG----LYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~d~~~ 173 (262)
+.|.+++.+|+|++++++.....|-+.|+.++.....-+...+-|+.++|||++++++-+--+| .|+++|+..
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 8899999999999999999999999999999986554444567899999999999999887665 688998776
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.5e-12 Score=114.32 Aligned_cols=172 Identities=13% Similarity=0.281 Sum_probs=118.3
Q ss_pred ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI 97 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~ 97 (262)
.++.|-..|.+|.-+|...+.+||+.||.+++|.-.. +. .|..|+. .
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--------~~----------------~v~~~rt---------~ 2249 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--------GQ----------------QVVCFRT---------A 2249 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccC--------CC----------------eEEEeec---------c
Confidence 3445667799999999999999999999999993211 11 2333332 1
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe---CCCeEEEEeCCC-
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS---YDGLYRILDAST- 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~- 173 (262)
+. ..|+.+.|+.+|+.+..+..||.+.+|... .++....+.|+....+++|-. ..+++++ .++.+.+||...
T Consensus 2250 g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2250 GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred Cc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 22 678889999999999999999999999876 555555666776666666653 4455543 356677777543
Q ss_pred --------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146 174 --------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233 (262)
Q Consensus 174 --------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 233 (262)
|..+.|++|+.+|.|++||++..+++.+++.
T Consensus 2326 ~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------------------------- 2376 (2439)
T KOG1064|consen 2326 PMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------------------------- 2376 (2439)
T ss_pred cccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------------------------
Confidence 5666777777777777777776666655541
Q ss_pred EEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 234 VASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
++ ...++++++ ..|.|+||++.
T Consensus 2377 --~~-~~~~f~~~s--s~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGS--SEGNIKIWRLS 2398 (2439)
T ss_pred --hh-hhheeeccC--cccceEEEEcc
Confidence 33 456666666 66777777664
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=2.1e-10 Score=90.46 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=100.8
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.|.+.|..+.+.+..+......-..+.++||++++++++.||.|.++|+.+++.+.+++... ....+++++||++++++
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEE
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEE
Confidence 35555777778888877655544567899999999999999999999999999999987644 46889999999988877
Q ss_pred e-CCCeEEEEeCCC---------------------------CCcc-EEEEEcCCCeEEEEecCCCceeeEEeccCCceeE
Q 042146 161 S-YDGLYRILDAST---------------------------PNGK-FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211 (262)
Q Consensus 161 ~-~dg~i~~~d~~~---------------------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 211 (262)
. ..+.+.++|..+ +..+ ++++--+.+.|.+.|....+.+..-.
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-------- 167 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-------- 167 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--------
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee--------
Confidence 5 689999999876 1222 22222223444444443332211100
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...........|+|++++++.+.. ....|-++|.++
T Consensus 168 -------------i~~g~~~~D~~~dpdgry~~va~~-~sn~i~viD~~~ 203 (369)
T PF02239_consen 168 -------------IKVGRFPHDGGFDPDGRYFLVAAN-GSNKIAVIDTKT 203 (369)
T ss_dssp -------------EE--TTEEEEEE-TTSSEEEEEEG-GGTEEEEEETTT
T ss_pred -------------ecccccccccccCcccceeeeccc-ccceeEEEeecc
Confidence 003345668899999998877653 356787887654
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.4e-11 Score=97.05 Aligned_cols=202 Identities=10% Similarity=0.140 Sum_probs=141.2
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-------CCCCCCCCccccCCccccccce---------------
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-------DSTPPSPLQKFTGHEQGISDLA--------------- 80 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~--------------- 80 (262)
.....|++|+.+..|+|.|+.||.+++-.+.+...- ........+.+.+|...|..+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456889999999999999999999999998763211 1122233456777877764333
Q ss_pred eEEEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
-|.||=+..+.....+. ..++.|.+++|+.+|..++....||.|.+=.+..++ +.--.-.......+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHH
Confidence 67778777776554442 356789999999999999999999999988776433 322221223356788999999988
Q ss_pred EEeCCCeEEEEeCCC---------------------------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146 159 TSSYDGLYRILDAST---------------------------------------PNGKFILVGTLDNTLRLWNYSTRKIL 199 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~---------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~ 199 (262)
.+-..|.+.+||... |+.+.|+++-.+|.++|-.-.+..
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~-- 250 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP-- 250 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC--
Confidence 888899999999665 455566666655555553322211
Q ss_pred eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee
Q 042146 200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL 248 (262)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 248 (262)
...+..-.-.+....|+|+|..||.+|.
T Consensus 251 ---------------------~Pvv~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 251 ---------------------EPVVVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred ---------------------CCeEEecccEeecceecCCCcEEEEccC
Confidence 1112224467888999999999999983
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.7e-10 Score=91.89 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=108.7
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCC-CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAE-KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
+.+..+...+.+..|+|||+.|+..+.+ +.- .|.++|+.+++...
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~---------------------------------~L~~~dl~tg~~~~- 256 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKA---------------------------------EIFVQDIYTQVREK- 256 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCc---------------------------------EEEEEECCCCCeEE-
Confidence 3444556778899999999988876532 222 23455655544321
Q ss_pred cccCCcceEEEEEeCCCCEEEe-ecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC--eEEEE
Q 042146 96 LIGHTNYVFCINFNPQSNRIVS-DTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG--LYRIL 169 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~ 169 (262)
+..........+|+|||+.|+. .+.+| .|+++|+.+++.. .+..+.......+|+||++.++..+. ++ .|.++
T Consensus 257 lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 257 VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 1111223346799999997764 45566 4888898877643 44445556678899999998766553 33 46666
Q ss_pred eCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 170 DAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 170 d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
|+.. |++++|+..+. ++ .|.++|+.+++... +.. .
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~----------------------~ 392 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS----------------------T 392 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC----------------------C
Confidence 6543 56666655443 22 34455666554322 211 1
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCc--EEEEeec
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRT--MKIWTQE 260 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~--i~iw~~~ 260 (262)
.......|+|+|+.|+..+. .++. +.+++.+
T Consensus 393 -~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~~ 425 (448)
T PRK04792 393 -RLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSID 425 (448)
T ss_pred -CCCCCceECCCCCEEEEEEe-cCCceEEEEEECC
Confidence 11123479999998877663 2443 5555543
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.8e-10 Score=92.36 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=104.4
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.++|... .....+..+...+...+|+|++++++.+..+ ..|++||+.+++... +..+.+.+.+++|+|+++.|
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 577778753 3344555566678899999999998876543 479999998876543 33455667789999999877
Q ss_pred EE-EeCCC--eEEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146 158 VT-SSYDG--LYRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~~-~~~dg--~i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+. .+.++ .|++||+.. ++++.|+..+. .+ .|+++|+.+++.. .+..
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-------- 319 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-------- 319 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec--------
Confidence 64 44444 588888764 56777665543 23 5777777665532 2221
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC---cEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR---TMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~ 260 (262)
+...+....|+|++++++.++ .++ .|.+|++.
T Consensus 320 --------------~~~~~~~~~~spdg~~i~~~~--~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 320 --------------RGGYNASPSWSPDGDLIAFVH--REGGGFNIAVMDLD 354 (417)
T ss_pred --------------CCCCccCeEECCCCCEEEEEE--ccCCceEEEEEeCC
Confidence 334566788999999998887 444 67777764
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=3.5e-09 Score=83.48 Aligned_cols=216 Identities=13% Similarity=0.216 Sum_probs=131.4
Q ss_pred cCceEEEEEccCCCeEEEecC----CCeEEEeecCCCC-CCCC------CCCCCC-ccccCCccccc----cceeEEEEe
Q 042146 23 LRAVSYVKFSHDGRLLTSSSA----EKTLLTYSLSSIS-NFDS------TPPSPL-QKFTGHEQGIS----DLATIRLWD 86 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~~-~~~~------~~~~~~-~~~~~~~~~v~----~~~~i~v~d 86 (262)
.....-++++|++++|.+..+ ++.|..|++.... .... ....+. ..+......+. ..+.+.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344567889999999988866 5789999876531 0000 000000 01111111111 122788888
Q ss_pred cCCCcccee----c----------ccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCe--e--eeeee-cCCCCee
Q 042146 87 VPTATSLKT----L----------IGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGK--C--LKVLP-AHSDPVT 146 (262)
Q Consensus 87 ~~~~~~~~~----~----------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~--~~~~~-~~~~~v~ 146 (262)
+.....+.. + ........++.++|+++++++.. ....|.+|++.... . ...+. .....-.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 876322211 1 11234578899999999887653 34589999987654 2 12222 2345678
Q ss_pred eEEEccCCCEEEEE-eCCCeEEEEeCCC------------------------------CCccEEEEEc-CCCeEEEEecC
Q 042146 147 AIDFNRDGTMIVTS-SYDGLYRILDAST------------------------------PNGKFILVGT-LDNTLRLWNYS 194 (262)
Q Consensus 147 ~~~~~~~~~~l~~~-~~dg~i~~~d~~~------------------------------~~~~~l~~~~-~dg~i~i~d~~ 194 (262)
.++|+|+++++++. -.+++|.+|++.. |++++|+++. ....|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 99999999977655 4678899998872 7888887766 45688999883
Q ss_pred --CCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 195 --TRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 195 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++++ +..+.. .....+.++++|+|++|+++.. .++.|.+|+++.
T Consensus 276 ~~~g~l~~~~~~~~----------------------~G~~Pr~~~~s~~g~~l~Va~~-~s~~v~vf~~d~ 323 (345)
T PF10282_consen 276 PATGTLTLVQTVPT----------------------GGKFPRHFAFSPDGRYLYVANQ-DSNTVSVFDIDP 323 (345)
T ss_dssp TTTTTEEEEEEEEE----------------------SSSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEET
T ss_pred cCCCceEEEEEEeC----------------------CCCCccEEEEeCCCCEEEEEec-CCCeEEEEEEeC
Confidence 2332 222221 3345789999999999999875 477899998863
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.8e-11 Score=107.87 Aligned_cols=163 Identities=14% Similarity=0.291 Sum_probs=121.0
Q ss_pred CCCCceeeeccc--ccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 2 SSDRSLESFRPY--TLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 2 s~d~~i~~~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
+.||+++.|.-. +.+..++ +-...|+.+.|+.+|+.+..+..||.+.+|..
T Consensus 2227 s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~-------------------------- 2280 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA-------------------------- 2280 (2439)
T ss_pred CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc--------------------------
Confidence 356666666522 2222221 12266777777777777777777777777733
Q ss_pred ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec---CCCeEEEEECCC---CeeeeeeecCCCCeeeEEEcc
Q 042146 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT---FNETIRIWDIKT---GKCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~ 152 (262)
. .++....+.|........|-. ..+++++ .++.+.+||..- ..+++ .+|.+.++++++.|
T Consensus 2281 ---------~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 ---------S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred ---------C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 2 455666778888888888874 5666654 467899999642 23344 68999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC----------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 153 DGTMIVTSSYDGLYRILDAST----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 153 ~~~~l~~~~~dg~i~~~d~~~----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
..+.|++|+.+|.|++||++. ....++++|+..|.++||++.....+.+++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999999999999987 4567999999999999999998888877764
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=1.3e-10 Score=86.38 Aligned_cols=211 Identities=15% Similarity=0.210 Sum_probs=136.9
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
..+++.++||...|++...-|..+-+++.+.|.++++|--. +.++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkr----------------------------------ds~q~ 59 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKR----------------------------------DSGQY 59 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEec----------------------------------ccccc
Confidence 34677889999999999999988889999999999999321 12222
Q ss_pred ceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECC----CCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 93 LKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK----TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 93 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
-..+. ....+++++.+.++...|++|-..|++.-+.+. ....++....|...+..+-|+....++++++.|..+.
T Consensus 60 wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 60 WPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred CchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 22221 234678999999999999999999999988653 3444566677889999999998888888888887654
Q ss_pred EEeCCC-----------------CCccEEEEEcCCCeEEEEec--CCCceeeEEeccCCceeEEEEEEecCCCee-----
Q 042146 168 ILDAST-----------------PNGKFILVGTLDNTLRLWNY--STRKILKTYSGYTNSKYCISSTFSVTNGKY----- 223 (262)
Q Consensus 168 ~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (262)
---.+. -+-.+...|...|.|..-.+ ....++.++.+|...+.+... .+.++.+
T Consensus 140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W--d~~~~~LfSg~~ 217 (404)
T KOG1409|consen 140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW--DPGQRLLFSGAS 217 (404)
T ss_pred EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE--cCCCcEEEeccc
Confidence 332222 00012223333333332221 122333344444333333321 1111111
Q ss_pred ------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 224 ------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 224 ------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+|...|..+..-+.-+.|++++ +||.|.+|+++.
T Consensus 218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~--edg~i~~w~mn~ 271 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG--EDGGIVVWNMNV 271 (404)
T ss_pred cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc--CCCeEEEEeccc
Confidence 112777888888877788899999 999999999874
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=1.9e-10 Score=85.59 Aligned_cols=206 Identities=19% Similarity=0.337 Sum_probs=132.6
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
.+|+-.|+++.++.|+..++++. |=.|.+|+++-... ...+.|+... .+..-
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-----------------------sFnIVDIKP~----nmEeL 212 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-----------------------SFNIVDIKPA----NMEEL 212 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCC-----------------------ceeEEEcccc----CHHHH
Confidence 46899999999999999888865 78899998754211 2334454321 12223
Q ss_pred CcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeee----eee------------ecCCCCeeeEEEccCCCEEEEEeC
Q 042146 100 TNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCL----KVL------------PAHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 100 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~------------~~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
..-|++..|+| ..+.++-.++.|+|++.|++...+. ..+ ..--..|.++.|+++|+++++-+.
T Consensus 213 teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy 292 (433)
T KOG1354|consen 213 TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY 292 (433)
T ss_pred HHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc
Confidence 45688899999 5566777778999999999854221 011 111246899999999999987653
Q ss_pred CCeEEEEeCCC------------------------------------CCccEEEEEcCCCeEEEEecCCCcee-eEEecc
Q 042146 163 DGLYRILDAST------------------------------------PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGY 205 (262)
Q Consensus 163 dg~i~~~d~~~------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~ 205 (262)
-+|++||+.. .++.++++|+-....++|++..|... .++...
T Consensus 293 -ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~as 371 (433)
T KOG1354|consen 293 -LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEAS 371 (433)
T ss_pred -ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeeccccc
Confidence 5899999865 45679999999999999997655432 222221
Q ss_pred CCc-----eeEEEEEEecCCCe----e--EEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 206 TNS-----KYCISSTFSVTNGK----Y--IVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 206 ~~~-----~~~~~~~~~~~~~~----~--~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
... +............+ . .......+...+|+|..+.+|.+. -+.+.||
T Consensus 372 r~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aa---tnnlyif 431 (433)
T KOG1354|consen 372 RKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAA---TNNLYIF 431 (433)
T ss_pred ccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeee---cCceEEe
Confidence 111 11111111100000 0 001344677889999999999986 3467665
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=3.2e-08 Score=76.86 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.7
Q ss_pred cccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
-...+..++++||++ .|++... .++.|.+.|...
T Consensus 297 vG~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t 331 (352)
T TIGR02658 297 LGHEIDSINVSQDAKPLLYALST-GDKTLYIFDAET 331 (352)
T ss_pred CCCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcC
Confidence 355788999999999 7776663 478899999753
No 257
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.22 E-value=3.9e-11 Score=62.48 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=36.1
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEee
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYS 51 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~ 51 (262)
++++++++|.++|++++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999996
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=5.6e-09 Score=85.05 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=99.2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.++|...+. .+.+..+...+...+|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777776443 34455567788999999999998765533 369999998876533 33334455678999999987
Q ss_pred E-EEeCCC--eEEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146 158 V-TSSYDG--LYRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~-~~~~dg--~i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+ +.+.+| .|.++|+.+ |+++.++..+. +| .|+++|+.+++......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--------- 328 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--------- 328 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec---------
Confidence 6 444455 588888765 67776655443 33 56667776665432211
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC--cEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR--TMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~--~i~iw~~~ 260 (262)
.........|+|+++.|+..+. .++ .|.+||+.
T Consensus 329 --------------~~~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~ 363 (430)
T PRK00178 329 --------------VGNYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQ 363 (430)
T ss_pred --------------CCCCccceEECCCCCEEEEEEc-cCCceEEEEEECC
Confidence 1112235679999998887762 233 46667664
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=89.96 Aligned_cols=166 Identities=20% Similarity=0.320 Sum_probs=113.7
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-----------------------------------
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV----------------------------------- 137 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------------------- 137 (262)
...+..|.+.|+.+.|+..|..+++|+.|..|.+||...++....
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 345678999999999999999999999999999999865432221
Q ss_pred -------------eecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC---------------------------CCc
Q 042146 138 -------------LPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST---------------------------PNG 176 (262)
Q Consensus 138 -------------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~---------------------------~~~ 176 (262)
+..|.++|..++.-|+. ..|.+++.|+.+.-+|++. .+.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 22477778888888844 4688888888888888776 234
Q ss_pred cEEEEEcCCCeEEEEecCCCce------eeEEecc----CCceeEEEEEEecCCCeeEEc--------------------
Q 042146 177 KFILVGTLDNTLRLWNYSTRKI------LKTYSGY----TNSKYCISSTFSVTNGKYIVS-------------------- 226 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------------------- 226 (262)
..+++|+.|..+++||.+.-.. +..+-.+ ...+....+.+....+.++++
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 5788999999999999774221 1111111 223333333333222222222
Q ss_pred ---------------cc--cceEEEEE-cCCCCeEEEeeecCCCcEEEEeec
Q 042146 227 ---------------HR--DPVISVAS-HPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 227 ---------------~~--~~v~~~~~-~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|. ..|..+-| -|...++++|+ .-|.|.||+-+
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS--DCGhIFiW~K~ 424 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS--DCGHIFIWDKK 424 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecC--ccceEEEEecc
Confidence 32 34666654 67888999999 89999999864
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=1e-09 Score=83.23 Aligned_cols=144 Identities=16% Similarity=0.286 Sum_probs=97.1
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---------------cceeEEEEecCCC
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---------------DLATIRLWDVPTA 90 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~~~i~v~d~~~~ 90 (262)
......+|.++++|.+..+....++++..... ................+. ....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 44455678899999998888877777655332 000000000111111111 111455555554
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
.....+-+|-.++..++++||+++++++..|..|++-.......+..+ -+|+.-|..++.-++ ..|++++.|+++++|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 334455689999999999999999999999999999776554444443 469999999998764 458999999999999
Q ss_pred eCCC
Q 042146 170 DAST 173 (262)
Q Consensus 170 d~~~ 173 (262)
|.++
T Consensus 221 d~~s 224 (390)
T KOG3914|consen 221 DITS 224 (390)
T ss_pred eccc
Confidence 9887
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.2e-09 Score=85.17 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCEEEeec-CCCe--EEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCC---CeEEEEeCCC-
Q 042146 102 YVFCINFNPQSNRIVSDT-FNET--IRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD---GLYRILDAST- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~-~dg~--i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~- 173 (262)
.....+|+|||+.|+..+ .+|. |.++++.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+..
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 345679999999877654 4564 44445532 23334444455567889999999988876543 3688999765
Q ss_pred ------------------CCccEEEEEcC---CCeEEEEecCCCceeeE
Q 042146 174 ------------------PNGKFILVGTL---DNTLRLWNYSTRKILKT 201 (262)
Q Consensus 174 ------------------~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 201 (262)
|+++.|+.... ...|+++|+..++....
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 67776654332 24677778776654433
No 262
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.19 E-value=4.9e-08 Score=71.41 Aligned_cols=194 Identities=10% Similarity=0.144 Sum_probs=105.5
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEE
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFC 105 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~ 105 (262)
=+-++||||+.+||.+...|+|+++|+.....+ .+..... ....-...|..
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf---------------------------~I~p~~~--~~~d~~~Aiag 96 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF---------------------------VIPPAMS--FPGDLSDAIAG 96 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE---------------------------EcCcccc--cCCccccceee
Confidence 467999999999999999999999998753222 1111000 00011234555
Q ss_pred EEEeCC------CCEEEeecCCCeEEEEECCC-----Ceeeeeee---cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 106 INFNPQ------SNRIVSDTFNETIRIWDIKT-----GKCLKVLP---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 106 ~~~~~~------~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
|.|.+. ...|++-..+|.++=|-+.. .+..+.+. .+...|.++.|+|..++|++|+....
T Consensus 97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------ 170 (282)
T PF15492_consen 97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------ 170 (282)
T ss_pred eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------
Confidence 555431 12355556677777666432 22333332 24678999999999888887764321
Q ss_pred CCCCccEEEEEcCCCeEEEEecCCCceeeEEe-ccCCceeEE---EEEEecCCCeeE---EccccceEEEEEcCCCCeEE
Q 042146 172 STPNGKFILVGTLDNTLRLWNYSTRKILKTYS-GYTNSKYCI---SSTFSVTNGKYI---VSHRDPVISVASHPAKNIIA 244 (262)
Q Consensus 172 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~ 244 (262)
....-.++ +.-+.-|.+-++.+-.... ..++.+... ...+......++ ......|..|..||||..||
T Consensus 171 ----~~~~s~a~-~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 171 ----QDGMSKAS-SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred ----CCcccccc-ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence 00001111 1123444443332221111 111111000 000000111111 11467899999999999999
Q ss_pred EeeecCCCcEEEEeecc
Q 042146 245 SGALDNDRTMKIWTQEK 261 (262)
Q Consensus 245 ~~~~d~d~~i~iw~~~~ 261 (262)
+.. .+|.|.+|++..
T Consensus 246 ~ih--~sG~lsLW~iPs 260 (282)
T PF15492_consen 246 CIH--FSGSLSLWEIPS 260 (282)
T ss_pred EEE--cCCeEEEEecCc
Confidence 999 889999999863
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=8.1e-08 Score=72.40 Aligned_cols=221 Identities=15% Similarity=0.295 Sum_probs=137.9
Q ss_pred cCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCC------CCCCCCCC--CccccCCcccc----ccceeEEEE
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISN------FDSTPPSP--LQKFTGHEQGI----SDLATIRLW 85 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~------~~~~~~~~--~~~~~~~~~~v----~~~~~i~v~ 85 (262)
.+.+.++-|+|+|+++.|.++-. +|.|.-|.++.... .......+ -..+......+ +..+.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46777899999999999888754 47788887765210 01111111 11111111111 122377788
Q ss_pred ecCCCccce---ecccCCcc----------eEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeee----eeecCCCCeee
Q 042146 86 DVPTATSLK---TLIGHTNY----------VFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLK----VLPAHSDPVTA 147 (262)
Q Consensus 86 d~~~~~~~~---~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~----~~~~~~~~v~~ 147 (262)
-++....+. ....|.+. +....+.|++++|++..- --.|.+|++..++... .++ ....-..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRH 195 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRH 195 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcce
Confidence 775522221 12223333 788899999999887653 2379999999775432 222 3445689
Q ss_pred EEEccCCCEEEEEe-CCCeEEEEeCCC------------------------------CCccEEEEEcCC-CeEEEEecCC
Q 042146 148 IDFNRDGTMIVTSS-YDGLYRILDAST------------------------------PNGKFILVGTLD-NTLRLWNYST 195 (262)
Q Consensus 148 ~~~~~~~~~l~~~~-~dg~i~~~d~~~------------------------------~~~~~l~~~~~d-g~i~i~d~~~ 195 (262)
|.|+|++++..... .+++|.+|.... ++|++|.++..- ..|.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999999866554 789999998665 788888877532 3566665543
Q ss_pred C-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146 196 R-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~ 262 (262)
. ..+..+.... .+....+...++|.+++|+++..+ ..+|.+|.++++
T Consensus 276 ~~g~L~~~~~~~-------------------teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~ 323 (346)
T COG2706 276 DGGKLELVGITP-------------------TEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKE 323 (346)
T ss_pred CCCEEEEEEEec-------------------cCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCC
Confidence 2 2222222110 044457889999999999999864 556999988753
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=5.4e-09 Score=76.41 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=83.6
Q ss_pred eEEEEEeCCCCEEEeecCCCeEEEEECCCCee--eeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC------
Q 042146 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKC--LKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------ 173 (262)
..++.|++.+..++++..+|.+.+-+...... ++..+.|.-+.+-..|+. +.+++++|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788899999999999999999666554443 347889999999999987 567999999999999999993
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecC-CCceeeEEe
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYS-TRKILKTYS 203 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~ 203 (262)
|.+.++++|+.|..|++||.+ .++++..-+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~ 251 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK 251 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence 677899999999999999999 466665443
No 265
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=1.4e-08 Score=83.58 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=101.5
Q ss_pred cccccceecccCcCceEEEEEccCC------------CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDG------------RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
..++.++.++.|+..|+.+.|.|.. -.||++...|.|.+|
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~---------------------------- 94 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV---------------------------- 94 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE----------------------------
Confidence 4678899999999999999998732 256666677777666
Q ss_pred ceeEEEEecCCCccceecccCCcceEEEEEeC---CC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-C
Q 042146 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNP---QS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-D 153 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~ 153 (262)
|...+..+..+..|..++..++|-| +. ..|++-....+|.+|+..+|+..+..........|+.+.| |
T Consensus 95 -------d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 95 -------DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred -------EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 4455666667777888999999977 33 4567777778999999999999999887777888899999 8
Q ss_pred CCEEEEEeCCCeEEEEeCCC
Q 042146 154 GTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~ 173 (262)
.+++..-+..|.+.+.+...
T Consensus 168 ~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred cceEEEEccCceEEEEeccC
Confidence 88888888888888777543
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=4.5e-09 Score=77.58 Aligned_cols=179 Identities=19% Similarity=0.373 Sum_probs=119.5
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------------------
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI------------------------- 76 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v------------------------- 76 (262)
....|+++.|...|.||++|...|.|.++.-+....- .......+++|....
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c---eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC---EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccccc---chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 3466999999999999999999999999976543210 011112222222211
Q ss_pred ----ccceeEEEEecCCC-------------------cccee-----------------------c-ccCCcceEEEEEe
Q 042146 77 ----SDLATIRLWDVPTA-------------------TSLKT-----------------------L-IGHTNYVFCINFN 109 (262)
Q Consensus 77 ----~~~~~i~v~d~~~~-------------------~~~~~-----------------------~-~~~~~~v~~~~~~ 109 (262)
....+|++|.+... .++.+ . ..|..-|+++.++
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 11228999987432 01000 0 2466678899999
Q ss_pred CCCCEEEeecCCCeEEEEECCCCe---eeeeeecCC-----CCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC-------
Q 042146 110 PQSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHS-----DPVTAIDFNRDG-TMIVTSSYDGLYRILDAST------- 173 (262)
Q Consensus 110 ~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~------- 173 (262)
.|...++++. |-.|.+|+++-.. .+..++.|. .-|++..|+|.. ..+.-.+..|.|++-|+|.
T Consensus 182 sD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 8888888765 7789999986321 233344454 358899999944 5677778899999999995
Q ss_pred -----------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEecc
Q 042146 174 -----------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGY 205 (262)
Q Consensus 174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 205 (262)
++|+++++-+. -+++|||.+. ..++.+++-|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 67778876653 5799999986 4567776543
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=2.8e-08 Score=77.95 Aligned_cols=132 Identities=12% Similarity=0.215 Sum_probs=92.5
Q ss_pred EEEEEeCCCCEEEeec-----------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CCCeEEEEe
Q 042146 104 FCINFNPQSNRIVSDT-----------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YDGLYRILD 170 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d 170 (262)
..+.|++.|++++.-- ....+++++++.....-.. .-.++|...+|.|.++.+++.+ .+..+.++|
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecc
Confidence 3577888888765321 1245788887744433222 5588999999999888776655 677888888
Q ss_pred CCC-----------------CCccEEEEEcCC---CeEEEEecCCCceee-EEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 171 AST-----------------PNGKFILVGTLD---NTLRLWNYSTRKILK-TYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 171 ~~~-----------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
++. |.+++++.++-+ |.+.+||......+. .+.+ .
T Consensus 305 lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~------------------------~ 360 (561)
T COG5354 305 LRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG------------------------L 360 (561)
T ss_pred cccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec------------------------C
Confidence 876 678888886644 789999987654443 4433 2
Q ss_pred ceEEEEEcCCCCeEEEeee----cCCCcEEEEeec
Q 042146 230 PVISVASHPAKNIIASGAL----DNDRTMKIWTQE 260 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~----d~d~~i~iw~~~ 260 (262)
...-+.|+|+++++.+... ..|..|+||++.
T Consensus 361 n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 361 NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 3456789999998877641 137899999985
No 268
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.16 E-value=3.5e-09 Score=88.35 Aligned_cols=154 Identities=14% Similarity=0.242 Sum_probs=112.0
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.+..+|+.+.+..+...-....|.-|+. +++++.+|...|+|.+-|+++.+.++++.+|.+.|.++.. .|+.|++|
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitC 233 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITC 233 (1118)
T ss_pred heeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEe
Confidence 4566677666655544433334555554 5889999999999999999999999999999999988765 48899999
Q ss_pred eC---------CCeEEEEeCCC-------------------C-CccEEEEEcCCCeEEEEecCC-Cce-eeEEeccCCce
Q 042146 161 SY---------DGLYRILDAST-------------------P-NGKFILVGTLDNTLRLWNYST-RKI-LKTYSGYTNSK 209 (262)
Q Consensus 161 ~~---------dg~i~~~d~~~-------------------~-~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~ 209 (262)
+. |..|++||+|. | =...+++.+..|...+-|..+ ..+ ...+..+
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~---- 309 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN---- 309 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc----
Confidence 86 45678888887 1 134577777778887777332 111 1111111
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.....+..+.++++++.++.|. .+|.|.+|.-.
T Consensus 310 ----------------p~~s~i~~fDiSsn~~alafgd--~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 310 ----------------PNGSGISAFDISSNGDALAFGD--HEGHVNLWADR 342 (1118)
T ss_pred ----------------cCCCcceeEEecCCCceEEEec--ccCcEeeecCC
Confidence 1445589999999999999999 89999999743
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=2.1e-10 Score=93.49 Aligned_cols=125 Identities=24% Similarity=0.420 Sum_probs=90.9
Q ss_pred cceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146 15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL 93 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~ 93 (262)
....+.+|..+|+.+-|+|+. ..+++++.|-.+..||+.... .++
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~----------------------------------~p~ 151 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH----------------------------------RPF 151 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC----------------------------------cce
Confidence 455678999999999999864 478999999999999775421 111
Q ss_pred eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeC
Q 042146 94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~ 171 (262)
..+..-......++|+-...-+.+.+....|++||++.+ .++..+++|...|+.++|.. -...+.+++.||+|+.||.
T Consensus 152 ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 152 YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 222222233445777764444555566778999999865 56778888999999999876 3346889999999999997
Q ss_pred CC
Q 042146 172 ST 173 (262)
Q Consensus 172 ~~ 173 (262)
..
T Consensus 232 ~k 233 (1081)
T KOG0309|consen 232 SK 233 (1081)
T ss_pred cc
Confidence 65
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=5.2e-10 Score=88.59 Aligned_cols=230 Identities=14% Similarity=0.190 Sum_probs=150.7
Q ss_pred CCCCceeeec---------ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-------CCCCCCC
Q 042146 2 SSDRSLESFR---------PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-------DSTPPSP 65 (262)
Q Consensus 2 s~d~~i~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~ 65 (262)
|.|.+++.|. +.....+++.|+++|.++.|-.+-++++++ ||.|.+||---.... .......
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCce
Confidence 5788888885 122667899999999999999998888765 799999985332111 1111222
Q ss_pred CccccCCcccc-----ccceeEEEEecCCCccceecc-----cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146 66 LQKFTGHEQGI-----SDLATIRLWDVPTATSLKTLI-----GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135 (262)
Q Consensus 66 ~~~~~~~~~~v-----~~~~~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 135 (262)
+..+..-...+ ..-.+|+++|.+..+....++ +..+.+.++++.|.|++++++-.+|+|.+.|.++|+.+
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 33333312211 112289999998887666553 44577999999999999999999999999999999988
Q ss_pred eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE-EeCCC------------------CCccEEEEEcCCCeEEEEecC-C
Q 042146 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI-LDAST------------------PNGKFILVGTLDNTLRLWNYS-T 195 (262)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~-~d~~~------------------~~~~~l~~~~~dg~i~i~d~~-~ 195 (262)
...+.-.-....++ .|..+.|+....|.++.+ |.... .-|.-|+++.....+.+|--. .
T Consensus 912 Nswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~ 990 (1034)
T KOG4190|consen 912 NSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAE 990 (1034)
T ss_pred ccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchh
Confidence 77654443333333 244455666666666666 64333 245677777777777777421 1
Q ss_pred Cc---eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 196 RK---ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 196 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
.. .+..++..+ ..+..++++--|-+.-+..|. +.|.|.+
T Consensus 991 ~ha~stitKiR~d~--------------------f~G~lTala~LPLN~afLaGn--e~G~IaL 1032 (1034)
T KOG4190|consen 991 LHAESTITKIRPDE--------------------FPGTLTALAPLPLNCAFLAGN--EHGAIAL 1032 (1034)
T ss_pred hhhhhhhccccccc--------------------cCCccceeeeccccchhhccC--CCCceee
Confidence 11 111222111 445677888888777777777 7788875
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=2.2e-10 Score=85.29 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=100.0
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-----eeeeeeecCCCCeeeEEEcc-CC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-----KCLKVLPAHSDPVTAIDFNR-DG 154 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~ 154 (262)
.+.+-|++++... .+. .++.|.++.|+..++++..|+.+|.|..+|++.+ .+.+.+ .|.+.|+++..-. ++
T Consensus 235 qv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~ 311 (425)
T KOG2695|consen 235 QVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQ 311 (425)
T ss_pred eeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhcccc
Confidence 5556666655332 222 5677889999988999999999999999999865 344555 4899999998877 78
Q ss_pred CEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 155 TMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
.+|.+.+.+|+|++||+|. +....+++++.|...+||.++.|+++.+++..
T Consensus 312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 8999999999999999986 56678888999999999999999999988753
No 272
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.8e-09 Score=85.59 Aligned_cols=158 Identities=13% Similarity=0.227 Sum_probs=112.6
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA 90 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~ 90 (262)
+.+..+..|..-.++++++..++...+|++|+.+|.|..||...... +...+....
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr------------------------v~~l~~~~~ 218 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR------------------------VGTLDAASS 218 (703)
T ss_pred cccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh------------------------heeeecccc
Confidence 35667777777779999999999999999999999999997644211 111222211
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC--CCCeeeEEEccC--CCEEEEEeCCCeE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH--SDPVTAIDFNRD--GTMIVTSSYDGLY 166 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i 166 (262)
-.-.........|++++|+.+|-.+++|+.+|.+.|||+++.+++..- .| ..+|..+.|.+. ++.+++ .....+
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~ 296 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDKRIL 296 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEe-cchHHh
Confidence 111111122345999999988999999999999999999999887654 35 458999999875 334444 345689
Q ss_pred EEEeCCC-------------------CCccEEEEEcCCCeEEEEecC
Q 042146 167 RILDAST-------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 167 ~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
++||-.. |++.+++++.+++.+..|=+.
T Consensus 297 kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 297 KIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 9999665 677788888877776665444
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=8.1e-08 Score=84.19 Aligned_cols=175 Identities=14% Similarity=0.191 Sum_probs=104.2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeee----cCCCCeeeEEEccC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLP----AHSDPVTAIDFNRD 153 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~ 153 (262)
.++||+-+ |.....-..-.+--.+++|-|.|+++|+... ...|.+|. ++|-.-..|. .....|..+.|+++
T Consensus 238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 77888864 4433333333344457899999999998764 34577776 4554433332 23568999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecC----CCc--------
Q 042146 154 GTMIVTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYS----TRK-------- 197 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~----~~~-------- 197 (262)
+..|+....|. |.+|-..+ .+...|...+.+|.+..+++. .+.
T Consensus 316 s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g 394 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG 394 (928)
T ss_pred CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence 99999987665 99998776 223445555555555444332 110
Q ss_pred eeeEEeccCCceeEEEEE-EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 198 ILKTYSGYTNSKYCISST-FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+..+.+..-.....+.+ ..++-...-.....+|.+++|++++..+++-. .||.|.+|...
T Consensus 395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~--~d~~l~~~~~~ 456 (928)
T PF04762_consen 395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT--SDGSLSIYEWD 456 (928)
T ss_pred EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE--CCCCEEEEEec
Confidence 111111111111111111 11111112222567899999999998888887 89999999853
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.3e-07 Score=76.27 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=70.7
Q ss_pred ceEEEEEccCCCe-EEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146 25 AVSYVKFSHDGRL-LTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY 102 (262)
Q Consensus 25 ~v~~~~~~~~~~~-l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~ 102 (262)
....-.|+|||+. ++..+.++ .- .|.++|+.+++..... ...+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~---------------------------------~Iyv~dl~tg~~~~lt-~~~g~ 234 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKP---------------------------------TLYKYNLYTGKKEKIA-SSQGM 234 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCC---------------------------------EEEEEECCCCcEEEEe-cCCCc
Confidence 6778889999874 55444331 21 2456677666543332 24455
Q ss_pred eEEEEEeCCCCEEEe-ecC--CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC--eEEEEeCCC
Q 042146 103 VFCINFNPQSNRIVS-DTF--NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG--LYRILDAST 173 (262)
Q Consensus 103 v~~~~~~~~~~~l~~-~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~ 173 (262)
.....|+|||+.++. .+. +..|.++|+.+++. ..+..+........|+|||+.|+..+. .+ .|.+.|+..
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 667789999987654 333 35788889887764 334334433455689999987766653 33 466666654
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2e-08 Score=81.90 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=94.1
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-C--CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-N--ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+. + ..|.+||+.+++... +....+.....+|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 45555654332 2334445667889999999998876543 2 368999998876432 22223344578999999977
Q ss_pred EE-EeCCCe--EEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146 158 VT-SSYDGL--YRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~~-~~~dg~--i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+. .+.+|. |.++|+.+ |+++.++..+. ++ .|+++|+.+++.... ..
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~-------- 347 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TF-------- 347 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ec--------
Confidence 65 456664 77777654 67776665543 33 466667766654322 11
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
........+|+|+|+.|+..+. .++..+||-+
T Consensus 348 --------------~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~ 379 (448)
T PRK04792 348 --------------EGEQNLGGSITPDGRSMIMVNR-TNGKFNIARQ 379 (448)
T ss_pred --------------CCCCCcCeeECCCCCEEEEEEe-cCCceEEEEE
Confidence 1112234689999998887763 2455555443
No 276
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.6e-09 Score=83.61 Aligned_cols=204 Identities=20% Similarity=0.226 Sum_probs=148.1
Q ss_pred CCCCceeeecccc-----cceecccCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCC----CCCCccccC
Q 042146 2 SSDRSLESFRPYT-----LTQTLNGHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTP----PSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~----~~~~~~~~~ 71 (262)
|.||.++.|.+-. .+..+..|.+.|.+++.+-++..+.|.+. |..++++|+++........ +........
T Consensus 27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s 106 (558)
T KOG0882|consen 27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS 106 (558)
T ss_pred ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecC
Confidence 4688888887544 66777889999999999999999999887 9999999998754332221 111111222
Q ss_pred Cccccccce-------eEEEEecCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------Ceee-
Q 042146 72 HEQGISDLA-------TIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------GKCL- 135 (262)
Q Consensus 72 ~~~~v~~~~-------~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~- 135 (262)
....+..++ .+.++|-.... ....-.-|..+|.++.++|.+..+++....|.|.-|..+. .+..
T Consensus 107 kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 107 KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccc
Confidence 222222222 56677754433 2223345889999999999999999999999999998862 1111
Q ss_pred --------eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------------------
Q 042146 136 --------KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------------------- 173 (262)
Q Consensus 136 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------------------- 173 (262)
..+...+....++.|+|++..+.+-+.|..|++++.++
T Consensus 187 ~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 187 ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence 11222345678999999999999999999999999876
Q ss_pred -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 206 (262)
..+++|+.|+-=| |++.++.++++++.+...+
T Consensus 267 verelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 267 VERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE 317 (558)
T ss_pred HHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence 5688999888766 8999999999888876433
No 277
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.2e-09 Score=87.45 Aligned_cols=109 Identities=13% Similarity=0.213 Sum_probs=84.1
Q ss_pred EEEEEccCCCeEEEecC----CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146 27 SYVKFSHDGRLLTSSSA----EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY 102 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~ 102 (262)
+-..|+|..++||+++- .|.|.|| .++|++..... -.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf------------------------------------adtGEPqr~Vt-~P~h 61 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF------------------------------------ADTGEPQRDVT-YPVH 61 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE------------------------------------ecCCCCCcccc-ccee
Confidence 44678999999888763 4566655 13444332221 1122
Q ss_pred eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|||+|..|+++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999998899999999999999988777666667799999999999999999999999999999865
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=7.3e-10 Score=57.60 Aligned_cols=39 Identities=33% Similarity=0.753 Sum_probs=36.4
Q ss_pred CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
++++..+.+|.++|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.5e-08 Score=80.58 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=103.3
Q ss_pred Cceeeec--ccccceec--ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 5 RSLESFR--PYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 5 ~~i~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
|.+..|. ..++...+ ..|.+.|.++.++.+-..|.+++.|+.+..|+.
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~---------------------------- 131 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE---------------------------- 131 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec----------------------------
Confidence 4455554 33444444 479999999999999999999999999888854
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC-----CC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD-----GT 155 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~ 155 (262)
...+.++.+.+.+..+.+++.+||+..+++++ +.|++||+++.+.+..|.+|.++|.++.|-.+ |.
T Consensus 132 -------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 132 -------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred -------ccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 34555556666677788999999999999987 68999999999999999999999999999876 66
Q ss_pred EEEEE-eCCCeEEEEeCCC
Q 042146 156 MIVTS-SYDGLYRILDAST 173 (262)
Q Consensus 156 ~l~~~-~~dg~i~~~d~~~ 173 (262)
+++++ ..+.-+.+|-+..
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 65554 4556677776544
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.9e-07 Score=83.28 Aligned_cols=146 Identities=14% Similarity=0.242 Sum_probs=96.8
Q ss_pred EEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec---------------CCCCeeeEEEccCCCEEE-EEeCCCeE
Q 042146 104 FCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA---------------HSDPVTAIDFNRDGTMIV-TSSYDGLY 166 (262)
Q Consensus 104 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~~~~dg~i 166 (262)
..++++| ++.++++.+.++.|++||..++... .+.+ .-.....|+++|+++.|+ +-+.++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 5789999 5666677778899999998876532 2211 012346799999998554 55567899
Q ss_pred EEEeCCC-----------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 167 RILDAST-----------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 167 ~~~d~~~-----------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
++||+.+ +++..+++-..++.|++||..++...... +.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-cc
Confidence 9998642 34566666677788888888766554322 21
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
... ...++....+.-.....++++++|+++++-+ .++.|++|++++
T Consensus 844 G~~--------G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt--~Nn~Irvid~~~ 889 (1057)
T PLN02919 844 GKA--------GFKDGKALKAQLSEPAGLALGENGRLFVADT--NNSLIRYLDLNK 889 (1057)
T ss_pred CCc--------CCCCCcccccccCCceEEEEeCCCCEEEEEC--CCCEEEEEECCC
Confidence 100 0011111222334678999999999888877 789999999864
No 281
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.8e-09 Score=78.45 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=77.6
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVT 159 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 159 (262)
+++.+..+-+....+..+...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ .++++++|.-+. ++++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 56666666666667778889999999999666 7889999999999999999999988877 789999998855 57888
Q ss_pred EeCCCeEEEEeCCC
Q 042146 160 SSYDGLYRILDAST 173 (262)
Q Consensus 160 ~~~dg~i~~~d~~~ 173 (262)
|...|.|.+||++.
T Consensus 254 Gl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQ 267 (463)
T ss_pred eccCceEEEEEccC
Confidence 88999999999987
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=2.1e-07 Score=67.61 Aligned_cols=199 Identities=9% Similarity=0.029 Sum_probs=118.0
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCCCC----CCC--CCCccccCC--cccc-ccceeEEEEecCCCccceecccCCcceE
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNFDS----TPP--SPLQKFTGH--EQGI-SDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~--~~~~~~~~~--~~~v-~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
...+||.|+..|...+|.+.+...... ... ......... ...+ ....++++.+++.+..-....-..-.++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999998764221100 000 000000000 0011 1112666776654433222211113388
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCC-e-eeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTG-K-CLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------- 173 (262)
+++++++++++++.+....|..|.+... + .+.. ...-+..-.+..|+.....+|++..||++.+||+|.
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988643 2 2221 222344557889999999999999999999999987
Q ss_pred ------CCc-------------cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc-cceEE
Q 042146 174 ------PNG-------------KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR-DPVIS 233 (262)
Q Consensus 174 ------~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 233 (262)
++| .+|+..-.-+.+.+.|++++.-.+.+...+.. ...|. ..|..
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~---------------~~~~~tq~ifg 307 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV---------------ERKHNTQHIFG 307 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc---------------ccccccccccc
Confidence 111 23344444466777888877655544322111 00133 33777
Q ss_pred EEEcCCCCeEEEee
Q 042146 234 VASHPAKNIIASGA 247 (262)
Q Consensus 234 ~~~~p~~~~l~~~~ 247 (262)
-.|+.++.-+.+.+
T Consensus 308 t~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 308 TNFNNENESNDVKN 321 (344)
T ss_pred ccccCCCccccccc
Confidence 77877776666665
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=3.6e-07 Score=68.70 Aligned_cols=194 Identities=17% Similarity=0.139 Sum_probs=111.6
Q ss_pred EEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc-cc--CCccccccceeEEEEecCCCccceecc----c-
Q 042146 28 YVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK-FT--GHEQGISDLATIRLWDVPTATSLKTLI----G- 98 (262)
Q Consensus 28 ~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~--~~~~~v~~~~~i~v~d~~~~~~~~~~~----~- 98 (262)
+..|.+ ++.++++--..+.|..|+...........+.+... +. ....-+.....+.++|..+++...... .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCc
Confidence 345665 55555555556666666655432211111111100 00 111111111245556776664332222 1
Q ss_pred CCcceEEEEEeCCCCEEEeecCC--------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEE
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFN--------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRIL 169 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~ 169 (262)
.....+.+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEE
Confidence 34678899999999977765543 568888877 55433333 345568999999998765 55677888888
Q ss_pred eCCC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 170 DAST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 170 d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
++.. .++++.++.-..+.|.++|.+ |+.+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------------------ 222 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL------------------ 222 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-------------------
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC------------------
Confidence 8753 456666666677888888876 887777764
Q ss_pred eEEccccceEEEEE-cCCCCeEEEe
Q 042146 223 YIVSHRDPVISVAS-HPAKNIIASG 246 (262)
Q Consensus 223 ~~~~~~~~v~~~~~-~p~~~~l~~~ 246 (262)
....+++++| -|+.+.|+..
T Consensus 223 ----p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 ----PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----SSSSEEEEEEESTTSSEEEEE
T ss_pred ----CCCCEEEEEEECCCCCEEEEE
Confidence 3347889999 4665555443
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=1.8e-09 Score=88.16 Aligned_cols=179 Identities=24% Similarity=0.334 Sum_probs=120.4
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC--
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT-- 100 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-- 100 (262)
.+++.++..+|.|+-+|.++.-|.+. -|++. ...+..-+ .|.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~----------------------------------p~~ppr~l-~h~tp 67 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDD----------------------------------PFTPPRWL-HHITP 67 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEE-EeccC----------------------------------CCCCceee-eccCc
Confidence 56788999999999999998776433 23221 11111111 122
Q ss_pred cceEEEEEeCC--CCEEEeecCCCeEEEEECCC---CeeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCCC
Q 042146 101 NYVFCINFNPQ--SNRIVSDTFNETIRIWDIKT---GKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDASTP 174 (262)
Q Consensus 101 ~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~ 174 (262)
-.|-...|+|. ..+-++......-.+|++.. ......+.+|...|+.+-|+| ....+++++.|-.+..||+++|
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 23555667663 33344444455667788752 333445678999999999999 4568999999999999999983
Q ss_pred C---------------------ccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146 175 N---------------------GKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI 232 (262)
Q Consensus 175 ~---------------------~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (262)
. ...+++.+....|++||++.| .++..+++ |...|+
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~----------------------~vs~vn 205 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG----------------------HVSSVN 205 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc----------------------cceeee
Confidence 2 223344455567899998875 46666666 777788
Q ss_pred EEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146 233 SVASHPA-KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 233 ~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+.|..- ...+.+++ .||+|+.|+.++
T Consensus 206 ~~~fnr~~~s~~~s~~--~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 206 SIDFNRFKYSEIMSSS--NDGTVKFWDYSK 233 (1081)
T ss_pred hHHHhhhhhhhhcccC--CCCceeeecccc
Confidence 8888764 34566777 799999999864
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.1e-07 Score=69.32 Aligned_cols=144 Identities=12% Similarity=0.200 Sum_probs=103.9
Q ss_pred cCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCC--Cee--eeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEE
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKT--GKC--LKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRIL 169 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~ 169 (262)
...+..+-|+++|+++.|+++-.+ |.|.-|.+.. |+. +........+-+-+++++++++++++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456678899999999999887654 6677766653 543 222222233448899999999888886 56789888
Q ss_pred eCCC---------------------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 170 DAST---------------------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 170 d~~~---------------------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
-++. |++++|++.+ .-..|.+|++..|++...-+..-
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--------- 187 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--------- 187 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc---------
Confidence 8754 7888888876 33478999998776654333211
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
......+.|.|+|++++....+. -+++|.+|++++
T Consensus 188 ----------~~G~GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~ 222 (346)
T COG2706 188 ----------KPGAGPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNP 222 (346)
T ss_pred ----------CCCCCcceEEEcCCCcEEEEEec-cCCEEEEEEEcC
Confidence 14556789999999999888873 589999999875
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.94 E-value=6.9e-07 Score=71.61 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=102.3
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCcccc-CCcccc---ccceeEEEEecCCCccceecccCCcceE----
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQKFT-GHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVF---- 104 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~-~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~---- 104 (262)
++..++.++.++.+..+|.++.+.. ...........+ .....+ ...+.+..+|.++++.+.+.........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 4667888888999999998654321 111111100000 001111 1223789999999888776654322111
Q ss_pred -EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC----C---eeeEEEcc--CCCEEEEEeCCCeEEEEeCCC-
Q 042146 105 -CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD----P---VTAIDFNR--DGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 105 -~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~- 173 (262)
+... .+..++.+..+|.+..+|+++++.+........ . +..+.-+| .+..+++++.+|.+..+|..+
T Consensus 184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 1112 234678888899999999999987765432110 0 01111112 355788888899999999865
Q ss_pred ---------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
..+..+++++.+|.++.+|..+|+.+...
T Consensus 262 ~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 262 RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 24667888889999999999999877655
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=6.1e-09 Score=77.84 Aligned_cols=122 Identities=15% Similarity=0.310 Sum_probs=96.6
Q ss_pred EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------
Q 042146 116 VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------- 173 (262)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------- 173 (262)
++.+.+..|-+-|++++.. ..+. .++.|.++.|...+++++.|+.+|.|..+|+|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 4455577888889888753 3343 577899999999899999999999999999987
Q ss_pred ---CCccEEEEEcCCCeEEEEecCCCce---eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 174 ---PNGKFILVGTLDNTLRLWNYSTRKI---LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 174 ---~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
.++++|++.+.+|.|++||++.-++ +.++.+|.+.- .-.-+..+|....++++|
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~--------------------a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS--------------------AYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc--------------------cccccccccccceEEEcc
Confidence 4788999999999999999998777 88888865431 112234567777888888
Q ss_pred ecCCCcEEEEeecc
Q 042146 248 LDNDRTMKIWTQEK 261 (262)
Q Consensus 248 ~d~d~~i~iw~~~~ 261 (262)
+|...|||.++.
T Consensus 366 --dDcytRiWsl~~ 377 (425)
T KOG2695|consen 366 --DDCYTRIWSLDS 377 (425)
T ss_pred --CeeEEEEEeccc
Confidence 899999999863
No 288
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.92 E-value=6.7e-07 Score=71.68 Aligned_cols=166 Identities=14% Similarity=0.223 Sum_probs=102.0
Q ss_pred CCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCccccC------Ccccc---ccceeEEEEecCCCccceecccCC----
Q 042146 35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQKFTG------HEQGI---SDLATIRLWDVPTATSLKTLIGHT---- 100 (262)
Q Consensus 35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~------~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~---- 100 (262)
+..++.++.++.|..||.++.+.. ............. ....+ ...+.+..+|.++++.+.+.....
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 456777788999999998764331 1110000000000 00111 112367888888887665432110
Q ss_pred c---ceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146 101 N---YVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 101 ~---~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 173 (262)
. ....+.-.| .+..+++++.+|.+..+|.++++.+..... .. ..... ..+..++.++.+|.+..+|..+
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 0 000111111 356788888899999999999988776642 11 12222 2466788888899998888754
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
..+..+++++.+|.|+++|..+|+.+..++.
T Consensus 301 ~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred EEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 2356788999999999999999999988875
No 289
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.4e-07 Score=71.68 Aligned_cols=175 Identities=17% Similarity=0.361 Sum_probs=115.6
Q ss_pred cCcCceEEEEEccCCC--eEEE-----ecCCCeEEEeecCCCCCCCCCCC------CCCc-cccCCcccc----------
Q 042146 21 GHLRAVSYVKFSHDGR--LLTS-----SSAEKTLLTYSLSSISNFDSTPP------SPLQ-KFTGHEQGI---------- 76 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~--~l~s-----~~~d~~i~iw~~~~~~~~~~~~~------~~~~-~~~~~~~~v---------- 76 (262)
-|...|+.+.+||-+. .+|+ .|.-+.|+||.+........... ..+. .+.....++
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 3678899999999632 3443 46667899998763211111000 0000 011111111
Q ss_pred -----ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146 77 -----SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLKVLPAHSDPVTAID 149 (262)
Q Consensus 77 -----~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 149 (262)
+.-..+++.+++.......+. ..++|.++.|+|+++.+++ |..--++.|+|++ +.++..+ ..++=+++-
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~ 318 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF 318 (566)
T ss_pred CCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence 111177777776333333333 4689999999999988765 4445689999986 6666665 466778999
Q ss_pred EccCCCEEEEEeC---CCeEEEEeCCC------------------CCccEEEEEcC------CCeEEEEecCCCceee
Q 042146 150 FNRDGTMIVTSSY---DGLYRILDAST------------------PNGKFILVGTL------DNTLRLWNYSTRKILK 200 (262)
Q Consensus 150 ~~~~~~~l~~~~~---dg~i~~~d~~~------------------~~~~~l~~~~~------dg~i~i~d~~~~~~~~ 200 (262)
|+|.|++++.++- -|.+-+||+.+ |+|+++++++. |..++||+.. |..+.
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 9999999988875 47899999876 99999999974 4678899975 55443
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.89 E-value=8.5e-07 Score=77.99 Aligned_cols=184 Identities=13% Similarity=0.188 Sum_probs=119.2
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY 102 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~ 102 (262)
...|.++.|-++...++.+..+|.|.+...+. +... ..+.....-...
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-------------------------------~~~~-~~~E~VG~vd~G 122 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDP-------------------------------DPDE-DEIEIVGSVDSG 122 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccC-------------------------------CCCC-ceeEEEEEEcCc
Confidence 46799999999988888888889888773321 0001 111112223467
Q ss_pred eEEEEEeCCCCEEEeecCCCeEEEEECCCCee------------------------eeeeec------------------
Q 042146 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKC------------------------LKVLPA------------------ 140 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------~~~~~~------------------ 140 (262)
|.+++|+||+.+|+..+.++++.+.+- +..+ ...|.+
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~ 201 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV 201 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence 999999999999999998998888642 1111 111111
Q ss_pred ------CCCCeeeEEEccCCCEEEEEeC---C---CeEEEEeCCC-------------------CCccEEEEEcC---CC
Q 042146 141 ------HSDPVTAIDFNRDGTMIVTSSY---D---GLYRILDAST-------------------PNGKFILVGTL---DN 186 (262)
Q Consensus 141 ------~~~~v~~~~~~~~~~~l~~~~~---d---g~i~~~d~~~-------------------~~~~~l~~~~~---dg 186 (262)
....-..++|-.||.+|++.+. . +.+++|+-.. |.|+++++... ..
T Consensus 202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 1223456888889999988874 2 5788888654 77877777653 23
Q ss_pred eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 187 TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 187 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.|.+|. ++|-.-..|.-... .....|..+.|++++..||..- .| .|.+|-..+
T Consensus 282 ~VvFfE-rNGLrhgeF~l~~~------------------~~~~~v~~l~Wn~ds~iLAv~~--~~-~vqLWt~~N 334 (928)
T PF04762_consen 282 DVVFFE-RNGLRHGEFTLRFD------------------PEEEKVIELAWNSDSEILAVWL--ED-RVQLWTRSN 334 (928)
T ss_pred EEEEEe-cCCcEeeeEecCCC------------------CCCceeeEEEECCCCCEEEEEe--cC-CceEEEeeC
Confidence 455554 23333333322110 0456789999999999999987 44 499998754
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.3e-07 Score=71.07 Aligned_cols=130 Identities=11% Similarity=0.163 Sum_probs=73.6
Q ss_pred EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC------------CCCccccCCccccc----cceeEEEEecCCC
Q 042146 27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP------------SPLQKFTGHEQGIS----DLATIRLWDVPTA 90 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~------------~~~~~~~~~~~~v~----~~~~i~v~d~~~~ 90 (262)
+-+.|||.|.||+|--.. -|.+|--++......... ..+..+......+. .-..+.|||+.+|
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 568899999999997654 477885433211111000 11111111111111 1128999999999
Q ss_pred ccceecccCC--cc-eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 91 TSLKTLIGHT--NY-VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 91 ~~~~~~~~~~--~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
...+.+.... .. -.-..|+.|++++|.-.. ..|.||+..+..++..-.-.-..|....|+|.+++||
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 9888776522 22 234689999999987665 5788898765433222212234455556666555444
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.2e-09 Score=88.56 Aligned_cols=126 Identities=11% Similarity=0.162 Sum_probs=95.2
Q ss_pred eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecC
Q 042146 9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVP 88 (262)
Q Consensus 9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~ 88 (262)
+|..++..++++.|...-+|++|+-..+.|+.|+..|.|+++++ .
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv-----------------------------------~ 1131 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNV-----------------------------------S 1131 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEc-----------------------------------c
Confidence 35567788899999999999999999999999999998887754 5
Q ss_pred CCccceecccCCcceEEEEEeCCCCEEEeecCCC--eEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146 89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE--TIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 165 (262)
+|.......+|..+|+-+.-+.+|..+++.+.-. ...+|++.+ +.+.+.+.. -.++.|+.....-+.|.....
T Consensus 1132 sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1132 SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADD 1207 (1516)
T ss_pred CccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccc
Confidence 6777778889999999998888888776554332 467898753 445555543 357788876555555555567
Q ss_pred EEEEeCCC
Q 042146 166 YRILDAST 173 (262)
Q Consensus 166 i~~~d~~~ 173 (262)
..+||+.+
T Consensus 1208 a~~YDvqT 1215 (1516)
T KOG1832|consen 1208 ALLYDVQT 1215 (1516)
T ss_pred eEEEeccc
Confidence 78888776
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=1.9e-08 Score=76.52 Aligned_cols=99 Identities=22% Similarity=0.400 Sum_probs=74.8
Q ss_pred EEEEEeCCCCEEEe---ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------
Q 042146 104 FCINFNPQSNRIVS---DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------- 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------- 173 (262)
+++.+..+...... ++....+.+|....+.+.. +-+|-+.+++++++||+++++++..|..|++-....
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 34444444444333 3444556666665555444 448999999999999999999999999999877654
Q ss_pred -------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
.++..|++|+.|++|++||+++|+++.++.
T Consensus 190 clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 466779999999999999999999887665
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=4.4e-07 Score=65.96 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=88.4
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce-ecccCCcceE
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK-TLIGHTNYVF 104 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~-~~~~~~~~v~ 104 (262)
+.+++++++++++++.+....|..|.++... ...+. ......+.-.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s---------------------------------ey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES---------------------------------EYIENIYEAPTSDHGF 207 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCcc---------------------------------ceeeeeEecccCCCce
Confidence 8899999999999999999999988765411 11111 2222334456
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCCeee-----eeeecCCCCeeeEEEccCCC--EEEEEeCCCeEEEEeCCCCCc
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCL-----KVLPAHSDPVTAIDFNRDGT--MIVTSSYDGLYRILDASTPNG 176 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~ 176 (262)
+..|+.....+|++..||++.|||++..... .+-..|++.+..+.|++.|. +|+..-.-+.+.+.|+|.-..
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 7889998999999999999999999865322 22245889999999998653 677777788999999998333
No 295
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.83 E-value=2.9e-06 Score=67.09 Aligned_cols=138 Identities=12% Similarity=0.201 Sum_probs=95.5
Q ss_pred cceEEEEEeCCCCEEEeecC----CCeEEEEECCCC--e--eeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeC
Q 042146 101 NYVFCINFNPQSNRIVSDTF----NETIRIWDIKTG--K--CLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDA 171 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~ 171 (262)
.....++++|++++|++... +|.|..|.+... + .+............++++|++++|+++. .+|.+.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 44567889999999988766 578999988753 3 3333332344567899999999988887 5889999987
Q ss_pred CC----------------------------------CCccEEEEEc-CCCeEEEEecCCCc--eee--EEeccCCceeEE
Q 042146 172 ST----------------------------------PNGKFILVGT-LDNTLRLWNYSTRK--ILK--TYSGYTNSKYCI 212 (262)
Q Consensus 172 ~~----------------------------------~~~~~l~~~~-~dg~i~i~d~~~~~--~~~--~~~~~~~~~~~~ 212 (262)
.. |+++++++.. ....|.+|++.... +.. .+..
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-------- 188 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-------- 188 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--------
Confidence 65 6777666654 33478888776544 221 1111
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
......+.++|+|++++++.... .++.|.+++++
T Consensus 189 -------------~~G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~ 222 (345)
T PF10282_consen 189 -------------PPGSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYD 222 (345)
T ss_dssp -------------STTSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEE
T ss_pred -------------ccCCCCcEEEEcCCcCEEEEecC-CCCcEEEEeec
Confidence 14566889999999999887763 57889999886
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.81 E-value=2.1e-06 Score=67.42 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=85.3
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--- 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--- 173 (262)
++...|.-..+..+++-++.|..|| .+-|+|.++++.. .+...-+.|.++..+|+|+.++.+.....+-+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 4666788888888888899999999 8999999988754 4455678899999999999999999888888888876
Q ss_pred -----------------CCccEEEEEcCCC----eEEEEecCCCceeeEE
Q 042146 174 -----------------PNGKFILVGTLDN----TLRLWNYSTRKILKTY 202 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~ 202 (262)
+++++++-+--+| .|+++|+.+++....-
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 7888999887665 6889999877765443
No 297
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.80 E-value=5.1e-06 Score=64.78 Aligned_cols=106 Identities=9% Similarity=0.020 Sum_probs=78.0
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC----------CCeEEEEECCCCeeeeeeecCCC-------
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF----------NETIRIWDIKTGKCLKVLPAHSD------- 143 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~------- 143 (262)
.|.+.|..+.+.+..+..-..+- .+ ++||++.++++.. +..|.+||+.+.+.+.++.....
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 57777888888777765433333 24 9999998877655 78999999999999988864222
Q ss_pred CeeeEEEccCCCEEEEEe-C-CCeEEEEeCCC---------CCccEEEEEcCCCeE
Q 042146 144 PVTAIDFNRDGTMIVTSS-Y-DGLYRILDAST---------PNGKFILVGTLDNTL 188 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~---------~~~~~l~~~~~dg~i 188 (262)
.-..++++|||++|++.. . +..|.+.|+.. |++..++..++++..
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~ 161 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF 161 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE
Confidence 234789999999888766 4 78999999887 677776666544433
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=7e-07 Score=74.07 Aligned_cols=134 Identities=14% Similarity=0.197 Sum_probs=100.8
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
..++|++++ +++|+-|+.+|.|++.+.+. .. .+...|...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~------------------------------------~~-~~~~~~s~~- 79 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG------------------------------------NP-KTNFDHSSS- 79 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC------------------------------------cc-ccccccccc-
Confidence 456666664 56899999999999886543 22 222233332
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC-----CCEEEEEeCCCeEEEEeCCC-----
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD-----GTMIVTSSYDGLYRILDAST----- 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~----- 173 (262)
..+|.++++++.||+|.|-.+-+.+....+. ...++.+++++|+ .+++++|+.-| +.++.-+-
T Consensus 80 -----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 80 -----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD 152 (846)
T ss_pred -----ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence 5689999999999999999988887777665 4678999999997 56899999888 77765332
Q ss_pred ---------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
-.|+++|-++.+| |++||..+++.+..++..
T Consensus 153 ~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred ceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCC
Confidence 3578888888777 899999988888777653
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.73 E-value=8e-06 Score=61.03 Aligned_cols=123 Identities=24% Similarity=0.234 Sum_probs=84.2
Q ss_pred eEEEEecCCCccceecccC--CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 TIRLWDVPTATSLKTLIGH--TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
.|..+|..+++.+....-. .....+. ..+++..+++++.++.|..||..+++.+..+.. ..++.... ...+..++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVY 80 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccc
Confidence 4566677777777665421 1111211 233567777778899999999999999888875 33322222 22455667
Q ss_pred EEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146 159 TSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 206 (262)
.++.++.+..+|..+ ..+..++++..++.|..+|+++|+.+.......
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 777788888888655 135678888889999999999999988887644
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.73 E-value=7.1e-08 Score=69.59 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=84.5
Q ss_pred cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
...|.+++-+|. ...+++|+.||.+.+||..+. ..+...++.|+.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----------------------------------~~p~S~l~ahk~ 224 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----------------------------------AMPVSLLKAHKA 224 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccc----------------------------------cchHHHHHHhhh
Confidence 345999999995 457788899999999976531 234556788999
Q ss_pred ceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeee--------cCCCCeee-EEEccCCCEEEEEeCCCeEEEEeC
Q 042146 102 YVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLP--------AHSDPVTA-IDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 102 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~-~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
+++.+-|+| ++..|+++++||.+..||..+ +.+..-. -...++.+ +...+ +--+....|.-||+
T Consensus 225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~-----ll~~~~~SinsfDV 298 (319)
T KOG4714|consen 225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITS-----LLPSRSLSINSFDV 298 (319)
T ss_pred hhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeec-----cccccceeeeeeec
Confidence 999999999 788999999999999999764 3332110 01122222 22221 00111223445555
Q ss_pred CCCCccEEEEEcCCCeEEEEe
Q 042146 172 STPNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 172 ~~~~~~~l~~~~~dg~i~i~d 192 (262)
. +..|++|+.-+.|++++
T Consensus 299 ~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 299 L---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred c---CceEEeccccceEEEec
Confidence 4 67888888888888875
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.73 E-value=3.4e-06 Score=66.59 Aligned_cols=208 Identities=16% Similarity=0.184 Sum_probs=122.7
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
.-..+..-.-++....|||.|.+|++.... .|.+| .-..+..+.
T Consensus 24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~-----------------------------------~g~~~~~l~ 67 (561)
T COG5354 24 IHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECW-----------------------------------GGPSKAKLV 67 (561)
T ss_pred ccccccccCcchhheeecCcchheehhhcc-ceEEc-----------------------------------cccchhhee
Confidence 444454466789999999999999987654 34555 434444444
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCC---------------eEEEEECCCCeeeeeeecCCCC--ee-eEEEccCCCE
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNE---------------TIRIWDIKTGKCLKVLPAHSDP--VT-AIDFNRDGTM 156 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~ 156 (262)
.+. ...|..+.|+|.+++|.+=+..+ .+.+||..++..+..+.....+ .. -+.|+-+.++
T Consensus 68 ~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y 145 (561)
T COG5354 68 RFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY 145 (561)
T ss_pred eee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh
Confidence 443 23577888888888888755433 4999999999988888765554 44 6777776665
Q ss_pred EEEEeCCCeEEEEeCCC---------------------C--CccEEEE-----EcCCCeEEEEecCCCceeeEEeccC--
Q 042146 157 IVTSSYDGLYRILDAST---------------------P--NGKFILV-----GTLDNTLRLWNYSTRKILKTYSGYT-- 206 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~---------------------~--~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~-- 206 (262)
.+-- ....++++++.. | ++..|+. ....+.+++|.+..+..+.+-.-..
T Consensus 146 ~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~ 224 (561)
T COG5354 146 VARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS 224 (561)
T ss_pred hhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec
Confidence 5443 344577787522 1 2223332 2345667777776554443221100
Q ss_pred ---------CceeEEEEE--E-----------------ecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 207 ---------NSKYCISST--F-----------------SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 207 ---------~~~~~~~~~--~-----------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
+...++... + ...+......-.++|...+|.|.++.+++.+.-.+-.+.+++
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 001111100 0 001111111247899999999999887766521466677776
Q ss_pred ecc
Q 042146 259 QEK 261 (262)
Q Consensus 259 ~~~ 261 (262)
+..
T Consensus 305 lr~ 307 (561)
T COG5354 305 LRG 307 (561)
T ss_pred ccc
Confidence 653
No 302
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.72 E-value=1.2e-05 Score=72.18 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=92.3
Q ss_pred ceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecC-----------------CCCeeeEEEcc-CCCEEEEEeC
Q 042146 102 YVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAH-----------------SDPVTAIDFNR-DGTMIVTSSY 162 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~ 162 (262)
....++++++++.|+++. ..+.|+++|+.++. +.++.+- -..-..++++| ++.++++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 356889999888665544 45689999987765 3333110 01236799999 5666677777
Q ss_pred CCeEEEEeCCC----------------------------------CCcc-EEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146 163 DGLYRILDAST----------------------------------PNGK-FILVGTLDNTLRLWNYSTRKILKTYSGYTN 207 (262)
Q Consensus 163 dg~i~~~d~~~----------------------------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 207 (262)
++.|++||... ++++ .+++.+.++.|++||+.++.......+..
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~- 782 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP- 782 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc-
Confidence 88898888632 4555 44555667899999988765322111100
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
........+...++......-.....++++|+|.++++-+ .++.|++|+.+.
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs--~N~rIrviD~~t 834 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS--YNHKIKKLDPAT 834 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC--CCCEEEEEECCC
Confidence 0000000000000000000112346899999999888877 789999999753
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=3e-07 Score=68.23 Aligned_cols=75 Identities=9% Similarity=0.237 Sum_probs=56.7
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-----eeeeeecCC------------CCeeeEEEccCC--CEEEE
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-----CLKVLPAHS------------DPVTAIDFNRDG--TMIVT 159 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 159 (262)
....|+++.|...|.++++|...|.|.+|.-+... ...+++.|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999754322 223344443 357888887644 47888
Q ss_pred EeCCCeEEEEeCCC
Q 042146 160 SSYDGLYRILDAST 173 (262)
Q Consensus 160 ~~~dg~i~~~d~~~ 173 (262)
.+.|++|++|.+..
T Consensus 105 stNdktiKlWKiye 118 (460)
T COG5170 105 STNDKTIKLWKIYE 118 (460)
T ss_pred ecCCceeeeeeeec
Confidence 89999999999765
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.5e-06 Score=72.15 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=97.3
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCC------------CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQ------------SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID 149 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 149 (262)
|.+.|..+.+.++.+..|+..|+.+.|.|- .-+++++...|.|.+||...+..+..+..|..++.+++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 566677888889999999999999999872 12477888889999999999988888888999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 150 FNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
|-|... ....+|++-.....+.+|+..+|+.........+...|..+-+.......+.+.++
T Consensus 117 W~~~rd------------------~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 117 WVPARD------------------DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred eeeccC------------------cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 977321 01133444455567788888888887777664444444444444444444445555
Q ss_pred ceEEEEEcC
Q 042146 230 PVISVASHP 238 (262)
Q Consensus 230 ~v~~~~~~p 238 (262)
.+..+.+.+
T Consensus 179 ~vl~~~~l~ 187 (1062)
T KOG1912|consen 179 FVLSCKDLG 187 (1062)
T ss_pred eEEEEeccC
Confidence 555555543
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=1.5e-05 Score=59.59 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=102.2
Q ss_pred cCCCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCccc-cCCccccc---cceeEEEEecCCCccceec-ccCC---cce
Q 042146 33 HDGRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQKF-TGHEQGIS---DLATIRLWDVPTATSLKTL-IGHT---NYV 103 (262)
Q Consensus 33 ~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~-~~~~~~v~---~~~~i~v~d~~~~~~~~~~-~~~~---~~v 103 (262)
+++..+++++.++.|..||..+.+.. ........... ......+. ..+.+..+|..+++.+... .... ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 35667777789999999998665321 11111111111 11111111 1237999999999988873 3221 112
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe-----------eeEEEccCCCEEEEEeCCCe-EEEEeC
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV-----------TAIDFNRDGTMIVTSSYDGL-YRILDA 171 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~dg~-i~~~d~ 171 (262)
..+.....+..++++..++.|..+|+++|+.+.......... ..+.+. ++ .++.++.++. +.+ |+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ET
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-EC
Confidence 233333348888888889999999999999988886644221 122222 33 6666666664 444 65
Q ss_pred CC-----------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146 172 ST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 172 ~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
.+ ..+..|+.++.++.|..||+++|+.+..
T Consensus 191 ~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 54 5667788777999999999999987653
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=5.4e-08 Score=81.52 Aligned_cols=110 Identities=25% Similarity=0.405 Sum_probs=89.4
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEe
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILD 170 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d 170 (262)
.+.+..|....+|++|+.+.+.|+.|+..|.|+++++.+|.......+|.++|+-+.=+.+|..+++.+.-. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 345667888999999999999999999999999999999999999999999999999888998777665433 467898
Q ss_pred CCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 171 AST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 171 ~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
+.+ ..-..-+.|+......+||+.++.++.++
T Consensus 1174 ~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred cccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 876 11223345565667889999999888774
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.6e-07 Score=70.38 Aligned_cols=192 Identities=10% Similarity=0.097 Sum_probs=126.8
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
-|...|+-+.- ...+++++++.||.++.|.-.. +..-+.+..+..|.
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~--------------------------------isGvEfVKhFraHL 53 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSR--------------------------------ISGVEFVKHFRAHL 53 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCC--------------------------------ccceeehhhhHHHH
Confidence 36666766543 4567999999999999993211 01123445567788
Q ss_pred cceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecC--CCCeeeEEEccC-C-CEEEE-EeCCCeEEEEeCCC-
Q 042146 101 NYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAH--SDPVTAIDFNRD-G-TMIVT-SSYDGLYRILDAST- 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~-~-~~l~~-~~~dg~i~~~d~~~- 173 (262)
..|.+++.+-++.++.+.+. |..++++|+++-..+..++.. .+.+ +...+|. . ..+++ ...++.+.++|-+.
T Consensus 54 ~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d 132 (558)
T KOG0882|consen 54 GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGD 132 (558)
T ss_pred HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCC
Confidence 99999999999999999887 999999999876655443321 2222 1222331 1 13333 34678899998665
Q ss_pred ---------------------CCccEEEEEcCCCeEEEEecCC------CceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 174 ---------------------PNGKFILVGTLDNTLRLWNYST------RKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 174 ---------------------~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
+.+..+++....|-|.-|..+. .+....++... +-.-+.-
T Consensus 133 ~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-------------dLy~f~K 199 (558)
T KOG0882|consen 133 FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-------------DLYGFPK 199 (558)
T ss_pred cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc-------------hhhcccc
Confidence 5667788888889999998762 11111111100 0000111
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+....++.|+|++..+.+-+ .|..|+++....
T Consensus 200 ~Kt~pts~Efsp~g~qistl~--~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLN--PDRKVRGFVFKT 232 (558)
T ss_pred cccCccceEEccccCcccccC--cccEEEEEEecc
Confidence 566788999999999999999 899999998764
No 308
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.1e-05 Score=66.24 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=85.0
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce-ecccCC
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK-TLIGHT 100 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~-~~~~~~ 100 (262)
|...|.--++...+++++.|+.-|.+.+|+-.. +.... ...+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-----------------------------------~~~~~~~~~~~~ 76 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-----------------------------------GEMRKLKNEGAT 76 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCc-----------------------------------hhhhcccccCcc
Confidence 445566566677889999999999998885422 11111 111233
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee-----ee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK-----VL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+.+..+.++++..++|+|+..|.|.++-++.+.+.. .. +.|...|++++|++++..+++|...|+|.+-.+..
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 456667788888999999999999999887643211 11 23678999999999999999999999988776554
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.59 E-value=3.3e-07 Score=73.62 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=62.3
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
.....+.|.+++|+...++.|+.||.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46678999999999999999999999999998766332 223455678999999999999999999999999764
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=3.8e-05 Score=62.21 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCE-EEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCC--CeEEEEeCCC-
Q 042146 102 YVFCINFNPQSNR-IVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYD--GLYRILDAST- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--g~i~~~d~~~- 173 (262)
......|+|+|+. ++..+. +..|.++|+.+++..... ...+......|+|||+.++.. +.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 554333 357999999888754443 345556778899999866543 333 4677778654
Q ss_pred ------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146 174 ------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI 232 (262)
Q Consensus 174 ------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (262)
|+|+.|+..+. .+ .|++.|+.+++..+... ... .
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-----------------------~g~--~ 322 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-----------------------HGK--N 322 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----------------------CCC--c
Confidence 67765555542 22 56667776665533221 111 1
Q ss_pred EEEEcCCCCeEEEee
Q 042146 233 SVASHPAKNIIASGA 247 (262)
Q Consensus 233 ~~~~~p~~~~l~~~~ 247 (262)
...|+|+|+.|+..+
T Consensus 323 ~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 323 NSSVSTYKNYIVYSS 337 (419)
T ss_pred CceECCCCCEEEEEE
Confidence 237999999887776
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=0.00015 Score=55.08 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=109.5
Q ss_pred EEEEcc-CCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccc--------------cccceeEEEEecC-CC
Q 042146 28 YVKFSH-DGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQG--------------ISDLATIRLWDVP-TA 90 (262)
Q Consensus 28 ~~~~~~-~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--------------v~~~~~i~v~d~~-~~ 90 (262)
.++.+| ....++.+-.-| ...+||..+...........-.-|.+|... -..-+.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 456666 344455555444 355666665544333333333334333211 1222389999998 56
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecC------------------CCeEEEEECCCCeeeee--e--ecCCCCeeeE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTF------------------NETIRIWDIKTGKCLKV--L--PAHSDPVTAI 148 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~vwd~~~~~~~~~--~--~~~~~~v~~~ 148 (262)
+.+.++..|.-.-..+.+.||++.|+++-. +-.+...|.++++.+.. + ..|...|..+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 677788877767778889999977766431 23466667778877666 3 2367789999
Q ss_pred EEccCCCEEEEEeCCCe-------EEEEeCCC-------------------------CCccEEE-EEcCCCeEEEEecCC
Q 042146 149 DFNRDGTMIVTSSYDGL-------YRILDAST-------------------------PNGKFIL-VGTLDNTLRLWNYST 195 (262)
Q Consensus 149 ~~~~~~~~l~~~~~dg~-------i~~~d~~~-------------------------~~~~~l~-~~~~dg~i~i~d~~~ 195 (262)
++.++|..++..-..|. +.+++... .++.+++ ++-.-+.+.+||..+
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 99998876665543332 33333222 4565554 444667899999999
Q ss_pred CceeeEEec
Q 042146 196 RKILKTYSG 204 (262)
Q Consensus 196 ~~~~~~~~~ 204 (262)
++.+....-
T Consensus 249 g~~~~~~~l 257 (305)
T PF07433_consen 249 GRLLGSVPL 257 (305)
T ss_pred CCEeecccc
Confidence 998877653
No 312
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.56 E-value=4.7e-08 Score=78.93 Aligned_cols=185 Identities=16% Similarity=0.268 Sum_probs=121.4
Q ss_pred cCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 23 LRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 23 ~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
...+.|++++-+ ...+++|..+|.|-+-.+.... .......+++.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---------------------------------dSs~E~tp~~a 102 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---------------------------------DSSAEVTPGYA 102 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc---------------------------------cccceeccccc
Confidence 445677776543 3467778888887776543210 01112345677
Q ss_pred cceEEEEEeC-CCCEEEeec----CCCeEEEEECCCC--eee--eeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 101 NYVFCINFNP-QSNRIVSDT----FNETIRIWDIKTG--KCL--KVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 101 ~~v~~~~~~~-~~~~l~~~~----~dg~i~vwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
.+.++++|++ |.+.||+|- .|..+.|||+.++ .+. ..+.. ......+++|..+.+++.+|...+.+.++|
T Consensus 103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence 8899999998 667777764 3567999999876 221 12222 234567889988889999999999999999
Q ss_pred CCC-------------------C-CccEEEEEcCCCeEEEEe-cCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146 171 AST-------------------P-NGKFILVGTLDNTLRLWN-YSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHR 228 (262)
Q Consensus 171 ~~~-------------------~-~~~~l~~~~~dg~i~i~d-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (262)
+|. | .++|+++-. ||.|.+|| .++- .++..+....+. ..
T Consensus 183 lRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~------------------~~ 243 (783)
T KOG1008|consen 183 LRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENK------------------KP 243 (783)
T ss_pred hhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCC------------------cc
Confidence 994 4 567777665 99999999 3332 222222211111 23
Q ss_pred cceEEEEEcCCCC-eEEEeeecCCCcEEEEeec
Q 042146 229 DPVISVASHPAKN-IIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 229 ~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~ 260 (262)
+.+..++|+|... .+++... ..++|+++++.
T Consensus 244 ~~l~~~aycPtrtglla~l~R-dS~tIrlydi~ 275 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSR-DSITIRLYDIC 275 (783)
T ss_pred cceeeEEeccCCcchhhhhcc-CcceEEEeccc
Confidence 3588999999754 4555554 36789998874
No 313
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=6.9e-07 Score=73.47 Aligned_cols=137 Identities=14% Similarity=0.189 Sum_probs=100.0
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---------------eeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---------------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
......|++|+....++++|+.||.+++..+.+.. .-+++.+|+..|.-+.|..+.+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568899999999999999999999999876431 224567899999999999999999999999
Q ss_pred CeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCcee-eEEeccCCceeEEEEEEecCC
Q 042146 164 GLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTN 220 (262)
Q Consensus 164 g~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 220 (262)
|.|.+|-+-. .+|..++..-.||.|.+=.+...+.- +.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL------------------ 154 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL------------------ 154 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc------------------
Confidence 9999998765 45555555555665554433321110 111
Q ss_pred CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.......+.|+||.+.+..+- .+|.+.++|.+.
T Consensus 155 ------kg~~l~hv~ws~D~~~~Lf~~--ange~hlydnqg 187 (1189)
T KOG2041|consen 155 ------KGQLLAHVLWSEDLEQALFKK--ANGETHLYDNQG 187 (1189)
T ss_pred ------chheccceeecccHHHHHhhh--cCCcEEEecccc
Confidence 112344788999988887776 788899888653
No 314
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.54 E-value=3.9e-05 Score=61.26 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=83.1
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC-CCCCCCC----cc--ccCCccccccceeEEEEecCC---C----
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD-STPPSPL----QK--FTGHEQGISDLATIRLWDVPT---A---- 90 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~----~~--~~~~~~~v~~~~~i~v~d~~~---~---- 90 (262)
.|+.+.|.++..-|++|...|.|.||.....+... ...+... .. ...... .+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPG--------KLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS---------SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCc--------ceEEehhhCCccccc
Confidence 58899999998899999999999999876644332 1111100 01 111111 1223221 1
Q ss_pred --ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee--ec------CCCCeeeEEEcc-----CC-
Q 042146 91 --TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL--PA------HSDPVTAIDFNR-----DG- 154 (262)
Q Consensus 91 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~------~~~~v~~~~~~~-----~~- 154 (262)
.+...+....++|++++.+ +=.+++.|+.+|.+.|.|+|....+..- .. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 1222334457899999997 6668999999999999999877766542 11 234688888863 33
Q ss_pred --CEEEEEeCCCeEEEEeCC
Q 042146 155 --TMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 155 --~~l~~~~~dg~i~~~d~~ 172 (262)
-.|++|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 378899999999999876
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.9e-05 Score=64.92 Aligned_cols=120 Identities=18% Similarity=0.350 Sum_probs=83.2
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCC--
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ-- 111 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-- 111 (262)
+|.+++|+|.||+|.|-.+.+ .+...++ ..+.++.+++++|+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~-----------------------------------~~~~~~~-df~rpiksial~Pd~~ 125 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFT-----------------------------------DDEITQY-DFKRPIKSIALHPDFS 125 (846)
T ss_pred CCceEEEecCCCcEEEeeccC-----------------------------------CccceeE-ecCCcceeEEeccchh
Confidence 499999999999998875432 2222222 23567889999997
Q ss_pred ---CCEEEeecCCCeEEEEECCC--CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------
Q 042146 112 ---SNRIVSDTFNETIRIWDIKT--GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------- 173 (262)
Q Consensus 112 ---~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------- 173 (262)
.+.+++|+..| +.++.-+- .+....+....++|.++.|. |++++-++.+| |++||+..
T Consensus 126 ~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 126 RQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS 201 (846)
T ss_pred hhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCC
Confidence 56799999888 77775321 11111344557899999997 77888888766 79999776
Q ss_pred ------------CCccEEEEEcCCCeEEEEecC
Q 042146 174 ------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 174 ------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
.+...|+.| +..+|+|..++
T Consensus 202 ~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence 244555554 44568888777
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.48 E-value=8.2e-05 Score=60.10 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=78.7
Q ss_pred CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------ 173 (262)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------ 173 (262)
+..++.++.+|.+..+|+.+++.+...... ....+. ..+..++.++.+|.+..+|..+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 556777778899999999999887765321 111222 2355677777778777777654
Q ss_pred -CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE-EEEEcCCCCeEEEeeecCC
Q 042146 174 -PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI-SVASHPAKNIIASGALDND 251 (262)
Q Consensus 174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~d 251 (262)
..+.+++.++.+|.++..|..+|+.+...+.. ...+. ...+ .+..|+.++ .|
T Consensus 332 ~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~----------------------~~~~~s~P~~--~~~~l~v~t--~~ 385 (394)
T PRK11138 332 VLYNGYLVVGDSEGYLHWINREDGRFVAQQKVD----------------------SSGFLSEPVV--ADDKLLIQA--RD 385 (394)
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC----------------------CCcceeCCEE--ECCEEEEEe--CC
Confidence 13567888899999999999999988776531 11111 1112 244677777 88
Q ss_pred CcEEEEee
Q 042146 252 RTMKIWTQ 259 (262)
Q Consensus 252 ~~i~iw~~ 259 (262)
|.|..++.
T Consensus 386 G~l~~~~~ 393 (394)
T PRK11138 386 GTVYAITR 393 (394)
T ss_pred ceEEEEeC
Confidence 99988765
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=4.6e-05 Score=66.54 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=112.4
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
..|.++.|..+++-++.+..+|.|.+-|.+. .. +.....-...|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et-----------------------------------~~-~eivg~vd~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET-----------------------------------LE-LEIVGNVDNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc-----------------------------------cc-eeeeeeccCce
Confidence 5788888888888888888888877764432 11 11112234679
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEEC----CCC-------------------eeeeeeecC-------------------
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDI----KTG-------------------KCLKVLPAH------------------- 141 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~-------------------~~~~~~~~~------------------- 141 (262)
.+++|+||+..++..+..+++.+-+- -.. +....+.+.
T Consensus 113 ~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 113 SAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred EEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccch
Confidence 99999999999998888888776532 111 111122110
Q ss_pred --CCCeeeEEEccCCCEEEEEe----CC-CeEEEEeCCC-------------------CCccEEEEEc---CCCeEEEEe
Q 042146 142 --SDPVTAIDFNRDGTMIVTSS----YD-GLYRILDAST-------------------PNGKFILVGT---LDNTLRLWN 192 (262)
Q Consensus 142 --~~~v~~~~~~~~~~~l~~~~----~d-g~i~~~d~~~-------------------~~~~~l~~~~---~dg~i~i~d 192 (262)
.+.=+.+.|--||.++++.. .+ +.|++||... |.|..+++-. .|+.|.+|.
T Consensus 193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred hhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence 01124588988999988843 23 7899999763 6666666542 344566665
Q ss_pred cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE---eeecCCCcEEEEeecc
Q 042146 193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS---GALDNDRTMKIWTQEK 261 (262)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~---~~~d~d~~i~iw~~~~ 261 (262)
.. |-.-..|.-..+. ...+|..++|+.++..||+ .. +...|++|-+.+
T Consensus 273 rN-GL~hg~f~l~~p~------------------de~~ve~L~Wns~sdiLAv~~~~~--e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 273 RN-GLRHGEFVLPFPL------------------DEKEVEELAWNSNSDILAVVTSNL--ENSLVQLWTTGN 323 (1265)
T ss_pred cC-CccccccccCCcc------------------cccchheeeecCCCCceeeeeccc--ccceEEEEEecC
Confidence 32 2222222110000 3345899999999999998 44 455699998754
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=1.1e-06 Score=74.05 Aligned_cols=136 Identities=13% Similarity=0.253 Sum_probs=96.7
Q ss_pred eeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146 8 ESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV 87 (262)
Q Consensus 8 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~ 87 (262)
++..+++.++++.+|++.|.++.. .|+.|+++|..+...-..++ .-|+|||+
T Consensus 202 rD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D--------------------------~FvkVYDL 253 (1118)
T KOG1275|consen 202 RDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD--------------------------PFVKVYDL 253 (1118)
T ss_pred ecCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc--------------------------chhhhhhh
Confidence 334567788899999998866554 67888888876543322221 14889999
Q ss_pred CCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC---CC-eeeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146 88 PTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK---TG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
+..+.+..+.-+.++ .-+.|+| -...+++++..|...+-|.. +. .-+..+..-...+..++++++++.|+.+..
T Consensus 254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 887777666555444 5678888 45678888889999998832 22 112233333456999999999999999999
Q ss_pred CCeEEEEeCC
Q 042146 163 DGLYRILDAS 172 (262)
Q Consensus 163 dg~i~~~d~~ 172 (262)
+|.|.+|--+
T Consensus 333 ~g~v~~wa~~ 342 (1118)
T KOG1275|consen 333 EGHVNLWADR 342 (1118)
T ss_pred cCcEeeecCC
Confidence 9999999743
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.40 E-value=0.00035 Score=52.08 Aligned_cols=188 Identities=11% Similarity=0.156 Sum_probs=105.7
Q ss_pred eecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 17 QTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
+.+.+-...+..++|+|+.+ ++++....+.|...+. +++.+..
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~------------------------------------~G~vlr~ 58 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL------------------------------------DGKVLRR 58 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET------------------------------------T--EEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC------------------------------------CCCEEEE
Confidence 45566667799999999755 6666677777655543 2444444
Q ss_pred cccC-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCC------eeeeee-----ecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 96 LIGH-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG------KCLKVL-----PAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 96 ~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
+.-. .+....|++..++.++++--.++.+.++++... .....+ ..++..+-.++|.|.++.|+.+-..
T Consensus 59 i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~ 138 (248)
T PF06977_consen 59 IPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER 138 (248)
T ss_dssp EE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES
T ss_pred EeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC
Confidence 3222 245778888877777777666889999988322 111112 1245678999999987777777666
Q ss_pred CeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeE
Q 042146 164 GLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211 (262)
Q Consensus 164 g~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 211 (262)
.-..+|.+.. ..+++++....+..|.++| ..|+++..+.-..... .
T Consensus 139 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-g 216 (248)
T PF06977_consen 139 KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-G 216 (248)
T ss_dssp SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G
T ss_pred CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-C
Confidence 5555554432 4577888888889999999 5688776665321100 0
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
+ ...-.....|+|.|+|.+.+++ +-+..++|
T Consensus 217 l------------~~~~~QpEGIa~d~~G~LYIvs---EpNlfy~f 247 (248)
T PF06977_consen 217 L------------SKDIPQPEGIAFDPDGNLYIVS---EPNLFYRF 247 (248)
T ss_dssp -------------SS---SEEEEEE-TT--EEEEE---TTTEEEEE
T ss_pred c------------ccccCCccEEEECCCCCEEEEc---CCceEEEe
Confidence 0 0011346799999999766665 55655554
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=0.00038 Score=52.90 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=61.2
Q ss_pred eEEEEecCCCccceecccCCcce--EEEEEeCCCCEEEee-----cCCCeEEEEECC-CCeeeeeeecCCCCeeeEEEcc
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYV--FCINFNPQSNRIVSD-----TFNETIRIWDIK-TGKCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~-----~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~ 152 (262)
...+||..+++....+....+.- -.-.|+|||++|++. ...|.|-|||.. +-+.+.++..|.-.-..+.+.|
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 57889999988776654322211 135799999999975 345889999998 6677888887777778899999
Q ss_pred CCCEEEEEe
Q 042146 153 DGTMIVTSS 161 (262)
Q Consensus 153 ~~~~l~~~~ 161 (262)
||+.|+++-
T Consensus 109 DG~tLvVAN 117 (305)
T PF07433_consen 109 DGETLVVAN 117 (305)
T ss_pred CCCEEEEEc
Confidence 998777763
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.4e-05 Score=64.35 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=102.5
Q ss_pred EEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc-eEEEEE
Q 042146 30 KFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY-VFCINF 108 (262)
Q Consensus 30 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~ 108 (262)
.|++.+..++.|+.+|.|.+.+- .-+.++.++.+... |..+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~------------------------------------s~~~~~~fqa~~~siv~~L~~ 73 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS------------------------------------SFQLIRGFQAYEQSIVQFLYI 73 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc------------------------------------cceeeehheecchhhhhHhhc
Confidence 36788889999999999877742 11222444544444 444444
Q ss_pred eCCCCEEEeecCCC-----eEEEEECCCC------eeee--eeec-----CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 109 NPQSNRIVSDTFNE-----TIRIWDIKTG------KCLK--VLPA-----HSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 109 ~~~~~~l~~~~~dg-----~i~vwd~~~~------~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..+.++|++.+.|+ .|++|+++.. +++. .+.. ...++.+++.+.+-+.++.|-.+|.|..+.
T Consensus 74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 44456777766554 5999999643 2331 1112 245789999999988999999999999885
Q ss_pred CCC------------------------CCccE-EEEEcCCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCCeeE
Q 042146 171 AST------------------------PNGKF-ILVGTLDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYI 224 (262)
Q Consensus 171 ~~~------------------------~~~~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
-.- .++.. +.+++ ...|.+|.+....+ ...+..
T Consensus 154 GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~-------------------- 212 (933)
T KOG2114|consen 154 GDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDN-------------------- 212 (933)
T ss_pred CcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeecc--------------------
Confidence 322 22222 22222 23466666663221 222222
Q ss_pred EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 225 ~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...+.|.++++....+++++ +..+.+|+.+
T Consensus 213 --~G~~lnCss~~~~t~qfIca~---~e~l~fY~sd 243 (933)
T KOG2114|consen 213 --NGISLNCSSFSDGTYQFICAG---SEFLYFYDSD 243 (933)
T ss_pred --CCccceeeecCCCCccEEEec---CceEEEEcCC
Confidence 666777888877666555554 3466766654
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.34 E-value=7.2e-05 Score=60.62 Aligned_cols=127 Identities=10% Similarity=0.105 Sum_probs=79.2
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe-CCC----
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD-AST---- 173 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d-~~~---- 173 (262)
.......+.++|+++.++++ .+|.-.+|.....+... .+.-..++|.+. ..+++-...++|.++. +..
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence 33457789999999999884 47888888744333322 233467889984 4577777788999963 222
Q ss_pred -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146 174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI 242 (262)
Q Consensus 174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 242 (262)
-.|..|...+. +.|.+||..+++.++.+.. .+|..+.|++++.+
T Consensus 104 ~i~~~~~~~~If~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v------------------------~~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 104 SIKLPFSVEKIFGGNLLGVKSS-DFICFYDWETGKLIRRIDV------------------------SAVKYVIWSDDGEL 158 (443)
T ss_dssp ----SS-EEEEE-SSSEEEEET-TEEEEE-TTT--EEEEESS-------------------------E-EEEEE-TTSSE
T ss_pred EEcCCcccceEEcCcEEEEECC-CCEEEEEhhHcceeeEEec------------------------CCCcEEEEECCCCE
Confidence 12566666654 4899999999999999863 24899999999999
Q ss_pred EEEeeecCCCcEEEEeec
Q 042146 243 IASGALDNDRTMKIWTQE 260 (262)
Q Consensus 243 l~~~~~d~d~~i~iw~~~ 260 (262)
++..+ +..+.|.+.+
T Consensus 159 val~t---~~~i~il~~~ 173 (443)
T PF04053_consen 159 VALVT---KDSIYILKYN 173 (443)
T ss_dssp EEEE----S-SEEEEEE-
T ss_pred EEEEe---CCeEEEEEec
Confidence 99987 4478887764
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=2.9e-06 Score=68.41 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=59.8
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
..+..|.|++++|+...|+.|+.||.|.+||... + +..+....
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-----------------------------------~--~t~~~ka~ 299 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-----------------------------------G--VTLLAKAE 299 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCC-----------------------------------C--eeeeeeec
Confidence 4678899999999999999999999999996532 1 11122233
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKT 131 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 131 (262)
-..+.++|||+|..+++|+..|.+.+||+.-
T Consensus 300 ~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 300 FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4578899999999999999999999999853
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0002 Score=60.54 Aligned_cols=179 Identities=13% Similarity=0.221 Sum_probs=107.8
Q ss_pred CCCCceeeec-ccccceecccCcCc-eEEEEEccCCCeEEEecCCC-----eEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 2 SSDRSLESFR-PYTLTQTLNGHLRA-VSYVKFSHDGRLLTSSSAEK-----TLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~-~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
+.||.+..+. .++..+.++++... |.-+....+.++|++.+.|+ .|++|+++....-.. +.
T Consensus 42 t~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--P~---------- 109 (933)
T KOG2114|consen 42 TADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--PQ---------- 109 (933)
T ss_pred eccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--cc----------
Confidence 3578888886 45666889999888 44443333346888877765 488888865321110 10
Q ss_pred ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC----CCeeeeeeecCCCCeeeEEE
Q 042146 75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK----TGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~ 150 (262)
.+...+++-.. .+....++.+++++.+-+.+++|-.+|.|..+.-. .+...........+|+.+.+
T Consensus 110 ---c~~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 110 ---CLYEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred ---eeeeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 00011222211 11245678999999999999999999999998531 11112222234679999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC--------------------CCccE-EEEEcCCCeEEEEecCCCceeeEEe
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST--------------------PNGKF-ILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
..++..++.+..-..|.+|.+.. .++.. +++++ +..+.+|+.....+...+.
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 98887633334445567776553 12222 33333 3458888877666666665
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.32 E-value=1.8e-06 Score=43.87 Aligned_cols=38 Identities=39% Similarity=0.597 Sum_probs=33.9
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEee
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYS 51 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~ 51 (262)
++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45567778999999999999999999999999999995
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.28 E-value=0.00032 Score=56.73 Aligned_cols=168 Identities=9% Similarity=0.015 Sum_probs=98.4
Q ss_pred CCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCcc---ccCCcccc-ccceeEEEEecCCCccceecccCCcceE-EEEE
Q 042146 35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQK---FTGHEQGI-SDLATIRLWDVPTATSLKTLIGHTNYVF-CINF 108 (262)
Q Consensus 35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~---~~~~~~~v-~~~~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~ 108 (262)
+..++.++.+|.+.-+|.++.+.. .......... +....--+ ...+.+..+|.++++.+........... ...-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 456777888999999998765432 1111111100 00000000 1123688889999988876653211100 0001
Q ss_pred eC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-------CeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC----
Q 042146 109 NP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-------PVTAIDFNR--DGTMIVTSSYDGLYRILDAST---- 173 (262)
Q Consensus 109 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~---- 173 (262)
+| .+..++.++.+|.+..+|.++++.+........ ....+.-+| .+..++.++.+|.+..+|..+
T Consensus 200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred CCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 22 234567778899999999999987766532110 011122233 345677777888888888765
Q ss_pred ------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
..+..++.++.+|.+..+|..+|+.+...
T Consensus 280 W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 23466777888999999999999876544
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.24 E-value=0.00031 Score=44.71 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=55.1
Q ss_pred eEEEEEeC-CC---CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146 103 VFCINFNP-QS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF 178 (262)
Q Consensus 103 v~~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (262)
|++|++.. ++ +.|++|+.|..|++|+ ....+.++.. .+.|++++-... ..|+.+..+|+|-+|+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~------- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR------- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC-------
Confidence 56777765 22 5799999999999997 3466777764 566788877655 56888888888888753
Q ss_pred EEEEcCCCeEEEEecCCC
Q 042146 179 ILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 179 l~~~~~dg~i~i~d~~~~ 196 (262)
..++|.+++.
T Consensus 71 --------~~RlWRiKSK 80 (111)
T PF14783_consen 71 --------SQRLWRIKSK 80 (111)
T ss_pred --------cceeeeeccC
Confidence 4678877643
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00029 Score=58.57 Aligned_cols=127 Identities=11% Similarity=0.179 Sum_probs=85.7
Q ss_pred EeCCCCEEEee-cCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC---------------eEEEEeC
Q 042146 108 FNPQSNRIVSD-TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG---------------LYRILDA 171 (262)
Q Consensus 108 ~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~~~d~ 171 (262)
+.|||+.+... -..+.+.+.|.++.+...++.-. +....++++|+|+++++.+.+. .+..++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34466555332 23466888888887777776543 3447789999999988886321 2333333
Q ss_pred CC-----CCccEEEEEcCCCeEEEEecCC-----CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146 172 ST-----PNGKFILVGTLDNTLRLWNYST-----RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN 241 (262)
Q Consensus 172 ~~-----~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 241 (262)
.. ++|++...+ ++.|.+.|.++ .+.+..++ -......+.++|||+
T Consensus 279 ~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-----------------------VGKsPHGV~vSPDGk 333 (635)
T PRK02888 279 ARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-----------------------VPKNPHGVNTSPDGK 333 (635)
T ss_pred HHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-----------------------CCCCccceEECCCCC
Confidence 32 566666653 56788999887 34555554 445677899999999
Q ss_pred eEEEeeecCCCcEEEEeecc
Q 042146 242 IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 242 ~l~~~~~d~d~~i~iw~~~~ 261 (262)
++++++. .+.+|.|.|+.+
T Consensus 334 ylyVank-lS~tVSVIDv~k 352 (635)
T PRK02888 334 YFIANGK-LSPTVTVIDVRK 352 (635)
T ss_pred EEEEeCC-CCCcEEEEEChh
Confidence 9988875 488999999864
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.21 E-value=6.8e-05 Score=64.29 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=84.9
Q ss_pred cCCCeEEEEECCCCeeeeeeecCCCC-eeeEEEcc-----CCCEEEEEeCCCeEEEEeCCC-------------------
Q 042146 119 TFNETIRIWDIKTGKCLKVLPAHSDP-VTAIDFNR-----DGTMIVTSSYDGLYRILDAST------------------- 173 (262)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~------------------- 173 (262)
.....|+-.|++.|+.+.++..|... |..++=.. +...-+.|-.+..+..||.|.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 45678999999999999999887654 55443221 234567788888999999886
Q ss_pred -----CCccEEEEEcCCCeEEEEecCCCcee-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 174 -----PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 174 -----~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
....+||+|+.+|.||+||-- |+.. ..+++ -..+|..|..+.||++|++.+
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~----------------------lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPG----------------------LGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCC----------------------CCCCeeEEEecCCCcEEEEee
Confidence 345689999999999999943 3222 22222 678999999999999988876
Q ss_pred ecCCCcEEEEee
Q 042146 248 LDNDRTMKIWTQ 259 (262)
Q Consensus 248 ~d~d~~i~iw~~ 259 (262)
+..|.+.+.
T Consensus 638 ---~tyLlLi~t 646 (794)
T PF08553_consen 638 ---KTYLLLIDT 646 (794)
T ss_pred ---cceEEEEEE
Confidence 456777664
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.00014 Score=59.07 Aligned_cols=212 Identities=14% Similarity=0.125 Sum_probs=98.8
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC-Cccccc-cceeEEEEecCCCccceeccc
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG-HEQGIS-DLATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~i~v~d~~~~~~~~~~~~ 98 (262)
...-....+.++|+|+++++++ ||.-.|+................ .+.+ ..-.+. .-..|.++.--+.+....++.
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~-vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSF-VWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEE-EE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCceeEE-EEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 3445578999999999988855 67777775322111110000000 0111 000000 011455542222222222221
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----- 173 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 173 (262)
. ..+..|-. |.+|+..+.+ .|.+||+++++.++.+... +|..+.|++++.+++..+.+ .+.+++...
T Consensus 108 ~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 108 P-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred C-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence 1 12333322 8888777644 8999999999999998643 48999999999999888755 455554332
Q ss_pred -------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146 174 -------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239 (262)
Q Consensus 174 -------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 239 (262)
.. ...+-+|..++.+.+|-..+ +.-. +.+.+.. .+..-+.++.=+...|.
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~~--------------~i~~ld~~~yllgy~~~ 243 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY-LVNGETG--------------IIAHLDKPLYLLGYLPK 243 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE-EETTEEE--------------EEEE-SS--EEEEEETT
T ss_pred ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE-EEcCCcc--------------eEEEcCCceEEEEEEcc
Confidence 11 23445556666666776544 3333 3321111 11113556667777887
Q ss_pred CCeEEEeeecCCCcEEEEeec
Q 042146 240 KNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 240 ~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+.+.... .|+.|..+.++
T Consensus 244 ~~~ly~~D--r~~~v~~~~ld 262 (443)
T PF04053_consen 244 ENRLYLID--RDGNVISYELD 262 (443)
T ss_dssp TTEEEEE---TT--EEEEE--
T ss_pred CCEEEEEE--CCCCEEEEEEC
Confidence 77888877 78888877664
No 331
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.1e-05 Score=65.54 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=73.0
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
-...|.-+.|+|.-..+|.+..+|.|.+..+.- =++|++ +-+..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------------------------qRlwti---------p~p~~ 62 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW---------------------------QRLWTI---------PIPGE 62 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEecc---------------------------ceeEec---------cCCCC
Confidence 345688899999999999999999988885431 244444 33444
Q ss_pred ceE-EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEcc
Q 042146 102 YVF-CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNR 152 (262)
Q Consensus 102 ~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~ 152 (262)
.++ +++|.|||+.++.|-.||+|++.|++++..+.... .-...|.++-|.|
T Consensus 63 ~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 63 NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 455 99999999999999999999999999987776632 2355778888863
No 332
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=4.2e-06 Score=59.66 Aligned_cols=120 Identities=15% Similarity=0.206 Sum_probs=79.7
Q ss_pred EEeecCCCeEEEEECCCCeeee-eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------
Q 042146 115 IVSDTFNETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------- 173 (262)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------- 173 (262)
+..-+.+|.|.-++++..+..- .-..+... .....-+..++.|+.+|.|.+|....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4445667788777766433211 11112211 11122356788899999999998763
Q ss_pred --CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc-cceEEEEEcCCCCeEEEe--ee
Q 042146 174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR-DPVISVASHPAKNIIASG--AL 248 (262)
Q Consensus 174 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~--~~ 248 (262)
.++.+..+++.+|.|+.|+....+.+..... |. .++.....+..+.+++.+ |
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~----------------------h~~~~~e~~ivv~sd~~i~~a~~S- 166 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ----------------------HNFESGEELIVVGSDEFLKIADTS- 166 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeecc----------------------ccCCCcceeEEecCCceEEeeccc-
Confidence 3455888999999999999988877766655 44 556666666677777777 6
Q ss_pred cCCCcEEEEeecc
Q 042146 249 DNDRTMKIWTQEK 261 (262)
Q Consensus 249 d~d~~i~iw~~~~ 261 (262)
.|..++.|++.+
T Consensus 167 -~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 167 -HDRVLKKWNVEK 178 (238)
T ss_pred -cchhhhhcchhh
Confidence 678888888764
No 333
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=0.0015 Score=50.46 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=68.2
Q ss_pred cceEEEEEeCCCCEEEeecC-----------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CCeEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTF-----------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DGLYRI 168 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~ 168 (262)
...+.+.+.|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|.-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34567888888887765444 144555554 45555655555555688999999988877765 478888
Q ss_pred EeCCC---------------------------CCccEEEEEcCCC-eEEEEecCCCceeeEEec
Q 042146 169 LDAST---------------------------PNGKFILVGTLDN-TLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 169 ~d~~~---------------------------~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~ 204 (262)
|++.. .++.+-+++..+| .|.+|+.. |+++..+..
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 87652 3445554444443 78888877 888877765
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=0.0012 Score=48.52 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=75.5
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.+++.+..+|.....+.....-=......+++.++..|+.|+..+..|.++..++...+...+-..+-+..|-...|+.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 56777788887766654332222234567799999999999999999999999988876554444444555633345555
Q ss_pred eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
...|.+.--.... --+..+..++-||.+.-++ +.|+.+..+
T Consensus 154 ~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~ 214 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRP 214 (354)
T ss_pred eccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEee
Confidence 5555554433332 1234555566677666555 445554443
No 335
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=3.6e-05 Score=61.79 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
.-+-+.|+|-|.||++-...| |.+|--++-..++.+. |. .|.-+.|||..++|++=+..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~ 270 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPE 270 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCC
Confidence 456789999999999987655 6889766666666663 54 47889999999999987653
No 336
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.13 E-value=0.00049 Score=51.00 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=47.8
Q ss_pred EEEeCCCCEEEeecCCCeEEEEECCCC--eeeeee---ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 106 INFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVL---PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 106 ~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
++.+.+|++||..- |..|.|-..+.. ..+... +...-+=..++||||+..|+.+...|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 45677888887764 667777655432 122222 22233567899999999999999999999999875
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.12 E-value=1.5e-05 Score=40.33 Aligned_cols=39 Identities=38% Similarity=0.721 Sum_probs=33.5
Q ss_pred CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
+++...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999889999999999999986
No 338
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.11 E-value=0.0019 Score=48.59 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=89.6
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEe-CCCCEEEeecCCCeEEEEECCCCeeeeeeec-----CCCCeeeEEEccCC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFN-PQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-----HSDPVTAIDFNRDG 154 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 154 (262)
.|..|+..++.... +... . ...+++. +++.++++ ... .+.++|+.+++....... .....+++++.|+|
T Consensus 23 ~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G 97 (246)
T PF08450_consen 23 RIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG 97 (246)
T ss_dssp EEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS
T ss_pred EEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC
Confidence 46777776654432 2211 1 6777888 56554444 444 445569988865443332 23467899999999
Q ss_pred CEEEEEeCC--------CeEEEEeCCC------------------CCccEEE-EEcCCCeEEEEecCCCce-e---eEEe
Q 042146 155 TMIVTSSYD--------GLYRILDAST------------------PNGKFIL-VGTLDNTLRLWNYSTRKI-L---KTYS 203 (262)
Q Consensus 155 ~~l~~~~~d--------g~i~~~d~~~------------------~~~~~l~-~~~~dg~i~i~d~~~~~~-~---~~~~ 203 (262)
++.++.... |.+..++... ++++.|+ +-+..+.|..+++..... + ..+.
T Consensus 98 ~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 98 NLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp -EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred CEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 977776543 5577777663 6676554 556777788887753221 1 1111
Q ss_pred ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.... ..+..-.+++..+|++.++.- ..+.|.+++.+
T Consensus 178 ~~~~-------------------~~g~pDG~~vD~~G~l~va~~--~~~~I~~~~p~ 213 (246)
T PF08450_consen 178 DFPG-------------------GPGYPDGLAVDSDGNLWVADW--GGGRIVVFDPD 213 (246)
T ss_dssp E-SS-------------------SSCEEEEEEEBTTS-EEEEEE--TTTEEEEEETT
T ss_pred EcCC-------------------CCcCCCcceEcCCCCEEEEEc--CCCEEEEECCC
Confidence 1000 112366788888888777655 56778777764
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.11 E-value=0.00022 Score=62.50 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=57.6
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
...|.++.|..+++.++.+...|.|.+-|.++... .....-...|.+++|+||+..++..+..+++.+-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 36899999999999999999999999999887653 23334567899999999999999999888876544
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.0001 Score=62.36 Aligned_cols=49 Identities=6% Similarity=0.175 Sum_probs=37.4
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK 130 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 130 (262)
+.+|...+.+.-.....|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus 83 ~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3344444443333445689999999999999999999999999999764
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=5.6e-05 Score=62.35 Aligned_cols=118 Identities=8% Similarity=0.071 Sum_probs=75.0
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF 178 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (262)
...|.--+++..+++++.|+..|.+++|+-..++....-. +..+.+.....+++..+++.|+..|.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~------------- 99 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR------------- 99 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-------------
Confidence 3445555667789999999999999999966554432222 23344555566665555555555444
Q ss_pred EEEEcCCCeEEEEecCCCcee---eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEE
Q 042146 179 ILVGTLDNTLRLWNYSTRKIL---KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMK 255 (262)
Q Consensus 179 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~ 255 (262)
|.++.+....+. ..-+.+. .|...|++++|++++..|++|. ..|+|.
T Consensus 100 ---------V~v~ql~~~~p~~~~~~t~~d~-------------------~~~~rVTal~Ws~~~~k~ysGD--~~Gkv~ 149 (726)
T KOG3621|consen 100 ---------VSVFQLNKELPRDLDYVTPCDK-------------------SHKCRVTALEWSKNGMKLYSGD--SQGKVV 149 (726)
T ss_pred ---------EEeehhhccCCCcceeeccccc-------------------cCCceEEEEEecccccEEeecC--CCceEE
Confidence 444444332111 1101100 1788999999999999999998 889988
Q ss_pred EEeec
Q 042146 256 IWTQE 260 (262)
Q Consensus 256 iw~~~ 260 (262)
+-.++
T Consensus 150 ~~~L~ 154 (726)
T KOG3621|consen 150 LTELD 154 (726)
T ss_pred EEEec
Confidence 76654
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.03 E-value=0.00053 Score=57.09 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=60.7
Q ss_pred CCCEEEeecCCCeEEEEECCC-----CeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-----------
Q 042146 111 QSNRIVSDTFNETIRIWDIKT-----GKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST----------- 173 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~----------- 173 (262)
+|++... .++.|.+.|.++ .+.+..+.. ......+.++|||+++++++ .+.++.++|+..
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4555444 256799999887 345555544 44568999999999877765 689999999876
Q ss_pred --------------------CCccEEEEEcCCCeEEEEecCC
Q 042146 174 --------------------PNGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 174 --------------------~~~~~l~~~~~dg~i~i~d~~~ 195 (262)
.+|....+--.|..|..||+..
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4566666667888899999875
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.02 E-value=0.001 Score=42.39 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=65.3
Q ss_pred eEEEEEcc---C-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 26 VSYVKFSH---D-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 26 v~~~~~~~---~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
|++|++.. + .+.|++|+.|..|++|+- .+.+.++. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~-------------------------------------~e~~~Ei~-e~~ 43 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG-------------------------------------DEIVAEIT-ETD 43 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC-------------------------------------CcEEEEEe-ccc
Confidence 67777755 3 258999999999999942 23344443 345
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CC---CEEEEEeCCCeEE
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DG---TMIVTSSYDGLYR 167 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~ 167 (262)
.|+++.-... ..++.+..+|+|-+|+- .+.++..+. +..++++.+.. ++ ..|++|-.+|.|-
T Consensus 44 ~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 44 KVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5677766654 66888899999999974 344556653 34466666554 32 2577777776653
No 344
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00017 Score=57.90 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=90.7
Q ss_pred CCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC--E-----EEEEeCCCeEEEEeCCC--------
Q 042146 110 PQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT--M-----IVTSSYDGLYRILDAST-------- 173 (262)
Q Consensus 110 ~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~dg~i~~~d~~~-------- 173 (262)
.+.+++ .++.....++-.|++.|+.+.+.+.+.. |+-+.+.|+.+ . =+.|-.|..|.-||.|.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 344444 4566667889999999999999987666 77777877543 2 34566788899999886
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS 236 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 236 (262)
....++++|+.+|.|++||.-..+.-..+++ -..+|..+..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg----------------------LG~~I~hVdv 479 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPG----------------------LGDAIKHVDV 479 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccc----------------------cCCceeeEEe
Confidence 4567899999999999999743333344454 6788999999
Q ss_pred cCCCCeEEEeeecCCCcEEEEee
Q 042146 237 HPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 237 ~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
+.+|+.|++.+ +..+.+-++
T Consensus 480 tadGKwil~Tc---~tyLlLi~t 499 (644)
T KOG2395|consen 480 TADGKWILATC---KTYLLLIDT 499 (644)
T ss_pred eccCcEEEEec---ccEEEEEEE
Confidence 99999888776 445555443
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4e-05 Score=62.43 Aligned_cols=92 Identities=21% Similarity=0.351 Sum_probs=74.3
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCee-eEEEccCCCEEEEEeCCCeEEEEeCCCCCc--
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT-AIDFNRDGTMIVTSSYDGLYRILDASTPNG-- 176 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-- 176 (262)
...+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|...+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999988 777888887787787 999999999999999999999999987321
Q ss_pred cEEEEEcCCCeEEEEe
Q 042146 177 KFILVGTLDNTLRLWN 192 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d 192 (262)
.+.++-..+-.-.+|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 1233344455556675
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=4.3e-06 Score=68.04 Aligned_cols=120 Identities=13% Similarity=0.258 Sum_probs=77.3
Q ss_pred eecccCcCceEEEEEcc-CCCeEEEec----CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 17 QTLNGHLRAVSYVKFSH-DGRLLTSSS----AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~-~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
....+|..+.++++|++ |.+.||+|- .|..+.|||+...-. .+..
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt----vPke-------------------------- 145 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT----VPKE-------------------------- 145 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC----CCcc--------------------------
Confidence 34567888899999988 456666662 244666776654211 0000
Q ss_pred cceeccc-CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEE
Q 042146 92 SLKTLIG-HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRI 168 (262)
Q Consensus 92 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~ 168 (262)
...+.+ -.....+++|..+.+++.+|.....+.++|++.. .....+ .+..+..+...| .++++++-. ||.|.+
T Consensus 146 -~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAi 221 (783)
T KOG1008|consen 146 -SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAI 221 (783)
T ss_pred -ccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceee
Confidence 001111 2233457888888999999999999999999833 212222 244566778888 777777665 999999
Q ss_pred Ee
Q 042146 169 LD 170 (262)
Q Consensus 169 ~d 170 (262)
||
T Consensus 222 wD 223 (783)
T KOG1008|consen 222 WD 223 (783)
T ss_pred cc
Confidence 99
No 347
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.4e-05 Score=59.51 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=67.5
Q ss_pred ccccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA 90 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~ 90 (262)
+++..+.+.+|...|..++|||..+ ++..++.+++|+|.|+ ++.
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-----------------------------------et~ 226 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-----------------------------------ETS 226 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEec-----------------------------------ccc
Confidence 4556667788999999999999877 6788888888777754 455
Q ss_pred ccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC
Q 042146 91 TSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG 132 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 132 (262)
..+..+..+ .++++++|+- +.+++++|-..|.|.+||++..
T Consensus 227 ~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 227 CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 555566655 7899999987 4567899999999999999853
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.0093 Score=48.43 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=34.8
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK 130 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 130 (262)
|.+|+. .|+.+.++.-..+.+.++.|..+.. |++...||.+++||+.
T Consensus 63 I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 63 IQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 777776 4666665544448899999987654 5555679999999986
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.0075 Score=46.70 Aligned_cols=206 Identities=15% Similarity=0.251 Sum_probs=115.2
Q ss_pred EEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCC--CCCC--C-------CccccCCccc-----ccccee
Q 042146 28 YVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDS--TPPS--P-------LQKFTGHEQG-----ISDLAT 81 (262)
Q Consensus 28 ~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~--~~~~--~-------~~~~~~~~~~-----v~~~~~ 81 (262)
.+..+|+++.+++++ ..-.|.+||.++...... .++. . ...+...... .+....
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 466899999888743 244799999877532110 0110 0 0011111111 111227
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC-CCeeeeee----ecCCCCee-eEEEccCC
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK-TGKCLKVL----PAHSDPVT-AIDFNRDG 154 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~~~~~v~-~~~~~~~~ 154 (262)
|.|.|+..++.+.++.-. + |.-..| ..+-+.+.+.||.+.-..+. .|+..... ..-..++. .-++...+
T Consensus 120 VtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 888888888777665421 1 222334 23457788889998888886 45443221 11122222 23344455
Q ss_pred CEEEEEeCCCeEEEEeCCC---------------------------------CCccEEEEEc-------CCC--eEEEEe
Q 042146 155 TMIVTSSYDGLYRILDAST---------------------------------PNGKFILVGT-------LDN--TLRLWN 192 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~---------------------------------~~~~~l~~~~-------~dg--~i~i~d 192 (262)
..++--+.+|.|+-.|+.. +.+++++.-. .|+ .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 5666678888888887765 2233322221 111 477778
Q ss_pred cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.+++.+..+. -+.++.+|..+.+.+ +|++.+. .++.|.+||..+
T Consensus 276 ~~t~krv~Ri~-----------------------l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~t 321 (342)
T PF06433_consen 276 LKTHKRVARIP-----------------------LEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAAT 321 (342)
T ss_dssp TTTTEEEEEEE-----------------------EEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT
T ss_pred CCCCeEEEEEe-----------------------CCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcC
Confidence 88888888886 344677888888755 6655442 578999999753
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.005 Score=48.37 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=89.4
Q ss_pred eEEEEecCCCccceeccc-CCcceEEEEEeC---C----CCEEEeecC----------CCeEEEEECCCC-----e--ee
Q 042146 81 TIRLWDVPTATSLKTLIG-HTNYVFCINFNP---Q----SNRIVSDTF----------NETIRIWDIKTG-----K--CL 135 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~---~----~~~l~~~~~----------dg~i~vwd~~~~-----~--~~ 135 (262)
.|++.|..+.+.+.++.- ....+.+++... + ..++++|+. .|.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 366777777666554432 233455554432 2 456776543 289999999874 2 22
Q ss_pred eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC--------------------CccEEEEEcCCCeEEEEecCC
Q 042146 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP--------------------NGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------------------~~~~l~~~~~dg~i~i~d~~~ 195 (262)
... ...++|++++-- ++ .|+++. .+.|.+|++... .++++++|.....+.++....
T Consensus 83 ~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 222 347889998866 34 344433 588999988762 245666676666666653332
Q ss_pred -CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 196 -RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...+..+.... ....++++.|-++++.++.+. .+|.+.++..+.
T Consensus 159 ~~~~l~~va~d~--------------------~~~~v~~~~~l~d~~~~i~~D--~~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 ENNKLILVARDY--------------------QPRWVTAAEFLVDEDTIIVGD--KDGNLFVLRYNP 203 (321)
T ss_dssp TTE-EEEEEEES--------------------S-BEEEEEEEE-SSSEEEEEE--TTSEEEEEEE-S
T ss_pred cCCEEEEEEecC--------------------CCccEEEEEEecCCcEEEEEc--CCCeEEEEEECC
Confidence 22122222111 334578888876667777777 889999988763
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.012 Score=47.90 Aligned_cols=101 Identities=13% Similarity=0.217 Sum_probs=61.3
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 173 (262)
+++..|+++|+++++|.-..+|.+.+.+..-.+...++... ......|.|.-+...++.- ...+.+.....
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~~~~~~~ 294 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDGDSISFW 294 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCCCceEEe
Confidence 57999999999999999888999999876655555555433 3456777787543322222 33444443222
Q ss_pred CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
-++..++..-.|| +||..-..-+.++.++.
T Consensus 295 ~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 295 YDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred ccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 1223344444454 77776555555555543
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.002 Score=52.28 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=72.4
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.+.++++.+++....+. ....-..-+|+|||+.|+ +...|| .|.++|+..++. ..+....+.-..=.|+|+|+.+
T Consensus 219 ~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 219 RIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred eEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEE
Confidence 57788888776555443 233344668999998875 445566 477778877663 3344333333466789999977
Q ss_pred EEEe-CCCe--EEEEeCCC-------------------CCccEEEEEcCC-Ce--EEEEecCCCceee
Q 042146 158 VTSS-YDGL--YRILDAST-------------------PNGKFILVGTLD-NT--LRLWNYSTRKILK 200 (262)
Q Consensus 158 ~~~~-~dg~--i~~~d~~~-------------------~~~~~l~~~~~d-g~--i~i~d~~~~~~~~ 200 (262)
+-.+ ..|. |.+++... |++++++..+.. |. |.+.|+.++..++
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 6654 5555 44444443 778877776643 33 5556665554333
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.011 Score=47.51 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=96.6
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
+.+...++...++|++++.|. =-++|.|..+|.+.|.|+..... |+-=.+..
T Consensus 76 f~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPav------------------------I~~~~i~~--- 127 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAV------------------------IYNENIRE--- 127 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEE------------------------EEEEEGGG---
T ss_pred cCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeE------------------------Eeeccccc---
Confidence 455666677789999999974 44899999999999998854211 11101111
Q ss_pred ceecccCCcceEEEEEeC-----CC---CEEEeecCCCeEEEEECCC---Ce----eeeeeecCCCCeeeEE-EccC---
Q 042146 93 LKTLIGHTNYVFCINFNP-----QS---NRIVSDTFNETIRIWDIKT---GK----CLKVLPAHSDPVTAID-FNRD--- 153 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~-----~~---~~l~~~~~dg~i~vwd~~~---~~----~~~~~~~~~~~v~~~~-~~~~--- 153 (262)
...-......++++.|.. |+ -.+++|...|.+.+|.+.- +. .......+.++|..+. ++.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~ 207 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE 207 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence 001112335677777763 22 3588899999999997741 11 1112223455555544 2111
Q ss_pred -----------------CCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEE
Q 042146 154 -----------------GTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 154 -----------------~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~ 191 (262)
-..++....+..++++.... ..+..|++-..+|.|++|
T Consensus 208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 12344455567778777654 135566666788899999
Q ss_pred ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
.+...+.+..++-.... ....+....++++|..++-.+
T Consensus 288 SLP~Lkei~~~~l~~~~------------------d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 288 SLPSLKEIKSVSLPPPL------------------DSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp ETTT--EEEEEE-SS---------------------HHHHTT-EE-TTS-EEEE-S
T ss_pred ECCCchHhhcccCCCcc------------------ccccccccEECCCCCEEEEeC
Confidence 98888777776642110 223344566677888776654
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.00017 Score=51.72 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.3
Q ss_pred CCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (262)
++.+..+++.+|.|+.|++.-++.+-....|+
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeecccc
Confidence 55678899999999999998888776666666
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0058 Score=52.94 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=60.3
Q ss_pred eEEEEecCCCc-ccee----cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 81 TIRLWDVPTAT-SLKT----LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 81 ~i~v~d~~~~~-~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
.+..||.+-.. .+.. ........+|++-..+ .+||+|+.+|.|++||--..+....+++-..+|..|..+.||+
T Consensus 553 ~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 553 SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred ceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc
Confidence 68888887532 2211 1123455777776654 4789999999999999433233344566678999999999999
Q ss_pred EEEEEeCCCeEEEEeC
Q 042146 156 MIVTSSYDGLYRILDA 171 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~ 171 (262)
++++.+ +..+.+++.
T Consensus 632 wilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 632 WILATC-KTYLLLIDT 646 (794)
T ss_pred EEEEee-cceEEEEEE
Confidence 877666 445666664
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0033 Score=51.03 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=86.8
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEee---cCC-CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD---TFN-ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
+.+-|.. +.....+......+..-+|+|++..++-. ... ..+.++|+.+++...... ..+.-..-+|+|||+.|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3344433 44444444445667777899988775432 222 469999999887655543 34444567899999876
Q ss_pred EEE-eCCCe--EEEEeCCC-------------------CCccEEEEEcCC-C--eEEEEecCCCceeeEEeccCCceeEE
Q 042146 158 VTS-SYDGL--YRILDAST-------------------PNGKFILVGTLD-N--TLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~~~-~~dg~--i~~~d~~~-------------------~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+.+ ..||. |.++|+.. |+|++++-.+.. | .|.++|++.+.. ..+..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-------- 323 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-------- 323 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--------
Confidence 655 45665 55556554 788877766533 3 466667765554 22222
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
....-..-.|+|+|++++..+
T Consensus 324 --------------~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 324 --------------SGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred --------------cCCCCcCccCCCCCCEEEEEe
Confidence 111222667999999888776
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0032 Score=55.10 Aligned_cols=67 Identities=25% Similarity=0.460 Sum_probs=55.8
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc---cCCCEEEEEeCCCe
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN---RDGTMIVTSSYDGL 165 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~ 165 (262)
..++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+.+.+-+. .++..++++..-|.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 45789999999999999999999999999999999999888777766665443 35557888877775
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.70 E-value=0.0061 Score=48.58 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=56.7
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-----------------CC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-----------------SD 143 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~ 143 (262)
.+.++|+++++....... ...+....|+|+|+.++... ++.|.++++.++...+.-... -+
T Consensus 24 ~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred eEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 578889988654443332 56788999999999998876 578999998777543322111 11
Q ss_pred CeeeEEEccCCCEEEEEeCC-CeEEEEe
Q 042146 144 PVTAIDFNRDGTMIVTSSYD-GLYRILD 170 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d-g~i~~~d 170 (262)
.-..+.||||+++|+....| ..|..+.
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccceEECCCCCEEEEEEECCcCCceEE
Confidence 23678999999998877643 3444433
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.70 E-value=0.01 Score=50.39 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCEEEeecCC------------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146 103 VFCINFNPQSNRIVSDTFN------------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (262)
.+.-.|+|+|+.+++.... +.+.+.++..+.... ...+.|..+.|||||..++...
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 6677899998877665432 233333443333221 2356799999999999887654
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.0084 Score=44.28 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------ 173 (262)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------ 173 (262)
..+++.|+..+.+.--|..+|+...+.. -...+.+-+.- -|+.++.|+..|.+++.+..+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678889999999999999998877643 23333332222 467899999999999988776
Q ss_pred --CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 174 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
+++..+..|+.|+..+..|.++..++...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 789999999999999999999988887755
No 361
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.60 E-value=0.032 Score=46.63 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=93.5
Q ss_pred CeEEEecCCCeEEEeecCCCCCCCC-CCCCC---------CccccCCcccc----------ccceeEEEEecCCCcccee
Q 042146 36 RLLTSSSAEKTLLTYSLSSISNFDS-TPPSP---------LQKFTGHEQGI----------SDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 36 ~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~---------~~~~~~~~~~v----------~~~~~i~v~d~~~~~~~~~ 95 (262)
..++.++.++.|.-+|.++.+..-. ..... ...+....--+ ...+.+..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 5677888899999999876543211 11000 00000000000 0123678889888887776
Q ss_pred cccCCc--------------------ce-EEEEEeCCCCEEEeecCCC------------------eEEEEECCCCeeee
Q 042146 96 LIGHTN--------------------YV-FCINFNPQSNRIVSDTFNE------------------TIRIWDIKTGKCLK 136 (262)
Q Consensus 96 ~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~ 136 (262)
+..... .+ ...++.+.+..++.++.++ .|.-+|+++++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 543211 01 1244555567788777665 79999999999988
Q ss_pred eeecCCCCee------eEEEc----cCCC---EEEEEeCCCeEEEEeCCC---------------CCccEEEEEc-----
Q 042146 137 VLPAHSDPVT------AIDFN----RDGT---MIVTSSYDGLYRILDAST---------------PNGKFILVGT----- 183 (262)
Q Consensus 137 ~~~~~~~~v~------~~~~~----~~~~---~l~~~~~dg~i~~~d~~~---------------~~~~~l~~~~----- 183 (262)
.++.-..... ...+. -++. .++.++.+|.+..+|.++ .+...++.+.
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~ 350 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPL 350 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccc
Confidence 8653111111 01111 1232 567777788888777765 1113333322
Q ss_pred -------------CCCeEEEEecCCCceeeEEec
Q 042146 184 -------------LDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 184 -------------~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+|.+.-.|+.+|+.+.+...
T Consensus 351 ~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 351 GLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE 384 (488)
T ss_pred cCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence 356777778888877766653
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.55 E-value=0.013 Score=43.83 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=52.3
Q ss_pred ecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 95 TLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+.+-...+..|+|+|+.+ ++++....+.|..++. +++.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556699999999655 6677778889988996 47777776543 3567889998777777766678999999884
Q ss_pred C
Q 042146 173 T 173 (262)
Q Consensus 173 ~ 173 (262)
.
T Consensus 95 ~ 95 (248)
T PF06977_consen 95 D 95 (248)
T ss_dssp -
T ss_pred c
Confidence 3
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.035 Score=44.78 Aligned_cols=91 Identities=21% Similarity=0.316 Sum_probs=63.8
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
.|.+.|..+.........- .....++++|+++.++.+.. ++++.+.|..+++..........+ ..++++|+|..+
T Consensus 97 ~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~v 174 (381)
T COG3391 97 TVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKV 174 (381)
T ss_pred eEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeE
Confidence 3455554444444433221 15567899999987776554 689999999999888876554455 899999999966
Q ss_pred EEEe-CCCeEEEEeCCC
Q 042146 158 VTSS-YDGLYRILDAST 173 (262)
Q Consensus 158 ~~~~-~dg~i~~~d~~~ 173 (262)
+.+. .++.|.++|...
T Consensus 175 yv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 175 YVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EEEecCCCeEEEEeCCC
Confidence 6555 788899888554
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.49 E-value=0.00045 Score=36.82 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
....|..++|+|...+||.+. .+|.|.+++++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t--~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGT--EDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEE--CCCeEEEEECCC
Confidence 345799999999999999999 899999999853
No 365
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.45 E-value=0.00082 Score=35.84 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=28.2
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecC
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS 53 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~ 53 (262)
..+|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999773
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.40 E-value=0.027 Score=44.90 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=51.1
Q ss_pred eEEEEecCCCccce-ec----ccCCcceEEEEEeCCCCEEEe--ecCC---CeEEEEECCCCeeeeeeec-CCC---Cee
Q 042146 81 TIRLWDVPTATSLK-TL----IGHTNYVFCINFNPQSNRIVS--DTFN---ETIRIWDIKTGKCLKVLPA-HSD---PVT 146 (262)
Q Consensus 81 ~i~v~d~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~--~~~d---g~i~vwd~~~~~~~~~~~~-~~~---~v~ 146 (262)
.+.++|+.+++... .. ......+..+.|.++++.|+. ...+ -.+.++|..++........ ... .-.
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 77888988776532 11 234567899999999884433 2222 2477778877654333322 122 223
Q ss_pred eEEEc-cCCC-EEEEEeCCCeEEEEeCC
Q 042146 147 AIDFN-RDGT-MIVTSSYDGLYRILDAS 172 (262)
Q Consensus 147 ~~~~~-~~~~-~l~~~~~dg~i~~~d~~ 172 (262)
...+. +++. ++.....+|.-.||-+.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~ 266 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYD 266 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence 45554 5554 55555577755544433
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.39 E-value=0.031 Score=43.90 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=58.8
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--- 173 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--- 173 (262)
..++|++++-. .+. ++++. .+.|.+|++...+ ....-.. ....+.++.. .+++++.|.....+.++....
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCC
Confidence 46788888877 344 44444 4799999998777 4333221 2224555544 466999999888877774332
Q ss_pred --------------------CCccEEEEEcCCCeEEEEecC
Q 042146 174 --------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 174 --------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
.+++.++++..+|.+.++...
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 355688888888988888765
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.045 Score=41.21 Aligned_cols=123 Identities=18% Similarity=0.306 Sum_probs=70.9
Q ss_pred eEEEEecCCC-ccceecccCCcceEEEEEeCCCCEEEeecC------------------CCeEEEEECCCCeeeeee--e
Q 042146 81 TIRLWDVPTA-TSLKTLIGHTNYVFCINFNPQSNRIVSDTF------------------NETIRIWDIKTGKCLKVL--P 139 (262)
Q Consensus 81 ~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~vwd~~~~~~~~~~--~ 139 (262)
.|-|||.+.+ +.+.++..|.-.-..+.+.+||+.++.+.. .-++.+.|..+++.+.+. .
T Consensus 141 ViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 141 VIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred eEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence 4666666532 345567777777778899999999887642 112333444444443322 1
Q ss_pred --cCCCCeeeEEEccCCCEEEEEeCCC----------------eEEEEeCCC-----------------CCccEEEEEcC
Q 042146 140 --AHSDPVTAIDFNRDGTMIVTSSYDG----------------LYRILDAST-----------------PNGKFILVGTL 184 (262)
Q Consensus 140 --~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~~~d~~~-----------------~~~~~l~~~~~ 184 (262)
.+...|..++..+||..++.+-..| -+..+++.. .++-..+++-.
T Consensus 221 ~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence 2334577788888877666554332 223333322 23334444445
Q ss_pred CCeEEEEecCCCceeeEEe
Q 042146 185 DNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 185 dg~i~i~d~~~~~~~~~~~ 203 (262)
.....+||..+|..+..-.
T Consensus 301 GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 301 GNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred CCeEEEEEcCCCcEEeccc
Confidence 5567789999998876543
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.23 E-value=0.032 Score=44.74 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=72.1
Q ss_pred EEEEeCCCCEEEeec------CCCeEEEEECCCCeeeeeeecC---CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 042146 105 CINFNPQSNRIVSDT------FNETIRIWDIKTGKCLKVLPAH---SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN 175 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 175 (262)
.+-.-|+|+.++++- .-|-+.++|-++.+........ ...-..+-|.|..+.++++.-.. -..+.-- .+
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~-P~~~~~G-f~ 211 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGA-PSMFEKG-FN 211 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B----HHHHTT----
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCC-hhhcccC-CC
Confidence 344557887777632 2346888888877766655432 23457788899888888875321 0011000 01
Q ss_pred ccEEEEEcCCCeEEEEecCCCceeeEEeccCCce--eEEEEEEecCCCeeEEc---------------------------
Q 042146 176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK--YCISSTFSVTNGKYIVS--------------------------- 226 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------------------- 226 (262)
..-+..+--...+.+||+.+.+.++++.-..... ..++.+..+....-+++
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 1112222233578889988888888776543332 22333333333222222
Q ss_pred ------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 ------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
-..-|+.|..|.|.++|..+.| -+|.|+.||+..
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W-~~GdvrqYDISD 343 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW-LHGDVRQYDISD 343 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET-TTTEEEEEE-SS
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc-cCCcEEEEecCC
Confidence 0234799999999999999998 599999999864
No 370
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.23 E-value=0.031 Score=40.79 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=68.6
Q ss_pred EEEEEccCCCeE-EEecCCCeEEEeecC--CCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 27 SYVKFSHDGRLL-TSSSAEKTLLTYSLS--SISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 27 ~~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
+.++|+.+.+.+ .+-+.+-.|.-||.+ +..... .=.++|++..++...+...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---------------------r~~i~dlrk~~~~e~~~PD---- 215 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---------------------RKVIFDLRKSQPFESLEPD---- 215 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccC---------------------cceeEEeccCCCcCCCCCC----
Confidence 456676665543 444556677677643 211100 0124566554433333222
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEE
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVT 159 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 159 (262)
.+++..+|++.++.-..++|...|+.+++.+.+++-....|++++|-- +-..|++
T Consensus 216 -Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 216 -GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred -cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 344566899999999999999999999999999998899999999964 3334443
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.024 Score=44.01 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=81.1
Q ss_pred Cceeeecc-cccceecccCcCceEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146 5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI 82 (262)
Q Consensus 5 ~~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i 82 (262)
|.++.+.+ ...++.+..|-..-+.|+||||++.|..+. ..+.|..|+++... .
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~---g---------------------- 197 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT---G---------------------- 197 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc---C----------------------
Confidence 34666663 456666666677778999999998776664 44777777664200 0
Q ss_pred EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEE
Q 042146 83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTS 160 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 160 (262)
.+.............+..-.++...+|.+.+++-.+| .|.+|+.. ++++..+..+...+++++|-- +.+.|++.
T Consensus 198 ---~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 198 ---PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ---ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 0001111112222345556788888999886555554 99999988 888888877767788888853 44544444
Q ss_pred e
Q 042146 161 S 161 (262)
Q Consensus 161 ~ 161 (262)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 3
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.02 E-value=0.084 Score=40.41 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
..++.|+.|+++| +.+++.........+. +..+|..+...|+-+.|++-+ |+.+.++++..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3678899999998 8999983332222222 344499999999777766655 59999999766
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.95 E-value=0.04 Score=46.90 Aligned_cols=115 Identities=5% Similarity=0.007 Sum_probs=72.1
Q ss_pred cceEEEEEeCCCCEEEeec------CCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 101 NYVFCINFNPQSNRIVSDT------FNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
..+...+++|+|+.++..- .|. .|.+++.. +.. ..+.. ....+.-.|+|+|..+++......+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~----- 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVV----- 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceE-----
Confidence 4678899999999876544 233 56666642 222 22322 22378899999999888876432221
Q ss_pred CCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146 173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252 (262)
Q Consensus 173 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~ 252 (262)
++......+.+.+.++..++... . ..+.|..+.|||||..++... ++
T Consensus 422 -----~v~~~~~~gql~~~~vd~ge~~~--~-----------------------~~g~Issl~wSpDG~RiA~i~---~g 468 (591)
T PRK13616 422 -----RVIRDPATGQLARTPVDASAVAS--R-----------------------VPGPISELQLSRDGVRAAMII---GG 468 (591)
T ss_pred -----EEeccCCCceEEEEeccCchhhh--c-----------------------cCCCcCeEEECCCCCEEEEEE---CC
Confidence 12222234566666776655543 1 455799999999999888775 35
Q ss_pred cEEE
Q 042146 253 TMKI 256 (262)
Q Consensus 253 ~i~i 256 (262)
.|.+
T Consensus 469 ~v~V 472 (591)
T PRK13616 469 KVYL 472 (591)
T ss_pred EEEE
Confidence 6655
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.07 Score=43.63 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=73.2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCC-------EEEeecCCCeEEEEECCCCee--eeeeecC----CCCeee
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-------RIVSDTFNETIRIWDIKTGKC--LKVLPAH----SDPVTA 147 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~--~~~~~~~----~~~v~~ 147 (262)
.++-.|++.|+.+.+++-+.. |+-+.+.|+.+ .-+.|-.+..|.-||+|-... +...+.| .....|
T Consensus 357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence 677889999999988887666 77777877543 234566788999999984322 2222222 223455
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEec
Q 042146 148 IDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNY 193 (262)
Q Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~ 193 (262)
.+-..+ -++++|+.+|.|++||-.. .+|+++++.+ +..+.+.++
T Consensus 436 ~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 554444 3899999999999999633 5788777665 445555554
No 375
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.0012 Score=56.72 Aligned_cols=91 Identities=18% Similarity=0.312 Sum_probs=51.2
Q ss_pred EEEEEeC---CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEE
Q 042146 104 FCINFNP---QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFIL 180 (262)
Q Consensus 104 ~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~ 180 (262)
.-+.|.| +.-++..+-.++.|++....+.. ...+..|...+..++|-..|-.++.+ -+|||..++
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~-----------lSpDGtv~a 251 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLAS-----------LSPDGTVFA 251 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhhee-----------eCCCCcEEE
Confidence 4444544 56677788888898887765433 24556688888777765544322222 114444555
Q ss_pred EEcCCCeEEEEec-----CCCceeeEEeccC
Q 042146 181 VGTLDNTLRLWNY-----STRKILKTYSGYT 206 (262)
Q Consensus 181 ~~~~dg~i~i~d~-----~~~~~~~~~~~~~ 206 (262)
+++.||.+++|.+ ..-+++...+.|+
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 5555665555543 3334445555443
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.85 E-value=0.19 Score=40.75 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.8
Q ss_pred CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 152 (262)
|...+++|..+|.|++|.. +|..+..-..|..+|..+.+..
T Consensus 78 dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 78 DWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 4567999999999999984 6777666667888888888754
No 377
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.81 E-value=0.043 Score=44.07 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=76.4
Q ss_pred cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee-eee-ecCCC----Cee-eEEEccCCCEEEEEeCCCeEEE
Q 042146 96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL-KVL-PAHSD----PVT-AIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
+......+..+-..|||+.++.-+. ..+.++++.+.... +++ ....+ .|+ ++..-..|.-+.+++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445567888889999999887665 67888888654321 111 11111 122 1222234566777888887776
Q ss_pred E-eCCCCC-------------------------ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 169 L-DASTPN-------------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 169 ~-d~~~~~-------------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
| |.+..+ .+-+++-..+|++.++....-+.+-.-
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-------------------- 354 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-------------------- 354 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--------------------
Confidence 5 544411 112222222233322221111111000
Q ss_pred eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.--..+.-+++||.+.+|++- +.|.|+++.+++
T Consensus 355 ---~~~~~~~~~~~Sp~~~~Ll~e---~~gki~~~~l~N 387 (733)
T COG4590 355 ---RAYQAPQLVAMSPNQAYLLSE---DQGKIRLAQLEN 387 (733)
T ss_pred ---hhhcCcceeeeCcccchheee---cCCceEEEEecC
Confidence 022356678899999999886 478999998865
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.79 E-value=0.079 Score=45.04 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=71.6
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDASTPNGKF 178 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (262)
...-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|.. +++.+++.+....|.+|..... .+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~--dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY--DY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch--hh
Confidence 34444455555555555556689999999887554432 3467899999964 7777777777777776654320 00
Q ss_pred EEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc-cceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR-DPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
+-. .....+++.+.-. .+. .+|.+..|.++|.+++.+| +.+.|+
T Consensus 109 ~~~-----------~p~w~~i~~i~i~--------------------~~T~h~Igds~Wl~~G~LvV~sG----Nqlfv~ 153 (631)
T PF12234_consen 109 TNK-----------GPSWAPIRKIDIS--------------------SHTPHPIGDSIWLKDGTLVVGSG----NQLFVF 153 (631)
T ss_pred hcC-----------CcccceeEEEEee--------------------cCCCCCccceeEecCCeEEEEeC----CEEEEE
Confidence 000 0111122222110 022 5788999999999887765 467776
Q ss_pred e
Q 042146 258 T 258 (262)
Q Consensus 258 ~ 258 (262)
+
T Consensus 154 d 154 (631)
T PF12234_consen 154 D 154 (631)
T ss_pred C
Confidence 5
No 379
>PHA02713 hypothetical protein; Provisional
Probab=96.67 E-value=0.12 Score=44.09 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=28.1
Q ss_pred CCCEEEeecCCC-----eEEEEECCCCeee--eeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 111 QSNRIVSDTFNE-----TIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 111 ~~~~l~~~~~dg-----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
++++.+.|+.++ .+..||+++.+-. ..+.........++ -++...+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCC
Confidence 577777787654 4888998866422 12221111122222 257777777754
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.64 E-value=0.18 Score=37.87 Aligned_cols=191 Identities=16% Similarity=0.093 Sum_probs=103.2
Q ss_pred cccceecccCcC-ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 13 YTLTQTLNGHLR-AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 13 ~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
++.++++..... -...+.|..++.++-+.+.-|.= .|+.+|+.+++
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S---------------------------------~l~~~d~~tg~ 79 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQS---------------------------------SLRKVDLETGK 79 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEE---------------------------------EEEEEETTTSS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcE---------------------------------EEEEEECCCCc
Confidence 345555542222 24556676777777777665531 35666777776
Q ss_pred cceecccC-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 92 SLKTLIGH-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 92 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
......-. .---..++.. ++++..-.-.++...+||..+.+.+.++.- .+.-+.++ .++..|+.+.....+..+|
T Consensus 80 ~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 80 VLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp EEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-
T ss_pred EEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEEC
Confidence 55443211 1122334444 334444556789999999999998888864 45557777 5678888888888999999
Q ss_pred CCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 171 AST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 171 ~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
..+ -+|...|=.=....|...|..+|+.+..+.-..-... .. .... ...
T Consensus 156 P~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~-----~~-~~~~-~~~ 228 (264)
T PF05096_consen 156 PETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPE-----VG-RDKS-RQP 228 (264)
T ss_dssp TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHH-----HT-STTS-T--
T ss_pred CcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhc-----cc-cccc-ccc
Confidence 765 2333333222334555667777777665532100000 00 0000 000
Q ss_pred cccceEEEEEcCCCCeEEEee
Q 042146 227 HRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~ 247 (262)
...-.+.||++|..+.|...|
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEE
T ss_pred cCCeeEeEeEeCCCCEEEEEe
Confidence 134578999999877666655
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.61 E-value=0.3 Score=39.91 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=52.4
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-----------CCeEEEEECCCCeee--eeeecCCCC--e
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-----------NETIRIWDIKTGKCL--KVLPAHSDP--V 145 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~--~~~~~~~~~--v 145 (262)
.++++|+++++.+...... .....+.|.++++.|+-... ...|+.|.+.+.... ..+...... .
T Consensus 151 ~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 4667788887655432111 11223999999877654332 224788888665322 333333332 5
Q ss_pred eeEEEccCCCEEEEEeCC----CeEEEEeCCC
Q 042146 146 TAIDFNRDGTMIVTSSYD----GLYRILDAST 173 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d----g~i~~~d~~~ 173 (262)
..+..++++++++..+.. ..+.+.|+..
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 678889999987764432 3467777765
No 382
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.60 E-value=0.35 Score=40.55 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.3
Q ss_pred CEEEeecCCCeEEEEECCCCeeeeeeec
Q 042146 113 NRIVSDTFNETIRIWDIKTGKCLKVLPA 140 (262)
Q Consensus 113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 140 (262)
..++.++.+|.|.-+|.++++.+..+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 6788888899999999999999888754
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.021 Score=50.36 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=42.2
Q ss_pred CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 111 QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+..++.|++.|.+-..|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~ 160 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH 160 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence 4667888998999999887653 1112222235799999999888877776666555555444
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.13 Score=38.87 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=84.9
Q ss_pred eEEEEecCCCccceecccCCcc--eEEEEEeCCCCEEEeecC-----CCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc
Q 042146 81 TIRLWDVPTATSLKTLIGHTNY--VFCINFNPQSNRIVSDTF-----NETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~ 152 (262)
...++|....+.+..+...+.. --.=.|+|||.+|++.-. .|.|-|||.+.+ +.+-++..|.-.-..+.+.+
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence 4567888777666554321111 112358999999987543 368999999754 45677778887788999999
Q ss_pred CCCEEEEEeCCCeEEEE-eCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 153 DGTMIVTSSYDGLYRIL-DASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 153 ~~~~l~~~~~dg~i~~~-d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
||+.++.+. |-|..- |.. ...|=..+..-.+.+.|..+|+++.+..-.... +.-.|
T Consensus 172 DGrtlvvan--GGIethpdfg---R~~lNldsMePSlvlld~atG~liekh~Lp~~l------------------~~lSi 228 (366)
T COG3490 172 DGRTLVVAN--GGIETHPDFG---RTELNLDSMEPSLVLLDAATGNLIEKHTLPASL------------------RQLSI 228 (366)
T ss_pred CCcEEEEeC--CceecccccC---ccccchhhcCccEEEEeccccchhhhccCchhh------------------hhcce
Confidence 999888764 323222 111 011112233344556666666665443221000 44557
Q ss_pred EEEEEcCCCCeEEEe
Q 042146 232 ISVASHPAKNIIASG 246 (262)
Q Consensus 232 ~~~~~~p~~~~l~~~ 246 (262)
..++..++|..++.+
T Consensus 229 RHld~g~dgtvwfgc 243 (366)
T COG3490 229 RHLDIGRDGTVWFGC 243 (366)
T ss_pred eeeeeCCCCcEEEEE
Confidence 777777777766554
No 385
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.51 E-value=0.28 Score=38.35 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=75.8
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC----------CCeEEEEECCCCeeeeeeecCCC-------
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF----------NETIRIWDIKTGKCLKVLPAHSD------- 143 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~------- 143 (262)
.+.++|..+++.+..+.. +..-.+..+|+++.++++.. .-.|.+||..+-++..++.-...
T Consensus 18 rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 588889888887666543 22334667999999886432 33699999999887776543222
Q ss_pred CeeeEEEccCCCEEEEEe--CCCeEEEEeCCC----------------C-CccEEEEEcCCCeEEEEecC-CCcee
Q 042146 144 PVTAIDFNRDGTMIVTSS--YDGLYRILDAST----------------P-NGKFILVGTLDNTLRLWNYS-TRKIL 199 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~----------------~-~~~~l~~~~~dg~i~i~d~~-~~~~~ 199 (262)
....++++.++++++... -...|.+.|+.. | .++-+.+-|.||.+.-..+. .|+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 234467777888766643 445677777765 1 12346677889988888877 45554
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.50 E-value=0.25 Score=40.16 Aligned_cols=123 Identities=13% Similarity=0.275 Sum_probs=75.0
Q ss_pred CCCEEEeecCCCeEEEEECCCCe-----eeeeeecCCCCeeeEEEcc----CCCEEEEEeCCCeEEEEeCCC--------
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGK-----CLKVLPAHSDPVTAIDFNR----DGTMIVTSSYDGLYRILDAST-------- 173 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~d~~~-------- 173 (262)
+...+++|+..|.++||++..+. .+.+.+ -+.+|..++.-+ .....++.-.-+.+.+|.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986432 222222 356777776543 122233334556666776532
Q ss_pred ----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 174 ----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 174 ----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
....++.+-+.||.+.+|+-+.......++..-
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l------------------- 175 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL------------------- 175 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-------------------
Confidence 235788888999999999876544334333211
Q ss_pred ccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
..+ .+.+.|.-..|++++ .+..+.-|+.
T Consensus 176 -lPg---Pl~Y~~~tDsfvt~s--ss~~l~~Yky 203 (418)
T PF14727_consen 176 -LPG---PLCYCPRTDSFVTAS--SSWTLECYKY 203 (418)
T ss_pred -CCc---CeEEeecCCEEEEec--CceeEEEecH
Confidence 222 355666667777776 5666666654
No 387
>PHA03098 kelch-like protein; Provisional
Probab=96.49 E-value=0.4 Score=40.72 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=32.6
Q ss_pred CCCEEEeecCC-----CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCC------CeEEEEeCCC
Q 042146 111 QSNRIVSDTFN-----ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYD------GLYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~ 173 (262)
++.+++.|+.+ ..+..||+.+++-.. .+...... .+++ .-+++.++.|+.+ ..+..||..+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 56677777765 357788887654221 11111111 1122 2256677777632 3577888765
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.27 Score=37.41 Aligned_cols=148 Identities=8% Similarity=0.134 Sum_probs=90.5
Q ss_pred cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~ 98 (262)
+.+-...|.++.|+|+.+.|++......-.++= ..+|+.+.+++-
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-----------------------------------t~~GdlirtiPL 125 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVEL-----------------------------------TKEGDLIRTIPL 125 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEE-----------------------------------ecCCceEEEecc
Confidence 345556699999999999888877666554441 123455544321
Q ss_pred C-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee----------eeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 99 H-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK----------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 99 ~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
. -.....|.+.-+++++++-=.++.+.++.+.....+. .....+.....++|.|....|+.+=.-.-+.
T Consensus 126 ~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~ 205 (316)
T COG3204 126 TGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIG 205 (316)
T ss_pred cccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcE
Confidence 1 1223456666666666666667777777665432111 1111255778899999888777777666666
Q ss_pred EEeCCC-------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 168 ILDAST-------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 168 ~~d~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
+|.... ..+..|+.+.+++.+.-.|.. |..+..+
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 665433 456677777777777777754 4444443
No 389
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.13 Score=42.19 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=82.0
Q ss_pred CCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-------EEEEEeCCCeEEEEeCCC---------
Q 042146 111 QSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-------MIVTSSYDGLYRILDAST--------- 173 (262)
Q Consensus 111 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~--------- 173 (262)
+..+++ .|.....++-.|++.|+.+.+...|..- -+.|.|+.+ .-++|-.+..|.-.|.|.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 445544 4666678888899999999888776654 466666321 223444455555555443
Q ss_pred ---------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcC
Q 042146 174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP 238 (262)
Q Consensus 174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 238 (262)
....++++|+..|.|++||.-..+.-..+++ -...|..+..+.
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~----------------------lG~aIk~idvta 613 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG----------------------LGDAIKHIDVTA 613 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc----------------------cccceeeeEeec
Confidence 4567999999999999999654444444444 667888899999
Q ss_pred CCCeEEEeeecCCCcEEEEee
Q 042146 239 AKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 239 ~~~~l~~~~~d~d~~i~iw~~ 259 (262)
+|+.+++.+ ...+.+-++
T Consensus 614 ~Gk~ilaTC---k~yllL~d~ 631 (776)
T COG5167 614 NGKHILATC---KNYLLLTDV 631 (776)
T ss_pred CCcEEEEee---cceEEEEec
Confidence 999887776 235555554
No 390
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.40 E-value=0.4 Score=38.99 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=42.1
Q ss_pred CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
..++++-+-||.+.+|+-+.-...+.+.. ---.-.+.|.|..+.|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 45788889999999999665443333333 222244778888889999998888888864
No 391
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.41 Score=38.71 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=76.4
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeee-----eeecCCCCeeeEEEccCCC
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLK-----VLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~ 155 (262)
+.+.|..+.........-..+ ..+++.|+++.++... .++.|.+.|.......+ ...... .-..+.++|++.
T Consensus 142 vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~ 219 (381)
T COG3391 142 VSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGN 219 (381)
T ss_pred EEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCC
Confidence 334454555555553322234 7899999999766554 78899999977665543 122222 336788999998
Q ss_pred EEEEEeCC---CeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEec
Q 042146 156 MIVTSSYD---GLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 156 ~l~~~~~d---g~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+.+.... +.+...|... |++.++.+.. ..+.+.+.|..+......+..
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 66655443 5788777665 4556565553 336777777777666665543
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.25 E-value=0.38 Score=41.02 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=34.4
Q ss_pred CCCEEEeecCC------CeEEEEECCCCeee--eeeecCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCCC
Q 042146 111 QSNRIVSDTFN------ETIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~ 173 (262)
++...+.|+.+ ..+..||+++..-. ..+.........+ .-+++..+.|+.++ .+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56667777753 34778998776421 1111111111222 23577778888654 477888765
No 393
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.24 E-value=0.19 Score=33.45 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=48.3
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcC
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTL 184 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~ 184 (262)
.-+|....+.|++++.-|+|.|++.......... ...++.-+-+...-.-|++|..+. ......|+.|+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i~~LNin~~italaaG~l~~--------~~~~D~LliGt~ 72 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--QDSDISFLNINQEITALAAGRLKP--------DDGRDCLLIGTQ 72 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc--ccCceeEEECCCceEEEEEEecCC--------CCCcCEEEEecc
Confidence 3456666677888899999999998644321111 233444444444333444443221 123456666664
Q ss_pred CCeEEEEecCCCcee
Q 042146 185 DNTLRLWNYSTRKIL 199 (262)
Q Consensus 185 dg~i~i~d~~~~~~~ 199 (262)
..+..||+....-+
T Consensus 73 -t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 73 -TSLLAYDVENNSDL 86 (136)
T ss_pred -ceEEEEEcccCchh
Confidence 45778998865544
No 394
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.08 E-value=0.55 Score=38.43 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=46.9
Q ss_pred ceEEEEEeCCCCEEEee-cC----CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC-----------e
Q 042146 102 YVFCINFNPQSNRIVSD-TF----NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG-----------L 165 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~-~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 165 (262)
.+....++|++++++.+ +. ...|+++|+++++.+...-... ....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467889999988743 22 3469999999998765431111 123399999988766655332 3
Q ss_pred EEEEeCCC
Q 042146 166 YRILDAST 173 (262)
Q Consensus 166 i~~~d~~~ 173 (262)
|+.|.+.+
T Consensus 204 v~~~~~gt 211 (414)
T PF02897_consen 204 VYRHKLGT 211 (414)
T ss_dssp EEEEETTS
T ss_pred EEEEECCC
Confidence 77777766
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.05 E-value=0.47 Score=36.33 Aligned_cols=173 Identities=17% Similarity=0.286 Sum_probs=97.7
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----------------CCCCcccc---CCccc----cccc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----------------PSPLQKFT---GHEQG----ISDL 79 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----------------~~~~~~~~---~~~~~----v~~~ 79 (262)
..+|..+...|+-+.|++-+ |+.+.++++.......... ......+. .+... +..-
T Consensus 35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK 113 (275)
T ss_pred cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence 34499999999888777765 5999999987754333111 01111111 11110 0111
Q ss_pred eeEEEEecCCC-----ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC------------C
Q 042146 80 ATIRLWDVPTA-----TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH------------S 142 (262)
Q Consensus 80 ~~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------~ 142 (262)
..|.+|..... ...+++. -...+.+++|. ++.++.|..+ ...+.|+.++.....+... .
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 16666766543 2333333 34778899998 6677777755 4678899877654333211 1
Q ss_pred CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.++..+... ++.+|++ . |..-...|... -..+||++-..+ .|.||++.++++++.+..
T Consensus 190 ~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 190 KPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred CceEEEEeC-CceEEEE-e-cceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 233333333 3444443 2 22222223222 235677776664 599999999999998875
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.03 E-value=0.19 Score=40.68 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=64.3
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCCCC
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDASTP 174 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~ 174 (262)
.....+.++..+|++++.++...-|.|.++|+.++..++.+++..+. .+.|.. .+.. .. ......... ...
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~-~~-~~~~~~~~~--~~~ 378 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDR-DR-SNSNSPKSS--SRF 378 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeeccccc-cc-ccccccCCC--Ccc
Confidence 34456889999999999999888899999999999999888876553 233321 1111 00 000000000 000
Q ss_pred CccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.--+++-+..-|.|.||.+++|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 111344566789999999999988887764
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.00 E-value=0.036 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCeeeEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 042146 143 DPVTAIDFNRDG---TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 143 ~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~ 173 (262)
+.+.++.|+|.+ ++|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999843 4788877778888888773
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.97 E-value=0.54 Score=40.20 Aligned_cols=86 Identities=21% Similarity=0.306 Sum_probs=50.7
Q ss_pred CCCEEEeecCCCe-----EEEEECCCCeeeeeeecCCCCeeeEEEc-cCCCEEEEEeCCC------eEEEEeCCC-----
Q 042146 111 QSNRIVSDTFNET-----IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDG------LYRILDAST----- 173 (262)
Q Consensus 111 ~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg------~i~~~d~~~----- 173 (262)
+|.+.++|+.||. |-.||.++.+-...-. ...+....... -+|...++|+.++ .+..||..+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 6788889998874 7788887664221111 11122222222 2677888888554 467777665
Q ss_pred ---------------CCccEEEEEcCCC-----eEEEEecCCCc
Q 042146 174 ---------------PNGKFILVGTLDN-----TLRLWNYSTRK 197 (262)
Q Consensus 174 ---------------~~~~~l~~~~~dg-----~i~i~d~~~~~ 197 (262)
-++...+.|+.|+ +|..||.++.+
T Consensus 459 ~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 3566777777665 25556665543
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.93 E-value=0.57 Score=36.37 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=67.2
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----- 173 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 173 (262)
..+.+..+..+++|+++++++......-||.-...-...-+.....|.+|.|.|++.+.+.+ ..|.|+.=+...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 34668888889999999998766666778754321111222346789999999997765544 777777766111
Q ss_pred --------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146 174 --------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233 (262)
Q Consensus 174 --------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 233 (262)
+++...+ ++..|.+. .....|+.-+..+.... -......
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~-~S~DgGktW~~~~~~~~-------------------~~~n~~~ 280 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLL-VSTDGGKTWQKDRVGEN-------------------VPSNLYR 280 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EE-EESSTTSS-EE-GGGTT-------------------SSS---E
T ss_pred ccccCCcccCceeeEEEEecCCCCEEE-EeCCccEE-EeCCCCccceECccccC-------------------CCCceEE
Confidence 2333333 33344332 33344444333332110 2345778
Q ss_pred EEEcCCCCeEEEeeecCCCcEEEE
Q 042146 234 VASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 234 ~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
+.|.+..+-++.| ++|.|.=|
T Consensus 281 i~f~~~~~gf~lG---~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFVLG---QDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEEE----STTEEEEE
T ss_pred EEEcCCCceEEEC---CCcEEEEe
Confidence 8887777777777 57877544
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.92 E-value=0.51 Score=35.74 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEE-CCCCeee-eeeecC--CCCeeeEEEccCCCEEEEEe
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWD-IKTGKCL-KVLPAH--SDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~ 161 (262)
.+..-.|++++...+....+...+++. ..++... ..+... ...|.++.+||||..++...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 566778899988777766666666663 3333221 112111 12899999999999877655
No 401
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.92 E-value=0.9 Score=38.51 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=38.4
Q ss_pred eEEEEecCCCccceecccCCcc---------eEEEEEeCCCC---EEEeecCCCeEEEEECCCCeee
Q 042146 81 TIRLWDVPTATSLKTLIGHTNY---------VFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCL 135 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~ 135 (262)
.|.-.|+++++....++..... ..-+.+..+|+ .++.+..+|.+++.|-++++++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6777888888887766532211 11222324665 6889999999999999999875
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.91 E-value=1.2 Score=39.76 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=62.8
Q ss_pred eEEEEecCCCccceecccC--CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 TIRLWDVPTATSLKTLIGH--TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
.|.++.....+.+.....+ ++.+.++..- +|+++|.- ...|++|++.+.+.++.-..+..++..+...-.++.++
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 4667766664444443322 2444444332 56666554 46899999998877777667888999999999999999
Q ss_pred EEeCCCeEEEEeCCC
Q 042146 159 TSSYDGLYRILDAST 173 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~ 173 (262)
+|..-+.+.+...+.
T Consensus 885 VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKG 899 (1096)
T ss_pred EeeccceEEEEEEec
Confidence 999888877766554
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.88 E-value=0.47 Score=34.93 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=61.4
Q ss_pred CcceEEEEEeCCCCEEEeecCC---------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEE
Q 042146 100 TNYVFCINFNPQSNRIVSDTFN---------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRIL 169 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~ 169 (262)
+...+.-..+|+|++++-.-.| |.++.|-+. + .+..+...-+--+.++|+.+.+.+. +-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3456677789999985432222 334444321 1 1222222223336688887766544 44566667666
Q ss_pred eCC--C-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 170 DAS--T-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 170 d~~--~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
|.. + ..|++.++.-..|+|...|+.+|+.+.++.-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence 622 2 3456666666678899999999999999886
No 404
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.86 E-value=0.71 Score=36.87 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=54.6
Q ss_pred EEccCCCeEEEec-CCC--eEEEeecCCCCCCCCCCCCC----CccccCCcccccc---ceeEEEEecCCCccceecccC
Q 042146 30 KFSHDGRLLTSSS-AEK--TLLTYSLSSISNFDSTPPSP----LQKFTGHEQGISD---LATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 30 ~~~~~~~~l~s~~-~d~--~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~v~~---~~~i~v~d~~~~~~~~~~~~~ 99 (262)
+|.++|+.|+-++ .|| .+.+.|+++....+...... -..+......+.. ...|...|+.+.+....+.-.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 3567887655544 454 56666666643322222111 1111222222221 126777788777654444444
Q ss_pred CcceEEEEEe--CCCCEEEeec----------------------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC-C
Q 042146 100 TNYVFCINFN--PQSNRIVSDT----------------------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD-G 154 (262)
Q Consensus 100 ~~~v~~~~~~--~~~~~l~~~~----------------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~ 154 (262)
...+-...|. .++..++-.- -...|.-.|+.+++....+. -...+..+.|+|. .
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 4444444443 3555543211 02345556777776544443 3455667777773 3
Q ss_pred CEEEEE
Q 042146 155 TMIVTS 160 (262)
Q Consensus 155 ~~l~~~ 160 (262)
..+.-|
T Consensus 201 ~li~fC 206 (386)
T PF14583_consen 201 TLIMFC 206 (386)
T ss_dssp EEEEEE
T ss_pred CEEEEe
Confidence 344443
No 405
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=95.80 E-value=0.87 Score=37.44 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=24.9
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+..|.+++..+..+.|++.. .+|.|.+|++.
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~--~~~~Iq~w~l~ 219 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLT--SDGSIQVWDLG 219 (422)
T ss_dssp ---EEEEEEETTTTEEEEEE--SSE-EEEEEE-
T ss_pred hhceeeEEecCCcCEEEEEe--CCCcEEEEEEe
Confidence 34499999999999999999 89999999986
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.77 E-value=0.079 Score=39.05 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEE
Q 042146 176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMK 255 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~ 255 (262)
+++|++-+.+|.+++||+.+++.+..-..-.+- +.... ..+. .....|..+..+.+|.-+++-+ +|..+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl---l~~~~-~~~~----~~~~~i~~~~lt~~G~PiV~ls---ng~~y 90 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL---LNSSP-VSDK----SSSPNITSCSLTSNGVPIVTLS---NGDSY 90 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHH---hcccc-cccC----CCCCcEEEEEEcCCCCEEEEEe---CCCEE
Confidence 456666777777888887776654332110000 00000 0000 2566788889998888888775 57888
Q ss_pred EEeec
Q 042146 256 IWTQE 260 (262)
Q Consensus 256 iw~~~ 260 (262)
.|+.+
T Consensus 91 ~y~~~ 95 (219)
T PF07569_consen 91 SYSPD 95 (219)
T ss_pred Eeccc
Confidence 88764
No 407
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.77 E-value=1.2 Score=38.74 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=64.3
Q ss_pred cceEEEEEeC--CCCEEEeecCCCeEEEEECCC-------C-------------eeeeeeecCCCCeeeEEEc--cCCCE
Q 042146 101 NYVFCINFNP--QSNRIVSDTFNETIRIWDIKT-------G-------------KCLKVLPAHSDPVTAIDFN--RDGTM 156 (262)
Q Consensus 101 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~ 156 (262)
..|+.|.+.. ....|+.+.+||.|.+|.+++ . ++...+. -...++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 4566666554 566789999999999997631 0 0111122 24578999998 77888
Q ss_pred EEEEeCCCeEEEEeCCC----------------------------CCcc-EEEEEcCCCeEEEEec
Q 042146 157 IVTSSYDGLYRILDAST----------------------------PNGK-FILVGTLDNTLRLWNY 193 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~----------------------------~~~~-~l~~~~~dg~i~i~d~ 193 (262)
+|+++....|.||-... +.|. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888875432 2232 7888899999998887
No 408
>PRK10115 protease 2; Provisional
Probab=95.75 E-value=1.3 Score=38.99 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=65.2
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
.+..+.++|++++|+.+...+--.-+ .|++.|+.++..+........ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~------------------------------~l~v~d~~tg~~l~~~i~~~~--~ 175 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQY------------------------------GIRFRNLETGNWYPELLDNVE--P 175 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEE------------------------------EEEEEECCCCCCCCccccCcc--e
Confidence 36667788888877766433221111 467777777654322211111 4
Q ss_pred EEEEeCCCCEEEeecC-C-----CeEEEEECCCC--eeeeeeecCCCCee-eEEEccCCCEEEEEeC---CCeEEEEeCC
Q 042146 105 CINFNPQSNRIVSDTF-N-----ETIRIWDIKTG--KCLKVLPAHSDPVT-AIDFNRDGTMIVTSSY---DGLYRILDAS 172 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~~~d~~ 172 (262)
.++|.+|++.|+-... + ..|..+++.++ +-...+........ .+..+.++++++..+. ++.+.+++..
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 5899998886654432 2 36888888877 33333333233333 3333447776655443 3568888854
Q ss_pred C
Q 042146 173 T 173 (262)
Q Consensus 173 ~ 173 (262)
.
T Consensus 256 ~ 256 (686)
T PRK10115 256 L 256 (686)
T ss_pred C
Confidence 4
No 409
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.0044 Score=49.77 Aligned_cols=118 Identities=14% Similarity=0.285 Sum_probs=85.2
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC----------
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST---------- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~---------- 173 (262)
...|-|.+.-++.++.+..+..|| +.++...... ..+....++|..++..+ +.+-..+.+.+||+.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 456777666688888888999999 4455555543 35566788898888754 4556789999999887
Q ss_pred ----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE
Q 042146 174 ----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII 243 (262)
Q Consensus 174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 243 (262)
+....++.+...|.+.||+..+.+.+..... |..+++++++.+.+..+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk----------------------h~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK----------------------HQRRGTQIAVTLEDYVI 174 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc----------------------cccceeEEEecccceee
Confidence 5667788888888899998776555544433 77788888888876654
Q ss_pred EEe
Q 042146 244 ASG 246 (262)
Q Consensus 244 ~~~ 246 (262)
..+
T Consensus 175 l~d 177 (615)
T KOG2247|consen 175 LCD 177 (615)
T ss_pred ecC
Confidence 433
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.68 E-value=0.79 Score=37.17 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=53.1
Q ss_pred eEEEEecCCCccceecccCC--cceEEEEEeC--CCCEEEeec-CCCeEEEEEC-CCCe----eeeeeecC---------
Q 042146 81 TIRLWDVPTATSLKTLIGHT--NYVFCINFNP--QSNRIVSDT-FNETIRIWDI-KTGK----CLKVLPAH--------- 141 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~-~dg~i~vwd~-~~~~----~~~~~~~~--------- 141 (262)
.+.+||+.+.+.++++.--. .....+.|.. +..+-++|+ -..+|..|-- +.++ .+-.+...
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 89999999999888775332 3466777765 444433332 3344544432 3331 22222110
Q ss_pred --------CCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCCCCccEEE
Q 042146 142 --------SDPVTAIDFNRDGTMIVTSS-YDGLYRILDASTPNGKFIL 180 (262)
Q Consensus 142 --------~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~l~ 180 (262)
..-|++|..|.|.++|+.++ ..|.++.||+..|....++
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 23479999999998877666 7888999998887766654
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.65 E-value=0.31 Score=40.68 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=71.3
Q ss_pred CcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee--
Q 042146 22 HLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT-- 95 (262)
Q Consensus 22 h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~-- 95 (262)
.-+.|..+.|.|- ..-|++....+.|.+|.+..... +..+.+..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~------------------------------e~~K~l~sQt 104 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT------------------------------ERNKLLMSQT 104 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc------------------------------ccccceeeee
Confidence 3456899999885 33566667788999997642110 11111111
Q ss_pred --cc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--eeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEE
Q 042146 96 --LI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRIL 169 (262)
Q Consensus 96 --~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~ 169 (262)
+. ...---..+.|||....|++-.....-.+++++.. +....+ ...+-|.|.+|.+||+.|+++- ..=.-++|
T Consensus 105 cEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiW 183 (671)
T PF15390_consen 105 CEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIW 183 (671)
T ss_pred eeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEe
Confidence 00 00011234679998888877665555455666532 333334 3467899999999999776664 33456788
Q ss_pred eCC
Q 042146 170 DAS 172 (262)
Q Consensus 170 d~~ 172 (262)
|-.
T Consensus 184 d~~ 186 (671)
T PF15390_consen 184 DSA 186 (671)
T ss_pred cCc
Confidence 744
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.64 E-value=0.083 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.7
Q ss_pred cceEEEEEeCCC---CEEEeecCCCeEEEEECCCC
Q 042146 101 NYVFCINFNPQS---NRIVSDTFNETIRIWDIKTG 132 (262)
Q Consensus 101 ~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~ 132 (262)
+.|.+++|+|.+ .+|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999844 47777777899999999853
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.64 E-value=0.56 Score=34.08 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=36.4
Q ss_pred CEEEeecCCCeEEEEECCC--CeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 113 NRIVSDTFNETIRIWDIKT--GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 113 ~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
..|+.+...+.|.+|++.. .++...+.. -+.|..+.++..|+++++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 4444445667899999983 345556643 4789999999999999987544
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.63 E-value=0.55 Score=41.14 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=27.3
Q ss_pred cccceEEEEEcCC---CCeEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~---~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+...|..+.|||. +..|+.-. .|+++|+||+.+
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLt--sdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLT--SDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEe--cCCEEEEEecCC
Confidence 5678999999997 46777777 799999999863
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=95.39 E-value=1.4 Score=36.98 Aligned_cols=61 Identities=8% Similarity=0.033 Sum_probs=33.1
Q ss_pred CCCEEEeecCC--CeEEEEECCCCeee--eeeecCCCCeeeEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 042146 111 QSNRIVSDTFN--ETIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRDGTMIVTSSYDG---LYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d--g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~ 173 (262)
++.+.+.|+.+ ..+..||..+++-. ..+.........+ .-+++..+.|+.++ .+..||.++
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence 56777777754 35788887765322 1221111111122 22577777777553 466787665
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.36 E-value=0.24 Score=36.57 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=43.1
Q ss_pred EeCCCCEEEeecCCCeEEEEECCCCeeeeee-------e-------cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-------P-------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 108 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3446888999999999999999988754322 1 2345667777776666555443 4566666654
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.30 E-value=0.99 Score=38.67 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=52.5
Q ss_pred EEEEeCCCCEEEeecCC------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCCe-----EEEEeC
Q 042146 105 CINFNPQSNRIVSDTFN------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDGL-----YRILDA 171 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~~d~ 171 (262)
++++. ++.+.++|+.| .++..||.++++-.. .+........... -+|.+.++|+.||. +-.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecC
Confidence 34444 45777888888 357888988765222 1211111111111 26788899998864 677776
Q ss_pred CC--------------------CCccEEEEEcCCC------eEEEEecCCCc
Q 042146 172 ST--------------------PNGKFILVGTLDN------TLRLWNYSTRK 197 (262)
Q Consensus 172 ~~--------------------~~~~~l~~~~~dg------~i~i~d~~~~~ 197 (262)
.+ .++...++|+.++ .+..||..+.+
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 65 3566666666443 35566665543
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.29 E-value=1 Score=34.98 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=55.1
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc-ce-ecccC
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS-LK-TLIGH 99 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~-~~-~~~~~ 99 (262)
-.+.+..+.-+++|+++++++.-....-|+- ++. -. .-...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~-------------------------------------G~~~w~~~~r~~ 185 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDP-------------------------------------GQTTWQPHNRNS 185 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-T-------------------------------------T-SS-EEEE--S
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecC-------------------------------------CCccceEEccCc
Confidence 3467888888899998888876655555532 211 11 11224
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEEC-CCCeeeee----eecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDI-KTGKCLKV----LPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
...|..|.|.|++.+.+.+ ..|.|+.=+. .....-.. +..-.-.+..++|.++....++|+..
T Consensus 186 ~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 186 SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 5789999999998877655 7888887762 22221111 11122347899999887776666543
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.25 E-value=2 Score=38.12 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
++..++.++.|+.+.-.|.++++.+..+
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDF 286 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEe
Confidence 4567888888999999999999888765
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.24 E-value=1.8 Score=37.30 Aligned_cols=90 Identities=14% Similarity=0.310 Sum_probs=59.0
Q ss_pred eEEEEecCCCccceecc-cCCcceEEEEEe--CCCCEEEeecCCCeEEEEECCC---------Ceeeeee--ecCC-CCe
Q 042146 81 TIRLWDVPTATSLKTLI-GHTNYVFCINFN--PQSNRIVSDTFNETIRIWDIKT---------GKCLKVL--PAHS-DPV 145 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~--~~~~-~~v 145 (262)
.+.|||...+....... ...+.|..+.|. |+++.+++.+....|.+|.-.. -.++..+ ..|+ .+|
T Consensus 52 ~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~I 131 (631)
T PF12234_consen 52 ELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPI 131 (631)
T ss_pred EEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCc
Confidence 47788877666433221 346789999996 4888888888889999985421 1222322 3344 579
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+..|.++|..++.++ ..+.++|-.
T Consensus 132 gds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 132 GDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cceeEecCCeEEEEeC--CEEEEECCC
Confidence 9999999987665543 456666643
No 421
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.22 E-value=0.92 Score=33.97 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=71.3
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-C--CeEEEEECCC--Ceeee-----eeecCCCCeeeEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-N--ETIRIWDIKT--GKCLK-----VLPAHSDPVTAIDF 150 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vwd~~~--~~~~~-----~~~~~~~~v~~~~~ 150 (262)
.=.+||+.+.+..-.......-..+-.+.|+|+++.+|+. + ..+++++... ..+-. .+. ....-.....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 5568898876543211112222333456789999998875 2 3578887644 11111 111 1112233444
Q ss_pred ccCCCEEEEEeCCCe-EEEEeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146 151 NRDGTMIVTSSYDGL-YRILDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~-i~~~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
-|||+.|+.|+.... ..+|.-.. |+|+.++.+..++ .|||..+.+.++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 579999999887643 33333211 8899998888654 467888887777
Q ss_pred EEecc
Q 042146 201 TYSGY 205 (262)
Q Consensus 201 ~~~~~ 205 (262)
.++.-
T Consensus 204 ~lP~l 208 (243)
T PF07250_consen 204 TLPDL 208 (243)
T ss_pred eCCCC
Confidence 77653
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.16 E-value=0.046 Score=47.56 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCceeeec-ccccceecccCcCceEEEEE-----------ccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146 4 DRSLESFR-PYTLTQTLNGHLRAVSYVKF-----------SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71 (262)
Q Consensus 4 d~~i~~~~-~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 71 (262)
++++..+. .......+.+|...+..++| ||||..||+++.||.++.|
T Consensus 204 ~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~--------------------- 262 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY--------------------- 262 (1283)
T ss_pred CCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee---------------------
Confidence 34444443 22334555668777776664 7888888888889988888
Q ss_pred CccccccceeEEEEecCCCccceecccCC-cceEEEEEeCCC---------CEEEeecC-CCeEEEEECCCCeee
Q 042146 72 HEQGISDLATIRLWDVPTATSLKTLIGHT-NYVFCINFNPQS---------NRIVSDTF-NETIRIWDIKTGKCL 135 (262)
Q Consensus 72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~~~~~-dg~i~vwd~~~~~~~ 135 (262)
.+++.+.....+++.++.|. .+-.|.-++.+. .++++++. +..+++|....-+|+
T Consensus 263 ---------Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 ---------QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ---------eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 46666666667777777766 333333344322 23444443 345788876554444
No 423
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.37 Score=39.70 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=42.9
Q ss_pred CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC---CeEEEeeecC
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK---NIIASGALDN 250 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~d~ 250 (262)
+.|..++..+.+|.+..+=.+....-..+......+.|. .+.-....+.....-.+..++|||+. ..|..-+ .
T Consensus 113 ~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CR--t~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~--s 188 (741)
T KOG4460|consen 113 PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCR--TTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT--S 188 (741)
T ss_pred CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEE--eecccceeeccCCceeeeeccccCCccCCceEEEEe--c
Confidence 556666666667755443222211112222211122221 22222222222233457889999975 4565556 7
Q ss_pred CCcEEEEeecc
Q 042146 251 DRTMKIWTQEK 261 (262)
Q Consensus 251 d~~i~iw~~~~ 261 (262)
|..||+|+..+
T Consensus 189 dnviRiy~lS~ 199 (741)
T KOG4460|consen 189 DNVIRIYSLSE 199 (741)
T ss_pred CcEEEEEecCC
Confidence 89999999864
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.99 E-value=1.5 Score=35.26 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=32.3
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCC-----e--ee-eeeec----CCCCeeeEEEccCCCEEEEEe
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-----K--CL-KVLPA----HSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~--~~-~~~~~----~~~~v~~~~~~~~~~~l~~~~ 161 (262)
.....+++.+++ ++ +++.....++.|.... + .+ ..+.. +......++|.|||.+.++-+
T Consensus 72 ~~p~Gi~~~~~G-ly-V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVGG-VY-VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCccceeEecCC-EE-EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 345788898888 44 4444433334354311 1 11 12222 123467899999998666554
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.98 E-value=1.2 Score=34.22 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecC
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLS 53 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~ 53 (262)
.--+.|+++|.+.+-++....+...+||..
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCC
Confidence 345789999999988888888999999876
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.86 E-value=2.1 Score=36.14 Aligned_cols=147 Identities=10% Similarity=0.160 Sum_probs=76.0
Q ss_pred cceEEEEEeCCCCEEEeec---CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC----CCEEEEEeCCCeEEEEeCCC
Q 042146 101 NYVFCINFNPQSNRIVSDT---FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD----GTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~~d~~~ 173 (262)
.++..++|. ||+.++-.. .+|.+++=| .+.+..| ..|..+.|.|- ...|++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467888887 566544321 233333222 2233333 34889999983 33566667788999998763
Q ss_pred ---CCccEEEEEcCC--------CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee--EEccccceEEEEEcCCC
Q 042146 174 ---PNGKFILVGTLD--------NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY--IVSHRDPVISVASHPAK 240 (262)
Q Consensus 174 ---~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~ 240 (262)
..++.+++-..+ ..=.+|..+ ...+..+...+..+. .....++.++ -....+.|.|.+|.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvSV~---~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVSVL---PSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCceeEe---eeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 233344332111 000245543 233333333221111 0111122222 12367889999999999
Q ss_pred CeEEEeeecCCCcEEEEeec
Q 042146 241 NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 241 ~~l~~~~~d~d~~i~iw~~~ 260 (262)
+.|+.+-. ..=.-++||-.
T Consensus 168 ~RLVVAvG-SsLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVG-SSLHSYIWDSA 186 (671)
T ss_pred CEEEEEeC-CeEEEEEecCc
Confidence 98877641 22334678743
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.33 Score=43.71 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=73.6
Q ss_pred CceEEEEEccCCCeEEE--ecCCCeEEEeecCCCCCCCCCCCCCCcccc-CCcccc------------------ccceeE
Q 042146 24 RAVSYVKFSHDGRLLTS--SSAEKTLLTYSLSSISNFDSTPPSPLQKFT-GHEQGI------------------SDLATI 82 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~v------------------~~~~~i 82 (262)
-++..+...+|+...++ .+.+-.|..||+............++..-. .....+ .....|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35667777888665444 344558999999876544332222111100 000000 001122
Q ss_pred EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEE
Q 042146 83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 158 (262)
++..+........--......++++|+|.|++++.|-..|++.-|... .+....+.+ ....|.++.|-....+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 222222111111111244668999999999999999999999999754 332233221 136789999986555544
Q ss_pred E
Q 042146 159 T 159 (262)
Q Consensus 159 ~ 159 (262)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.83 Score=41.38 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=73.5
Q ss_pred cceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeee-----eee------cCCCCeeeEEEccCC-CEEEEEeCCCeE
Q 042146 101 NYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLK-----VLP------AHSDPVTAIDFNRDG-TMIVTSSYDGLY 166 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i 166 (262)
-++..+.+.+|+...++ .+.+-.|..||+++-.... -+. .......++.|.|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666677777665443 3344478999997532111 111 122345678888843 346667788888
Q ss_pred EEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 167 RILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 167 ~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
++..+.. +.|+.++.|-..|++.-|-.. ++....+......
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~------------------ 241 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE------------------ 241 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC------------------
Confidence 8777654 566677777777766665432 3333333322111
Q ss_pred cccceEEEEEcCCCCeEEEe
Q 042146 227 HRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~ 246 (262)
-..+|.++.|-....+++.-
T Consensus 242 e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 242 ENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CCcceeEEEEecceeEEEEe
Confidence 23567888887766666554
No 429
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.76 E-value=1.5 Score=34.12 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=61.2
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-----eeeEEEccCCCEEEEEeCCCeEEEEeCCCCCc
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-----VTAIDFNRDGTMIVTSSYDGLYRILDASTPNG 176 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 176 (262)
-++++...++|.+|++.-.-..|.+.|.++++.+..+.+.... -...++-.+-+.+-.+..++.|.+||-.....
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~ 224 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF 224 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC
Confidence 3788888889999999998899999999999999998665221 11244444555555567888999998742111
Q ss_pred cEEEEEcCCCeEEEEecCC
Q 042146 177 KFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d~~~ 195 (262)
--.....+.+.-.|..+
T Consensus 225 --~~~~~s~~~v~~ld~~~ 241 (299)
T PF14269_consen 225 --NGTEPSRGLVLELDPET 241 (299)
T ss_pred --CCCcCCCceEEEEECCC
Confidence 11122334555566653
No 430
>PHA03098 kelch-like protein; Provisional
Probab=94.72 E-value=1.5 Score=37.35 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCCEEEeecCC------CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC--------CeEEEEeCCC
Q 042146 111 QSNRIVSDTFN------ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD--------GLYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~ 173 (262)
+++..+.|+.+ ..+..||+.+++-... +...... .+++ ..++..++.|+.+ ..+..||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 56666666632 3588899876643211 1111111 1222 2355666666643 2378888765
No 431
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.70 E-value=1.8 Score=34.70 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=45.3
Q ss_pred ecCCCccceecccCCcceEEE-----EEeCCCCEEEeec-CCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 86 DVPTATSLKTLIGHTNYVFCI-----NFNPQSNRIVSDT-FNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 86 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
|..+|..+..+.........+ +|.++|+.|+.++ .+| .+.+.|+.+++..+.-.+.........++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777666665433322223 4667887765544 344 68888999887655443322223356677888877
Q ss_pred EEEeCCCeEEEEeCCC
Q 042146 158 VTSSYDGLYRILDAST 173 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~ 173 (262)
+-......|.-.|+.+
T Consensus 96 ~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDT 111 (386)
T ss_dssp EEEETTTEEEEEETTT
T ss_pred EEEECCCeEEEEECCc
Confidence 6666667888888887
No 432
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.56 E-value=1.5 Score=33.17 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=67.0
Q ss_pred cceEEEEEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCC-CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146 101 NYVFCINFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHS-DPVTAIDFNRDGTMIVTSSYDGLYRILDAST---- 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---- 173 (262)
.-...+.|..++.++-+.+.-| .|+.+|+.+++......-.. ----.++.. +.+...-.=.++...+||..+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3466788877888877777666 79999999998766553322 112223333 223333344678888888876
Q ss_pred -------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+++.|+.......|+++|..+.+....+..
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 5778888888888999999998887777654
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.03 E-value=4.2 Score=36.24 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC--------eeeEEEcc----------------CCCEEEEEeCCCeE
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP--------VTAIDFNR----------------DGTMIVTSSYDGLY 166 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i 166 (262)
.+..++.++.++.|.-.|.++++.+..+...... ...+.+.. .+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3667777888899999999999998887542211 11122211 23467777778877
Q ss_pred EEEeCCC----------------------------------CCccEEEEEcC----------CCeEEEEecCCCceeeEE
Q 042146 167 RILDAST----------------------------------PNGKFILVGTL----------DNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 167 ~~~d~~~----------------------------------~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 202 (262)
.-.|..+ -.+..+++|+. +|.|+-+|.++|+++..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 7666554 01345666642 688999999999999887
Q ss_pred ec
Q 042146 203 SG 204 (262)
Q Consensus 203 ~~ 204 (262)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 64
No 434
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.87 E-value=0.61 Score=39.80 Aligned_cols=38 Identities=21% Similarity=0.551 Sum_probs=28.6
Q ss_pred cceEEEEEeC----CCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 101 NYVFCINFNP----QSNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 101 ~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
..+..+++++ +..++++.+.|+++++||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566665 7789999999999999999999986654
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.86 E-value=4.4 Score=35.84 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=54.6
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCC---------Cee---eeee--------ecCCCCeeeEEEccC---CCEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKT---------GKC---LKVL--------PAHSDPVTAIDFNRD---GTMI 157 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~---~~~~--------~~~~~~v~~~~~~~~---~~~l 157 (262)
-.|..+.++|+|.+++..+..|...+.=.+. ++. .+.+ ..+...|..+.|+|. +.+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688999999999999888766544432221 111 1111 123457899999995 5789
Q ss_pred EEEeCCCeEEEEeCCCCCccEE
Q 042146 158 VTSSYDGLYRILDASTPNGKFI 179 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~~~~~~l 179 (262)
++-..|+++++||+..+.....
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeE
Confidence 9999999999999987555443
No 436
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=2.5 Score=32.41 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=55.4
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+....+.++.|+|+.+.|++......-.|+=-.+|+.++.+.-. -.....+++..++.+.++--.++.+.++.+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 44455999999999998888887777777766678888877431 22346678887777777777788888776553
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=1 Score=41.33 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=30.6
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.++|..++.....+.+.+-+ +.|+|++|++..
T Consensus 241 ~~dpI~qi~ID~SR~IlY~ls--ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLS--EKGTVSAYDIGG 273 (1311)
T ss_pred CCCcceeeEeccccceeeeec--cCceEEEEEccC
Confidence 788999999999999999999 899999999875
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=2.2 Score=30.96 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=77.6
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (262)
.|++||+.+++.+.+..-....+..=-...-+..+. -.-.+|.-..+|.++-+++..+. ..+.-+.++. |+..|+.
T Consensus 69 ~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~Lim 145 (262)
T COG3823 69 KIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIM 145 (262)
T ss_pred eeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEe
Confidence 577778877776654322111111111111133332 23457888888988877776664 3444455553 4555666
Q ss_pred EeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 160 SSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 160 ~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
++...+++.-|..+ -+|...+--=.+..|...+..+|+.+.-+....-.
T Consensus 146 sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~------- 218 (262)
T COG3823 146 SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL------- 218 (262)
T ss_pred eCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc-------
Confidence 66666666655443 23333332223333444555666665554421110
Q ss_pred EecCCCeeEEccccceEEEEEcCCCC-eEEEe
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKN-IIASG 246 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~ 246 (262)
..-.....+..-.+.+++.|++. +++||
T Consensus 219 ---~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 219 ---KELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ---hhcCccccccccccceeecCcCCeEEEec
Confidence 00000111556778999999885 55554
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=1.2 Score=36.32 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=66.3
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
..++|.++.||+|.+.||+--.|..|.+.+..... ...+...+.+....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~-------------------------------~~l~~~~~ck~k~~ 113 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN-------------------------------SQLEYTQECKTKNA 113 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCc-------------------------------hhhHHHHHhccCcc
Confidence 46799999999999999999999998888653310 01111222233345
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.|....|..+ .-+|..+..| +-+|.... .+.++..+.|+..|.-..|.++.+.++-+
T Consensus 114 ~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 114 NILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred eeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 5788888765 4444444344 34444322 23345556678888888888887754433
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.19 E-value=5.5 Score=34.92 Aligned_cols=31 Identities=6% Similarity=0.044 Sum_probs=23.0
Q ss_pred cccceEEEEEcCCC-----C-eEEEeeecCCCcEEEEee
Q 042146 227 HRDPVISVASHPAK-----N-IIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 227 ~~~~v~~~~~~p~~-----~-~l~~~~~d~d~~i~iw~~ 259 (262)
+...|.+|+|-++. . .|++++ =.|.+-+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 56678899997643 2 566666 7789988887
No 441
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.10 E-value=0.61 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCCCEEEee-cCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 110 PQSNRIVSD-TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 110 ~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
|++++|+++ ..++.|.++|+.+++.+..+.... .-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 567766554 457899999999888887776533 2344544
No 442
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.99 E-value=3.1 Score=32.09 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=50.7
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec------CCCeEEEEECCCCeeeeeeec-----CCCCeeeEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT------FNETIRIWDIKTGKCLKVLPA-----HSDPVTAID 149 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~ 149 (262)
.|++||..+.+....-.+-.+.|+.|.|..+.+++++|. ....+..||+.+..- ..+.. -.++|..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEE
Confidence 588888877665554455668899999986666666654 455788899876643 23322 236788887
Q ss_pred Ecc-CCCEEE
Q 042146 150 FNR-DGTMIV 158 (262)
Q Consensus 150 ~~~-~~~~l~ 158 (262)
+.. ++..+.
T Consensus 96 ~~~~d~~~~~ 105 (281)
T PF12768_consen 96 FISNDGSNFW 105 (281)
T ss_pred eeccCCceEE
Confidence 754 444344
No 443
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=3.4 Score=31.76 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=59.1
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC----
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP---- 174 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---- 174 (262)
.-+..+.++ +++++.+..+.-+++.|+.+......+.. -.+--.++.. .|++..++..|.-+.+.|+..|
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566665 66777777777899999976543333221 1133344444 5889999997777888898873
Q ss_pred -----------------CccEEEEEcCCCeEEEEecCCCc
Q 042146 175 -----------------NGKFILVGTLDNTLRLWNYSTRK 197 (262)
Q Consensus 175 -----------------~~~~l~~~~~dg~i~i~d~~~~~ 197 (262)
.|++-..+..|+-+.+-|+....
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCC
Confidence 24455555567777777776543
No 444
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.85 E-value=1.5 Score=37.39 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=26.7
Q ss_pred CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
+..++++-+.|+.+|+||+.+++++.+..-.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 6678999999999999999999997776543
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.79 E-value=2.1 Score=30.24 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=24.9
Q ss_pred cceEEEEEeCCC------CEEEeecCCCeEEEEECCC
Q 042146 101 NYVFCINFNPQS------NRIVSDTFNETIRIWDIKT 131 (262)
Q Consensus 101 ~~v~~~~~~~~~------~~l~~~~~dg~i~vwd~~~ 131 (262)
..+..++|+|.| -+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999933 4688889999999998653
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=5.2 Score=34.88 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.2
Q ss_pred eeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC
Q 042146 7 LESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS 54 (262)
Q Consensus 7 i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 54 (262)
|++|. .++++..+....+++-.|.|+.+.. |+....+|++.+|++-.
T Consensus 66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 66 IRIFNISGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG 113 (829)
T ss_pred EEEEeccccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch
Confidence 44554 3445555544455888999988765 66678999999999755
No 447
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.37 E-value=2.8 Score=36.58 Aligned_cols=33 Identities=3% Similarity=0.125 Sum_probs=27.7
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCC
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI 55 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 55 (262)
..-++++.-+|.+..++.+..||.|++|+....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 455778888899999999999999999987553
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=92.28 E-value=6.1 Score=33.21 Aligned_cols=58 Identities=7% Similarity=-0.168 Sum_probs=30.0
Q ss_pred CCCEEEeecCCC---eEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 111 QSNRIVSDTFNE---TIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+++..+.|+.++ .+..||+++.+-.. .+....... +++ .-++...+.|+ .+..||..+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCC
Confidence 577777777553 47788987664322 111111111 221 23455556553 466777665
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=6.8 Score=36.45 Aligned_cols=71 Identities=18% Similarity=0.438 Sum_probs=50.6
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEEC----CCC---e-e----------------eeeee-cCCCCeeeEEEccCC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDI----KTG---K-C----------------LKVLP-AHSDPVTAIDFNRDG 154 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~ 154 (262)
...|+|+....+|+.+++|- || .+|.+ ..+ + + +..+. .+..+|..++.....
T Consensus 178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 45688888777888777766 45 44543 221 1 1 11222 456799999999888
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 042146 155 TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~ 173 (262)
..+.+-+..|+|..||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999876
No 450
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.14 E-value=6.8 Score=33.40 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=35.5
Q ss_pred eEEEEecCCCccceecccCC-cceEEEEEeC--CCCEEEeec------CCCeEEEEECCCCeeeeeee
Q 042146 81 TIRLWDVPTATSLKTLIGHT-NYVFCINFNP--QSNRIVSDT------FNETIRIWDIKTGKCLKVLP 139 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~ 139 (262)
.|.-.|.++++.+....... ..-..+.-.| .+..++++. .+|.|.-+|.++++.+..+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 67888888898877654211 0001111122 133455543 26899999999999887754
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.13 E-value=0.052 Score=44.00 Aligned_cols=142 Identities=16% Similarity=0.241 Sum_probs=87.3
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccc----cCCcccc--ccceeEEEEecCCCcccee
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF----TGHEQGI--SDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~v--~~~~~i~v~d~~~~~~~~~ 95 (262)
|-..-....|-|++.-++.++.+-.+..||-..........+.....+ .+....+ ...+.+.+||+.+......
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 444445667888877799999999999998655333222222221111 1111111 1112689999865432211
Q ss_pred cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
-.+-...-.-+.|++....++.+-..|.+.+++-.+.+.+-....|...++++++.+.+. .+.++.|.
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 111111222277888888899998999999999888777666655888999999998664 44444443
No 452
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.69 E-value=5.8 Score=32.01 Aligned_cols=60 Identities=8% Similarity=0.064 Sum_probs=37.3
Q ss_pred cceEEEEEeCCCCEEEeecC-------------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146 101 NYVFCINFNPQSNRIVSDTF-------------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (262)
.....++|.|+|.+.++-+. .|.|.-++...++....-.++ .....++|+|+|+++++-.
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 44678889999887664441 145666666655432222232 3347899999998876644
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.66 E-value=5.1 Score=33.43 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=65.4
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCC-------CEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQS-------NRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR- 152 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~- 152 (262)
++-.|++.|+.+..+.-|... -+.+.|+. ..-+.|-++..|.-.|++-. ..+... .....++.-.|+.
T Consensus 492 LykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~ 568 (776)
T COG5167 492 LYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSG 568 (776)
T ss_pred ceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-eehhcccccccccc
Confidence 455577777777777665554 45666642 22345556777777787633 222221 1222223333332
Q ss_pred ---CCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecC
Q 042146 153 ---DGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 153 ---~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
.+.++++++..|-|++||.-. .+|.++++.|. ..+.+-|++
T Consensus 569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 345899999999999999543 67777776664 356666654
No 454
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=91.15 E-value=2.4 Score=26.21 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=28.2
Q ss_pred ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (262)
+..+|.+..||+.+++....+.+ -...+.++++||+..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 44478899999998875444443 33568899999999766653
No 455
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.04 E-value=8.3 Score=34.52 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=47.0
Q ss_pred CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM 254 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i 254 (262)
-+.+++..-.||+|.++|..+.+.+......+.....+...+... +-..+..++..++|||.+..++.-. .+|.+
T Consensus 270 ~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~G---f~fp~~~~~~~vafSPt~c~~v~~~--~~~~~ 344 (753)
T PF11635_consen 270 LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAG---FHFPCIQPPLHVAFSPTMCSLVQID--EDGKT 344 (753)
T ss_pred cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccc---cccccCCCCceEEECcccceEEEEe--cCCCc
Confidence 356788889999999999998877765511111111111110000 0001233677899999999999888 78886
Q ss_pred E
Q 042146 255 K 255 (262)
Q Consensus 255 ~ 255 (262)
.
T Consensus 345 ~ 345 (753)
T PF11635_consen 345 K 345 (753)
T ss_pred e
Confidence 5
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.90 E-value=1.2 Score=22.52 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCccEEEEEc-CCCeEEEEecCCCceeeEEec
Q 042146 174 PNGKFILVGT-LDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 204 (262)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 3455555544 567899999988888877764
No 457
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.78 E-value=0.81 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 112 SNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
+..++.++.+|.+..+|.++++.+..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 336778888999999999999877654
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.59 E-value=3.2 Score=29.36 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=16.5
Q ss_pred eEEEEEeCCCCEEEeecCCCeEEEEE
Q 042146 103 VFCINFNPQSNRIVSDTFNETIRIWD 128 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg~i~vwd 128 (262)
..+++|+.||++.++++ ..|.|.+
T Consensus 7 ~~~l~WS~Dg~laV~t~--~~v~IL~ 30 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATG--ESVHILD 30 (173)
T ss_pred CcCeeECCCCCEEEEcC--CeEEEEe
Confidence 46899999986655543 4677773
No 459
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.34 E-value=7.8 Score=30.77 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEee
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYS 51 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~ 51 (262)
..+.|+|.|||++|++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999987665 5599999997
No 460
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.18 E-value=0.95 Score=21.58 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=18.1
Q ss_pred EEEEEcCCCeEEEEecCCCceeeE
Q 042146 178 FILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 178 ~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
.+++++.+|.+..+|.++|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 566677788888888888877654
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.06 E-value=6.6 Score=29.54 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=39.3
Q ss_pred EEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-C--CeEEEEeCCC--------------------------CC
Q 042146 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-D--GLYRILDAST--------------------------PN 175 (262)
Q Consensus 125 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~~~d~~~--------------------------~~ 175 (262)
.+||+.+++....-.....-..+-.+-+||+++.+|+. + ..+++++... +|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 56787776542221112223333456678888888764 2 3467776422 78
Q ss_pred ccEEEEEcCCC-eEEEEe
Q 042146 176 GKFILVGTLDN-TLRLWN 192 (262)
Q Consensus 176 ~~~l~~~~~dg-~i~i~d 192 (262)
|+.|+.|+... ...+|.
T Consensus 129 G~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CCEEEEeCcCCCcccccC
Confidence 88888888663 334444
No 462
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.90 E-value=1.4 Score=22.05 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.1
Q ss_pred EEEeecCCCeEEEEECCCCeeeeeeec
Q 042146 114 RIVSDTFNETIRIWDIKTGKCLKVLPA 140 (262)
Q Consensus 114 ~l~~~~~dg~i~vwd~~~~~~~~~~~~ 140 (262)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999988864
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.81 E-value=4.4 Score=27.15 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=59.3
Q ss_pred EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------------ccceeEEEEecC
Q 042146 28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------------SDLATIRLWDVP 88 (262)
Q Consensus 28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~i~v~d~~ 88 (262)
.-.|......|+.++.-|+|.|++..............+..+ .-...+ .....+..||++
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 445666667888888899999998654322111111111111 111111 112278888987
Q ss_pred CCccceecccCCcceEEEEEeC----CCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 89 TATSLKTLIGHTNYVFCINFNP----QSNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
....+.. +.-.+.|+++.+-. ..+++++|+ +..|.-||.+-.+..++.
T Consensus 82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhh-hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 7655432 22346677777633 345555655 677888886655555443
No 464
>PRK10115 protease 2; Provisional
Probab=89.39 E-value=15 Score=32.61 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=46.7
Q ss_pred cceEEEEEeCCCCEEEeec-----CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC------CeEEEE
Q 042146 101 NYVFCINFNPQSNRIVSDT-----FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD------GLYRIL 169 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~ 169 (262)
-.+..+.++|++++|+.+. ....|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3467788999999887532 233699999988864322211111 459999998866655432 357777
Q ss_pred eCCCC
Q 042146 170 DASTP 174 (262)
Q Consensus 170 d~~~~ 174 (262)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 77763
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.37 E-value=1.7 Score=21.73 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=21.3
Q ss_pred cccceEEEEEcCCCCeEEEeeecCC--CcEEEE
Q 042146 227 HRDPVISVASHPAKNIIASGALDND--RTMKIW 257 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d--~~i~iw 257 (262)
....-...+|+|||+.|+-++. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~-~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN-RNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE-CT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEec-CCCCCCcCEE
Confidence 4456678899999998887763 45 777666
No 466
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=89.12 E-value=2.7 Score=25.79 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=26.9
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~ 262 (262)
...+.|.++|++++|..++. ..+.|++++..++
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~-~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASS-LAHSIHVYKRHKD 86 (86)
T ss_pred CCCceEEEcCCCCEEEEEec-cCCeEEEEEecCC
Confidence 34578999999999888875 5789999998763
No 467
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.03 E-value=1.8 Score=21.63 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.0
Q ss_pred EEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 178 FILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 178 ~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.++.++.+|.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356669999999999999999988875
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.88 E-value=9.5 Score=29.68 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=55.1
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECC------CC-eeeeeeec-----CCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIK------TG-KCLKVLPA-----HSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
.-+.|+++|.+.+-++....+...+||.. .. ..+-.+.. .....+.+.|+......++....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------ 97 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence 45789999999888888888999999986 12 22333331 12457888888765554544221
Q ss_pred eCCCCCccEEEEEcCCCeEEEEecC
Q 042146 170 DASTPNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 170 d~~~~~~~~l~~~~~dg~i~i~d~~ 194 (262)
.....++.+++||+|.-|...
T Consensus 98 ----~~~a~Fif~tEdGTisaW~p~ 118 (336)
T TIGR03118 98 ----TGPSRFLFVTEDGTLSGWAPA 118 (336)
T ss_pred ----ccceeEEEEeCCceEEeecCc
Confidence 112346778899999999854
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=88.10 E-value=12 Score=29.83 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=33.1
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEE
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 158 (262)
...++++.+.|+++.++++. .|.+.+=....+..-..... -...+.++.+.|++..++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~ 275 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA 275 (334)
T ss_pred cccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE
Confidence 45788899999988777764 57665322333332111111 123467788887665443
No 470
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.87 E-value=21 Score=32.50 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=68.0
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccC--C--
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRD--G-- 154 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~-- 154 (262)
.|++++-. .....+... ..++..+.+.+...++.++.++.+...++..+. ++... .....|.|+.++|- +
T Consensus 471 ~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 56777654 233344332 334444455556677777777777777776555 22222 23568999999983 2
Q ss_pred --CEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecC
Q 042146 155 --TMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 155 --~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
+.++.|..+..+.+.-... .+..+|.++..||.+.-|.+.
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 2678887766554432211 458899999999988766544
No 471
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.76 E-value=12 Score=33.10 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=46.4
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
...++++.-+|.++-++.++.||+|++|+....+...... ...|-..+.|...| |+++..|+.+.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 4567788889999999999999999999986544322221 12233455665443 5666667776666543
No 472
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=19 Score=31.75 Aligned_cols=48 Identities=8% Similarity=0.315 Sum_probs=35.3
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK 130 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 130 (262)
.|+|++. +|+.+..+.-....+-.+.|+.+. .|++...+|++++|++-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 5788887 566666554444578899999655 45566789999999985
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.53 E-value=14 Score=29.96 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=31.7
Q ss_pred CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc----CCCE--EEEEe-CC---CeEEEEeCC
Q 042146 110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR----DGTM--IVTSS-YD---GLYRILDAS 172 (262)
Q Consensus 110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~~~-~d---g~i~~~d~~ 172 (262)
|...+++....++-+.+||+. |+.+..+. .+.++.+..-. .|+. |+.++ .+ .+|++|.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence 355677777888889999986 55555553 23444443321 2332 33333 32 468888654
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.22 E-value=3.5 Score=30.12 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=32.1
Q ss_pred EEEEcCCCeEEEEecC--CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 179 ILVGTLDNTLRLWNYS--TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 179 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
|+.+.....|.+|++. ..++...|. --+.|..+.++..|++|+|--
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-----------------------Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-----------------------TVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-----------------------chhheeEEEeccccceEEEEE
Confidence 3333555678888877 344555555 446788999999999998875
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.15 E-value=22 Score=32.01 Aligned_cols=127 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred CcceEEEEEe------CCCCEEEeecCCCeEEEEE------CCCC------------eeeeeeecCCCCeeeEEEcc-CC
Q 042146 100 TNYVFCINFN------PQSNRIVSDTFNETIRIWD------IKTG------------KCLKVLPAHSDPVTAIDFNR-DG 154 (262)
Q Consensus 100 ~~~v~~~~~~------~~~~~l~~~~~dg~i~vwd------~~~~------------~~~~~~~~~~~~v~~~~~~~-~~ 154 (262)
..+|..|+|. ......+..-....+.|+. +... ..+..-.....+..+++|+| +.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Q ss_pred CEEEEEeCCCeEEEEeC----CCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccc
Q 042146 155 TMIVTSSYDGLYRILDA----STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDP 230 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (262)
..||+....|...+|++ ......+-+.....|.| ++|.. ....
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-~~d~~--------------------------------e~s~ 205 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-IFDPE--------------------------------ELSN 205 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-cCCCc--------------------------------ccCc
Q ss_pred eEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146 231 VISVASHPAKNIIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 231 v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~ 262 (262)
-..+.|.++...|+.+ .-..+.++|++.+
T Consensus 206 w~rI~W~~~~~~lLv~---~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 206 WKRILWVSDSNRLLVC---NRSKLMLIDFESN 234 (765)
T ss_pred ceeeEecCCCCEEEEE---cCCceEEEECCCC
No 476
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.72 E-value=4.7 Score=24.95 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 182 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
+..+|.+..||..+++..-.+.+ -.-.+.++.+|++..|+.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-----------------------L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-----------------------LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-----------------------ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-----------------------CCccCeEEEcCCCCEEEEEe
Confidence 44567888899988775444442 22457899999999888874
No 477
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.32 E-value=13 Score=28.30 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCeEEEeeec-CCCcEEEE
Q 042146 230 PVISVASHPAKNIIASGALD-NDRTMKIW 257 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d-~d~~i~iw 257 (262)
.|..+.+||||..++....+ .++.|.+=
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 89999999999987765411 24555553
No 478
>PRK13684 Ycf48-like protein; Provisional
Probab=85.85 E-value=16 Score=29.08 Aligned_cols=58 Identities=12% Similarity=0.247 Sum_probs=33.7
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEE-EECCCCeeeeee-ecCCCCeeeEEEccCCCEEEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRI-WDIKTGKCLKVL-PAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
..+..+.+.|++.+++++. .|.+.. +|- .++.-... ..-...++++.+.|+++.++++
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg 232 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA 232 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe
Confidence 4678888888877766655 455442 221 12211111 2234578888888887765554
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.27 E-value=24 Score=29.80 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=49.9
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEEC---------CCCeeeeeee-----------cCCCCeeeEEEccCC---CEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDI---------KTGKCLKVLP-----------AHSDPVTAIDFNRDG---TMI 157 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l 157 (262)
-.|..+..++.|..++-.+.+|.+.++=. +.++..-..+ ...-.+..++|+|++ .+|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 45778888999999988888987766532 2333221111 112246778899965 578
Q ss_pred EEEeCCCeEEEEeCCC
Q 042146 158 VTSSYDGLYRILDAST 173 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~ 173 (262)
..-+.|..+++||+..
T Consensus 184 ~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEecCcEEEEEecCC
Confidence 8888899999999877
No 480
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.76 E-value=15 Score=26.96 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCCEEEeecCC--CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCCC--------------
Q 042146 111 QSNRIVSDTFN--ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAST-------------- 173 (262)
Q Consensus 111 ~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~-------------- 173 (262)
++.++.+.+.- ..|++||+++++.+...+-....+..=-...-++.+.. .=.+|....+|.++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45566665543 37999999999876654322111111111111333322 23567777788765
Q ss_pred ---CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
.++..|+.++....++.-|.++.....++
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence 45666777777778888787765444443
No 481
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=83.76 E-value=7.5 Score=33.46 Aligned_cols=84 Identities=14% Similarity=0.279 Sum_probs=56.9
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCee-----eeeeecC-----CCCeeeEEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKC-----LKVLPAH-----SDPVTAIDF 150 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~ 150 (262)
+.+-|+.+...+..++.|+.++..++|.+.+.++++++-.| .|.++.+....+ -..+..+ ...+..++|
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicf 376 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICF 376 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhh
Confidence 66667777778888999999999999999999999888665 355554321111 1111111 123556778
Q ss_pred ccCCCEEEEEeCCCe
Q 042146 151 NRDGTMIVTSSYDGL 165 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~ 165 (262)
+....+...++.+|.
T Consensus 377 s~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 377 SEVSTIRTAGSCEGE 391 (788)
T ss_pred hhhcceEeecccCCC
Confidence 888888888777664
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=43 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=27.6
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCC
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI 55 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 55 (262)
......++|+|.-..+|.+...|.|+++-....
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccce
Confidence 345677899999999999999999999976543
No 483
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=81.96 E-value=24 Score=28.06 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCee---eeee----ecCCCCeeeEEEccC
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVL----PAHSDPVTAIDFNRD 153 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~ 153 (262)
..+.|+|.|+++++++- ..|.|.+++ ..+.. +..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 35789999998877764 499999999 44432 2222 123457889999994
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.94 E-value=26 Score=28.45 Aligned_cols=140 Identities=10% Similarity=0.170 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC--Ccc-----ccCCccc--ccc-----ceeEEEEecCCC-ccceecc
Q 042146 33 HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP--LQK-----FTGHEQG--ISD-----LATIRLWDVPTA-TSLKTLI 97 (262)
Q Consensus 33 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~-----~~~~~~~--v~~-----~~~i~v~d~~~~-~~~~~~~ 97 (262)
|...+++...+.+-+.+||++............ +.. +.+.... +.. ...|++|.+... ..+..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 345688888889999999998743322211111 100 1111100 110 125778866531 1222221
Q ss_pred c-------CCcceEEEEEe--C-CCC-EEEeecCCCeEEEEECC---CC----eeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146 98 G-------HTNYVFCINFN--P-QSN-RIVSDTFNETIRIWDIK---TG----KCLKVLPAHSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 98 ~-------~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (262)
. ....+..+++. | ++. +++....+|.+..|.+. .+ ++++.+.. .+.+..++.......|+.
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence 1 11335666663 4 444 56677788988888774 22 45777764 457888988888888999
Q ss_pred EeCCCeEEEEeCCC
Q 042146 160 SSYDGLYRILDAST 173 (262)
Q Consensus 160 ~~~dg~i~~~d~~~ 173 (262)
+-.+.-|.-|+...
T Consensus 225 gEE~~GIW~y~Aep 238 (381)
T PF02333_consen 225 GEEDVGIWRYDAEP 238 (381)
T ss_dssp EETTTEEEEEESSC
T ss_pred ecCccEEEEEecCC
Confidence 99888887777663
No 485
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.90 E-value=12 Score=29.39 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=37.5
Q ss_pred cEEEEEcCCCeEEEEecCC--CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146 177 KFILVGTLDNTLRLWNYST--RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM 254 (262)
Q Consensus 177 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i 254 (262)
++|+.|+++|. ++.++.. ++..+.+ +..+|+++...+..+.|++-+. ....+
T Consensus 14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~------------------------~~~~v~q~~v~~~~~lLi~Lsg-k~~~L 67 (302)
T smart00036 14 KWLLVGTEEGL-YVLNISDQPGTLEKLI------------------------GRRSVTQIWVLEENNVLLMISG-KKPQL 67 (302)
T ss_pred cEEEEEeCCce-EEEEcccCCCCeEEec------------------------CcCceEEEEEEhhhCEEEEEeC-CcceE
Confidence 47888888874 4445543 2233322 5668999999998887777751 23348
Q ss_pred EEEeec
Q 042146 255 KIWTQE 260 (262)
Q Consensus 255 ~iw~~~ 260 (262)
+.+++.
T Consensus 68 ~~~~L~ 73 (302)
T smart00036 68 YSHPLS 73 (302)
T ss_pred EEEEHH
Confidence 888863
No 486
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.08 E-value=32 Score=29.00 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCcc
Q 042146 120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGK 177 (262)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~ 177 (262)
......++|. .|...+.+.........+...++|.+++... ..+..+|+.. ++|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence 3456667774 3555555543322222256667887776554 5555555433 7888
Q ss_pred EEEEEcC-------------CCeEEEEecCCCceeeEEec
Q 042146 178 FILVGTL-------------DNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 178 ~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~ 204 (262)
+|+.+.. ...|...| .+|+.+..+..
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~ 241 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF 241 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence 8887772 12356667 77888777654
No 487
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=80.44 E-value=31 Score=28.36 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCe--EEEEeCCC
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGL--YRILDAST 173 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~--i~~~d~~~ 173 (262)
....|.++.|..|--++++=-.-.-+.+.|+.+.+..+.+..-+-+-.+--.+| .+..|-.|..+|. |.+||+..
T Consensus 426 ~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~vKiSLFdiSd 504 (603)
T COG4880 426 PGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGGVKISLFDISD 504 (603)
T ss_pred CCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcEEEeecccCCceEEEEeccC
Confidence 446788899987766777765556678888876543333221122223334566 4567777777775 56788776
No 488
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.62 E-value=4.8 Score=18.50 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 231 VISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 231 v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
...++.+++|.++++=+ .+..|+++
T Consensus 4 P~gvav~~~g~i~VaD~--~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADS--GNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEEC--CCTEEEEE
T ss_pred CcEEEEeCCCCEEEEEC--CCCEEEEC
Confidence 46788888888888877 67777764
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.45 E-value=36 Score=28.50 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=37.7
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee--eeeee-----cCCCCeeeEEEccCC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC--LKVLP-----AHSDPVTAIDFNRDG 154 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 154 (262)
-..-..|+|.|++++|++--..|.|++++..++.. +..+. ...+....|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34567899999998887765569999998655432 21111 125678899999874
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.12 E-value=44 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=28.2
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIK 130 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 130 (262)
.+.|-.+.+.++++.+++...+|.|.+||..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 5678899999999999999999999999993
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.03 E-value=48 Score=29.77 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..+|...+||.|.+.++....+..|.+++
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 45677777887777777777777777766
No 492
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=78.38 E-value=41 Score=28.58 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCC
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS 54 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 54 (262)
.+-.-++..|.++.++.+..+|.+.++.+..
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 4455688889999999999999999998876
No 493
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.32 E-value=5.4 Score=18.37 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=19.0
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEE
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWD 128 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd 128 (262)
.|.+++.. ..+++++.+.+.+++|.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 46677765 56888888889999873
No 494
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=77.81 E-value=7.2 Score=19.57 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=12.4
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q 042146 154 GTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~ 172 (262)
+..++.++.||.+..+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 4567777777777777754
No 495
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=77.58 E-value=31 Score=26.80 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=38.4
Q ss_pred eEEEEecCCCccceecc------cCCcceEEEEEeCCC-----CEEE-eecCCCeEEEEECCCCeeeee
Q 042146 81 TIRLWDVPTATSLKTLI------GHTNYVFCINFNPQS-----NRIV-SDTFNETIRIWDIKTGKCLKV 137 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~~~~-----~~l~-~~~~dg~i~vwd~~~~~~~~~ 137 (262)
.|.+||+.+.+.++++. ...+.++.+.+.... .+++ +=+..+-|.|+|+.+++.-+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV 103 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE
Confidence 68889999988776543 134678889888732 2333 334446899999998765443
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=76.41 E-value=37 Score=26.97 Aligned_cols=89 Identities=11% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCeeeEEEccCCCEEEEEeCCCe------EEEEeCCC-------------------------------------CCccEE
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGL------YRILDAST-------------------------------------PNGKFI 179 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~------i~~~d~~~-------------------------------------~~~~~l 179 (262)
+.+..+.+.|++..+++.+.+|. +..+++.. +++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Q ss_pred EEEcCC------CeEEEEecCCCceeeEEeccCCc-------eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146 180 LVGTLD------NTLRLWNYSTRKILKTYSGYTNS-------KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 180 ~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 246 (262)
++.=.+ ..|+.++.. |+.+..+.-.... ...- ......+|+++|+|+.|+++
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~--------------~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRR--------------NNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcccccc--------------CCCCeEEEEECCCCCEEEEE
No 497
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.79 E-value=46 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.0
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecC
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS 53 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~ 53 (262)
.-..-+.|+|.||+++|++--..|.|++++..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 34556899999999877776546999888643
No 498
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=74.97 E-value=24 Score=26.79 Aligned_cols=54 Identities=26% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc---cCCCEEEEEeCCCeEEE
Q 042146 115 IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN---RDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~ 168 (262)
++.|.++|.|.|.|.+....+..+.-..-++.-.+.- .-.-.+++++.||.|++
T Consensus 198 LViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 198 LVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred EEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=74.68 E-value=65 Score=29.04 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=23.7
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeec
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL 52 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~ 52 (262)
-...|-+.+||.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3567888889999887777777788887763
No 500
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.32 E-value=17 Score=22.28 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCC
Q 042146 121 NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAS 172 (262)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~ 172 (262)
-+.|..||..+.+ .....-...+.|.++|++++|++++ ..+.|.+|...
T Consensus 35 ~~~Vvyyd~~~~~---~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVK---VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeE---EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3556667754322 2222223457899999988877665 45677777643
Done!