Query 042146
Match_columns 262
No_of_seqs 433 out of 1442
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 05:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 4.5E-44 1.6E-48 276.2 28.7 217 13-261 3-259 (304)
2 1got_B GT-beta; complex (GTP-b 100.0 1.8E-43 6.1E-48 276.9 29.9 229 2-258 74-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 1.1E-42 3.9E-47 270.2 29.2 235 2-260 55-320 (321)
4 1vyh_C Platelet-activating fac 100.0 2.1E-42 7.3E-47 277.3 28.2 227 2-260 127-410 (410)
5 4ery_A WD repeat-containing pr 100.0 2.5E-41 8.5E-46 261.7 31.3 242 11-260 11-311 (312)
6 2pbi_B Guanine nucleotide-bind 100.0 2.3E-41 7.8E-46 266.3 30.0 231 2-258 83-354 (354)
7 3iz6_a 40S ribosomal protein R 100.0 1.4E-41 4.8E-46 270.0 27.7 239 2-261 85-375 (380)
8 3frx_A Guanine nucleotide-bind 100.0 9.8E-41 3.4E-45 259.2 30.1 240 13-261 7-317 (319)
9 1vyh_C Platelet-activating fac 100.0 4.1E-41 1.4E-45 269.8 28.6 214 16-261 101-369 (410)
10 4g56_B MGC81050 protein; prote 100.0 6.7E-41 2.3E-45 263.9 28.3 236 18-261 37-343 (357)
11 3ow8_A WD repeat-containing pr 100.0 5.8E-41 2E-45 260.5 26.3 217 15-261 24-279 (321)
12 4gqb_B Methylosome protein 50; 100.0 3.2E-40 1.1E-44 258.4 27.5 238 20-262 27-332 (344)
13 1got_B GT-beta; complex (GTP-b 100.0 5.7E-39 2E-43 251.4 28.9 218 13-261 45-301 (340)
14 2xzm_R RACK1; ribosome, transl 100.0 2.5E-38 8.6E-43 248.0 31.9 243 12-261 10-340 (343)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.6E-39 1.6E-43 252.4 26.2 235 2-261 35-335 (345)
16 1nr0_A Actin interacting prote 100.0 8.7E-39 3E-43 268.4 29.6 234 4-261 38-355 (611)
17 4aow_A Guanine nucleotide-bind 100.0 1.4E-38 4.9E-43 248.7 27.9 232 12-261 27-337 (340)
18 2hes_X YDR267CP; beta-propelle 100.0 1.2E-38 4.3E-43 248.5 26.0 235 2-261 31-328 (330)
19 2pbi_B Guanine nucleotide-bind 100.0 6.8E-38 2.3E-42 246.5 30.0 227 13-261 54-315 (354)
20 2pm7_B Protein transport prote 100.0 6E-38 2.1E-42 241.2 28.7 217 16-260 2-284 (297)
21 1nr0_A Actin interacting prote 100.0 7.8E-38 2.7E-42 262.7 31.3 244 5-261 129-567 (611)
22 1erj_A Transcriptional repress 100.0 1.6E-37 5.5E-42 247.7 28.9 204 25-261 125-389 (393)
23 2ynn_A Coatomer subunit beta'; 100.0 2.2E-37 7.4E-42 238.8 28.0 227 2-261 32-302 (304)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.2E-38 1.8E-42 246.4 24.8 239 12-260 4-282 (345)
25 2ymu_A WD-40 repeat protein; u 100.0 1E-36 3.5E-41 254.3 32.6 250 2-258 281-577 (577)
26 3iz6_a 40S ribosomal protein R 100.0 1.1E-37 3.9E-42 247.5 23.8 232 12-260 55-328 (380)
27 2hes_X YDR267CP; beta-propelle 100.0 5.2E-37 1.8E-41 239.3 26.2 224 11-260 2-279 (330)
28 3bg1_A Protein SEC13 homolog; 100.0 8.4E-38 2.9E-42 242.4 19.6 214 17-260 7-292 (316)
29 4gga_A P55CDC, cell division c 100.0 7.9E-36 2.7E-40 240.0 28.9 226 3-260 123-394 (420)
30 1gxr_A ESG1, transducin-like e 100.0 3E-35 1E-39 229.4 30.6 225 4-260 71-336 (337)
31 3dm0_A Maltose-binding peripla 100.0 4.8E-36 1.6E-40 255.4 28.0 246 2-261 402-693 (694)
32 3jrp_A Fusion protein of prote 100.0 2.8E-36 9.4E-41 238.8 24.7 228 14-260 2-286 (379)
33 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-36 1.8E-40 234.3 25.4 244 16-261 4-337 (351)
34 4aez_A CDC20, WD repeat-contai 100.0 8.1E-36 2.8E-40 238.5 27.0 227 3-261 111-380 (401)
35 1r5m_A SIR4-interacting protei 100.0 8E-36 2.7E-40 239.5 26.8 233 3-260 128-424 (425)
36 3zwl_B Eukaryotic translation 100.0 2.7E-35 9.2E-40 232.3 29.3 236 2-261 51-346 (369)
37 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-36 5.3E-41 248.9 22.7 258 2-262 180-518 (524)
38 4a11_B DNA excision repair pro 100.0 1.4E-35 4.9E-40 237.0 27.5 231 7-261 27-365 (408)
39 2pm9_A Protein WEB1, protein t 100.0 9.5E-36 3.2E-40 238.8 26.5 235 2-261 42-337 (416)
40 4e54_B DNA damage-binding prot 100.0 2.7E-36 9.2E-41 243.8 23.3 246 12-261 108-430 (435)
41 2ymu_A WD-40 repeat protein; u 100.0 1.2E-34 4.1E-39 241.8 32.9 244 2-261 240-539 (577)
42 4ggc_A P55CDC, cell division c 100.0 3.1E-35 1.1E-39 227.6 27.4 227 3-261 43-315 (318)
43 3gre_A Serine/threonine-protei 100.0 2.6E-36 8.8E-41 243.9 21.5 254 2-258 83-437 (437)
44 4h5i_A Guanine nucleotide-exch 100.0 1.1E-35 3.7E-40 234.8 24.4 214 23-261 14-343 (365)
45 3ei3_B DNA damage-binding prot 100.0 1.2E-35 4.1E-40 236.0 24.5 235 2-261 93-382 (383)
46 1gxr_A ESG1, transducin-like e 100.0 1E-34 3.4E-39 226.4 29.1 217 19-261 47-296 (337)
47 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-34 5.5E-39 223.1 29.6 224 2-261 36-296 (313)
48 1erj_A Transcriptional repress 100.0 4.1E-35 1.4E-39 233.8 26.8 227 21-261 62-341 (393)
49 1sq9_A Antiviral protein SKI8; 100.0 2.9E-35 1E-39 234.7 24.5 250 2-261 33-395 (397)
50 3mkq_A Coatomer beta'-subunit; 100.0 4.7E-35 1.6E-39 253.2 27.5 217 13-261 3-259 (814)
51 3dm0_A Maltose-binding peripla 100.0 5.6E-35 1.9E-39 248.8 27.4 194 14-261 373-592 (694)
52 2pm9_A Protein WEB1, protein t 100.0 6.6E-36 2.2E-40 239.8 20.2 258 3-262 87-415 (416)
53 3k26_A Polycomb protein EED; W 100.0 1.5E-35 5.1E-40 233.6 21.9 234 4-261 43-366 (366)
54 3vl1_A 26S proteasome regulato 100.0 2.7E-35 9.3E-40 236.6 23.8 215 24-261 57-322 (420)
55 3vl1_A 26S proteasome regulato 100.0 6E-35 2.1E-39 234.6 23.4 238 2-262 116-420 (420)
56 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.7E-39 229.3 23.5 257 2-261 27-361 (372)
57 3i2n_A WD repeat-containing pr 100.0 8.6E-34 2.9E-38 222.9 27.6 245 4-261 43-353 (357)
58 2aq5_A Coronin-1A; WD40 repeat 100.0 8.4E-34 2.9E-38 226.9 27.7 210 2-261 54-299 (402)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-33 5.6E-38 228.1 29.7 245 2-262 136-443 (445)
60 3ei3_B DNA damage-binding prot 100.0 3.2E-34 1.1E-38 227.8 24.7 236 11-261 61-339 (383)
61 3gre_A Serine/threonine-protei 100.0 6.1E-35 2.1E-39 235.9 20.6 244 12-261 51-359 (437)
62 3v7d_B Cell division control p 100.0 9.8E-34 3.3E-38 230.5 27.0 223 2-261 139-421 (464)
63 3dwl_C Actin-related protein 2 100.0 1.2E-34 4.2E-39 229.7 19.5 202 2-260 30-280 (377)
64 1p22_A F-BOX/WD-repeat protein 100.0 7.4E-34 2.5E-38 229.5 24.3 220 2-261 150-414 (435)
65 1k8k_C P40, ARP2/3 complex 41 100.0 9.3E-34 3.2E-38 224.0 23.9 213 18-261 3-274 (372)
66 3zwl_B Eukaryotic translation 100.0 3.1E-33 1.1E-37 220.4 26.6 187 15-261 24-249 (369)
67 4gq1_A NUP37; propeller, trans 100.0 8.5E-34 2.9E-38 226.2 22.7 198 2-259 108-387 (393)
68 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-33 9.6E-38 216.1 24.9 214 9-261 4-255 (313)
69 1r5m_A SIR4-interacting protei 100.0 2.4E-33 8.2E-38 225.1 24.9 214 22-261 107-361 (425)
70 3dwl_C Actin-related protein 2 100.0 9E-35 3.1E-39 230.5 16.2 198 18-261 6-236 (377)
71 2xyi_A Probable histone-bindin 100.0 6.5E-33 2.2E-37 223.6 27.1 221 17-261 122-410 (430)
72 3i2n_A WD repeat-containing pr 100.0 9.3E-34 3.2E-38 222.7 21.6 228 15-261 10-291 (357)
73 4ery_A WD repeat-containing pr 100.0 2.3E-32 7.9E-37 211.4 28.9 211 2-222 42-293 (312)
74 3v7d_B Cell division control p 100.0 9.5E-33 3.3E-37 224.7 27.5 230 2-259 180-461 (464)
75 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-34 1.3E-38 234.8 19.0 214 22-260 132-427 (524)
76 3sfz_A APAF-1, apoptotic pepti 100.0 5.9E-33 2E-37 249.8 28.3 232 16-260 608-912 (1249)
77 2w18_A PALB2, fancn, partner a 100.0 8.4E-34 2.9E-38 216.1 19.0 196 25-260 113-356 (356)
78 3dw8_B Serine/threonine-protei 100.0 1.9E-33 6.5E-38 227.5 22.0 230 21-261 26-373 (447)
79 3k26_A Polycomb protein EED; W 100.0 2.5E-33 8.5E-38 220.9 21.4 233 18-261 13-318 (366)
80 3mmy_A MRNA export factor; mRN 100.0 9.7E-33 3.3E-37 217.5 24.6 214 11-261 27-304 (368)
81 1yfq_A Cell cycle arrest prote 100.0 4.4E-33 1.5E-37 217.8 22.2 226 16-261 4-282 (342)
82 3sfz_A APAF-1, apoptotic pepti 100.0 9.2E-33 3.2E-37 248.5 26.7 250 2-261 634-1034(1249)
83 3jro_A Fusion protein of prote 100.0 4.8E-33 1.7E-37 238.5 22.6 189 16-261 2-238 (753)
84 4gqb_B Methylosome protein 50; 100.0 8.4E-33 2.9E-37 216.4 22.0 189 2-198 100-334 (344)
85 3dw8_B Serine/threonine-protei 100.0 4.3E-32 1.5E-36 219.6 26.7 253 3-260 48-445 (447)
86 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-32 7.2E-37 214.4 21.9 210 30-261 43-292 (343)
87 3frx_A Guanine nucleotide-bind 100.0 3E-31 1E-35 205.8 27.1 218 2-229 37-307 (319)
88 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.3E-31 2.2E-35 212.9 28.9 231 14-261 109-391 (445)
89 1sq9_A Antiviral protein SKI8; 100.0 1E-31 3.4E-36 214.2 23.7 234 14-261 7-322 (397)
90 1pgu_A Actin interacting prote 100.0 1.9E-31 6.5E-36 223.8 24.6 255 3-261 86-402 (615)
91 1pgu_A Actin interacting prote 100.0 4.1E-31 1.4E-35 221.8 26.4 234 4-260 38-327 (615)
92 3mkq_A Coatomer beta'-subunit; 100.0 2.3E-31 8E-36 230.1 24.9 226 3-261 33-302 (814)
93 1p22_A F-BOX/WD-repeat protein 100.0 5.3E-31 1.8E-35 212.8 25.0 201 20-260 130-364 (435)
94 3jro_A Fusion protein of prote 100.0 8.2E-32 2.8E-36 230.9 20.9 205 2-260 28-284 (753)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-31 3.5E-36 214.8 20.1 201 2-261 101-342 (402)
96 3vu4_A KMHSV2; beta-propeller 100.0 3E-31 1E-35 208.7 22.5 246 6-261 2-336 (355)
97 2pm7_B Protein transport prote 100.0 6.5E-31 2.2E-35 201.9 23.0 193 2-194 28-284 (297)
98 2oaj_A Protein SNI1; WD40 repe 100.0 8.7E-31 3E-35 227.8 26.2 197 20-261 14-242 (902)
99 4g56_B MGC81050 protein; prote 100.0 3.3E-31 1.1E-35 208.6 21.0 195 2-196 112-344 (357)
100 2xzm_R RACK1; ribosome, transl 100.0 9.7E-30 3.3E-34 199.3 28.7 216 2-229 46-330 (343)
101 3mmy_A MRNA export factor; mRN 100.0 2.2E-30 7.6E-35 204.0 22.0 197 2-258 61-343 (368)
102 1yfq_A Cell cycle arrest prote 100.0 7.1E-30 2.4E-34 199.6 24.4 223 2-253 30-315 (342)
103 4aez_A CDC20, WD repeat-contai 100.0 9.8E-30 3.4E-34 203.3 24.8 214 21-261 89-336 (401)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-29 1E-33 203.4 27.1 217 21-261 100-391 (450)
105 3bg1_A Protein SEC13 homolog; 100.0 3.8E-30 1.3E-34 199.3 20.5 193 2-194 32-292 (316)
106 4e54_B DNA damage-binding prot 100.0 8.9E-30 3E-34 205.6 22.1 226 2-229 139-421 (435)
107 3jrp_A Fusion protein of prote 100.0 3.2E-29 1.1E-33 198.2 23.5 259 3-262 31-379 (379)
108 2j04_A TAU60, YPL007P, hypothe 100.0 1E-29 3.5E-34 205.4 20.1 197 20-261 12-254 (588)
109 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-29 7.6E-34 203.4 21.2 174 21-260 83-296 (588)
110 1l0q_A Surface layer protein; 100.0 6.4E-28 2.2E-32 192.0 28.7 232 2-261 9-275 (391)
111 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-28 4.8E-33 192.7 24.4 194 2-259 92-331 (343)
112 4gq1_A NUP37; propeller, trans 100.0 7.1E-30 2.4E-34 203.6 16.5 203 24-261 90-348 (393)
113 3bws_A Protein LP49; two-domai 100.0 6.4E-28 2.2E-32 194.5 27.2 233 3-261 142-432 (433)
114 2oaj_A Protein SNI1; WD40 repe 100.0 4.6E-29 1.6E-33 217.1 19.9 215 19-261 431-783 (902)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-28 1.1E-32 197.4 22.2 213 23-261 4-271 (450)
116 3bws_A Protein LP49; two-domai 100.0 1.2E-26 4.2E-31 187.0 27.0 228 6-261 102-390 (433)
117 4aow_A Guanine nucleotide-bind 100.0 3E-27 1E-31 184.4 22.4 157 81-261 62-246 (340)
118 4gga_A P55CDC, cell division c 100.0 2.4E-26 8.3E-31 184.8 27.2 210 25-261 107-353 (420)
119 2xyi_A Probable histone-bindin 100.0 3.8E-27 1.3E-31 190.0 21.1 194 2-196 148-411 (430)
120 4ggc_A P55CDC, cell division c 100.0 9E-26 3.1E-30 174.5 26.8 209 26-261 28-273 (318)
121 3f3f_A Nucleoporin SEH1; struc 100.0 2E-26 6.9E-31 179.8 23.3 157 81-261 34-249 (351)
122 4h5i_A Guanine nucleotide-exch 100.0 6.1E-27 2.1E-31 184.8 18.6 170 3-173 155-343 (365)
123 4a11_B DNA excision repair pro 99.9 3.9E-26 1.3E-30 182.3 17.1 157 81-261 24-218 (408)
124 3vu4_A KMHSV2; beta-propeller 99.9 2.8E-25 9.6E-30 174.7 21.1 190 3-196 79-337 (355)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.2E-24 1.4E-28 171.3 25.3 194 5-261 159-387 (415)
126 1l0q_A Surface layer protein; 99.9 1.1E-23 3.9E-28 167.4 25.0 201 36-261 3-233 (391)
127 2w18_A PALB2, fancn, partner a 99.9 1.3E-24 4.6E-29 165.6 18.7 153 4-193 156-355 (356)
128 2oit_A Nucleoporin 214KDA; NH2 99.9 3.1E-23 1.1E-27 167.0 18.6 202 22-261 35-278 (434)
129 1nir_A Nitrite reductase; hemo 99.9 2.1E-22 7.1E-27 166.3 23.5 235 3-261 157-458 (543)
130 1ri6_A Putative isomerase YBHE 99.9 2.4E-22 8.3E-27 156.7 22.5 232 3-260 13-307 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-22 4E-27 162.9 18.8 196 6-261 94-344 (415)
132 2ojh_A Uncharacterized protein 99.9 2.2E-22 7.4E-27 153.6 19.1 199 3-261 20-258 (297)
133 3u4y_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 149.5 22.5 198 3-261 18-252 (331)
134 1nir_A Nitrite reductase; hemo 99.9 9.3E-21 3.2E-25 156.5 22.9 242 3-261 198-514 (543)
135 2ecf_A Dipeptidyl peptidase IV 99.9 5.3E-21 1.8E-25 164.0 21.7 217 23-260 36-366 (741)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-20 1.1E-24 158.9 26.0 236 2-260 34-392 (723)
137 1pby_B Quinohemoprotein amine 99.9 5.6E-21 1.9E-25 148.6 19.3 228 3-261 9-310 (337)
138 3vgz_A Uncharacterized protein 99.9 4.5E-20 1.5E-24 144.5 23.3 220 4-247 68-332 (353)
139 2oit_A Nucleoporin 214KDA; NH2 99.9 2.1E-20 7.3E-25 150.4 21.2 127 22-172 91-222 (434)
140 3vgz_A Uncharacterized protein 99.9 1.8E-19 6.1E-24 141.1 25.5 215 22-261 39-303 (353)
141 3scy_A Hypothetical bacterial 99.9 2.8E-19 9.5E-24 140.7 25.7 215 22-260 48-336 (361)
142 3hfq_A Uncharacterized protein 99.9 3.5E-19 1.2E-23 139.4 24.1 211 4-260 62-316 (347)
143 2ecf_A Dipeptidyl peptidase IV 99.8 1.2E-19 4.1E-24 155.6 21.2 210 25-260 110-412 (741)
144 3u4y_A Uncharacterized protein 99.8 4.3E-19 1.5E-23 137.9 21.8 206 4-261 61-304 (331)
145 2z3z_A Dipeptidyl aminopeptida 99.8 1.9E-19 6.4E-24 153.7 21.3 234 3-261 99-435 (706)
146 1jmx_B Amine dehydrogenase; ox 99.8 3.7E-19 1.3E-23 139.1 20.5 193 3-261 19-325 (349)
147 2ojh_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 137.5 18.1 190 4-248 61-291 (297)
148 2z3z_A Dipeptidyl aminopeptida 99.8 9.6E-19 3.3E-23 149.3 24.2 211 24-259 82-387 (706)
149 3o4h_A Acylamino-acid-releasin 99.8 7.9E-20 2.7E-24 152.7 17.1 207 22-259 20-274 (582)
150 1k32_A Tricorn protease; prote 99.8 3.2E-19 1.1E-23 158.3 21.0 221 14-261 194-461 (1045)
151 1xfd_A DIP, dipeptidyl aminope 99.8 7.7E-20 2.6E-24 156.4 14.8 138 25-164 18-194 (723)
152 1k32_A Tricorn protease; prote 99.8 1.4E-18 4.7E-23 154.2 22.0 226 4-259 223-500 (1045)
153 3hfq_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 133.7 21.2 188 20-260 36-270 (347)
154 1q7f_A NHL, brain tumor CG1071 99.8 2.2E-16 7.4E-21 120.2 26.4 216 20-261 26-280 (286)
155 1ri6_A Putative isomerase YBHE 99.8 1.8E-17 6E-22 129.1 19.4 141 99-260 36-208 (343)
156 3o4h_A Acylamino-acid-releasin 99.8 1.2E-17 4E-22 139.6 19.2 220 4-259 43-313 (582)
157 3fvz_A Peptidyl-glycine alpha- 99.8 2.1E-15 7E-20 117.2 30.1 227 22-261 22-322 (329)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.6E-17 2.3E-21 127.4 21.5 219 22-261 38-341 (365)
159 1z68_A Fibroblast activation p 99.8 2.1E-17 7E-22 141.4 19.9 233 3-260 34-390 (719)
160 1pby_B Quinohemoprotein amine 99.8 3.5E-17 1.2E-21 127.1 18.2 198 36-261 2-269 (337)
161 3pe7_A Oligogalacturonate lyas 99.8 3.5E-17 1.2E-21 129.8 17.3 239 7-260 62-381 (388)
162 1jmx_B Amine dehydrogenase; ox 99.7 3E-16 1E-20 122.5 19.8 140 28-205 4-185 (349)
163 3pe7_A Oligogalacturonate lyas 99.7 3.9E-16 1.3E-20 123.8 20.0 194 12-261 19-273 (388)
164 1z68_A Fibroblast activation p 99.7 2.5E-17 8.6E-22 140.9 12.9 177 28-258 20-284 (719)
165 3azo_A Aminopeptidase; POP fam 99.7 1.4E-15 4.9E-20 128.8 21.5 173 5-204 102-333 (662)
166 4a5s_A Dipeptidyl peptidase 4 99.7 4E-16 1.4E-20 133.9 18.1 111 24-173 17-141 (740)
167 2oiz_A Aromatic amine dehydrog 99.7 2.5E-15 8.4E-20 118.2 21.0 226 4-261 30-334 (361)
168 2dg1_A DRP35, lactonase; beta 99.7 4.3E-14 1.5E-18 109.8 26.1 205 3-260 25-262 (333)
169 3azo_A Aminopeptidase; POP fam 99.7 2.6E-15 9E-20 127.2 18.7 227 16-260 16-322 (662)
170 3c5m_A Oligogalacturonate lyas 99.7 2.4E-15 8.3E-20 119.4 17.4 209 27-260 84-381 (396)
171 3scy_A Hypothetical bacterial 99.7 2.2E-13 7.5E-18 107.0 27.1 184 16-201 92-345 (361)
172 3no2_A Uncharacterized protein 99.7 3.8E-14 1.3E-18 107.2 20.9 163 34-260 4-194 (276)
173 1rwi_B Serine/threonine-protei 99.7 8E-14 2.7E-18 105.0 22.6 178 23-261 66-264 (270)
174 2gop_A Trilobed protease; beta 99.7 1.6E-14 5.3E-19 112.9 18.6 102 24-163 59-190 (347)
175 4a5s_A Dipeptidyl peptidase 4 99.6 1.2E-15 4.2E-20 130.9 12.9 140 4-171 35-200 (740)
176 3no2_A Uncharacterized protein 99.6 2.6E-13 9E-18 102.5 23.2 164 2-204 12-204 (276)
177 2bkl_A Prolyl endopeptidase; m 99.6 3.3E-14 1.1E-18 121.2 19.9 180 21-260 118-348 (695)
178 3c5m_A Oligogalacturonate lyas 99.6 1.5E-15 5E-20 120.7 8.9 196 12-261 19-273 (396)
179 3e5z_A Putative gluconolactona 99.6 6.5E-13 2.2E-17 101.5 22.6 184 4-252 49-278 (296)
180 2dg1_A DRP35, lactonase; beta 99.6 5.4E-14 1.8E-18 109.2 16.7 175 24-260 6-212 (333)
181 3e5z_A Putative gluconolactona 99.6 5.7E-13 2E-17 101.8 21.6 184 14-260 18-245 (296)
182 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.4E-18 116.8 19.9 181 21-257 122-362 (710)
183 1rwi_B Serine/threonine-protei 99.6 1.7E-12 5.7E-17 97.7 21.6 177 25-261 25-222 (270)
184 1jof_A Carboxy-CIS,CIS-muconat 99.5 7.7E-13 2.6E-17 104.2 18.8 138 101-260 40-223 (365)
185 1xip_A Nucleoporin NUP159; bet 99.5 6E-13 2E-17 104.4 17.2 176 25-247 39-232 (388)
186 3dsm_A Uncharacterized protein 99.5 3.2E-11 1.1E-15 93.5 25.3 195 3-261 15-253 (328)
187 1qks_A Cytochrome CD1 nitrite 99.5 6E-11 2E-15 98.2 27.8 204 3-261 175-421 (567)
188 3dsm_A Uncharacterized protein 99.5 7.2E-12 2.5E-16 97.2 20.7 195 4-260 63-301 (328)
189 2xdw_A Prolyl endopeptidase; a 99.5 5.6E-12 1.9E-16 107.8 21.7 194 26-261 173-414 (710)
190 2z2n_A Virginiamycin B lyase; 99.5 1.4E-10 4.8E-15 88.3 27.3 214 19-259 10-253 (299)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.5E-11 5.2E-16 94.5 21.1 214 21-260 15-298 (314)
192 1q7f_A NHL, brain tumor CG1071 99.5 2.8E-11 9.7E-16 91.8 20.6 155 81-260 52-237 (286)
193 3fvz_A Peptidyl-glycine alpha- 99.5 4.8E-11 1.7E-15 92.5 22.0 173 5-203 69-285 (329)
194 2gop_A Trilobed protease; beta 99.5 1.6E-11 5.6E-16 95.7 19.5 185 26-259 106-329 (347)
195 1xip_A Nucleoporin NUP159; bet 99.4 2.4E-12 8E-17 101.1 13.5 124 102-261 39-191 (388)
196 2z2n_A Virginiamycin B lyase; 99.4 1.4E-09 4.7E-14 82.7 28.8 212 22-261 55-295 (299)
197 2mad_H Methylamine dehydrogena 99.4 2.2E-10 7.4E-15 90.3 24.7 94 6-137 48-162 (373)
198 3g4e_A Regucalcin; six bladed 99.4 1.1E-10 3.8E-15 89.2 22.3 168 22-247 52-260 (297)
199 3hrp_A Uncharacterized protein 99.4 3E-10 1E-14 90.7 25.3 227 24-260 131-409 (409)
200 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.4E-16 106.0 18.4 182 22-260 161-392 (741)
201 2bkl_A Prolyl endopeptidase; m 99.4 9.5E-12 3.3E-16 106.1 16.8 190 27-261 171-397 (695)
202 1qks_A Cytochrome CD1 nitrite 99.4 1.7E-10 5.8E-15 95.6 22.9 154 84-261 181-373 (567)
203 2qc5_A Streptogramin B lactona 99.4 2.6E-09 8.8E-14 81.3 27.5 213 21-260 17-259 (300)
204 3dr2_A Exported gluconolactona 99.4 2.2E-10 7.4E-15 87.9 21.5 183 4-247 66-295 (305)
205 3sjl_D Methylamine dehydrogena 99.4 1.2E-10 4.2E-15 91.1 19.9 219 4-261 58-363 (386)
206 2oiz_A Aromatic amine dehydrog 99.3 4.9E-11 1.7E-15 93.7 14.7 117 81-199 32-187 (361)
207 3c75_H MADH, methylamine dehyd 99.3 2.6E-10 9E-15 90.7 18.9 98 5-139 99-217 (426)
208 3iuj_A Prolyl endopeptidase; h 99.3 2.4E-10 8.1E-15 97.4 18.7 120 21-173 126-268 (693)
209 2hz6_A Endoplasmic reticulum t 99.3 9.1E-13 3.1E-17 103.8 2.5 132 34-203 8-157 (369)
210 2qc5_A Streptogramin B lactona 99.3 3.8E-08 1.3E-12 74.7 27.4 211 22-260 60-299 (300)
211 3g4e_A Regucalcin; six bladed 99.3 1.4E-08 4.8E-13 77.5 24.6 182 19-260 8-228 (297)
212 2qe8_A Uncharacterized protein 99.2 2.8E-09 9.5E-14 83.1 20.5 177 21-247 64-309 (343)
213 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.5E-13 78.7 23.7 121 101-247 134-290 (326)
214 1yr2_A Prolyl oligopeptidase; 99.2 7.7E-10 2.6E-14 95.0 17.3 191 27-261 212-441 (741)
215 2iwa_A Glutamine cyclotransfer 99.2 4.5E-08 1.5E-12 72.7 24.1 200 12-260 8-236 (266)
216 2hz6_A Endoplasmic reticulum t 99.2 2.1E-11 7.1E-16 96.1 5.4 159 3-203 17-200 (369)
217 3sjl_D Methylamine dehydrogena 99.2 4.8E-09 1.6E-13 82.1 18.2 116 82-199 61-213 (386)
218 1mda_H Methylamine dehydrogena 99.1 1.5E-09 5.3E-14 84.8 14.6 47 6-54 47-105 (368)
219 2ghs_A AGR_C_1268P; regucalcin 99.1 7.4E-08 2.5E-12 74.5 23.9 175 25-260 50-259 (326)
220 3nol_A Glutamine cyclotransfer 99.1 5.1E-08 1.8E-12 71.7 20.2 185 12-247 30-243 (262)
221 3nok_A Glutaminyl cyclase; bet 99.0 2.7E-07 9.3E-12 67.9 22.0 182 14-247 44-253 (268)
222 3hxj_A Pyrrolo-quinoline quino 99.0 6.1E-08 2.1E-12 74.8 19.0 195 34-261 107-324 (330)
223 3dr2_A Exported gluconolactona 99.0 1.3E-07 4.4E-12 72.4 20.3 79 92-172 36-115 (305)
224 2mad_H Methylamine dehydrogena 99.0 1.3E-07 4.5E-12 74.4 20.3 115 82-200 49-200 (373)
225 3mbr_X Glutamine cyclotransfer 99.0 1.2E-06 4.1E-11 63.9 23.4 186 12-247 8-222 (243)
226 2qe8_A Uncharacterized protein 99.0 1.5E-07 5E-12 73.4 20.1 105 24-157 17-134 (343)
227 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 4.2E-07 1.4E-11 69.5 21.4 170 22-195 69-299 (314)
228 3iuj_A Prolyl endopeptidase; h 98.9 5.9E-08 2E-12 82.7 17.4 92 81-173 209-314 (693)
229 3c75_H MADH, methylamine dehyd 98.9 4.1E-08 1.4E-12 78.2 14.7 158 80-259 99-293 (426)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.9 5.3E-07 1.8E-11 71.0 21.1 168 34-203 102-304 (376)
231 3hrp_A Uncharacterized protein 98.9 1.8E-07 6.3E-12 74.6 18.3 138 101-260 131-297 (409)
232 2ece_A 462AA long hypothetical 98.9 5.6E-07 1.9E-11 71.4 18.8 149 102-260 139-351 (462)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.8 8.3E-07 2.8E-11 69.9 19.6 194 35-258 143-375 (376)
234 1kb0_A Quinohemoprotein alcoho 98.8 6.5E-07 2.2E-11 76.0 19.9 162 27-204 246-516 (677)
235 1yiq_A Quinohemoprotein alcoho 98.8 9.1E-07 3.1E-11 75.3 20.8 139 35-173 121-338 (689)
236 2ece_A 462AA long hypothetical 98.8 2.7E-06 9.2E-11 67.5 21.8 159 81-247 165-399 (462)
237 1fwx_A Nitrous oxide reductase 98.8 1.4E-07 4.9E-12 77.2 14.7 150 82-261 114-308 (595)
238 3hxj_A Pyrrolo-quinoline quino 98.8 3.5E-07 1.2E-11 70.5 16.3 173 22-204 58-252 (330)
239 1kb0_A Quinohemoprotein alcoho 98.8 4.7E-07 1.6E-11 76.9 18.2 140 34-173 127-346 (677)
240 1yiq_A Quinohemoprotein alcoho 98.8 8.9E-07 3E-11 75.4 19.6 161 28-204 239-514 (689)
241 1fwx_A Nitrous oxide reductase 98.7 1E-06 3.5E-11 72.3 16.9 200 12-247 121-406 (595)
242 1mda_H Methylamine dehydrogena 98.7 1.6E-07 5.6E-12 73.5 10.6 113 81-195 47-194 (368)
243 3qqz_A Putative uncharacterize 98.7 4.4E-05 1.5E-09 56.4 23.9 189 17-258 20-250 (255)
244 1npe_A Nidogen, entactin; glyc 98.6 9.3E-05 3.2E-09 55.2 25.2 115 24-173 36-155 (267)
245 1npe_A Nidogen, entactin; glyc 98.5 8.3E-05 2.8E-09 55.5 21.4 73 101-173 36-110 (267)
246 2iwa_A Glutamine cyclotransfer 98.5 3.7E-05 1.3E-09 57.1 18.1 137 102-260 22-180 (266)
247 2fp8_A Strictosidine synthase; 98.5 9.8E-05 3.3E-09 56.7 21.3 71 102-173 127-216 (322)
248 3nok_A Glutaminyl cyclase; bet 98.5 2.2E-05 7.7E-10 57.8 16.4 100 102-204 56-173 (268)
249 3nol_A Glutamine cyclotransfer 98.5 2.6E-05 9.1E-10 57.4 16.6 101 102-204 44-164 (262)
250 1kv9_A Type II quinohemoprotei 98.4 2.2E-05 7.6E-10 66.6 18.0 139 35-173 117-333 (668)
251 2fp8_A Strictosidine synthase; 98.4 0.00011 3.6E-09 56.5 20.3 145 24-195 19-216 (322)
252 3tc9_A Hypothetical hydrolase; 98.4 0.00025 8.7E-09 56.8 22.5 70 103-172 228-300 (430)
253 2xe4_A Oligopeptidase B; hydro 98.4 4.1E-05 1.4E-09 65.9 18.4 71 104-174 224-305 (751)
254 2p4o_A Hypothetical protein; p 98.4 0.00041 1.4E-08 52.9 24.4 123 12-172 21-146 (306)
255 3mbr_X Glutamine cyclotransfer 98.3 0.00017 5.8E-09 52.6 18.1 102 101-204 21-142 (243)
256 4hw6_A Hypothetical protein, I 98.3 0.00037 1.3E-08 55.9 21.9 70 103-172 230-303 (433)
257 1kv9_A Type II quinohemoprotei 98.3 0.00021 7.1E-09 60.7 21.0 162 28-205 234-498 (668)
258 2p4o_A Hypothetical protein; p 98.3 0.00052 1.8E-08 52.3 23.5 121 104-247 120-276 (306)
259 2ad6_A Methanol dehydrogenase 98.2 0.00017 5.9E-09 60.0 18.6 123 81-204 273-503 (571)
260 3v65_B Low-density lipoprotein 98.2 0.0013 4.4E-08 52.0 23.9 72 102-173 160-234 (386)
261 3tc9_A Hypothetical hydrolase; 98.2 0.00023 7.9E-09 57.1 17.5 136 102-260 138-300 (430)
262 1flg_A Protein (quinoprotein e 98.2 0.00018 6.2E-09 60.0 16.9 124 80-204 291-525 (582)
263 1w6s_A Methanol dehydrogenase 98.1 0.00098 3.3E-08 55.7 21.1 123 81-204 279-512 (599)
264 3v64_C Agrin; beta propeller, 98.1 0.0015 5.1E-08 50.8 22.5 73 101-173 73-147 (349)
265 1k3i_A Galactose oxidase precu 98.1 0.00039 1.3E-08 59.0 18.6 93 81-173 220-323 (656)
266 3v64_C Agrin; beta propeller, 98.1 0.0017 5.9E-08 50.5 25.6 73 101-173 116-191 (349)
267 3v65_B Low-density lipoprotein 98.1 0.0021 7.3E-08 50.7 22.0 91 82-173 98-190 (386)
268 2xe4_A Oligopeptidase B; hydro 98.0 0.00012 4.2E-09 63.0 14.1 69 102-173 175-256 (751)
269 4a2l_A BT_4663, two-component 98.0 0.0064 2.2E-07 52.8 24.3 142 100-260 262-435 (795)
270 4a2l_A BT_4663, two-component 98.0 0.0064 2.2E-07 52.8 25.9 147 23-172 309-479 (795)
271 2ad6_A Methanol dehydrogenase 98.0 0.0013 4.4E-08 54.8 18.9 138 35-173 115-335 (571)
272 2p9w_A MAL S 1 allergenic prot 98.0 0.0018 6.3E-08 49.4 17.8 152 101-260 13-214 (334)
273 1ijq_A LDL receptor, low-densi 98.0 0.0033 1.1E-07 48.1 21.8 91 82-173 12-108 (316)
274 1w6s_A Methanol dehydrogenase 97.9 0.0018 6.1E-08 54.2 19.1 93 80-173 182-342 (599)
275 4hw6_A Hypothetical protein, I 97.9 0.0024 8.3E-08 51.2 18.1 136 102-260 140-303 (433)
276 3amr_A 3-phytase; beta-propell 97.8 0.0056 1.9E-07 47.2 19.4 154 82-260 52-262 (355)
277 3m0c_C LDL receptor, low-densi 97.8 0.013 4.4E-07 50.7 25.3 151 23-173 423-589 (791)
278 1ijq_A LDL receptor, low-densi 97.8 0.0059 2E-07 46.7 26.7 120 23-173 29-152 (316)
279 3qqz_A Putative uncharacterize 97.8 0.0045 1.6E-07 45.7 17.3 77 95-172 21-99 (255)
280 3v9f_A Two-component system se 97.8 0.013 4.6E-07 50.7 23.4 146 23-172 362-523 (781)
281 3pbp_A Nucleoporin NUP82; beta 97.8 0.0051 1.8E-07 48.5 18.1 71 102-173 67-158 (452)
282 1k3i_A Galactose oxidase precu 97.8 0.001 3.5E-08 56.4 15.2 30 105-134 291-326 (656)
283 3p5b_L Low density lipoprotein 97.8 0.0092 3.2E-07 47.3 21.8 92 81-173 93-190 (400)
284 3sov_A LRP-6, low-density lipo 97.8 0.0074 2.5E-07 46.2 19.6 73 101-173 35-110 (318)
285 1n7d_A LDL receptor, low-densi 97.8 0.0017 5.9E-08 55.4 16.2 70 103-172 455-527 (699)
286 3p5b_L Low density lipoprotein 97.7 0.011 3.6E-07 47.0 26.9 73 101-173 159-234 (400)
287 1flg_A Protein (quinoprotein e 97.7 0.0045 1.5E-07 51.7 17.7 68 105-173 250-355 (582)
288 2xzh_A Clathrin heavy chain 1; 97.7 0.011 3.6E-07 45.1 22.1 129 42-173 46-189 (365)
289 3sov_A LRP-6, low-density lipo 97.6 0.012 4.2E-07 45.0 23.3 72 102-173 80-154 (318)
290 3kya_A Putative phosphatase; s 97.6 0.019 6.4E-07 46.7 21.3 69 103-171 249-339 (496)
291 3kya_A Putative phosphatase; s 97.6 0.016 5.5E-07 47.1 18.8 63 102-164 140-214 (496)
292 3v9f_A Two-component system se 97.6 0.032 1.1E-06 48.3 24.1 147 23-173 312-478 (781)
293 3amr_A 3-phytase; beta-propell 97.4 0.016 5.3E-07 44.7 15.5 120 111-260 39-207 (355)
294 1bpo_A Protein (clathrin); cla 97.4 0.034 1.2E-06 44.2 22.8 129 42-173 45-188 (494)
295 2p9w_A MAL S 1 allergenic prot 97.2 0.042 1.4E-06 42.0 21.1 94 102-195 64-215 (334)
296 1n7d_A LDL receptor, low-densi 97.2 0.0063 2.1E-07 52.0 12.5 104 101-204 496-623 (699)
297 3pbp_A Nucleoporin NUP82; beta 97.2 0.017 5.8E-07 45.7 13.6 127 25-170 67-209 (452)
298 2vpj_A Kelch-like protein 12; 97.1 0.033 1.1E-06 42.0 15.1 113 81-197 79-233 (301)
299 3s94_A LRP-6, low-density lipo 97.0 0.11 3.9E-06 43.6 21.8 73 101-173 84-159 (619)
300 2xn4_A Kelch-like protein 2; s 97.0 0.031 1.1E-06 42.2 13.7 85 111-197 108-231 (302)
301 2xbg_A YCF48-like protein; pho 96.9 0.089 3E-06 40.3 21.7 68 99-169 161-230 (327)
302 3sre_A PON1, serum paraoxonase 96.9 0.096 3.3E-06 40.7 17.6 33 227-260 219-251 (355)
303 3ii7_A Kelch-like protein 7; p 96.9 0.068 2.3E-06 40.4 14.8 61 111-173 55-127 (306)
304 2vpj_A Kelch-like protein 12; 96.8 0.079 2.7E-06 39.9 14.6 85 111-197 62-186 (301)
305 3s94_A LRP-6, low-density lipo 96.8 0.2 7E-06 42.1 21.1 148 100-260 39-201 (619)
306 3ii7_A Kelch-like protein 7; p 96.6 0.083 2.8E-06 39.9 13.6 113 81-197 71-227 (306)
307 1tl2_A L10, protein (tachylect 96.6 0.097 3.3E-06 37.5 12.6 62 103-168 90-158 (236)
308 3sre_A PON1, serum paraoxonase 96.6 0.17 5.9E-06 39.2 19.6 69 101-172 165-251 (355)
309 1xi4_A Clathrin heavy chain; a 96.5 0.28 9.4E-06 45.2 17.5 128 43-173 46-188 (1630)
310 4asc_A Kelch repeat and BTB do 96.5 0.1 3.4E-06 39.7 13.5 85 111-197 98-223 (315)
311 1zgk_A Kelch-like ECH-associat 96.4 0.11 3.8E-06 39.3 13.3 113 81-197 91-242 (308)
312 2xn4_A Kelch-like protein 2; s 96.4 0.18 6.3E-06 37.9 14.4 61 111-173 61-133 (302)
313 4a0p_A LRP6, LRP-6, low-densit 96.4 0.35 1.2E-05 40.8 25.0 115 24-173 37-155 (628)
314 4a0p_A LRP6, LRP-6, low-densit 96.4 0.37 1.3E-05 40.6 24.1 147 101-260 37-196 (628)
315 2be1_A Serine/threonine-protei 96.3 0.018 6.2E-07 44.3 8.2 93 113-205 11-140 (339)
316 1tl2_A L10, protein (tachylect 96.2 0.15 5.1E-06 36.6 11.6 67 102-172 42-115 (236)
317 2be1_A Serine/threonine-protei 96.2 0.31 1.1E-05 37.5 15.5 89 111-200 110-236 (339)
318 1zgk_A Kelch-like ECH-associat 96.1 0.16 5.4E-06 38.4 12.6 61 111-173 70-146 (308)
319 2xbg_A YCF48-like protein; pho 95.8 0.45 1.5E-05 36.4 22.1 68 101-170 122-190 (327)
320 2woz_A Kelch repeat and BTB do 95.8 0.25 8.5E-06 37.5 12.3 61 111-173 109-184 (318)
321 1cru_A Protein (soluble quinop 95.6 0.71 2.4E-05 37.2 17.6 61 101-161 27-98 (454)
322 2g8s_A Glucose/sorbosone dehyd 95.6 0.56 1.9E-05 36.3 13.7 58 101-160 18-86 (353)
323 3a9g_A Putative uncharacterize 95.5 0.66 2.2E-05 36.0 15.2 70 101-172 29-113 (354)
324 2uvk_A YJHT; unknown function, 95.3 0.71 2.4E-05 35.6 13.6 49 122-171 168-224 (357)
325 4asc_A Kelch repeat and BTB do 95.1 0.76 2.6E-05 34.7 14.2 86 109-196 43-175 (315)
326 3m0c_C LDL receptor, low-densi 95.0 1.6 5.5E-05 37.9 29.2 74 100-173 470-546 (791)
327 2ism_A Putative oxidoreductase 94.7 1.1 3.8E-05 34.7 20.7 104 24-160 31-152 (352)
328 3ei3_A DNA damage-binding prot 94.7 2.4 8.4E-05 38.6 18.8 90 80-173 807-913 (1158)
329 3sbq_A Nitrous-oxide reductase 94.6 0.14 4.8E-06 42.1 7.8 71 102-173 324-408 (638)
330 2ism_A Putative oxidoreductase 94.5 1.3 4.4E-05 34.3 16.5 57 101-160 31-95 (352)
331 3das_A Putative oxidoreductase 94.3 1.4 4.8E-05 34.1 16.3 72 100-171 31-114 (347)
332 1cru_A Protein (soluble quinop 94.1 1.9 6.6E-05 34.7 14.1 29 24-52 27-55 (454)
333 2woz_A Kelch repeat and BTB do 93.8 1.6 5.6E-05 32.9 15.6 63 109-173 54-136 (318)
334 2xzh_A Clathrin heavy chain 1; 93.6 1.9 6.4E-05 33.1 18.1 152 14-168 138-327 (365)
335 3a9g_A Putative uncharacterize 93.5 2.1 7E-05 33.2 21.4 106 23-161 28-153 (354)
336 2g8s_A Glucose/sorbosone dehyd 92.8 2.6 9E-05 32.5 16.4 29 24-52 18-46 (353)
337 2uvk_A YJHT; unknown function, 92.2 3.1 0.00011 31.9 15.3 51 111-163 65-128 (357)
338 3no0_A DNA gyrase subunit A; D 91.9 3 0.0001 31.0 20.1 72 100-173 67-146 (276)
339 3sbq_A Nitrous-oxide reductase 91.6 2.2 7.4E-05 35.4 10.2 52 144-195 324-408 (638)
340 2wg3_C Hedgehog-interacting pr 91.4 3.3 0.00011 33.5 11.3 53 101-153 14-79 (463)
341 4gq2_M Nucleoporin NUP120; bet 91.3 2.7 9.2E-05 37.4 11.5 30 174-203 245-274 (950)
342 3das_A Putative oxidoreductase 91.2 4.2 0.00014 31.4 14.4 112 21-161 29-158 (347)
343 2zwa_A Leucine carboxyl methyl 91.0 6.8 0.00023 33.5 13.8 87 110-197 396-524 (695)
344 3ei3_A DNA damage-binding prot 90.9 9.4 0.00032 34.9 25.8 115 81-199 493-642 (1158)
345 1bpo_A Protein (clathrin); cla 90.6 5.7 0.0002 31.9 19.2 155 14-171 137-329 (494)
346 4gq2_M Nucleoporin NUP120; bet 90.5 9.2 0.00031 34.1 15.1 31 229-261 236-266 (950)
347 2zwa_A Leucine carboxyl methyl 90.0 8.5 0.00029 32.9 19.8 67 106-173 445-522 (695)
348 1xi4_A Clathrin heavy chain; a 86.2 22 0.00077 33.4 13.6 153 14-169 137-327 (1630)
349 2wg3_C Hedgehog-interacting pr 85.5 13 0.00045 30.0 14.6 29 24-52 14-43 (463)
350 3zwu_A Alkaline phosphatase PH 85.2 4.7 0.00016 33.7 8.5 59 103-161 478-549 (592)
351 4fhn_B Nucleoporin NUP120; pro 82.0 4.5 0.00016 36.8 7.8 30 174-203 247-276 (1139)
352 3s25_A Hypothetical 7-bladed b 80.8 16 0.00054 27.5 13.2 87 106-197 58-178 (302)
353 4a9v_A PHOX; hydrolase, beta-p 79.8 15 0.00052 30.6 9.3 61 101-161 476-549 (592)
354 3ott_A Two-component system se 79.4 30 0.001 29.8 24.3 142 23-171 21-172 (758)
355 4fhn_B Nucleoporin NUP120; pro 78.6 3.5 0.00012 37.6 5.9 30 230-261 239-268 (1139)
356 1zi0_A DNA gyrase subunit A; b 74.5 25 0.00086 26.5 21.2 72 101-173 95-176 (307)
357 3mez_B Mannose-specific lectin 74.2 13 0.00045 23.1 10.2 79 112-192 24-105 (113)
358 3f7f_A Nucleoporin NUP120; nuc 73.1 6.9 0.00024 33.5 5.8 37 102-140 223-259 (729)
359 3f7f_A Nucleoporin NUP120; nuc 71.5 13 0.00044 31.9 7.0 30 175-204 230-259 (729)
360 3s25_A Hypothetical 7-bladed b 68.8 34 0.0012 25.6 16.4 83 81-173 89-176 (302)
361 3zwu_A Alkaline phosphatase PH 67.7 15 0.00052 30.7 6.7 20 227-246 529-548 (592)
362 3l6v_A GYRA, DNA gyrase subuni 67.2 43 0.0015 26.1 18.9 72 101-173 99-180 (370)
363 3mez_A Mannose-specific lectin 62.0 25 0.00087 21.7 7.4 46 146-192 52-101 (111)
364 4h3o_A Lectin; cadmium, plant 61.3 25 0.00086 21.5 10.1 45 146-192 53-99 (105)
365 1q47_A Semaphorin 3A; beta pro 59.1 72 0.0025 26.0 9.5 67 102-168 405-487 (495)
366 1suu_A DNA gyrase subunit A; t 54.9 66 0.0023 24.3 21.2 113 32-172 5-132 (312)
367 3al9_A Plexin-A2; beta-propell 53.4 47 0.0016 27.5 7.1 67 102-168 401-476 (539)
368 1q47_A Semaphorin 3A; beta pro 52.0 55 0.0019 26.7 7.2 28 227-256 460-487 (495)
369 3q6k_A 43.2 kDa salivary prote 51.6 85 0.0029 24.6 20.0 84 81-164 124-245 (381)
370 3uc1_A DNA gyrase subunit A; D 51.4 78 0.0027 24.1 18.7 119 24-172 95-227 (327)
371 4gz8_A Semaphorin-3A; multi-do 50.9 67 0.0023 27.4 7.8 28 227-256 468-495 (667)
372 3no0_A DNA gyrase subunit A; D 50.5 73 0.0025 23.5 15.6 69 101-171 24-97 (276)
373 3qhy_B Beta-lactamase inhibito 47.6 82 0.0028 23.2 18.5 160 24-195 24-207 (282)
374 3l6v_A GYRA, DNA gyrase subuni 46.6 1E+02 0.0035 24.0 15.7 19 176-194 113-131 (370)
375 1zi0_A DNA gyrase subunit A; b 45.7 94 0.0032 23.3 15.2 20 175-194 108-127 (307)
376 1zvt_A Topoisomerase IV subuni 45.2 87 0.003 22.8 13.1 20 175-194 94-113 (256)
377 3qhy_B Beta-lactamase inhibito 42.9 98 0.0034 22.8 13.7 89 79-173 41-129 (282)
378 3ott_A Two-component system se 40.7 1.7E+02 0.006 25.0 26.4 168 24-198 63-263 (758)
379 1b2p_A Protein (lectin); manno 40.6 66 0.0022 20.1 10.6 45 146-192 63-109 (119)
380 4gz8_A Semaphorin-3A; multi-do 39.5 1.8E+02 0.0062 24.9 8.7 67 102-168 413-495 (667)
381 3a0c_A Mannose/sialic acid-bin 39.1 66 0.0022 19.7 10.4 45 146-192 53-99 (110)
382 3al9_A Plexin-A2; beta-propell 39.0 60 0.002 26.8 5.7 27 228-256 449-476 (539)
383 3oky_B Putative uncharacterize 38.8 1.7E+02 0.0058 24.4 9.0 68 102-169 404-496 (565)
384 3nvq_A Semaphorin-7A; beta-pro 38.2 1.4E+02 0.0049 25.0 7.7 68 102-169 363-445 (590)
385 1olz_A Semaphorin 4D; developm 36.7 1.9E+02 0.0064 24.7 8.4 67 102-168 398-477 (663)
386 3nvq_A Semaphorin-7A; beta-pro 36.2 1.4E+02 0.0048 25.0 7.4 28 227-256 417-444 (590)
387 3dzw_A Agglutinin; lectin, man 35.8 75 0.0026 19.4 10.5 45 146-192 52-98 (109)
388 3ol2_B Plexin-B1; beta-propell 33.2 1.4E+02 0.0049 24.6 6.9 68 102-169 388-462 (528)
389 4a9v_A PHOX; hydrolase, beta-p 32.4 1.2E+02 0.0042 25.3 6.4 19 229-247 531-549 (592)
390 3b7f_A Glycosyl hydrolase, BNR 31.4 1.8E+02 0.0061 22.4 11.8 27 101-127 115-143 (394)
391 3q6k_A 43.2 kDa salivary prote 31.2 1.9E+02 0.0065 22.6 13.8 104 123-247 124-242 (381)
392 1olz_A Semaphorin 4D; developm 30.9 2.2E+02 0.0076 24.3 7.9 28 227-256 448-477 (663)
393 3r0e_B Lectin; carbohydrate bi 26.0 1.2E+02 0.004 18.6 8.8 45 146-192 56-102 (110)
394 1b2p_A Protein (lectin); manno 25.1 1.3E+02 0.0044 18.7 7.7 45 146-193 32-78 (119)
395 3uc1_A DNA gyrase subunit A; D 24.7 2.3E+02 0.0079 21.5 22.4 71 101-172 95-175 (327)
396 3oky_A Plexin-A2; transmembran 22.8 3.2E+02 0.011 23.4 7.4 67 103-169 401-476 (681)
397 3oky_A Plexin-A2; transmembran 22.6 2.3E+02 0.0078 24.3 6.5 27 228-256 448-475 (681)
398 1sqj_A OXG-RCBH, oligoxylogluc 21.5 4E+02 0.014 23.2 9.9 113 23-168 14-147 (789)
399 3ol2_B Plexin-B1; beta-propell 20.9 1.6E+02 0.0055 24.3 5.2 28 227-256 433-461 (528)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-44 Score=276.16 Aligned_cols=217 Identities=19% Similarity=0.390 Sum_probs=190.4
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---------------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--------------- 77 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--------------- 77 (262)
+++.+++++|.++|++++|+|++++|++++.||+|++||+++... ...+..+...+.
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--------VRSIQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--------eEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence 456788999999999999999999999999999999999875422 122222222222
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGT 155 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~ 155 (262)
..+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 2238999999999999999999999999999999999999999999999999887 55667889999999999999 678
Q ss_pred EEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146 156 MIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
.|++|+.|++|++||++. +++++|++|+.|+.|++||+++++++..+.+
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-------- 226 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-------- 226 (304)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC--------
T ss_pred EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC--------
Confidence 999999999999999864 3678999999999999999999999999887
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++++|++++ .||+|++||+..
T Consensus 227 --------------h~~~v~~~~~~p~~~~l~s~s--~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 227 --------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIWNSST 259 (304)
T ss_dssp --------------CSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTT
T ss_pred --------------CCCCEEEEEECCCCCEEEEEc--CCCeEEEEECCC
Confidence 888999999999999999999 999999999864
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-43 Score=276.94 Aligned_cols=229 Identities=22% Similarity=0.402 Sum_probs=201.6
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD- 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 78 (262)
+.|+++..|+ ..+....+..|...|.+++|+|++++|++|+.|+.|++|++..... .......+.+|...+..
T Consensus 74 s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~~~h~~~v~~~ 149 (340)
T 1got_B 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG----NVRVSRELAGHTGYLSCC 149 (340)
T ss_dssp ETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB----SCEEEEEEECCSSCEEEE
T ss_pred eCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC----cceeEEEecCCCccEEEE
Confidence 4689999986 4567788899999999999999999999999999999999865321 11112233344433322
Q ss_pred -------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146 79 -------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV 145 (262)
Q Consensus 79 -------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 145 (262)
.+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|
T Consensus 150 ~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v 229 (340)
T 1got_B 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229 (340)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred EECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCE
Confidence 2389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
.+++|+|++++|++++.||+|++||++. |++++|++|+.||.|++||+.+++.+..+.
T Consensus 230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence 9999999999999999999999999875 788999999999999999999999888887
Q ss_pred ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
+ |..+|.+++|+|++.+|++|+ .|+.|+||+
T Consensus 310 ~----------------------h~~~v~~~~~s~dg~~l~s~s--~D~~i~iWd 340 (340)
T 1got_B 310 G----------------------HDNRVSCLGVTDDGMAVATGS--WDSFLKIWN 340 (340)
T ss_dssp C----------------------CSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred c----------------------CCCcEEEEEEcCCCCEEEEEc--CCccEEecC
Confidence 7 889999999999999999999 899999996
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=270.17 Aligned_cols=235 Identities=24% Similarity=0.427 Sum_probs=200.4
Q ss_pred CCCCceeeecc----cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCc--cccCCc
Q 042146 2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQ--KFTGHE 73 (262)
Q Consensus 2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~--~~~~~~ 73 (262)
+.|++++.|+. ......+.+|..+|.+++|+|++.++++++.|++|++||+.......... ..... .+....
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg 134 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence 46899998863 23455789999999999999999999999999999999987643221111 11111 111111
Q ss_pred ccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 74 QGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 74 ~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
..+ ...+.|++|++++++....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEE
T ss_pred CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEE
Confidence 111 12348999999999998889899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
+|++++|++++.|+.|++||++. |++++|++++.|+.|++||+++++++..+.+
T Consensus 215 spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------ 288 (321)
T 3ow8_A 215 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD------ 288 (321)
T ss_dssp CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC------
Confidence 99999999999999999999876 7899999999999999999999999999887
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...|.+++|+|++.+|++++ .||.|++||..
T Consensus 289 ----------------h~~~v~~v~~s~~g~~l~s~~--~d~~i~vwd~p 320 (321)
T 3ow8_A 289 ----------------HQDQVWGVKYNGNGSKIVSVG--DDQEIHIYDCP 320 (321)
T ss_dssp ----------------CSSCEEEEEECTTSSEEEEEE--TTCCEEEEECC
T ss_pred ----------------CCCcEEEEEECCCCCEEEEEe--CCCeEEEEeCC
Confidence 888999999999999999999 89999999974
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-42 Score=277.28 Aligned_cols=227 Identities=30% Similarity=0.572 Sum_probs=200.3
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-- 77 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 77 (262)
+.|++|+.|+ ..+....+++|.++|.+++|+|++++|++|+.|++|++||+...... ..+.+|...+.
T Consensus 127 s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--------~~~~~h~~~V~~v 198 (410)
T 1vyh_C 127 SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--------RTMHGHDHNVSSV 198 (410)
T ss_dssp ESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--------ECCCCCSSCEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--------EEEcCCCCCEEEE
Confidence 4688988886 56688899999999999999999999999999999999998764322 22222322222
Q ss_pred -------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146 78 -------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144 (262)
Q Consensus 78 -------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (262)
..+.|++||+.++.++..+.+|...|.++.++|++.++++|+.|+.|++||++++++...+..|...
T Consensus 199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~ 278 (410)
T 1vyh_C 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278 (410)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence 2238999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEccC--------------------CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcC
Q 042146 145 VTAIDFNRD--------------------GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTL 184 (262)
Q Consensus 145 v~~~~~~~~--------------------~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~ 184 (262)
|.+++|+|+ +.+|++|+.|+.|++||++. +++++|++|+.
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 358 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999996 66899999999999999886 78999999999
Q ss_pred CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
||.|++||+++++++..+.+ |...|++++|+|++.+|++|+ .||+|++|++.
T Consensus 359 D~~i~vwd~~~~~~~~~~~~----------------------h~~~v~~l~~~~~~~~l~sgs--~D~~i~vW~~r 410 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCMKTLNA----------------------HEHFVTSLDFHKTAPYVVTGS--VDQTVKVWECR 410 (410)
T ss_dssp TTEEEEECCTTSCCCEEEEC----------------------CSSCEEEEEECSSSSCEEEEE--TTSEEEEEC--
T ss_pred CCeEEEEECCCCceEEEEcC----------------------CCCcEEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Confidence 99999999999999988887 888999999999999999999 89999999863
No 5
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-41 Score=261.72 Aligned_cols=242 Identities=60% Similarity=0.996 Sum_probs=204.3
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc------------
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------ 78 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------ 78 (262)
..+.+..++.+|.++|++++|+|++++|++++.||.|++|++..... ...+.+|...+..
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~l~s 82 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------EKTISGHKLGISDVAWSSDSNLLVS 82 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--------chhhccCCCceEEEEEcCCCCEEEE
Confidence 34667888999999999999999999999999999999998865322 1222233322222
Q ss_pred ---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 79 ---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 79 ---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
.+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|..+|.+++|+|+++
T Consensus 83 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
T 4ery_A 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162 (312)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence 23899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146 156 MIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
+|++++.||.|++||++. |++++|++++.||.|++||+++++++..+.++.....++..
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence 999999999999999876 78899999999999999999999999999887765554444
Q ss_pred EEecCCCeeEE-----------------------ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 215 TFSVTNGKYIV-----------------------SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 215 ~~~~~~~~~~~-----------------------~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+...++.+++ +|...|.+++|+|++++|++++.+.|+.|++|+.+
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 44333333222 28889999999999999999975469999999975
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-41 Score=266.31 Aligned_cols=231 Identities=21% Similarity=0.423 Sum_probs=199.6
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD- 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 78 (262)
+.|+++..|+ +.+..+.+..|...|.+++|+|++.+|++|+.|+.+++|++....... .......+..|...+..
T Consensus 83 s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~ 160 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVAMHTNYLSAC 160 (354)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC--SGGGCEEEEECSSCEEEE
T ss_pred eCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc--ccccceeeeccCCcEEEE
Confidence 4689999997 455677888899999999999999999999999999999986432111 11112223334333322
Q ss_pred --------------ceeEEEEecCCCccceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146 79 --------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 79 --------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (262)
.+.|++||+++++.+..+.+|...|.+++++| ++++|++|+.||.|++||+++++++..+..|.
T Consensus 161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~ 240 (354)
T 2pbi_B 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240 (354)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 23899999999999999999999999999988 56899999999999999999999999999999
Q ss_pred CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
..|.+++|+|++.+|++++.|++|++||++. +++++|++|+.|+.|++||+.+++.+.
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence 9999999999999999999999999999875 688999999999999999999999888
Q ss_pred EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
.+.+ |...|++++|+|++++|++|+ .|++|++|+
T Consensus 321 ~l~~----------------------h~~~v~~l~~spdg~~l~sgs--~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILFG----------------------HENRVSTLRVSPDGTAFCSGS--WDHTLRVWA 354 (354)
T ss_dssp EECC----------------------CSSCEEEEEECTTSSCEEEEE--TTSEEEEEC
T ss_pred EEEC----------------------CCCcEEEEEECCCCCEEEEEc--CCCCEEecC
Confidence 8876 889999999999999999999 899999996
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-41 Score=270.03 Aligned_cols=239 Identities=23% Similarity=0.415 Sum_probs=198.4
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI--- 76 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v--- 76 (262)
+.|++|+.|+ ..+....++.|...|.+++|+|++++|++|+.|+.+++|++....... ........+.+|...+
T Consensus 85 s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~ 163 (380)
T 3iz6_a 85 SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSC 163 (380)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCC
T ss_pred eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCccceeeccCCCcceEEE
Confidence 4689999997 456778899999999999999999999999999999999986532111 0111112233333222
Q ss_pred -------------ccceeEEEEecCCCccceec-----ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC-CCeeee
Q 042146 77 -------------SDLATIRLWDVPTATSLKTL-----IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK-TGKCLK 136 (262)
Q Consensus 77 -------------~~~~~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~ 136 (262)
...+.|++||+.+++.+..+ .+|...|.+++++| +++++++|+.|+.|++||++ .++.+.
T Consensus 164 ~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~ 243 (380)
T 3iz6_a 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243 (380)
T ss_dssp BCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred EEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 12338999999999887765 67889999999987 88999999999999999998 457788
Q ss_pred eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------CCccEEEEEcCCCeEE
Q 042146 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------------PNGKFILVGTLDNTLR 189 (262)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~ 189 (262)
.+.+|.+.|.+++|+|++++|++++.||+|++||++. |++++|++|+.||.|+
T Consensus 244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 8899999999999999999999999999999999875 6789999999999999
Q ss_pred EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+||+.+++.+..+..... +|.+.|.+++|+|++.+|++|+ .|++|++|++..
T Consensus 324 vwd~~~~~~~~~~~~~~~------------------~h~~~v~~l~~s~dg~~l~sgs--~D~~i~iW~~~~ 375 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQN------------------SHEGRISCLGLSSDGSALCTGS--WDKNLKIWAFSG 375 (380)
T ss_dssp EEETTTCCEEEEECCSCS------------------SCCCCCCEEEECSSSSEEEEEC--TTSCEEEEECCS
T ss_pred EEECCCCceEEEEecccC------------------CCCCceEEEEECCCCCEEEEee--CCCCEEEEecCC
Confidence 999999888877743211 1899999999999999999999 899999999864
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.8e-41 Score=259.17 Aligned_cols=240 Identities=27% Similarity=0.488 Sum_probs=195.5
Q ss_pred cccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc------------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL------------ 79 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------ 79 (262)
+.+..++++|.++|++++|+|++ ++|++|+.|++|++|++..... ....+...+.+|...+..+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 45667899999999999999965 8999999999999999854211 0112233444555444332
Q ss_pred ---eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC---
Q 042146 80 ---ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD--- 153 (262)
Q Consensus 80 ---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--- 153 (262)
+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||++ ++++..+.+|...|.+++|+|.
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 289999999999999999999999999999999999999999999999997 5567788899999999999984
Q ss_pred ---CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 154 ---GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 154 ---~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
+..+++++.|+.|++||++. |++++|++|+.||.|++||+++++++..+..+. .+.
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~ 241 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF 241 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-CEE
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-cEE
Confidence 44899999999999999875 789999999999999999999999988887643 333
Q ss_pred EEEEEEecCCCeeEEc-----------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 211 CISSTFSVTNGKYIVS-----------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+.|++....+..+ |...+.+++|+|++++|++|+ .||.|++|++..
T Consensus 242 --~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~--~Dg~i~vWd~~t 317 (319)
T 3frx_A 242 --SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY--TDNVIRVWQVMT 317 (319)
T ss_dssp --EEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE--TTSCEEEEEEEE
T ss_pred --EEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee--cCceEEEEEEee
Confidence 33444433322221 456789999999999999999 999999999864
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-41 Score=269.83 Aligned_cols=214 Identities=31% Similarity=0.564 Sum_probs=191.3
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---------------e
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---------------A 80 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------~ 80 (262)
...+.+|.++|++++|+|++++|++|+.||+|++||+++... ...+.+|...+..+ +
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------ERTLKGHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------CEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 567789999999999999999999999999999999875432 23334444433322 2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||+++++++..+.+|...|.++.++|++.+|++|
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCC--------------------CC--------------------ccEEEEEcCCCeEEEEecCCCceee
Q 042146 161 SYDGLYRILDAST--------------------PN--------------------GKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 161 ~~dg~i~~~d~~~--------------------~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
+.|++|++||++. |+ +.+|++|+.|+.|++||+++++++.
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 9999999999875 22 6689999999999999999999998
Q ss_pred EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+.+ |...|++++|+|++++|++++ .||.|++||+.+
T Consensus 333 ~~~~----------------------h~~~v~~v~~~~~g~~l~s~s--~D~~i~vwd~~~ 369 (410)
T 1vyh_C 333 TLVG----------------------HDNWVRGVLFHSGGKFILSCA--DDKTLRVWDYKN 369 (410)
T ss_dssp EEEC----------------------CSSCEEEEEECSSSSCEEEEE--TTTEEEEECCTT
T ss_pred EEEC----------------------CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCC
Confidence 8887 888999999999999999999 899999999864
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.7e-41 Score=263.87 Aligned_cols=236 Identities=19% Similarity=0.265 Sum_probs=182.3
Q ss_pred ecccCcCceEEEEEccCCCeEEEecC------CCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSA------EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------- 78 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------- 78 (262)
....|+..|++++|+|||++||+|+. |+.|++|+........ ........|...+..
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~----~~~~~~~~~~~~V~~~~~s~d~~~l~~s 112 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE----SLCTAGVQTEAGVTDVAWVSEKGILVAS 112 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG----GGCSEEEECSSCEEEEEEETTTEEEEEE
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce----eEecccCCCCCCEEEEEEcCCCCEEEEE
Confidence 34579999999999999999999997 7889999765432111 111111223322322
Q ss_pred -ceeEEEEecCCCccce----ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146 79 -LATIRLWDVPTATSLK----TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 79 -~~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (262)
.+.|++||+.+++... ...+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|++++|+|+
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 2289999998876543 23478999999999999999999999999999999999999999999999999999998
Q ss_pred CC-EEEEEeCCCeEEEEeCCC----------------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 154 GT-MIVTSSYDGLYRILDAST----------------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 154 ~~-~l~~~~~dg~i~~~d~~~----------------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
+. ++++++.||+|++||++. |+ +.+|++|+.|+.|++||+++++++..+.++...+
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v 272 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI 272 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence 75 789999999999999876 44 5689999999999999999999999999988877
Q ss_pred eEEEEEEecCCCeeEE----------------------ccccceEEEEEcC-CCCeEEEeeecCCCcEEEEeecc
Q 042146 210 YCISSTFSVTNGKYIV----------------------SHRDPVISVASHP-AKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.++. |++....+++ +|.+.|++++|+| ++.+|++++ .||+|++|+++.
T Consensus 273 ~~l~--~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s--~Dg~v~iW~~~~ 343 (357)
T 4g56_B 273 TGLA--YSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVG--WDHKVLHHHLPS 343 (357)
T ss_dssp EEEE--ECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECC-
T ss_pred EEEE--EcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEc--CCCeEEEEECCC
Confidence 6654 4444433332 1889999999999 789999999 899999999864
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=260.55 Aligned_cols=217 Identities=21% Similarity=0.407 Sum_probs=189.0
Q ss_pred cceecccCcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc------------
Q 042146 15 LTQTLNGHLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------ 78 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------ 78 (262)
+.+.+++|.++|.+++|+|+ +.+|++|+.|++|++|++..... .....+.+|...+..
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------~~~~~l~gh~~~v~~~~~~~~~~~l~s 97 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------DLQWSLEGHQLGVVSVDISHTLPIAAS 97 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------eeeeeeccCCCCEEEEEECCCCCEEEE
Confidence 45677899999999999985 56899999999999999854211 112233444444432
Q ss_pred ---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 79 ---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 79 ---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
.+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|+++
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence 23899999999999999998999999999999999999999999999999999999999989999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 156 MIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
+|++++.||.|++||+++ |++++|++|+.|+.|++||+++++++..+.+
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------- 246 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG----------- 246 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-----------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-----------
Confidence 999999999999999876 7899999999999999999999998888877
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++.+|++++ .|++|++||+.+
T Consensus 247 -----------h~~~v~~~~~sp~~~~l~s~s--~D~~v~iwd~~~ 279 (321)
T 3ow8_A 247 -----------HASWVLNVAFCPDDTHFVSSS--SDKSVKVWDVGT 279 (321)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT
T ss_pred -----------CCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCC
Confidence 888999999999999999999 899999999864
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=258.37 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=183.1
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC--C-CCCCCCCCccccCCcccc--------------ccceeE
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN--F-DSTPPSPLQKFTGHEQGI--------------SDLATI 82 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~-~~~~~~~~~~~~~~~~~v--------------~~~~~i 82 (262)
..|...|.+++|+|||++|++++ |+++++||...... . .............+...+ ...+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 45778899999999999999887 77888886321000 0 000000000000111111 122389
Q ss_pred EEEecCCCcccee----cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EE
Q 042146 83 RLWDVPTATSLKT----LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MI 157 (262)
Q Consensus 83 ~v~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 157 (262)
++||+.+++.+.. ..+|...|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|+|++. +|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999999876654 347999999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCeEEEEeCCC----------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146 158 VTSSYDGLYRILDAST----------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~----------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
++++.|++|++||++. + ++++|++|+.||.|++||+++++++..+.+|...+.++.
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~- 264 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV- 264 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE-
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE-
Confidence 9999999999999876 3 567899999999999999999999999999988877664
Q ss_pred EEecCCCeeEE-c---------------------cccceEEEEEcCCCC-eEEEeeecCCCcEEEEeeccC
Q 042146 215 TFSVTNGKYIV-S---------------------HRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 215 ~~~~~~~~~~~-~---------------------~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~~ 262 (262)
|++....+++ + |.+.|++++|+|+++ +|+++| .|++|++|+++.+
T Consensus 265 -fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s--~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 265 -FSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG--WDHQVVHHVVPTE 332 (344)
T ss_dssp -ECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECCC-
T ss_pred -EccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc--CCCeEEEEECCCC
Confidence 4443333332 2 889999999999986 567888 8999999998753
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.7e-39 Score=251.39 Aligned_cols=218 Identities=24% Similarity=0.404 Sum_probs=183.5
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---------------c
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI---------------S 77 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~ 77 (262)
.+...++++|.++|.+++|+|++++|++|+.||+|++||+...... ..+..+...+ .
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------EEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--------eEeecCCccEEEEEECCCCCEEEEEe
Confidence 4566789999999999999999999999999999999997653221 1122222221 1
Q ss_pred cceeEEEEecCCCc----cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146 78 DLATIRLWDVPTAT----SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 78 ~~~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (262)
..+.+++|++.+.+ ....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+.+|.+.|.+++|+|+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 22389999998753 3456778999999999998765 888999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
+++|++|+.|+.|++||++. |++++|++|+.||.|++||+++++.+..+....
T Consensus 196 ~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~------- 268 (340)
T 1got_B 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN------- 268 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------
T ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-------
Confidence 99999999999999999876 789999999999999999999988777665211
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+...|.+++|+|++++|++|+ .|+.|++||+.+
T Consensus 269 -------------~~~~v~~~~~s~~g~~l~~g~--~d~~i~vwd~~~ 301 (340)
T 1got_B 269 -------------IICGITSVSFSKSGRLLLAGY--DDFNCNVWDALK 301 (340)
T ss_dssp -------------CCSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred -------------cccceEEEEECCCCCEEEEEC--CCCeEEEEEccc
Confidence 445799999999999999999 899999999753
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-38 Score=248.05 Aligned_cols=243 Identities=24% Similarity=0.387 Sum_probs=186.1
Q ss_pred ccccceecccCcCceEEEEE-----cc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc------
Q 042146 12 PYTLTQTLNGHLRAVSYVKF-----SH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL------ 79 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~-----~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------ 79 (262)
.......+++|.++|++++| ++ ++++|++|+.|++|++||+....... ....+...+.+|...+..+
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSST
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCC
Confidence 45667889999999999999 76 89999999999999999986532110 0111223344555444333
Q ss_pred ---------eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeee
Q 042146 80 ---------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTA 147 (262)
Q Consensus 80 ---------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~ 147 (262)
+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .... ..|...|.+
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSC 167 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeee
Confidence 289999999999999999999999999999999999999999999999998443 3333 268889999
Q ss_pred EEEccCC----------CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCC-Cc
Q 042146 148 IDFNRDG----------TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYST-RK 197 (262)
Q Consensus 148 ~~~~~~~----------~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~-~~ 197 (262)
++|+|++ .+|++++.|+.|++||... |++++|++|+.||.|++||+.. ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 9999986 7899999999999999653 8999999999999999999954 33
Q ss_pred eeeEEeccCCceeEEEEEEecCCCeeE----------------------------------EccccceEEEEEcCCCCeE
Q 042146 198 ILKTYSGYTNSKYCISSTFSVTNGKYI----------------------------------VSHRDPVISVASHPAKNII 243 (262)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~~p~~~~l 243 (262)
+...+. +...+.++ .|++....+. .+|...|.+++|+|++++|
T Consensus 248 ~~~~~~-~~~~v~~v--~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 248 PQREFD-AGSTINQI--AFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp CSEEEE-CSSCEEEE--EECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred cceeec-CCCcEEEE--EECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 333332 22223322 2222111110 1356679999999999999
Q ss_pred EEeeecCCCcEEEEeecc
Q 042146 244 ASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 244 ~~~~~d~d~~i~iw~~~~ 261 (262)
++|+ .||.|++|+++.
T Consensus 325 ~sg~--~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 325 FAGF--TDGVIRTFSFET 340 (343)
T ss_dssp EEEE--TTSEEEEEEEEE
T ss_pred EEec--CCceEEEEEEEc
Confidence 9999 899999999863
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=252.40 Aligned_cols=235 Identities=20% Similarity=0.336 Sum_probs=184.3
Q ss_pred CCCCceeeecccc-----cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146 2 SSDRSLESFRPYT-----LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76 (262)
Q Consensus 2 s~d~~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 76 (262)
+.|++|+.|+... ......+|...|.+++|+|++++|++|+.|+++++|++.... ......+.+|...+
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~------~~~~~~~~~h~~~v 108 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD------FECVTTLEGHENEV 108 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-------EEEEEEECCCSSCE
T ss_pred cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC------eEEEEEccCCCCCc
Confidence 4689999986332 122346899999999999999999999999999999976431 11122333444433
Q ss_pred ccc---------------eeEEEEecCCCc---cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--eee
Q 042146 77 SDL---------------ATIRLWDVPTAT---SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--CLK 136 (262)
Q Consensus 77 ~~~---------------~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~ 136 (262)
..+ +.|++||+.++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++ +..
T Consensus 109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~ 188 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence 322 289999998764 345678899999999999999999999999999999998775 456
Q ss_pred eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------------------CCccEEE
Q 042146 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------------------PNGKFIL 180 (262)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------------------~~~~~l~ 180 (262)
.+.+|...|.+++|+|++++|++++.|++|++||... +++..|+
T Consensus 189 ~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA 268 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence 7889999999999999999999999999999998521 5567899
Q ss_pred EEcCCCeEEEEecCCCce----eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEE
Q 042146 181 VGTLDNTLRLWNYSTRKI----LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMK 255 (262)
Q Consensus 181 ~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~ 255 (262)
+++.|+.|++|+...+.. ...+..+ ...+|...|++++|+|++. +|++|+ .||.|+
T Consensus 269 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~~~p~~~~~laS~s--~Dg~v~ 329 (345)
T 3fm0_A 269 TACGDDAIRVFQEDPNSDPQQPTFSLTAH-----------------LHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVA 329 (345)
T ss_dssp EEETTSCEEEEEECTTSCTTSCCEEEEEE-----------------ETTSSSSCEEEEEECSSSTTEEEEEE--TTSCEE
T ss_pred EEeCCCeEEEEEeCCCCCcceeeEEEEee-----------------ecccccCcEeEeEEeCCCceEEEEcC--CCCcEE
Confidence 999999999999875431 1111100 0012889999999999984 999999 899999
Q ss_pred EEeecc
Q 042146 256 IWTQEK 261 (262)
Q Consensus 256 iw~~~~ 261 (262)
+|++.+
T Consensus 330 ~W~~~~ 335 (345)
T 3fm0_A 330 FWKYQR 335 (345)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999865
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.7e-39 Score=268.45 Aligned_cols=234 Identities=18% Similarity=0.270 Sum_probs=195.2
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-----C------------C----
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-----D------------S---- 60 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~------------~---- 60 (262)
++++..|+ ..+....+.+|...|++++|+|+|++||+|+.|++|+|||+...... . .
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCE
Confidence 34565665 45678889999999999999999999999999999999998532110 0 0
Q ss_pred -----------------CCCCCCccccCCccccccc----------------eeEEEEecCCCccceecccCCcceEEEE
Q 042146 61 -----------------TPPSPLQKFTGHEQGISDL----------------ATIRLWDVPTATSLKTLIGHTNYVFCIN 107 (262)
Q Consensus 61 -----------------~~~~~~~~~~~~~~~v~~~----------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 107 (262)
........+.+|...+..+ +.|++||..+++....+.+|...|.+++
T Consensus 118 l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence 0011122234444433222 2899999998888889999999999999
Q ss_pred EeCCCCEEEeecCCCeEEEEECCCCeeeeeee-------cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------
Q 042146 108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------- 173 (262)
Q Consensus 108 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------- 173 (262)
|+|++++|++|+.|++|++||+++++++..+. +|.+.|.+++|+|++++|++++.|++|++||+++
T Consensus 198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 99999999999999999999999998888774 7999999999999999999999999999999875
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 239 (262)
.+++.+++++.|+.+++||.+.+++...+.+ |...|++++|+|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g----------------------h~~~v~~l~~spd 335 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG----------------------HNKAITALSSSAD 335 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC----------------------CSSCEEEEEECTT
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC----------------------CCCCEEEEEEeCC
Confidence 1466789999999999999998887777766 8899999999999
Q ss_pred CCeEEEeeecCCCcEEEEeecc
Q 042146 240 KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 240 ~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+++|++++ .|++|++||+..
T Consensus 336 g~~l~s~s--~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 336 GKTLFSAD--AEGHINSWDIST 355 (611)
T ss_dssp SSEEEEEE--TTSCEEEEETTT
T ss_pred CCEEEEEe--CCCcEEEEECCC
Confidence 99999999 899999999863
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-38 Score=248.66 Aligned_cols=232 Identities=20% Similarity=0.372 Sum_probs=180.0
Q ss_pred ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce----------
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------- 80 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------- 80 (262)
..++..+|++|.++|++++|+|+ +++|+||+.|++|++||+....... ..+...+.+|...+..+.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---GIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---EEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---ceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 44567789999999999999997 6899999999999999987532210 011112222222221111
Q ss_pred -----------------------------------------------eEEEEecCCCcc-ceecccCCcceEEEEEeCCC
Q 042146 81 -----------------------------------------------TIRLWDVPTATS-LKTLIGHTNYVFCINFNPQS 112 (262)
Q Consensus 81 -----------------------------------------------~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~ 112 (262)
.+++||...... .....+|...+.+++|++++
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 677777765433 33456788999999998854
Q ss_pred --CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------
Q 042146 113 --NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------- 173 (262)
Q Consensus 113 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------- 173 (262)
.++++++.|+.|++||+++++.+..+.+|.++|++++|+|++++|++|+.||.|++||++.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 263 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 263 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence 5788999999999999999999999999999999999999999999999999999999987
Q ss_pred -CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146 174 -PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR 252 (262)
Q Consensus 174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~ 252 (262)
..+..+++++.|+.|++||++++..+..+...... ....+|...|++++|+|++++|++|+ .||
T Consensus 264 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~h~~~v~~l~~s~dg~~l~sgs--~Dg 328 (340)
T 4aow_A 264 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS-------------TSSKAEPPQCTSLAWSADGQTLFAGY--TDN 328 (340)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--------------------CCCCCEEEEEECTTSSEEEEEE--TTS
T ss_pred cCCCCceeeccCCCEEEEEECCCCeEEEecccccee-------------eeccCCCCCEEEEEECCCCCEEEEEe--CCC
Confidence 23345667778999999999998888777643211 11123889999999999999999999 899
Q ss_pred cEEEEeecc
Q 042146 253 TMKIWTQEK 261 (262)
Q Consensus 253 ~i~iw~~~~ 261 (262)
.|+||+++.
T Consensus 329 ~v~iW~~~t 337 (340)
T 4aow_A 329 LVRVWQVTI 337 (340)
T ss_dssp CEEEEEEEC
T ss_pred EEEEEeCCC
Confidence 999999874
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=248.47 Aligned_cols=235 Identities=22% Similarity=0.360 Sum_probs=177.9
Q ss_pred CCCCceeeeccc----ccceec-cc-CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146 2 SSDRSLESFRPY----TLTQTL-NG-HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~~~----~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262)
+.|++|+.|+.. +....+ .+ |.++|.+++|+|++++|++|+.|++|++|+++.... ..........+.+|...
T Consensus 31 ~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 31 STDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENE 109 (330)
T ss_dssp ESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC----C
T ss_pred cCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC-ccccceeEEEEcCCCCc
Confidence 468999998632 345555 44 999999999999999999999999999999854211 00111223334455544
Q ss_pred cccce---------------eEEEEecCCC----ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--ee
Q 042146 76 ISDLA---------------TIRLWDVPTA----TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KC 134 (262)
Q Consensus 76 v~~~~---------------~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~ 134 (262)
+..+. .|++||+... +.+..+.+|...|.+++|+|++++|++++.|++|++||++++ ++
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence 43332 8999999432 355678899999999999999999999999999999998766 67
Q ss_pred eeeeecCCCCeeeEEEccC--CCEEEEEeCCCeEEEEeCCC----------------------------CCccEEEEEcC
Q 042146 135 LKVLPAHSDPVTAIDFNRD--GTMIVTSSYDGLYRILDAST----------------------------PNGKFILVGTL 184 (262)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~----------------------------~~~~~l~~~~~ 184 (262)
+..+.+|...|.+++|+|+ +..|++++.|++|++||++. ..+.+|++++.
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~ 269 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA 269 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEET
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeC
Confidence 8888999999999999998 67899999999999998742 12457999999
Q ss_pred CCeEEEEecCCCce--eeEE-eccCCceeEEEEEEecCCCeeEEcccc-ceEEEEEcC--CCCeEEEeeecCCCcEEEEe
Q 042146 185 DNTLRLWNYSTRKI--LKTY-SGYTNSKYCISSTFSVTNGKYIVSHRD-PVISVASHP--AKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 185 dg~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p--~~~~l~~~~~d~d~~i~iw~ 258 (262)
||.|++||..+++. .... .. |.. .|.+++|+| ++++|++|+ .||.|++|+
T Consensus 270 dg~v~iw~~~~~~~~~~~~~~~~----------------------h~~~~v~~v~~~~~~~~~~las~s--~Dg~v~~W~ 325 (330)
T 2hes_X 270 DGVLAVYEEVDGEWKVFAKRALC----------------------HGVYEINVVKWLELNGKTILATGG--DDGIVNFWS 325 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEESCT----------------------TTTSCEEEEEEC-----CCEEEEE--TTSEEEEEE
T ss_pred CCEEEEEEcCCCceEEEeccccc----------------------cccceEEEEEEecCCCceEEEEec--CCCcEEEEE
Confidence 99999999887642 2222 22 666 899999999 689999999 899999999
Q ss_pred ecc
Q 042146 259 QEK 261 (262)
Q Consensus 259 ~~~ 261 (262)
+++
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 865
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.8e-38 Score=246.53 Aligned_cols=227 Identities=21% Similarity=0.318 Sum_probs=182.8
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCcc--ccCCcccc---ccceeEEEE
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQK--FTGHEQGI---SDLATIRLW 85 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~--~~~~~~~v---~~~~~i~v~ 85 (262)
.+...++++|.++|++++|+|++++|++|+.||+|++||........... ...+.. +......+ ...+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 34667889999999999999999999999999999999976532211000 000111 11111111 122389999
Q ss_pred ecCCC------ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc--CCCEE
Q 042146 86 DVPTA------TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR--DGTMI 157 (262)
Q Consensus 86 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 157 (262)
++... .....+..|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+| ++++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 98643 23455678999999999999999999999999999999999999999999999999999988 56899
Q ss_pred EEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 158 VTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
++|+.||.|++||+++ |++++|++|+.|+.|++||++.++.+..+..+.
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~----------- 282 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES----------- 282 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-----------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-----------
Confidence 9999999999999876 789999999999999999999887776665321
Q ss_pred cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+...+.+++|+|++.+|++++ .|+.|++||+.+
T Consensus 283 ---------~~~~~~~~~~s~~g~~l~~g~--~d~~i~vwd~~~ 315 (354)
T 2pbi_B 283 ---------IIFGASSVDFSLSGRLLFAGY--NDYTINVWDVLK 315 (354)
T ss_dssp ---------CCSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT
T ss_pred ---------cccceeEEEEeCCCCEEEEEE--CCCcEEEEECCC
Confidence 345789999999999999999 899999999853
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6e-38 Score=241.15 Aligned_cols=217 Identities=15% Similarity=0.269 Sum_probs=174.1
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc-----------------c
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-----------------D 78 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------~ 78 (262)
+..+.+|.+.|++++|+|+|++||+|+.|++|++||++... ......+.+|...|. .
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 35678999999999999999999999999999999986421 112223333333221 2
Q ss_pred ceeEEEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEcc
Q 042146 79 LATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 79 ~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~ 152 (262)
.+.|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|.+++|+|
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence 2389999998774 55667789999999999997 8899999999999999998763 2456678999999999999
Q ss_pred C-------------CCEEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEEEEe
Q 042146 153 D-------------GTMIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLRLWN 192 (262)
Q Consensus 153 ~-------------~~~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~i~d 192 (262)
+ +++|++|+.|++|++||++. |+ +.+|++++.|+.|++||
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 6 57999999999999999753 55 48999999999999999
Q ss_pred cCCCce--e-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 193 YSTRKI--L-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 193 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+++... . ..+... .|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 236 ~~~~~~~~~~~~~~~~--------------------~~~~~v~~~~~s~~g~~las~~--~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEE--------------------KFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSS--------------------CCSSCEEEEEECSSSCCEEEEE--TTSCEEEEEEC
T ss_pred eCCCCCccceeeeecc--------------------cCCCcEEEEEECCCCCEEEEEc--CCCcEEEEEEC
Confidence 986431 1 111100 1778999999999999999999 89999999976
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-38 Score=262.65 Aligned_cols=244 Identities=24% Similarity=0.360 Sum_probs=192.3
Q ss_pred CceeeecccccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-----
Q 042146 5 RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD----- 78 (262)
Q Consensus 5 ~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~----- 78 (262)
++++.|+..+....+.+|.+.|++++|+|++. .|++|+.|++|++||....+ ....+.+|...+..
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------FKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------EEEEECCCSSCEEEEEECT
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--------EeeeeccccCceEEEEECC
Confidence 47888888888889999999999999999987 59999999999999875432 12233344433332
Q ss_pred ----------ceeEEEEecCCCccceecc-------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee-----
Q 042146 79 ----------LATIRLWDVPTATSLKTLI-------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK----- 136 (262)
Q Consensus 79 ----------~~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----- 136 (262)
.+.|++||+.+++.+..+. +|...|.+++|+|++++|++++.|++|++||+++++++.
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 2389999999988877773 799999999999999999999999999999998776543
Q ss_pred --------------------------------------eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146 137 --------------------------------------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----- 173 (262)
Q Consensus 137 --------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 173 (262)
.+.+|...|++++|+|++++|++++.|++|++||+..
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 3346889999999999999999999999999999642
Q ss_pred --------------------------------------------------------------------------------
Q 042146 174 -------------------------------------------------------------------------------- 173 (262)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (262)
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecCCCce--eeEEeccCCceeEEEEEEecCCCeeE----------
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVTNGKYI---------- 224 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 224 (262)
|++++|++|+.|+.|++||+.+++. +.. ..|...+.++. |+++...++
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~--fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA--FSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE--ECTTSSEEEEEETTSCEEE
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE--ECCCCCEEEEEcCCCCEEE
Confidence 3467888899999999999876543 223 45555555443 333222111
Q ss_pred ---------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 225 ---------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 225 ---------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+|...|.+++|+|++++|++++ .|++|++|+++.
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs--~D~~v~lW~~~~ 567 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS--LDNSVIVWNMNK 567 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTC
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE--CCCcEEEEECCC
Confidence 12888999999999999999999 899999999864
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-37 Score=247.73 Aligned_cols=204 Identities=29% Similarity=0.532 Sum_probs=173.8
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeEEEEecCC
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATIRLWDVPT 89 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i~v~d~~~ 89 (262)
.|++++|+|++++|++|+.|++|++||+++... ...+.+|...+.. .+.|++||+.+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--------EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 499999999999999999999999999876432 2223333333322 23899999999
Q ss_pred CccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee-------ecCCCCeeeEEEccCCCEEEEEe
Q 042146 90 ATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL-------PAHSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~ 161 (262)
++....+. +...+.+++|+| +++++++|+.||.|++||+++++.+..+ .+|...|.+++|+|++++|++++
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 88777665 567799999999 8999999999999999999998877766 57889999999999999999999
Q ss_pred CCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 162 YDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 162 ~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
.|+.|++||++. +++.+|++|+.|+.|++||+++++++..+.+
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~----- 350 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG----- 350 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----
Confidence 999999999853 5678999999999999999999999988887
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcC------CCCeEEEeeecCCCcEEEEeecc
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHP------AKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+| ++++|++|+ .||+|+||++++
T Consensus 351 -----------------h~~~v~~v~~~~~~~~~p~~~~l~sgs--~Dg~i~iW~~~~ 389 (393)
T 1erj_A 351 -----------------HRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYKK 389 (393)
T ss_dssp -----------------CSSCEEEEEECSSCTTCTTCEEEEEEE--TTSEEEEEEEEE
T ss_pred -----------------CCCCEEEEEecCCcCcCCCCCEEEEEC--CCCcEEECcccc
Confidence 888899999876 688999999 899999999864
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-37 Score=238.81 Aligned_cols=227 Identities=23% Similarity=0.387 Sum_probs=188.2
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
+.|++++.|+ ....+..+..|..+|.+++|+|++++|++|+.|++|++||+.... ....+.+|...+..+
T Consensus 32 ~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--------~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 32 LYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--------KVVDFEAHPDYIRSI 103 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEE
T ss_pred cCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--------EEEEEeCCCCcEEEE
Confidence 3688888886 456788899999999999999999999999999999999986532 223344444443332
Q ss_pred ---------------eeEEEEecCCCc-cceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeee-cC
Q 042146 80 ---------------ATIRLWDVPTAT-SLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLP-AH 141 (262)
Q Consensus 80 ---------------~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~ 141 (262)
+.|++||++++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||++++.+...+. .|
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 289999998774 4567889999999999999 67899999999999999998877655554 45
Q ss_pred CCCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146 142 SDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKIL 199 (262)
Q Consensus 142 ~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~ 199 (262)
...+..+.|+| ++.+|++++.|++|++||++. |++++|++|+.||.|++||+++++++
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 67899999987 678999999999999999886 78899999999999999999999999
Q ss_pred eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC--eEEEeeecCCCcEEEEeecc
Q 042146 200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN--IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+.. |...+.+++|+|++. ++++|+ |..+.+|++.+
T Consensus 264 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~asg~---~~g~~~~~~~~ 302 (304)
T 2ynn_A 264 KTLNV----------------------GLERSWCIATHPTGRKNYIASGF---DNGFTVLSLGN 302 (304)
T ss_dssp EEECC----------------------SSSSEEEEEECTTCGGGCEEEEE---TTEEEEEECC-
T ss_pred eeccC----------------------CCccEEEEEECCCCCceEEEEec---CCceEEEEecc
Confidence 99887 778999999999875 477775 45677887764
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=246.41 Aligned_cols=239 Identities=18% Similarity=0.334 Sum_probs=179.4
Q ss_pred ccccceecccCcC-ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-----CCCCCCCCccccCC--cccc---ccce
Q 042146 12 PYTLTQTLNGHLR-AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-----DSTPPSPLQKFTGH--EQGI---SDLA 80 (262)
Q Consensus 12 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~--~~~v---~~~~ 80 (262)
.+++++++.+|.+ .|.+++|+|++++||+|+.|++|+|||++..... .......+..+... ...+ ...+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567788999988 9999999999999999999999999998653210 00111111111111 1111 1123
Q ss_pred eEEEEecCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCeeeEEEccCCC
Q 042146 81 TIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 81 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
.+++|+...+. .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ +++..+..|...|.+++|+|+++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 89999998764 56788899999999999999999999999999999999865 34667788999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc--CCceeE
Q 042146 156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY--TNSKYC 211 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~ 211 (262)
+|++++.|+.|++||.+. |++++|++|+.|+.|++||.........+... .....+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 999999999999999754 78999999999999999997432211111000 000001
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+.. +...|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 244 ~~~--------~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~ 282 (345)
T 3fm0_A 244 ICT--------LSGFHSRTIYDIAWCQLTGALATAC--GDDAIRVFQED 282 (345)
T ss_dssp EEE--------ECSSCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEEC
T ss_pred eEE--------ecCCCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEeC
Confidence 000 0011788999999999999999999 89999999875
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-36 Score=254.29 Aligned_cols=250 Identities=30% Similarity=0.478 Sum_probs=201.1
Q ss_pred CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-CCCCCccc--cCCcccc-
Q 042146 2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-PPSPLQKF--TGHEQGI- 76 (262)
Q Consensus 2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~--~~~~~~v- 76 (262)
+.|++++.|+ +.+....+.+|..+|.+++|+|++++|++++.|++|++||+......... ....+..+ ......+
T Consensus 281 ~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 360 (577)
T 2ymu_A 281 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 3578888886 45677888999999999999999999999999999999997653211100 01111111 1111111
Q ss_pred --ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC
Q 042146 77 --SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG 154 (262)
Q Consensus 77 --~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (262)
...+.+++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++
T Consensus 361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp EEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC
Confidence 12237999995 56778888999999999999999999999999999999995 577888889999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146 155 TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
++|++++.|+.|++||... |++++|++++.|+.|++||. +++++..+.+|...+.++.+
T Consensus 439 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~- 516 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF- 516 (577)
T ss_dssp SEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE-
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEE-
Confidence 9999999999999999754 89999999999999999995 68899999998887776543
Q ss_pred EecCCCee---------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 216 FSVTNGKY---------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 216 ~~~~~~~~---------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
++....+ +.+|.++|++++|+|++++|++++ .|++|++||
T Consensus 517 -s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~--~D~~i~~Wd 577 (577)
T 2ymu_A 517 -SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--SDKTVKLWN 577 (577)
T ss_dssp -CTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred -cCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCCEEEEeC
Confidence 3322222 233899999999999999999999 899999997
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-37 Score=247.54 Aligned_cols=232 Identities=19% Similarity=0.359 Sum_probs=182.1
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCC--ccccCCcccc---ccceeEEE
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPL--QKFTGHEQGI---SDLATIRL 84 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~--~~~~~~~~~v---~~~~~i~v 84 (262)
.....+++++|.++|++++|+|++++|++|+.||+|++||+.......... ...+ ..+......+ .....+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 344667899999999999999999999999999999999986542211000 0000 1111111111 12238999
Q ss_pred EecCCCc-------cceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeee-----ecCCCCeeeEEEc
Q 042146 85 WDVPTAT-------SLKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVL-----PAHSDPVTAIDFN 151 (262)
Q Consensus 85 ~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~ 151 (262)
|++.+.. ....+.+|...|.++.|.|+ +..|++|+.|++|++||+++++.+..+ .+|...|.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9986532 34567889999999999996 567999999999999999999888776 5788999999998
Q ss_pred c-CCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 152 R-DGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 152 ~-~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
| ++++|++|+.|++|++||++. |++++|++|+.||.|++||+++++++..+..+....
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 889999999999999999873 789999999999999999999999888876532210
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
. .+...|++++|+|++++|++|+ .||.|++||+.
T Consensus 295 ~---------------~~~~~v~~~~~s~~g~~l~~g~--~dg~i~vwd~~ 328 (380)
T 3iz6_a 295 D---------------NELPIVTSVAFSISGRLLFAGY--SNGDCYVWDTL 328 (380)
T ss_dssp C---------------CSSCSCSEEEECSSSSEEEEEC--TTSCEEEEETT
T ss_pred c---------------cccCceEEEEECCCCCEEEEEE--CCCCEEEEECC
Confidence 0 0334589999999999999999 89999999974
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-37 Score=239.30 Aligned_cols=224 Identities=21% Similarity=0.314 Sum_probs=167.3
Q ss_pred cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC--CC---CC-CCCCCccccC--Ccccc---ccc
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN--FD---ST-PPSPLQKFTG--HEQGI---SDL 79 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~---~~-~~~~~~~~~~--~~~~v---~~~ 79 (262)
.+.++++.+++|.++|.+++|+|+ +|++|+.|++|++||+..... .. .. ....+..+.. ....+ ...
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345677889999999999999998 999999999999999875311 00 00 1111111111 11111 122
Q ss_pred eeEEEEecCC-------CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC----CeeeeeeecCCCCeeeE
Q 042146 80 ATIRLWDVPT-------ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT----GKCLKVLPAHSDPVTAI 148 (262)
Q Consensus 80 ~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~ 148 (262)
+.|++||++. .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+++..+.+|...|.++
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 3899999853 345567889999999999999999999999999999999943 25677788999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC----------------------CC--ccEEEEEcCCCeEEEEecCCCc-------
Q 042146 149 DFNRDGTMIVTSSYDGLYRILDAST----------------------PN--GKFILVGTLDNTLRLWNYSTRK------- 197 (262)
Q Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~--~~~l~~~~~dg~i~i~d~~~~~------- 197 (262)
+|+|++.+|++++.|++|++||.+. ++ +.+|++|+.|+.|++||++.+.
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 9999999999999999999998643 44 5689999999999999987542
Q ss_pred -eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 198 -ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+...+.. .|...|.+++|+|++ +|++++ .||.|++|+..
T Consensus 240 ~~~~~~~~---------------------~h~~~v~~v~~s~~~-~l~s~~--~dg~v~iw~~~ 279 (330)
T 2hes_X 240 VCEAILPD---------------------VHKRQVYNVAWGFNG-LIASVG--ADGVLAVYEEV 279 (330)
T ss_dssp EEEEECCS---------------------CCSSCEEEEEECTTS-CEEEEE--TTSCEEEEEEE
T ss_pred EEeeeccc---------------------ccccceEEEEEcCCC-EEEEEe--CCCEEEEEEcC
Confidence 1111111 178899999999765 789999 89999999975
No 28
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.4e-38 Score=242.36 Aligned_cols=214 Identities=16% Similarity=0.251 Sum_probs=166.1
Q ss_pred eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-----------------ccc
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-----------------SDL 79 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~ 79 (262)
..+.+|.++|++++|+|++++||+|+.|++|++||+..... .....+.+|...| ...
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 45679999999999999999999999999999999865321 0111222222222 123
Q ss_pred eeEEEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEcc
Q 042146 80 ATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 80 ~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~ 152 (262)
+.|++||+++++ ....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+. ....+..|...+.+++|+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 389999998874 45667889999999999997 7899999999999999998753 2345678999999999999
Q ss_pred C-----------------CCEEEEEeCCCeEEEEeCCC-----------------------CCc----cEEEEEcCCCeE
Q 042146 153 D-----------------GTMIVTSSYDGLYRILDAST-----------------------PNG----KFILVGTLDNTL 188 (262)
Q Consensus 153 ~-----------------~~~l~~~~~dg~i~~~d~~~-----------------------~~~----~~l~~~~~dg~i 188 (262)
+ +++|++|+.|++|++||++. |++ .+|++|+.||.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 7 46899999999999999752 444 789999999999
Q ss_pred EEEecCCCc----eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 189 RLWNYSTRK----ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 189 ~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
++|++++.. ....+.. |...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~----------------------~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~ 292 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHK----------------------FNDVVWHVSWSITANILAVSG--GDNKVTLWKES 292 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEE----------------------CSSCEEEEEECTTTCCEEEEE--SSSCEEEEEEC
T ss_pred EEEEccCccccchhhhhhhc----------------------CCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEEC
Confidence 999987632 1122222 788999999999999999999 89999999975
No 29
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.9e-36 Score=239.98 Aligned_cols=226 Identities=23% Similarity=0.402 Sum_probs=185.1
Q ss_pred CCCceeeec--ccccceec--ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 3 SDRSLESFR--PYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
.|++|+.|+ +.+..+.+ .+|...|++++|+|+|++||+|+.||+|++||++.... +..+.+|...+..
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--------~~~~~~h~~~v~~ 194 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--------LRNMTSHSARVGS 194 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEEECCCSSCEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--------EEEEeCCCCceEE
Confidence 378888886 44455544 57888999999999999999999999999999876432 2233333333322
Q ss_pred c-------------eeEEEEecCCCc-cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe----eeeeeec
Q 042146 79 L-------------ATIRLWDVPTAT-SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK----CLKVLPA 140 (262)
Q Consensus 79 ~-------------~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~ 140 (262)
+ ..+++||..... .+..+.+|...+..+.++|+++++++++.|+.|++|+..+++ .+.....
T Consensus 195 ~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~ 274 (420)
T 4gga_A 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274 (420)
T ss_dssp EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence 2 289999987644 456788999999999999999999999999999999998764 3456677
Q ss_pred CCCCeeeEEEccCCC-EEEE--EeCCCeEEEEeCCC-------------------CCccEEEEEc--CCCeEEEEecCCC
Q 042146 141 HSDPVTAIDFNRDGT-MIVT--SSYDGLYRILDAST-------------------PNGKFILVGT--LDNTLRLWNYSTR 196 (262)
Q Consensus 141 ~~~~v~~~~~~~~~~-~l~~--~~~dg~i~~~d~~~-------------------~~~~~l~~~~--~dg~i~i~d~~~~ 196 (262)
|...|.+++|+|.+. .+++ |+.|++|++||+++ ++++.+++++ .|+.|+|||++++
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 899999999999654 5555 35799999999987 6777777654 7899999999999
Q ss_pred ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+++..+.+ |.+.|++++|+|++++|+||+ .|++|+|||+.
T Consensus 355 ~~v~~l~g----------------------H~~~V~~l~~spdg~~l~S~s--~D~tvriWdv~ 394 (420)
T 4gga_A 355 AKVAELKG----------------------HTSRVLSLTMSPDGATVASAA--ADETLRLWRCF 394 (420)
T ss_dssp CEEEEECC----------------------CSSCEEEEEECTTSSCEEEEE--TTTEEEEECCS
T ss_pred cEEEEEcC----------------------CCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECC
Confidence 99999987 899999999999999999999 89999999985
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3e-35 Score=229.38 Aligned_cols=225 Identities=16% Similarity=0.301 Sum_probs=188.7
Q ss_pred CCceeeecccc-----cceecc--cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146 4 DRSLESFRPYT-----LTQTLN--GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76 (262)
Q Consensus 4 d~~i~~~~~~~-----~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 76 (262)
|+.+..|+... ....+. +|..+|.+++|+|++++|++++.|+.|++||+...... ....+..+...+
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~i 144 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------IKAELTSSAPAC 144 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------EEEEEECSSSCE
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc------eeeecccCCCce
Confidence 78888886322 233333 79999999999999999999999999999998764310 111111121111
Q ss_pred ---------------ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC
Q 042146 77 ---------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141 (262)
Q Consensus 77 ---------------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 141 (262)
...+.|++||+++++.+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. +
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~ 223 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F 223 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-C
Confidence 112389999999999999999999999999999999999999999999999999998888774 7
Q ss_pred CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202 (262)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 202 (262)
..++.+++|+|++++|++++.++.|++||++. +++++|++++.||.|++||+++++.+...
T Consensus 224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 88999999999999999999999999999876 78999999999999999999998887554
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
. |...|.+++|+|++++|++++ .||.|++|++.
T Consensus 304 ~-----------------------~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~ 336 (337)
T 1gxr_A 304 K-----------------------ESSSVLSCDISVDDKYIVTGS--GDKKATVYEVI 336 (337)
T ss_dssp E-----------------------CSSCEEEEEECTTSCEEEEEE--TTSCEEEEEEE
T ss_pred c-----------------------CCCcEEEEEECCCCCEEEEec--CCCeEEEEEEe
Confidence 3 788999999999999999999 89999999973
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.8e-36 Score=255.35 Aligned_cols=246 Identities=21% Similarity=0.419 Sum_probs=186.7
Q ss_pred CCCCceeeeccc-------ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 2 SSDRSLESFRPY-------TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
+.|++|+.|+.. ...+.+.+|...|.+++|+|++++|++|+.||+|++||+..... ...+.+|..
T Consensus 402 s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~--------~~~~~~h~~ 473 (694)
T 3dm0_A 402 SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS--------TRRFVGHTK 473 (694)
T ss_dssp ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSS
T ss_pred eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc--------eeEEeCCCC
Confidence 468999999632 24567889999999999999999999999999999999865322 223334443
Q ss_pred ccccc---------------eeEEEEecCCCccce---ecccCCcceEEEEEeCCC--CEEEeecCCCeEEEEECCCCee
Q 042146 75 GISDL---------------ATIRLWDVPTATSLK---TLIGHTNYVFCINFNPQS--NRIVSDTFNETIRIWDIKTGKC 134 (262)
Q Consensus 75 ~v~~~---------------~~i~v~d~~~~~~~~---~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 134 (262)
.+..+ +.|++||........ ...+|...|.+++|+|++ ..+++++.|+.|++||+++++.
T Consensus 474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 33322 289999986543322 224688999999999976 6899999999999999999999
Q ss_pred eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCC
Q 042146 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~ 195 (262)
...+.+|.+.|++++|+|++++|++++.||.|++||+++ |++.++++++ ++.|++||+++
T Consensus 554 ~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~ 632 (694)
T 3dm0_A 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES 632 (694)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence 999999999999999999999999999999999999876 6666666655 56799999999
Q ss_pred CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++.+..+..+.......... ........+...+++++|+|++++|++|+ .||.|++|++.+
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~spdg~~l~sgs--~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 633 KSIVEDLKVDLKAEAEKADN---SGPAATKRKVIYCTSLNWSADGSTLFSGY--TDGVIRVWGIGR 693 (694)
T ss_dssp TEEEEEECCCCC-------------------CCCCEEEEEECTTSSEEEEEE--TTSEEEEEEC--
T ss_pred CCChhhhccccccccccccc---cccccCCceeEEeeeEEEcCCCCEEEEEc--CCCeEEEEeccC
Confidence 99888876532211000000 00000001223578999999999999999 999999999864
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=238.85 Aligned_cols=228 Identities=14% Similarity=0.243 Sum_probs=177.5
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCC--CCCC--CCCCCCccccC--C--cccc---ccceeE
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS--NFDS--TPPSPLQKFTG--H--EQGI---SDLATI 82 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~--~~~~~~~~~~~--~--~~~v---~~~~~i 82 (262)
+++..+++|.++|++++|+|++++|++|+.||.|++|++.... .... .....+..+.. . ...+ ...+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4567889999999999999999999999999999999986321 1000 01111111111 1 1111 122389
Q ss_pred EEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEcc----
Q 042146 83 RLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNR---- 152 (262)
Q Consensus 83 ~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~---- 152 (262)
++||+.+++ .+..+..|...|.+++|+|+ ++++++++.||.|++||++++. ....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999887 67778889999999999998 9999999999999999998773 3445678999999999999
Q ss_pred ---------CCCEEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEEEEecCCC
Q 042146 153 ---------DGTMIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 153 ---------~~~~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~i~d~~~~ 196 (262)
++.+|++++.||.|++||++. |+ +++|++++.||.|++||++++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999999999999999764 67 899999999999999999986
Q ss_pred ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
........... ..|...|.+++|+|++++|++++ .||.|++|+++
T Consensus 242 ~~~~~~~~~~~-----------------~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iw~~~ 286 (379)
T 3jrp_A 242 QGPWKKTLLKE-----------------EKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN 286 (379)
T ss_dssp TSCCEEEESSS-----------------SCCSSCEEEEEECSSSCCEEEEE--SSSSEEEEEEE
T ss_pred Cccceeeeecc-----------------ccCCCcEEEEEEcCCCCEEEEec--CCCcEEEEeCC
Confidence 42211110000 01778999999999999999999 89999999986
No 33
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.2e-36 Score=234.33 Aligned_cols=244 Identities=16% Similarity=0.209 Sum_probs=175.0
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC------CCCCCCCccccCCc---c-cc---ccceeE
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD------STPPSPLQKFTGHE---Q-GI---SDLATI 82 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~------~~~~~~~~~~~~~~---~-~v---~~~~~i 82 (262)
...+.+|.++|++++|+|++++|++|+.||.|++||+....... ......+..+.... . .+ ...+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45678999999999999999999999999999999987532110 00111111111111 1 11 122389
Q ss_pred EEEecCCC---------ccceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeeeeee------------
Q 042146 83 RLWDVPTA---------TSLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLP------------ 139 (262)
Q Consensus 83 ~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------ 139 (262)
++||+.++ +.+..+..|...|.+++|+|+ ++++++++.||.|++||+++++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 446677889999999999999 9999999999999999998876554432
Q ss_pred -cCCCCeeeEEEccC---CCEEEEEeCCCeEEEEeCCC----------------------CCc----cEEEEEcCCCeEE
Q 042146 140 -AHSDPVTAIDFNRD---GTMIVTSSYDGLYRILDAST----------------------PNG----KFILVGTLDNTLR 189 (262)
Q Consensus 140 -~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~----------------------~~~----~~l~~~~~dg~i~ 189 (262)
.|...+.+++|+|+ +.++++++.++.+.+|+... |++ ++|++|+.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 57789999999997 89999999999998877554 666 8999999999999
Q ss_pred EEecCCCceeeEEeccCCceeEEEE---------------------E---EecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISS---------------------T---FSVTNGKYIVSHRDPVISVASHPAKNIIAS 245 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 245 (262)
+||++.+.................. . ........+.+|...|++++|+|++++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 9999876433222111100000000 0 000001112348899999999999999999
Q ss_pred eeecCCCcEEEEeecc
Q 042146 246 GALDNDRTMKIWTQEK 261 (262)
Q Consensus 246 ~~~d~d~~i~iw~~~~ 261 (262)
++ .||.|++|+++.
T Consensus 324 ~~--~dg~v~iw~~~~ 337 (351)
T 3f3f_A 324 AG--DDGKVRLWKATY 337 (351)
T ss_dssp EE--TTSCEEEEEECT
T ss_pred ec--CCCcEEEEecCc
Confidence 99 899999999874
No 34
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-36 Score=238.54 Aligned_cols=227 Identities=24% Similarity=0.405 Sum_probs=188.5
Q ss_pred CCCceeeec--ccccceeccc-CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 3 SDRSLESFR--PYTLTQTLNG-HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
.|++|..|+ ..+....+.. |...|.+++|+|++++|++|+.||.|++||+.... ....+.+|...+..+
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT--------KLRTMAGHQARVGCL 182 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEE
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe--------EEEEecCCCCceEEE
Confidence 578888886 4445555554 89999999999999999999999999999986532 222333333333222
Q ss_pred -------------eeEEEEecC-CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146 80 -------------ATIRLWDVP-TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV 145 (262)
Q Consensus 80 -------------~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 145 (262)
+.|++||++ ....+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..|...|
T Consensus 183 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 183 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred EECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 389999998 456677888999999999999999999999999999999999999999998999999
Q ss_pred eeEEEccCCC-EEEEEe--CCCeEEEEeCCC-------------------CCccEEEE--EcCCCeEEEEecCCCceeeE
Q 042146 146 TAIDFNRDGT-MIVTSS--YDGLYRILDAST-------------------PNGKFILV--GTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 146 ~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~-------------------~~~~~l~~--~~~dg~i~i~d~~~~~~~~~ 201 (262)
.+++|+|++. ++++++ .|+.|++||++. ++++++++ |+.||.|++||+++++....
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 9999999765 556654 799999999876 78899998 55899999999998765554
Q ss_pred --EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 202 --YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.+ |...|.+++|+|++.+|++++ .||.|++|++..
T Consensus 343 ~~~~~----------------------h~~~v~~~~~s~dg~~l~s~~--~dg~i~iw~~~~ 380 (401)
T 4aez_A 343 VDIPA----------------------HDTRVLYSALSPDGRILSTAA--SDENLKFWRVYD 380 (401)
T ss_dssp EEEEC----------------------CSSCCCEEEECTTSSEEEEEC--TTSEEEEEECCC
T ss_pred EEecC----------------------CCCCEEEEEECCCCCEEEEEe--CCCcEEEEECCC
Confidence 333 889999999999999999999 899999999864
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-36 Score=239.51 Aligned_cols=233 Identities=18% Similarity=0.271 Sum_probs=194.4
Q ss_pred CCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC----------------
Q 042146 3 SDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP---------------- 65 (262)
Q Consensus 3 ~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~---------------- 65 (262)
.|+.|..|+ ..+....+.+|..+|.+++|+|++++|++++.|+.|++||+.............
T Consensus 128 ~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 128 ENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp TTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred CCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence 578888886 456778889999999999999999999999999999999997643211100000
Q ss_pred -CccccCCccc----cccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec
Q 042146 66 -LQKFTGHEQG----ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140 (262)
Q Consensus 66 -~~~~~~~~~~----v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 140 (262)
...+...... ....+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 287 (425)
T 1r5m_A 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287 (425)
T ss_dssp CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence 1111111111 11223899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCc---
Q 042146 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRK--- 197 (262)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~--- 197 (262)
|...|.+++|+|++ ++++++.|+.|++||++. +++++|++++.||.|++||+++++
T Consensus 288 ~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~ 366 (425)
T 1r5m_A 288 HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS 366 (425)
T ss_dssp CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence 99999999999999 999999999999999876 789999999999999999999877
Q ss_pred -----------------eeeEEeccCCceeEEEEEEecCCCeeEEcccc--ceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 198 -----------------ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD--PVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 198 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
++..+.. |.. .|.+++|+|++++|++++ .||.|++|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~ 422 (425)
T 1r5m_A 367 RSLYGNRDGILNPLPIPLYASYQS----------------------SQDNDYIFDLSWNCAGNKISVAY--SLQEGSVVA 422 (425)
T ss_dssp ------------CEECCEEEEECC----------------------TTCCCCEEEEEECTTSSEEEEEE--SSSCCEEEE
T ss_pred eeeecccccccCcccchhhhhhcC----------------------cccCCceEEEEccCCCceEEEEe--cCceEEEEe
Confidence 4444444 655 999999999999999999 899999999
Q ss_pred ec
Q 042146 259 QE 260 (262)
Q Consensus 259 ~~ 260 (262)
++
T Consensus 423 ~~ 424 (425)
T 1r5m_A 423 IP 424 (425)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=232.25 Aligned_cols=236 Identities=20% Similarity=0.307 Sum_probs=194.5
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-CCCCcccc--CCcccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-PSPLQKFT--GHEQGI 76 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~--~~~~~v 76 (262)
+.|+.|..|+ ..+.+..+.+|...|.+++|+|++++|++++.||.|++||+.......... ...+..+. .....+
T Consensus 51 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 130 (369)
T 3zwl_B 51 SKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF 130 (369)
T ss_dssp ESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEE
T ss_pred eCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEE
Confidence 3588888885 567888999999999999999999999999999999999987643221111 11111111 111111
Q ss_pred c---c-----ceeEEEEecCCCcc-----------ceecccCCc--ceEEEEEeCCCCEEEeecCCCeEEEEECCC-Cee
Q 042146 77 S---D-----LATIRLWDVPTATS-----------LKTLIGHTN--YVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKC 134 (262)
Q Consensus 77 ~---~-----~~~i~v~d~~~~~~-----------~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~ 134 (262)
. . .+.|++||+..... ...+..|.. .+.+++|+|+++++++++.||.|++||+++ .+.
T Consensus 131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY 210 (369)
T ss_dssp EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE
T ss_pred EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe
Confidence 1 1 15899999976643 333445555 899999999999999999999999999998 788
Q ss_pred eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCC---------
Q 042146 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDN--------- 186 (262)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg--------- 186 (262)
+..+..|...|.+++|+|++++|++++.|+.|++||++. ++++++++++.++
T Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 888999999999999999999999999999999999886 7899999999888
Q ss_pred -----eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 187 -----TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 187 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+++||+.+++.+..+.+ |...|.+++|+|++++|++++ .||.|++|++++
T Consensus 291 ~~~~~~i~~~d~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~~ 346 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEEEIGRVQG----------------------HFGPLNTVAISPQGTSYASGG--EDGFIRLHHFEK 346 (369)
T ss_dssp ----CEEEEEETTTCCEEEEEEC----------------------CSSCEEEEEECTTSSEEEEEE--TTSEEEEEEECH
T ss_pred CCCcceeEEEecCCCcchhheec----------------------ccCcEEEEEECCCCCEEEEEc--CCCeEEEEECcc
Confidence 899999999999988887 888999999999999999999 899999999864
No 37
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=248.88 Aligned_cols=258 Identities=13% Similarity=0.097 Sum_probs=184.0
Q ss_pred CCCCceeeecc--ccc----ceecccCcCceEEEEEccC------CCeEEEecCCCeEEEeecCCCCCCCC---CCCCCC
Q 042146 2 SSDRSLESFRP--YTL----TQTLNGHLRAVSYVKFSHD------GRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPL 66 (262)
Q Consensus 2 s~d~~i~~~~~--~~~----~~~~~~h~~~v~~~~~~~~------~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~ 66 (262)
+.|++|+.|+. .+. ...+.+|.+.|.+++|+|+ +.+||+++.||+|++||+........ ....+.
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 46888888862 222 2456778899999999997 57999999999999999976432100 011122
Q ss_pred ccccCCccccccc--------------eeEEEEecCCCc-cceecccCCcceEEE--EEeCCC-CEEEeecCCCeEEEEE
Q 042146 67 QKFTGHEQGISDL--------------ATIRLWDVPTAT-SLKTLIGHTNYVFCI--NFNPQS-NRIVSDTFNETIRIWD 128 (262)
Q Consensus 67 ~~~~~~~~~v~~~--------------~~i~v~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~vwd 128 (262)
..+.+|...+.++ +.|++||++++. +...+.+|...|.++ +|+|++ .+|++|+.|++|++||
T Consensus 260 ~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp EEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 2333333333222 299999998764 445688999999999 567787 8999999999999999
Q ss_pred CCCCeeeeeeecCCC--CeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCC
Q 042146 129 IKTGKCLKVLPAHSD--PVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDN 186 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg 186 (262)
+++++++..+.+|.. .|.+++|+|++..+++++.|++|++||++. |++++|++|+.||
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 999887777766653 588999999999999999999999999876 7899999999999
Q ss_pred eEEEEecCCCceeeEEeccC---CceeEEEEEEecCC--------------------CeeEEccccceEEEEEcCCCC--
Q 042146 187 TLRLWNYSTRKILKTYSGYT---NSKYCISSTFSVTN--------------------GKYIVSHRDPVISVASHPAKN-- 241 (262)
Q Consensus 187 ~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~p~~~-- 241 (262)
+|++||+..+ .+....... .......+.+++.. ...+.+|..+|.+++|+|++.
T Consensus 420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~ 498 (524)
T 2j04_B 420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG 498 (524)
T ss_dssp EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence 9999998643 222111000 00011122222211 123445899999999999965
Q ss_pred -eEEEeeecCCCcEEEEeeccC
Q 042146 242 -IIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 242 -~l~~~~~d~d~~i~iw~~~~~ 262 (262)
.+|+|+ .||.|+||++..|
T Consensus 499 ~~lAsg~--~~g~vrlw~l~~~ 518 (524)
T 2j04_B 499 KCYAFSN--SAGLLTLEYLSLE 518 (524)
T ss_dssp TEEEEEC--TTSEEEEEECSCC
T ss_pred HHHHhhc--cCceEEEEEcccc
Confidence 899998 8999999998754
No 38
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=236.96 Aligned_cols=231 Identities=16% Similarity=0.304 Sum_probs=185.3
Q ss_pred eeeecccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCC---------------CCCCCcccc
Q 042146 7 LESFRPYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDST---------------PPSPLQKFT 70 (262)
Q Consensus 7 i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~---------------~~~~~~~~~ 70 (262)
++.++..+....+.+|.++|++++|+| ++++|++|+.||.|++||+......... ....+..+.
T Consensus 27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE
Confidence 344456677788899999999999999 9999999999999999999864332111 000000000
Q ss_pred CC--------------------------------ccccc------------------cceeEEEEecCCCccceecccCC
Q 042146 71 GH--------------------------------EQGIS------------------DLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 71 ~~--------------------------------~~~v~------------------~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
.. ...+. ..+.|++||+.+++.+..+..|.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 00 00000 00178888888888888888999
Q ss_pred cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCe-eeeee---------------ecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGK-CLKVL---------------PAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
..|.+++|+|+++ ++++++.||.|++||++++. ++..+ ..|...|.+++|+|++++|++++.|
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 9999999999988 58899999999999998765 33333 5688899999999999999999999
Q ss_pred CeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 164 GLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 164 g~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
|.|++||++. .....+++++.++.|++||+.+++++..+.+
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------- 332 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-------------- 332 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--------------
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--------------
Confidence 9999999876 2245677788899999999999999999887
Q ss_pred CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|++++|+|++++|++++ .||.|++|+++.
T Consensus 333 --------~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~ 365 (408)
T 4a11_B 333 --------HYKTVDCCVFQSNFQELYSGS--RDCNILAWVPSL 365 (408)
T ss_dssp --------CSSCEEEEEEETTTTEEEEEE--TTSCEEEEEECC
T ss_pred --------CCCeEEEEEEcCCCCEEEEEC--CCCeEEEEeCCC
Confidence 889999999999999999999 899999999864
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-36 Score=238.83 Aligned_cols=235 Identities=18% Similarity=0.298 Sum_probs=189.0
Q ss_pred CCCCceeeecccc-----cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC----CC--CCCCCCCcccc
Q 042146 2 SSDRSLESFRPYT-----LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN----FD--STPPSPLQKFT 70 (262)
Q Consensus 2 s~d~~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~--~~~~~~~~~~~ 70 (262)
+.|++|+.|+... ++..+ .|...|.+++|+|++++|++++.||.|++|++..... .. ......+..+.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 5788999996432 33334 5899999999999999999999999999999876211 00 00111111111
Q ss_pred CCc---ccc---ccceeEEEEecCCCc------cce---ecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCee
Q 042146 71 GHE---QGI---SDLATIRLWDVPTAT------SLK---TLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKC 134 (262)
Q Consensus 71 ~~~---~~v---~~~~~i~v~d~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 134 (262)
... ..+ ...+.|++||+.+++ ... ....|...|.+++|+|+ +.++++++.||.|++||+++++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 111 111 112389999998876 333 34678899999999998 78999999999999999999999
Q ss_pred eeeeecC------CCCeeeEEEccCC-CEEEEEeCCC---eEEEEeCCC----------------------C-CccEEEE
Q 042146 135 LKVLPAH------SDPVTAIDFNRDG-TMIVTSSYDG---LYRILDAST----------------------P-NGKFILV 181 (262)
Q Consensus 135 ~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~----------------------~-~~~~l~~ 181 (262)
+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++. | ++++|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 8888776 7899999999987 6899999998 999999865 5 7899999
Q ss_pred EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146 182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 182 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~ 260 (262)
++.||.|++||+++++++..+.. |...|.+++|+|++ .+|++++ .|+.|++|+++
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~~l~s~~--~d~~i~iw~~~ 336 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPA----------------------RGNWCFKTKFAPEAPDLFACAS--FDNKIEVQTLQ 336 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEEC----------------------SSSCCCCEEECTTCTTEEEECC--SSSEEEEEESC
T ss_pred EeCCCCEEEeeCCCCccceeecC----------------------CCCceEEEEECCCCCCEEEEEe--cCCcEEEEEcc
Confidence 99999999999999999998887 88899999999999 8999999 89999999986
Q ss_pred c
Q 042146 261 K 261 (262)
Q Consensus 261 ~ 261 (262)
.
T Consensus 337 ~ 337 (416)
T 2pm9_A 337 N 337 (416)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-36 Score=243.76 Aligned_cols=246 Identities=16% Similarity=0.193 Sum_probs=177.2
Q ss_pred ccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccCC--c-ccc---ccce
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTGH--E-QGI---SDLA 80 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~--~-~~v---~~~~ 80 (262)
.+.+.....+|...|+|++|+| ++++||+|+.||.|+|||+........ .....+..+..+ . ..+ ...+
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 4455666778999999999999 567999999999999999865432110 111122222211 1 111 1233
Q ss_pred eEEEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EE
Q 042146 81 TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 157 (262)
.|++||++++....... .+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 89999997654433222 334568899999999999999999999999986 456778889999999999999876 78
Q ss_pred EEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce----e
Q 042146 158 VTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK----Y 210 (262)
Q Consensus 158 ~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~ 210 (262)
++++.|+.|++||++. |++.+|++++.||.|++||+++++....+..+.... .
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 8999999999999875 789999999999999999999988776665443210 0
Q ss_pred -----------EEEEE--------------------EecCCCeeE----EccccceEEE-EEcCCCCeEEEeeecCCCcE
Q 042146 211 -----------CISST--------------------FSVTNGKYI----VSHRDPVISV-ASHPAKNIIASGALDNDRTM 254 (262)
Q Consensus 211 -----------~~~~~--------------------~~~~~~~~~----~~~~~~v~~~-~~~p~~~~l~~~~~d~d~~i 254 (262)
.+... |....+..+ .+|...|.++ +|+|++.+|++|+ |+.|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~---d~~i 423 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM---GYHI 423 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC---SSEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc---CCcE
Confidence 01111 111122221 1366778887 6999999999875 6799
Q ss_pred EEEeecc
Q 042146 255 KIWTQEK 261 (262)
Q Consensus 255 ~iw~~~~ 261 (262)
+||++++
T Consensus 424 ~iW~~~~ 430 (435)
T 4e54_B 424 LIWSQQE 430 (435)
T ss_dssp EECCCC-
T ss_pred EEEECCc
Confidence 9999864
No 41
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-34 Score=241.78 Aligned_cols=244 Identities=30% Similarity=0.537 Sum_probs=200.8
Q ss_pred CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---
Q 042146 2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--- 77 (262)
Q Consensus 2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 77 (262)
+.|+++..|+ ..+.+..+.+|..+|.+++|+|++++|++++.|+.|++|+..... ...+.+|...+.
T Consensus 240 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~---------~~~~~~h~~~v~~~~ 310 (577)
T 2ymu_A 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---------LQTLTGHSSSVWGVA 310 (577)
T ss_dssp ETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---------EEEECCCSSCEEEEE
T ss_pred eCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE---------EEEEecCCCCeEEEE
Confidence 3578888886 456788899999999999999999999999999999999865421 112222222222
Q ss_pred ------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146 78 ------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV 145 (262)
Q Consensus 78 ------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 145 (262)
..+.|++||.. ++.+..+.+|...+.+++|+|+++++++++.||.|++||. +++.+..+..|...|
T Consensus 311 ~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 311 FSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 388 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence 12379999975 4556778889999999999999999999999999999995 577888889999999
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 206 (262)
.+++|+|++++|++++.|+.|++||... |++++|++++.|+.|++||. +++.+..+.+|.
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~ 467 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS 467 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence 9999999999999999999999999754 78999999999999999996 578888888888
Q ss_pred CceeEEEEEEecCCCee---------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 207 NSKYCISSTFSVTNGKY---------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 207 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+.++.+ ++....+ +.+|...|++++|+|++++|++++ .||.|++||.+.
T Consensus 468 ~~v~~~~~--spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg~v~lwd~~~ 539 (577)
T 2ymu_A 468 SSVRGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNG 539 (577)
T ss_dssp SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTS
T ss_pred CCEEEEEE--cCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE--CcCEEEEEeCCC
Confidence 77766543 3222222 233889999999999999999999 899999999753
No 42
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=227.65 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=182.7
Q ss_pred CCCceeeec--ccccceec--ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 3 SDRSLESFR--PYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
.|++|+.|+ +.+.++.+ .+|...|++++|+|++++|++|+.||+|++|+++..+. ...+.+|...+..
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~--------~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--------LRNMTSHSARVGS 114 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSSCEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--------EEEecCccceEEE
Confidence 488888886 45555555 57888899999999999999999999999999876432 2223333332221
Q ss_pred -------------ceeEEEEecCCCc-cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee----eeeeec
Q 042146 79 -------------LATIRLWDVPTAT-SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC----LKVLPA 140 (262)
Q Consensus 79 -------------~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~ 140 (262)
...+++|+..... .+..+.+|...+..+.++++++++++++.||.|++||+++++. ......
T Consensus 115 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 2267888877654 4566788999999999999999999999999999999987653 344556
Q ss_pred CCCCeeeEEEccCCCE---EEEEeCCCeEEEEeCCC-------------------CCccEEEEE--cCCCeEEEEecCCC
Q 042146 141 HSDPVTAIDFNRDGTM---IVTSSYDGLYRILDAST-------------------PNGKFILVG--TLDNTLRLWNYSTR 196 (262)
Q Consensus 141 ~~~~v~~~~~~~~~~~---l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~--~~dg~i~i~d~~~~ 196 (262)
+.+.|.+++++|++.. +++++.++.|++||.+. ++++.++++ +.|+.|++||++++
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 7889999999996653 34567889999999887 566666554 48999999999999
Q ss_pred ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+++..+.+ |.+.|++++|+|++++|++|| .||+|+|||+.+
T Consensus 275 ~~~~~l~g----------------------H~~~V~~l~~spdg~~l~S~s--~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 AKVAELKG----------------------HTSRVLSLTMSPDGATVASAA--ADETLRLWRCFE 315 (318)
T ss_dssp CEEEEECC----------------------CSSCEEEEEECTTSSCEEEEE--TTTEEEEECCSC
T ss_pred cEEEEEcC----------------------CCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Confidence 99999987 899999999999999999999 899999999854
No 43
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-36 Score=243.91 Aligned_cols=254 Identities=14% Similarity=0.222 Sum_probs=191.6
Q ss_pred CCCCceeeecccc--------cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC---CCCCCCCCCCCCcccc
Q 042146 2 SSDRSLESFRPYT--------LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS---ISNFDSTPPSPLQKFT 70 (262)
Q Consensus 2 s~d~~i~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~---~~~~~~~~~~~~~~~~ 70 (262)
+.|++|+.|+... ....+ +|.++|.+++|+|++++|++++.||+|++||++. ...........+..+.
T Consensus 83 s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 161 (437)
T 3gre_A 83 SDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN 161 (437)
T ss_dssp ETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE
Confidence 4689999997433 23333 5999999999999999999999999999999852 1111000000111111
Q ss_pred CC-----------------ccc----cccceeEEEEecCCCccceeccc--CCcceEEEEEeCCCCEEEeecCCCeEEEE
Q 042146 71 GH-----------------EQG----ISDLATIRLWDVPTATSLKTLIG--HTNYVFCINFNPQSNRIVSDTFNETIRIW 127 (262)
Q Consensus 71 ~~-----------------~~~----v~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 127 (262)
.+ ... ....+.|++||+++++.+..+.. |...|++++|+|++++|++|+.||.|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 00 010 11223899999999999998887 88999999999999999999999999999
Q ss_pred ECCCCeeeeeee-cCCCCeeeEEEcc----CCCEEEEEeCCCeEEEEeCCC--------------------C--------
Q 042146 128 DIKTGKCLKVLP-AHSDPVTAIDFNR----DGTMIVTSSYDGLYRILDAST--------------------P-------- 174 (262)
Q Consensus 128 d~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~d~~~--------------------~-------- 174 (262)
|+++++++..+. .|..+|.+++|+| ++.+|++++.||.|++||++. +
T Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 242 DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred EcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 999999988876 6788999996654 677999999999999999975 1
Q ss_pred -----------------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE-EEecCCCeeEEc----------
Q 042146 175 -----------------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS-TFSVTNGKYIVS---------- 226 (262)
Q Consensus 175 -----------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------- 226 (262)
++++|++|+.||.|++||+++++....+.++......... .+.......+..
T Consensus 322 ~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
T 3gre_A 322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD 401 (437)
T ss_dssp CCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred eecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence 1378999999999999999999999999876543333322 222222222222
Q ss_pred ----cccceEEEEEcCC--CCeEEEeeecCCCcEEEEe
Q 042146 227 ----HRDPVISVASHPA--KNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 227 ----~~~~v~~~~~~p~--~~~l~~~~~d~d~~i~iw~ 258 (262)
|...|++++|+++ +.+|++|+ .||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~--~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACD--NSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEE--TTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEc--CCceEEEeC
Confidence 8999999999998 78999999 999999995
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-35 Score=234.82 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=152.9
Q ss_pred cCceEEEEEccCCCeEEEecCC-------CeEEEeecCCCCCCCCCCCC--CCccccCCccccc----------------
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAE-------KTLLTYSLSSISNFDSTPPS--PLQKFTGHEQGIS---------------- 77 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~v~---------------- 77 (262)
..||.|++|+||+++|++|+.+ +.|++|+++........... ....+..+...+.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 4689999999999999998754 36999998653221100000 0001111111111
Q ss_pred --------cceeEEEEecCCCcccee---------cccCCcceEEEEEeCCCCEEE--eecCCCeEEEEECCCCeeeeee
Q 042146 78 --------DLATIRLWDVPTATSLKT---------LIGHTNYVFCINFNPQSNRIV--SDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 78 --------~~~~i~v~d~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
....+++|++........ ...+...+.+++|+|||++++ +++.|++|++||+++++++..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 122789999876543211 123445689999999999976 4557899999999999998888
Q ss_pred ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Q 042146 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------------------------- 173 (262)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------------------------- 173 (262)
. |...|.+++|+|+|+++++++.++.+.+|....
T Consensus 174 ~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 174 E-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp E-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred C-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 5 778899999999999999988665544443322
Q ss_pred --------------------------CCccEEEEEcCCCeEEEEecCCCceeeEE-eccCCceeEEEEEEecCCCeeEEc
Q 042146 174 --------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY-SGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 174 --------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
|++++|++|+.|+.|+|||+++++++..+ .+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g---------------------- 310 (365)
T 4h5i_A 253 KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA---------------------- 310 (365)
T ss_dssp ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS----------------------
T ss_pred ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc----------------------
Confidence 56667777777777777777766666654 33
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|..+|++++|+|++++||++| .|++|+||++++
T Consensus 311 H~~~V~~v~fSpdg~~laS~S--~D~tvrvw~ip~ 343 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVS--AANTIHIIKLPL 343 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEE--TTSEEEEEECCT
T ss_pred ccCCEEEEEECCCCCEEEEEe--CCCeEEEEEcCC
Confidence 899999999999999999999 899999999864
No 45
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-35 Score=236.05 Aligned_cols=235 Identities=17% Similarity=0.228 Sum_probs=182.4
Q ss_pred CCCCceeeeccc--ccceec--ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCC----CCCCcccc--
Q 042146 2 SSDRSLESFRPY--TLTQTL--NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQKFT-- 70 (262)
Q Consensus 2 s~d~~i~~~~~~--~~~~~~--~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~~~~-- 70 (262)
+.|++|..|+.. +....+ .+|...|.+++|+| ++++|++++.|+.|++||+.......... ...+..+.
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE
T ss_pred cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC
Confidence 357888888643 444444 37999999999999 78999999999999999987522110000 01111111
Q ss_pred CCcccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCC----CeeeeeeecCC
Q 042146 71 GHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKT----GKCLKVLPAHS 142 (262)
Q Consensus 71 ~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~ 142 (262)
.....+ ...+.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+++ +.++..+ .|.
T Consensus 173 ~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~ 250 (383)
T 3ei3_B 173 VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE 250 (383)
T ss_dssp TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS
T ss_pred CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC
Confidence 111111 12238999999 5778888999999999999999998 899999999999999997 5666666 699
Q ss_pred CCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC--------------------------CCccEEE---------EEcCCC
Q 042146 143 DPVTAIDFNR-DGTMIVTSSYDGLYRILDAST--------------------------PNGKFIL---------VGTLDN 186 (262)
Q Consensus 143 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~---------~~~~dg 186 (262)
..|.+++|+| ++++|++++.|+.|++||++. |++..++ +|+.||
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~ 330 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR 330 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCC
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCC
Confidence 9999999999 999999999999999999875 1233333 446899
Q ss_pred eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 187 TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 187 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.|++||+.+++++..+.++. |...+..++|+|++++|++++ |+.|++|++++
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~--------------------~~~~~~~~~~s~~g~~l~s~s---d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPN--------------------AAGIISLNKFSPTGDVLASGM---GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBTT--------------------BCSCCCEEEECTTSSEEEEEE---TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCCC--------------------CCceEEEEEEecCccEEEEec---CCcEEEEecCC
Confidence 99999999999999887643 566788889999999999996 69999999975
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-34 Score=226.37 Aligned_cols=217 Identities=18% Similarity=0.297 Sum_probs=179.7
Q ss_pred cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-------CCCCCccccCC--cccc---ccceeEEEEe
Q 042146 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-------PPSPLQKFTGH--EQGI---SDLATIRLWD 86 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~~~~~--~~~v---~~~~~i~v~d 86 (262)
..+|..+|++++|+|++++|++++ ||.|++|++......... ....+..+... ...+ ...+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999999 999999999764321111 11111111111 1111 1123899999
Q ss_pred cCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 87 VPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 87 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
+.+++ ....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...+.+++|+|++++|++++.||
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 99877 5567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 165 LYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 165 ~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
.|++||++. |+++++++++.++.|++||+++++.. .+..
T Consensus 206 ~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~--------------------- 263 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL--------------------- 263 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC---------------------
T ss_pred cEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC---------------------
Confidence 999999886 78999999999999999999987654 3333
Q ss_pred ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++++|++++ .||.|++|+++.
T Consensus 264 -~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~~~~~ 296 (337)
T 1gxr_A 264 -HESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPY 296 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred -CccceeEEEECCCCCEEEEec--CCCcEEEEECCC
Confidence 888999999999999999999 899999999864
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=223.11 Aligned_cols=224 Identities=23% Similarity=0.405 Sum_probs=188.2
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
+.||.+..|+ ..+....+..|...|.+++|+|++++|++++.||.|++|++..... ......+..|...+..+
T Consensus 36 ~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~~~~~~i~~~ 110 (313)
T 3odt_A 36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-----EDPLYTLIGHQGNVCSL 110 (313)
T ss_dssp ETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-----SCC-CEECCCSSCEEEE
T ss_pred EcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-----CCcccchhhcccCEEEE
Confidence 4688888886 5567788889999999999999999999999999999999865321 22333344444443332
Q ss_pred -------------eeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCC
Q 042146 80 -------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDP 144 (262)
Q Consensus 80 -------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~ 144 (262)
+.|++|| .++....+..|...+.+++++| +++++++++.||.|++|| ..+....+.. |...
T Consensus 111 ~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~ 186 (313)
T 3odt_A 111 SFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDV 186 (313)
T ss_dssp EEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSC
T ss_pred EecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCccc
Confidence 2899999 6777788888999999999998 999999999999999999 4555666666 8899
Q ss_pred eeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 145 VTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
+.+++|+|++. +++++.||.|++||++. +++ .|++++.||.|++||+++++++..+..
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~ 264 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL 264 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec
Confidence 99999999988 99999999999999986 566 689999999999999999999988887
Q ss_pred cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|+++ +++++ .||.|++|++++
T Consensus 265 ----------------------~~~~i~~~~~~~~~~-~~~~~--~dg~i~iw~~~~ 296 (313)
T 3odt_A 265 ----------------------PAISIWSVDCMSNGD-IIVGS--SDNLVRIFSQEK 296 (313)
T ss_dssp ----------------------SSSCEEEEEECTTSC-EEEEE--TTSCEEEEESCG
T ss_pred ----------------------cCceEEEEEEccCCC-EEEEe--CCCcEEEEeCCC
Confidence 778999999999998 55677 899999999874
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-35 Score=233.82 Aligned_cols=227 Identities=29% Similarity=0.534 Sum_probs=172.2
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC--------------------CCcc--ccCCcccc--
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS--------------------PLQK--FTGHEQGI-- 76 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--------------------~~~~--~~~~~~~v-- 76 (262)
+|.+.|.+++|+|+|++||+|+ ++++++|++............ .+.. +......+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 789999998764321100000 0111 11111111
Q ss_pred -ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CC
Q 042146 77 -SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DG 154 (262)
Q Consensus 77 -~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~ 154 (262)
...+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+. +...+.+++|+| ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 122389999999999999999999999999999999999999999999999999998887775 567899999999 89
Q ss_pred CEEEEEeCCCeEEEEeCCC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146 155 TMIVTSSYDGLYRILDAST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 207 (262)
++|++++.|+.|++||++. +++++|++|+.|+.|++||+++............
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 9999999999999999753 6889999999999999999987543322211000
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
. .+ ...+.+|...|.+++|+|++.+|++++ .|+.|++||+..
T Consensus 300 ~-~~---------~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~iwd~~~ 341 (393)
T 1erj_A 300 G-TC---------EVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKS 341 (393)
T ss_dssp --CE---------EEEEECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTT
T ss_pred C-cc---------eEEEecccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCC
Confidence 0 00 111234899999999999999999999 899999999864
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-35 Score=234.67 Aligned_cols=250 Identities=14% Similarity=0.227 Sum_probs=195.9
Q ss_pred CCCCceeeecc--cc------cceecccCcCceEEEEEccC----C---CeEEEecCCCeEEEeecCCCCC-----CCCC
Q 042146 2 SSDRSLESFRP--YT------LTQTLNGHLRAVSYVKFSHD----G---RLLTSSSAEKTLLTYSLSSISN-----FDST 61 (262)
Q Consensus 2 s~d~~i~~~~~--~~------~~~~~~~h~~~v~~~~~~~~----~---~~l~s~~~d~~i~iw~~~~~~~-----~~~~ 61 (262)
+.|++|..|+. .+ ....+.+|..+|.+++|+|+ + ++|++++.||.|++|++..... ....
T Consensus 33 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 112 (397)
T 1sq9_A 33 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 112 (397)
T ss_dssp ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred cCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence 46889888863 33 67888899999999999999 9 9999999999999999876543 1111
Q ss_pred C-C------CCCccccCC------ccc-cc---cceeEEEEecCC------Cccce-----ec-------ccCCcceEEE
Q 042146 62 P-P------SPLQKFTGH------EQG-IS---DLATIRLWDVPT------ATSLK-----TL-------IGHTNYVFCI 106 (262)
Q Consensus 62 ~-~------~~~~~~~~~------~~~-v~---~~~~i~v~d~~~------~~~~~-----~~-------~~~~~~v~~~ 106 (262)
. . ..+..+... ... +. ..+.|++||+.+ ++.+. .+ ..|...|.++
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEE
Confidence 1 1 222222212 111 21 234899999998 77766 66 4488999999
Q ss_pred EEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec---C---CCCeeeEEEccCCCEEEEEeCC---CeEEEEeCCC----
Q 042146 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA---H---SDPVTAIDFNRDGTMIVTSSYD---GLYRILDAST---- 173 (262)
Q Consensus 107 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~---- 173 (262)
+|+|++ ++++++.||.|++||+++++.+..+.. | ..+|.+++|+|++++|++++.| +.|++||++.
T Consensus 193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 193 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 999999 999999999999999999999999988 8 9999999999999999999999 9999999753
Q ss_pred -----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe------ccCCceeEEEEEEec
Q 042146 174 -----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS------GYTNSKYCISSTFSV 218 (262)
Q Consensus 174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~ 218 (262)
+++++|++++.||.|++||+++++++..+. .+..... .
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~ 344 (397)
T 1sq9_A 272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL-------A 344 (397)
T ss_dssp EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC-------C
T ss_pred ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh-------c
Confidence 678899999999999999999999999888 4210000 0
Q ss_pred CCCeeEEccccceEEEEEcCCC----------CeEEEeeecCCCcEEEEeecc
Q 042146 219 TNGKYIVSHRDPVISVASHPAK----------NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 ~~~~~~~~~~~~v~~~~~~p~~----------~~l~~~~~d~d~~i~iw~~~~ 261 (262)
........|..+|.+++|+|++ ++|++++ .||.|++|+++.
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~ 395 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC--LDRSIRWFREAG 395 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE--TTTEEEEEEEEC
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEec--CCCcEEEEEcCC
Confidence 0000001138899999999998 7999999 899999999875
No 50
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.7e-35 Score=253.23 Aligned_cols=217 Identities=19% Similarity=0.383 Sum_probs=191.3
Q ss_pred cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc--------------
Q 042146 13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------- 78 (262)
Q Consensus 13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------- 78 (262)
+++.+.+.+|.+.|++++|+|++++|++++.||.|++||+..... ...+..|...+..
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--------VRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce--------EEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 456788899999999999999999999999999999999865322 2223333333322
Q ss_pred -ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCC
Q 042146 79 -LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGT 155 (262)
Q Consensus 79 -~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~ 155 (262)
.+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+..|..+|.+++|+| ++.
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 238999999999999999999999999999999999999999999999999987 67778888999999999999 889
Q ss_pred EEEEEeCCCeEEEEeCCC---------------------C--CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146 156 MIVTSSYDGLYRILDAST---------------------P--NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~---------------------~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
.|++++.||.|++||+.. | +++++++++.||.|++||+++++++..+..
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------- 226 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-------- 226 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC--------
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC--------
Confidence 999999999999999865 4 889999999999999999999999888877
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++++|++++ .||.|++|++..
T Consensus 227 --------------~~~~v~~~~~~~~~~~l~~~~--~dg~v~vwd~~~ 259 (814)
T 3mkq_A 227 --------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIWNSST 259 (814)
T ss_dssp --------------CSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTT
T ss_pred --------------CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCC
Confidence 888999999999999999999 899999999864
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.6e-35 Score=248.82 Aligned_cols=194 Identities=24% Similarity=0.467 Sum_probs=171.4
Q ss_pred ccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
.....+++|.+.|++++|+|++ ++|++|+.|++|++|++..... ..+..
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~------------------------------~~~~~ 422 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK------------------------------AYGVA 422 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT------------------------------CSCEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc------------------------------ccccc
Confidence 3455788999999999999874 7999999999999998754210 11233
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
...+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||..
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C-----------------------CCc--cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 173 T-----------------------PNG--KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 173 ~-----------------------~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
. +++ ..+++|+.|+.|++||++++++...+.+ |
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------------------h 560 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------------------H 560 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC----------------------C
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------------------C
Confidence 3 333 5799999999999999999998888877 8
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...|++++|+|++++|++++ .||.|++||+.+
T Consensus 561 ~~~v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 561 TGYVSTVAVSPDGSLCASGG--KDGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSBCEEEETTT
T ss_pred CCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC
Confidence 89999999999999999999 899999999864
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=239.76 Aligned_cols=258 Identities=13% Similarity=0.238 Sum_probs=191.1
Q ss_pred CCCceeeeccc------ccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCC------CCCC-----CCC
Q 042146 3 SDRSLESFRPY------TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISN------FDST-----PPS 64 (262)
Q Consensus 3 ~d~~i~~~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~------~~~~-----~~~ 64 (262)
.|+.+..|+.. +....+.+|..+|.+++|+|+ +++|++++.|+.|++||+..... .... ...
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 57888888743 378888999999999999998 89999999999999999987541 1000 111
Q ss_pred CCccccCCcc--cc----ccceeEEEEecCCCccceecccC------CcceEEEEEeCCC-CEEEeecCCC---eEEEEE
Q 042146 65 PLQKFTGHEQ--GI----SDLATIRLWDVPTATSLKTLIGH------TNYVFCINFNPQS-NRIVSDTFNE---TIRIWD 128 (262)
Q Consensus 65 ~~~~~~~~~~--~v----~~~~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~vwd 128 (262)
.+..+..... .. ...+.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 1111111111 11 12338999999999888887766 7899999999987 6899999998 999999
Q ss_pred CCCC-eeeeeee-cCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC--------------------CCc-cEEEEEcC
Q 042146 129 IKTG-KCLKVLP-AHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST--------------------PNG-KFILVGTL 184 (262)
Q Consensus 129 ~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--------------------~~~-~~l~~~~~ 184 (262)
++++ +++..+. +|...|.+++|+| ++++|++++.||.|++||++. |++ .+|++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 9986 6677777 8999999999999 999999999999999999876 677 89999999
Q ss_pred CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCC-------------eeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG-------------KYIVSHRDPVISVASHPAKNIIASGALDND 251 (262)
Q Consensus 185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d 251 (262)
||.|++||+.++...................+....+ .....|..++.+++|+|+|++|++++ .|
T Consensus 327 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~--~d 404 (416)
T 2pm9_A 327 DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITP--DG 404 (416)
T ss_dssp SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCT--TS
T ss_pred CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeC--CC
Confidence 9999999998876543321100000000000000000 00011667888999999999999999 89
Q ss_pred CcEEEEeeccC
Q 042146 252 RTMKIWTQEKE 262 (262)
Q Consensus 252 ~~i~iw~~~~~ 262 (262)
+.|+||++..+
T Consensus 405 ~~v~~w~~~~~ 415 (416)
T 2pm9_A 405 KGVSITNPKIS 415 (416)
T ss_dssp SCBCCBCCCCC
T ss_pred CeEEEEEeccC
Confidence 99999998754
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-35 Score=233.59 Aligned_cols=234 Identities=14% Similarity=0.282 Sum_probs=180.3
Q ss_pred CCceeeec--ccccceeccc-----CcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCcccc
Q 042146 4 DRSLESFR--PYTLTQTLNG-----HLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQKFT 70 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~ 70 (262)
++.+..|+ ..+.+..+.. |...|.+++|+|+ +++|++|+.||.|++||+......... ....+..+.
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 122 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEE
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEE
Confidence 55666665 3444455543 5678999999999 679999999999999998754321111 111111111
Q ss_pred CCc---ccc---ccceeEEEEecCCCccceec---ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-
Q 042146 71 GHE---QGI---SDLATIRLWDVPTATSLKTL---IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA- 140 (262)
Q Consensus 71 ~~~---~~v---~~~~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 140 (262)
.+. ..+ ...+.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 202 (366)
T 3k26_A 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202 (366)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH
T ss_pred ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee
Confidence 111 111 11238999999999888877 68999999999999999999999999999999998765544433
Q ss_pred ---------------------------CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------
Q 042146 141 ---------------------------HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------- 173 (262)
Q Consensus 141 ---------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------- 173 (262)
|...|.+++|+ +++|++++.|+.|++||++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 280 (366)
T 3k26_A 203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280 (366)
T ss_dssp HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred EEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecc
Confidence 89999999998 77999999999999999754
Q ss_pred --------------CC--ccEEEEEcCCCeEEEEecCCCceee----EEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146 174 --------------PN--GKFILVGTLDNTLRLWNYSTRKILK----TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233 (262)
Q Consensus 174 --------------~~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 233 (262)
++ +++|++|+.||.|++||++++++.. .+..+. |...|++
T Consensus 281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------~~~~v~~ 340 (366)
T 3k26_A 281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK--------------------CGAAIRQ 340 (366)
T ss_dssp EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT--------------------CCSCEEE
T ss_pred ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc--------------------cCCceEE
Confidence 34 8999999999999999999876443 454421 3789999
Q ss_pred EEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 234 VASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++|+|++++|++++ .||.|++||+.+
T Consensus 341 ~~~s~~~~~l~s~~--~dg~i~iwd~~~ 366 (366)
T 3k26_A 341 TSFSRDSSILIAVC--DDASIWRWDRLR 366 (366)
T ss_dssp EEECTTSSEEEEEE--TTSEEEEEEC--
T ss_pred EEeCCCCCeEEEEe--CCCEEEEEEecC
Confidence 99999999999999 899999999863
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-35 Score=236.58 Aligned_cols=215 Identities=15% Similarity=0.234 Sum_probs=180.9
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc---ccCCcccc---ccceeEEEEecCCCccceecc
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK---FTGHEQGI---SDLATIRLWDVPTATSLKTLI 97 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~v---~~~~~i~v~d~~~~~~~~~~~ 97 (262)
..+++++|+|++++|++++.|+.|++||+................ +......+ ...+.|++||+.+++....+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 335589999999999999999999999987754433222221111 11111111 123389999999998888888
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---- 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---- 173 (262)
+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146 174 ----------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213 (262)
Q Consensus 174 ----------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 213 (262)
+++++|++|+.||.|++||+++++.+..+...
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------- 288 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-------- 288 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--------
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--------
Confidence 46789999999999999999998877776431
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++. +|++++ .||.|++||+.+
T Consensus 289 -------------~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~ 322 (420)
T 3vl1_A 289 -------------FTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRS 322 (420)
T ss_dssp -------------TSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTC
T ss_pred -------------cCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCC
Confidence 788999999999999 999999 899999999864
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6e-35 Score=234.59 Aligned_cols=238 Identities=17% Similarity=0.286 Sum_probs=187.4
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
+.|+.+..|+ ..+....+.+|.++|++++|+|++++|++|+.|+.|++||+..... ...+.+|...+..+
T Consensus 116 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------PRTLIGHRATVTDI 187 (420)
T ss_dssp ETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------CEEEECCSSCEEEE
T ss_pred ECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------ceEEcCCCCcEEEE
Confidence 3578888886 4567777889999999999999999999999999999999875432 23334444443332
Q ss_pred e---------------eEEEEecCCCccceeccc---CCcceEEEE---------------------EeCCCCEEEeecC
Q 042146 80 A---------------TIRLWDVPTATSLKTLIG---HTNYVFCIN---------------------FNPQSNRIVSDTF 120 (262)
Q Consensus 80 ~---------------~i~v~d~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~l~~~~~ 120 (262)
. .|++||+.+++.+..+.. +...+.+++ |+|+++++++|+.
T Consensus 188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence 2 799999999988887764 344555555 4688999999999
Q ss_pred CCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCC-EEEEEeCCCeEEEEeCCC---------------------CCcc
Q 042146 121 NETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGT-MIVTSSYDGLYRILDAST---------------------PNGK 177 (262)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~---------------------~~~~ 177 (262)
||.|++||+++++.+..+. .|...|.+++|+|++. +|++++.||.|++||++. ++++
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 347 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGA 347 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTE
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCC
Confidence 9999999999988777664 4788999999999998 999999999999999976 5678
Q ss_pred EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC---eEEEeeecCCCcE
Q 042146 178 FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN---IIASGALDNDRTM 254 (262)
Q Consensus 178 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~~~~~d~d~~i 254 (262)
+|++++.||.|++|++........+... .....+.+|...|.+++|+|++. .+++++ .+|.+
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g--~~g~~ 412 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEF-------------ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG--KNNFC 412 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECT-------------TSCEEECCSSCCCCEEEEECCSSSSCEEEEEE--TTTEE
T ss_pred EEEEecCCccEEEEeccCCCCCccceec-------------cCccEEccCCcceEEEEEccCCCCcceEEEEc--CCceE
Confidence 9999999999999999875433222211 11222334889999999999999 666666 78999
Q ss_pred EEEeeccC
Q 042146 255 KIWTQEKE 262 (262)
Q Consensus 255 ~iw~~~~~ 262 (262)
.+|+++++
T Consensus 413 ~~~~~~~~ 420 (420)
T 3vl1_A 413 ALYNLSNP 420 (420)
T ss_dssp EEEESCC-
T ss_pred EEEeccCC
Confidence 99998753
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=229.33 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=185.6
Q ss_pred CCCCceeeecc--cc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC----CCCCCCCccccC--
Q 042146 2 SSDRSLESFRP--YT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD----STPPSPLQKFTG-- 71 (262)
Q Consensus 2 s~d~~i~~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~-- 71 (262)
+.|+.|..|+. .+ ....+.+|...|.+++|+|++++|++++.||.|++||++...... ......+..+..
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 106 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC
Confidence 36888888863 33 788899999999999999999999999999999999986643110 111111111111
Q ss_pred Ccccc---ccceeEEEEecCCCcc----ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC--------------
Q 042146 72 HEQGI---SDLATIRLWDVPTATS----LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK-------------- 130 (262)
Q Consensus 72 ~~~~v---~~~~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-------------- 130 (262)
....+ ...+.|++||+..+.. ......|...|.+++|+|+++++++++.||.|++||++
T Consensus 107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence 11111 1123799999988763 23336788999999999999999999999999999953
Q ss_pred ----CCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCC
Q 042146 131 ----TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDN 186 (262)
Q Consensus 131 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg 186 (262)
.++.+..+..|...|.+++|+|++++|++++.|+.|++||++. +++.++++| .|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCC
Confidence 6778888889999999999999999999999999999999875 678888877 899
Q ss_pred eEEEEecCC--Cc--eeeEEeccCCceeEEEE---EE---e--------cCC-CeeEEccccceEEEEEc-CCC---CeE
Q 042146 187 TLRLWNYST--RK--ILKTYSGYTNSKYCISS---TF---S--------VTN-GKYIVSHRDPVISVASH-PAK---NII 243 (262)
Q Consensus 187 ~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~---~~---~--------~~~-~~~~~~~~~~v~~~~~~-p~~---~~l 243 (262)
.|++|+++. ++ ++..+..+......... .+ . +.. ..+..+|..+|++++|+ +++ .+|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l 345 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 345 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence 999999987 53 22222111000000000 00 0 000 11112599999999976 666 999
Q ss_pred EEeeecCCCcEEEEeecc
Q 042146 244 ASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 244 ~~~~~d~d~~i~iw~~~~ 261 (262)
++++ .||.|++|+++.
T Consensus 346 ~s~~--~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 346 CTTG--MDGGMSIWDVRS 361 (372)
T ss_dssp EEEE--TTSEEEEEEHHH
T ss_pred EEec--CCCceEEEEecC
Confidence 9999 899999999853
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=222.88 Aligned_cols=245 Identities=16% Similarity=0.259 Sum_probs=181.6
Q ss_pred CCceeeecc--ccccee-cccCcCceEEEEEccC---CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 4 DRSLESFRP--YTLTQT-LNGHLRAVSYVKFSHD---GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 4 d~~i~~~~~--~~~~~~-~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|+++..|+. .+.... ..+|..+|.+++|+|+ +++|++|+.||.|++||+..... ....+.+|...+.
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~ 115 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-------PVYSVKGHKEIIN 115 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-------CSEEECCCSSCEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-------cEEEEEecccceE
Confidence 888888863 333222 3379999999999998 69999999999999999876431 2222333333322
Q ss_pred c---------------------ceeEEEEecCCCc-cceecccCCc----ceEEEE----EeCCCCEEEeecCCCeEEEE
Q 042146 78 D---------------------LATIRLWDVPTAT-SLKTLIGHTN----YVFCIN----FNPQSNRIVSDTFNETIRIW 127 (262)
Q Consensus 78 ~---------------------~~~i~v~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~dg~i~vw 127 (262)
. .+.|++||+.+++ .+..+..|.. .+.+++ |+|+++++++++.||.|++|
T Consensus 116 ~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp EEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred EEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 2 2289999999887 6666665544 799998 67899999999999999999
Q ss_pred ECCCCeeeeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCCC-------------------------CCcc-E
Q 042146 128 DIKTGKCLKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDAST-------------------------PNGK-F 178 (262)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~-~ 178 (262)
|+++++.... ..|...|.+++|+| ++.+|++++.||.|++||++. |+++ +
T Consensus 196 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 196 DLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp ETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 9999887555 56889999999999 899999999999999999764 6777 8
Q ss_pred EEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE-EeeecCCCcEEEE
Q 042146 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA-SGALDNDRTMKIW 257 (262)
Q Consensus 179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~d~~i~iw 257 (262)
|++++.||.|++||++++................ -.......+.+|..+|.+++|+|++++|+ +++ .||.|++|
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~--~d~~i~iw 349 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA---GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS--FDQTVRVL 349 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC---CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE--TTSEEEEE
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccc---cccceeeccccCCCCeeEEEEcCCCCeEEEEec--CCCcEEEE
Confidence 9999999999999998765432221111000000 00000001223889999999999999998 788 89999999
Q ss_pred eecc
Q 042146 258 TQEK 261 (262)
Q Consensus 258 ~~~~ 261 (262)
++.+
T Consensus 350 ~~~~ 353 (357)
T 3i2n_A 350 IVTK 353 (357)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9864
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.4e-34 Score=226.91 Aligned_cols=210 Identities=21% Similarity=0.360 Sum_probs=175.2
Q ss_pred CCCCceeeeccc------ccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 2 SSDRSLESFRPY------TLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~~~------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
+.||.|..|+.. .....+.+|.++|++++|+| ++++|++|+.||+|++||+.......
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--------------- 118 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--------------- 118 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------
Confidence 458888888632 34567889999999999999 99999999999999999876421100
Q ss_pred ccccceeEEEEecCCCccceecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeee--ecCCCCeeeEEEc
Q 042146 75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDFN 151 (262)
Q Consensus 75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~ 151 (262)
...+.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+ ..|...|.+++|+
T Consensus 119 -------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 119 -------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp -------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred -------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 0114566778899999999999998 69999999999999999999999998 7899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEE---cCCCeEEEEecCCCce-eeEEecc
Q 042146 152 RDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVG---TLDNTLRLWNYSTRKI-LKTYSGY 205 (262)
Q Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~ 205 (262)
|++++|++++.||.|++||++. +++.+|++| +.|+.|++||+++++. +.....
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-
Confidence 9999999999999999999876 678899999 7999999999998765 222221
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.|...+.+++|+|++++|++++. .||.|++|++..
T Consensus 265 --------------------~~~~~v~~~~~s~~~~~l~~~g~-~dg~i~i~d~~~ 299 (402)
T 2aq5_A 265 --------------------DTSSGVLLPFFDPDTNIVYLCGK-GDSSIRYFEITS 299 (402)
T ss_dssp --------------------CCCSSCEEEEEETTTTEEEEEET-TCSCEEEEEECS
T ss_pred --------------------cCCCceeEEEEcCCCCEEEEEEc-CCCeEEEEEecC
Confidence 16778999999999999875442 599999999874
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-33 Score=228.07 Aligned_cols=245 Identities=25% Similarity=0.505 Sum_probs=201.2
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD- 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 78 (262)
+.|++|..|+ ..+.+..+.+|.++|.+++|+ +++|++|+.||+|++||+++... ...+.+|...+..
T Consensus 136 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC--------IHTLYGHTSTVRCM 205 (445)
T ss_dssp ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE--------EEEECCCSSCEEEE
T ss_pred ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE--------EEEECCCCCcEEEE
Confidence 4688888886 567888999999999999997 56999999999999999876432 2223333333322
Q ss_pred ------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCee
Q 042146 79 ------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT 146 (262)
Q Consensus 79 ------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 146 (262)
.+.|++||+.+++.+..+.+|...|.++++ +++++++|+.||.|++||+++++++..+..|...|.
T Consensus 206 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 283 (445)
T 2ovr_B 206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283 (445)
T ss_dssp EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred EecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence 238999999999999999999999999999 688999999999999999999999999999999999
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec---c
Q 042146 147 AIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG---Y 205 (262)
Q Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~ 205 (262)
+++| ++.++++++.||.|++||+++ ++++++++|+.||.|++||+++++++..+.. +
T Consensus 284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 284 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence 9999 788999999999999999876 4678999999999999999999999999886 5
Q ss_pred CCceeEEEE---------------EEecCCCeeEE--------ccccceEEEEEcCCCCeEEEeeecCCCc----EEEEe
Q 042146 206 TNSKYCISS---------------TFSVTNGKYIV--------SHRDPVISVASHPAKNIIASGALDNDRT----MKIWT 258 (262)
Q Consensus 206 ~~~~~~~~~---------------~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~l~~~~~d~d~~----i~iw~ 258 (262)
...+.++.. .+....+..+. +|.+.|.+++|+|++.++++++ .||+ |.+||
T Consensus 362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~--~dg~~~~~l~v~d 439 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVLD 439 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC--SSSSSCCEEEEEE
T ss_pred CCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc--cCCCCccEEEEEE
Confidence 555555442 11112222111 3677899999999999999999 8897 99999
Q ss_pred eccC
Q 042146 259 QEKE 262 (262)
Q Consensus 259 ~~~~ 262 (262)
++.+
T Consensus 440 f~~~ 443 (445)
T 2ovr_B 440 FDVD 443 (445)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.2e-34 Score=227.82 Aligned_cols=236 Identities=14% Similarity=0.222 Sum_probs=182.1
Q ss_pred cccccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCCc---ccc---ccc
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGHE---QGI---SDL 79 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~---~~v---~~~ 79 (262)
.++++...+.+|...|++++|+|++ ++|++|+.||.|++||+......... ....+..+.... ..+ ...
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4566778889999999999999999 99999999999999999754322111 111111111111 111 122
Q ss_pred eeEEEEecCCCccceeccc---CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-
Q 042146 80 ATIRLWDVPTATSLKTLIG---HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT- 155 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~- 155 (262)
+.|++||+.. ..+..+.. |...|.+++|+|++++|++|+.||.|++||+ +++++..+..|...|.+++|+|+++
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 3899999985 44444443 4488999999999999999999999999999 5778888999999999999999998
Q ss_pred EEEEEeCCCeEEEEeCCC-----------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee-
Q 042146 156 MIVTSSYDGLYRILDAST-----------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY- 210 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~-----------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 210 (262)
+|++++.|+.|++||++. | ++.+|++++.|+.|++||+++++.+..+..+.....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 999999999999999874 7 899999999999999999999988888776542211
Q ss_pred ---EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 211 ---CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 211 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+...|. ....+..++|+|++++ +++ .|+.|++||+..
T Consensus 299 ~~~~~~~~~~---------p~~~~~~~~~s~dg~~--s~s--~d~~i~iwd~~~ 339 (383)
T 3ei3_B 299 HLTPIKATWH---------PMYDLIVAGRYPDDQL--LLN--DKRTIDIYDANS 339 (383)
T ss_dssp TSCCCCCEEC---------SSSSEEEEECBCCTTT--CTT--CCCCEEEEETTT
T ss_pred cccceEEecc---------CCCCceEEEecCCccc--ccC--CCCeEEEEecCC
Confidence 1111221 3456777888898888 777 899999999864
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=235.87 Aligned_cols=244 Identities=14% Similarity=0.203 Sum_probs=184.2
Q ss_pred ccccceec-ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-----------
Q 042146 12 PYTLTQTL-NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD----------- 78 (262)
Q Consensus 12 ~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------- 78 (262)
..+++..+ ++|.++|++++|+| ++++|++|+.||+|++||+........ ......+ .|...+..
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV--YSSSLTY-DCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--CSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--cceeeec-cCCCCEEEEEEeCCCCEEE
Confidence 34566777 89999999999999 999999999999999999865211110 0000111 12222222
Q ss_pred ----ceeEEEEecC---CCccceecc----------c--CCcceEEEE--EeCCCCEEEeecCCCeEEEEECCCCeeeee
Q 042146 79 ----LATIRLWDVP---TATSLKTLI----------G--HTNYVFCIN--FNPQSNRIVSDTFNETIRIWDIKTGKCLKV 137 (262)
Q Consensus 79 ----~~~i~v~d~~---~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 137 (262)
.+.|++||++ +++...... . +...+.++. ++|+++++++|+.||.|++||+++++++..
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 2389999995 444433322 1 455677777 557899999999999999999999999999
Q ss_pred eec--CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEE
Q 042146 138 LPA--HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRL 190 (262)
Q Consensus 138 ~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i 190 (262)
+.. |...|++++|+|++++|++++.||.|++||++. +++.+|++|+.||.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 988 889999999999999999999999999999876 45779999999999999
Q ss_pred EecCCCceeeEEeccCCceeEEEEEEecC--CCeeEEc--cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 191 WNYSTRKILKTYSGYTNSKYCISSTFSVT--NGKYIVS--HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 191 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
||+++++++..+.++...+.......... ....+.+ |...|++++|+ ++++|++++ .|+.|++|++.+
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~--~d~~i~~wd~~~ 359 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE--ATSSIVMFSLNE 359 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG--GGTEEEEEETTC
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC--CCCeEEEEECCC
Confidence 99999999999988765443221111000 0001122 78889999999 779999999 899999999864
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.8e-34 Score=230.48 Aligned_cols=223 Identities=23% Similarity=0.460 Sum_probs=186.5
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-- 77 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 77 (262)
+.|++|..|+ ..+.+..+.+|.++|.+++|+|++ +|++|+.||+|++||+++.... ..+.+|...+.
T Consensus 139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--------~~~~~h~~~v~~l 209 (464)
T 3v7d_B 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------HVFEGHNSTVRCL 209 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--------EEECCCSSCEEEE
T ss_pred cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--------EEECCCCCccEEE
Confidence 4689999886 567888999999999999999988 8999999999999998764321 22222222222
Q ss_pred ---------------cceeEEEEecCCCcc-----------------------ceecccCCcceEEEEEeCCCCEEEeec
Q 042146 78 ---------------DLATIRLWDVPTATS-----------------------LKTLIGHTNYVFCINFNPQSNRIVSDT 119 (262)
Q Consensus 78 ---------------~~~~i~v~d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 119 (262)
..+.|++||+.++.. +..+.+|...+.++ +++++++++|+
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~ 287 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence 223899999987653 33566788888877 56799999999
Q ss_pred CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEE
Q 042146 120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILV 181 (262)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~ 181 (262)
.||.|++||+++++++..+.+|...|.+++|+|+++++++++.||.|++||+++ .++++|++
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s 367 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 367 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEE
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEE
Confidence 999999999999999999999999999999999999999999999999999976 45789999
Q ss_pred EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 182 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++.||.|++||+++++...... +...+..++|+|++.+|++++ ||.|++|++++
T Consensus 368 ~s~dg~v~vwd~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~~ 421 (464)
T 3v7d_B 368 AAADGSIRGWDANDYSRKFSYH-----------------------HTNLSAITTFYVSDNILVSGS---ENQFNIYNLRS 421 (464)
T ss_dssp EETTSEEEEEETTTCCEEEEEE-----------------------CTTCCCEEEEEECSSEEEEEE---TTEEEEEETTT
T ss_pred EeCCCcEEEEECCCCceeeeec-----------------------CCCCccEEEEEeCCCEEEEec---CCeEEEEECCC
Confidence 9999999999999877665554 666788899999999999986 68999999864
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=229.70 Aligned_cols=202 Identities=14% Similarity=0.214 Sum_probs=166.2
Q ss_pred CCCCceeeecc--c--ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFRP--Y--TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
+.|++|..|+. . +....+.+|.++|.+++|+|++++|++++.|++|++||+....
T Consensus 30 ~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~--------------------- 88 (377)
T 3dwl_C 30 TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--------------------- 88 (377)
T ss_dssp CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---------------------------
T ss_pred cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC---------------------
Confidence 36888888863 3 6788899999999999999999999999999999999765311
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---eeeeeec-CCCCeeeEEEccC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---CLKVLPA-HSDPVTAIDFNRD 153 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~ 153 (262)
.......+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|+
T Consensus 89 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 89 -----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp -----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred -----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 012445667799999999999999999999999999999999876 3667777 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCC--------------------------C-----------CCccEEEEEcCCCeEEEEecCCC
Q 042146 154 GTMIVTSSYDGLYRILDAS--------------------------T-----------PNGKFILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~--------------------------~-----------~~~~~l~~~~~dg~i~i~d~~~~ 196 (262)
+++|++++.|+.|++||++ . |++++|++++.||.|++||++++
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999999999999999974 0 78999999999999999999998
Q ss_pred ce----eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 197 KI----LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 197 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+. +..+.. |..+|.+++|+|++++|++++ .|+.+ +|+..
T Consensus 238 ~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~l~~~~--~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKL----------------------SQLPLRSLLWANESAIVAAGY--NYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEEC----------------------SSSCEEEEEEEETTEEEEEES--SSSEE-EECCC
T ss_pred CCcceeeEeecC----------------------CCCceEEEEEcCCCCEEEEEc--CCcEE-EEEeC
Confidence 87 666665 888999999999999999987 55555 66654
No 64
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.4e-34 Score=229.51 Aligned_cols=220 Identities=22% Similarity=0.453 Sum_probs=184.0
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD- 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 78 (262)
+.|++|..|+ ..+....+.+|.++|.+++| ++++|++|+.||+|++||+.+... ...+.+|...+..
T Consensus 150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~l 219 (435)
T 1p22_A 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--------LNTLIHHCEAVLHL 219 (435)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE--------EEEECCCCSCEEEE
T ss_pred eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE--------EEEEcCCCCcEEEE
Confidence 3688888886 56678889999999999999 788999999999999999876432 2222233332222
Q ss_pred ------------ceeEEEEecCCCccc---eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC
Q 042146 79 ------------LATIRLWDVPTATSL---KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD 143 (262)
Q Consensus 79 ------------~~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (262)
.+.|++||+.++... ..+.+|...|.++++ +++++++|+.||.|++||+++++.+..+..|..
T Consensus 220 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 238999999988766 567889999999999 688999999999999999999999999999999
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCc--------
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRK-------- 197 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~-------- 197 (262)
.|.++.++ ++++++|+.||.|++||+++ .++.+|++|+.||.|++||+++++
T Consensus 298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 375 (435)
T 1p22_A 298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375 (435)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence 99999984 68999999999999999986 578899999999999999998766
Q ss_pred -eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 198 -ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++..+.+ |...|.+++| ++.+|++++ .||.|++|++.+
T Consensus 376 ~~~~~~~~----------------------h~~~v~~l~~--~~~~l~s~s--~Dg~i~iwd~~~ 414 (435)
T 1p22_A 376 LCLRTLVE----------------------HSGRVFRLQF--DEFQIVSSS--HDDTILIWDFLN 414 (435)
T ss_dssp TEEEEECC----------------------CSSCCCCEEE--CSSCEEECC--SSSEEEEEC---
T ss_pred hheeeccC----------------------CCCCeEEEEe--CCCEEEEEe--CCCEEEEEECCC
Confidence 5666655 8889999999 688899999 899999999864
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.3e-34 Score=223.96 Aligned_cols=213 Identities=14% Similarity=0.211 Sum_probs=176.0
Q ss_pred ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeE
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATI 82 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i 82 (262)
.+..|.++|++++|+|++++|++++.|+.|++||++... ......+.+|...+.. .+.|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 345699999999999999999999999999999987642 0012222233322222 2389
Q ss_pred EEEecCCCccce--ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee----eeeeecCCCCeeeEEEccCCCE
Q 042146 83 RLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC----LKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 83 ~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
++||+++++... .+..|...|.+++|+|+++++++++.||.|++||++.++. ......|...|.+++|+|++++
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 999998876443 3467889999999999999999999999999999987762 2333568899999999999999
Q ss_pred EEEEeCCCeEEEEeCC------------------C--------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146 157 IVTSSYDGLYRILDAS------------------T--------------------PNGKFILVGTLDNTLRLWNYSTRKI 198 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~------------------~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~ 198 (262)
|++++.||.|++||++ . +++++|++++.||.|++||++++++
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 9999999999999953 1 7889999999999999999999999
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+..+.. |..+|.+++|+|++.+|+++ .|+.|++|++..
T Consensus 237 ~~~~~~----------------------~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~~ 274 (372)
T 1k8k_C 237 VATLAS----------------------ETLPLLAVTFITESSLVAAG---HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEC----------------------SSCCEEEEEEEETTEEEEEE---TTSSCEEEEEET
T ss_pred eEEEcc----------------------CCCCeEEEEEecCCCEEEEE---eCCeEEEEEccC
Confidence 988886 88899999999999988876 589999999865
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=220.45 Aligned_cols=187 Identities=21% Similarity=0.396 Sum_probs=170.1
Q ss_pred cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK 94 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~ 94 (262)
....+.+|.++|++++|+|++++|++++.||.|++||+ .+++.+.
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-----------------------------------~~~~~~~ 68 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS-----------------------------------LNGERLG 68 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEET-----------------------------------TTCCEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeC-----------------------------------CCchhhh
Confidence 45568899999999999999999999999999888854 4567777
Q ss_pred ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC-----CeEEEE
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRIL 169 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~ 169 (262)
.+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.+ +.|++|
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 888899999999999999999999999999999999999988887 88999999999999999999999 999999
Q ss_pred eCCC---------------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEEE
Q 042146 170 DAST---------------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISST 215 (262)
Q Consensus 170 d~~~---------------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 215 (262)
|+.. +++++|++++.||.|++||+++ ++.+..+..
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------- 216 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL----------- 216 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-----------
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-----------
Confidence 9754 4678999999999999999998 677777776
Q ss_pred EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++.+|++++ .|+.|++||+..
T Consensus 217 -----------~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~ 249 (369)
T 3zwl_B 217 -----------HEKSISDMQFSPDLTYFITSS--RDTNSFLVDVST 249 (369)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred -----------CCCceeEEEECCCCCEEEEec--CCceEEEEECCC
Confidence 888999999999999999999 899999999864
No 67
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.5e-34 Score=226.20 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=161.4
Q ss_pred CCCCceeeeccc-------ccceecccCcCceEEEEEcc--------CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC
Q 042146 2 SSDRSLESFRPY-------TLTQTLNGHLRAVSYVKFSH--------DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL 66 (262)
Q Consensus 2 s~d~~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 66 (262)
+.|++++.|+.. .+...+.+|.+.|++++|+| ++++||+|+.|++|+|||+
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~-------------- 173 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL-------------- 173 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE--------------
T ss_pred eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC--------------
Confidence 468999998632 24556889999999999998 7899999999999988854
Q ss_pred ccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeee--------
Q 042146 67 QKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKV-------- 137 (262)
Q Consensus 67 ~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~-------- 137 (262)
.++.++..+..|...+.+++|+|++ .+|++|+.||+|++||+++++....
T Consensus 174 ---------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 174 ---------------------TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp ---------------------ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred ---------------------CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 4555666677788999999999977 4799999999999999987754322
Q ss_pred -----------------eecCCCCeeeEEEc-cCCCEEEEEeCCCeEEEEeCCC--------------------------
Q 042146 138 -----------------LPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDAST-------------------------- 173 (262)
Q Consensus 138 -----------------~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~-------------------------- 173 (262)
..+|...+.++.|+ |+++.+++++.|+++++||+..
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 13577788999987 6999999999999999999864
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 239 (262)
.++.++++|+.||.|++||+.++++...+.. |..+|.+++|+|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~----------------------~~~~V~svafspd 370 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ----------------------LGMPIVDFCWHQD 370 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE----------------------CSSCEEEEEECTT
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC----------------------CCCcEEEEEEcCC
Confidence 2455788899999999999999988877766 8889999999999
Q ss_pred CCeEEEeeecCCCcEEEEee
Q 042146 240 KNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 240 ~~~l~~~~~d~d~~i~iw~~ 259 (262)
|++||+++ ++ .+.+|++
T Consensus 371 G~~LA~as--~~-Gv~lvrL 387 (393)
T 4gq1_A 371 GSHLAIAT--EG-SVLLTRL 387 (393)
T ss_dssp SSEEEEEE--SS-EEEEEEE
T ss_pred CCEEEEEe--CC-CeEEEEE
Confidence 99999998 55 4666665
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=216.12 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=178.5
Q ss_pred eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc----------
Q 042146 9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------- 78 (262)
Q Consensus 9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 78 (262)
.+.++++.+.+.+|.++|++++| |++++|++++.||.|++||+...... ..+..|...+..
T Consensus 4 ~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 4 PFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--------TVVYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp -CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--------EEEEECSSCEEEEEEETTTTEE
T ss_pred ccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--------EEeecCCccEEEEEECCCCCEE
Confidence 34567888999999999999999 99999999999999999998653221 111222222211
Q ss_pred -----ceeEEEEecCCC---ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 79 -----LATIRLWDVPTA---TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 79 -----~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
.+.+++|++... +.+..+..|...|.+++| +++++++++.||.|++|| .++.+..+..|..++.+++|
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence 227899998664 556778889999999999 578999999999999999 67778888899999999999
Q ss_pred cc-CCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 151 NR-DGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 151 ~~-~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
+| +++.+++++.||.|++||... +++. +++++.||.|++||+++++++..+..
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~------ 223 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG------ 223 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC------
T ss_pred ccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc------
Confidence 99 899999999999999999654 5566 99999999999999999999988887
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++ .|++++ .||.|++|++.+
T Consensus 224 ----------------~~~~i~~~~~~~~~-~l~~~~--~dg~v~iwd~~~ 255 (313)
T 3odt_A 224 ----------------HESFVYCIKLLPNG-DIVSCG--EDRTVRIWSKEN 255 (313)
T ss_dssp ----------------CSSCEEEEEECTTS-CEEEEE--TTSEEEEECTTT
T ss_pred ----------------CCceEEEEEEecCC-CEEEEe--cCCEEEEEECCC
Confidence 88899999999999 588888 899999999864
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=225.10 Aligned_cols=214 Identities=16% Similarity=0.253 Sum_probs=173.5
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-CCCCCcccc--CCcccc---ccceeEEEEecCCCcccee
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-PPSPLQKFT--GHEQGI---SDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~--~~~~~v---~~~~~i~v~d~~~~~~~~~ 95 (262)
|.+.|++++|+|++++|++++.||.|++||.......... ....+..+. .....+ ...+.|++||+.+++.+..
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 6889999999999999999999999999984332111000 011111111 111111 1123899999999998888
Q ss_pred cccCCcc---------------eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 96 LIGHTNY---------------VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 96 ~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
+..+... +.+++|+|++ .+++++.+|.|++||+++++.+..+..|..+|.+++|+|++++|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 8877766 9999999874 58888899999999999999998998999999999999999999999
Q ss_pred eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146 161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN 220 (262)
Q Consensus 161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (262)
+.|+.|++||++. +++ ++++++.||.|++||+++++++..+..
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------- 328 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV---------------- 328 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC----------------
T ss_pred cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc----------------
Confidence 9999999999876 666 999999999999999999998888876
Q ss_pred CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+|++++|++++ .||.|++|++..
T Consensus 329 ------~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~ 361 (425)
T 1r5m_A 329 ------DGVPIFAGRISQDGQKYAVAF--MDGQVNVYDLKK 361 (425)
T ss_dssp ------TTCCEEEEEECTTSSEEEEEE--TTSCEEEEECHH
T ss_pred ------CCccEEEEEEcCCCCEEEEEE--CCCeEEEEECCC
Confidence 888999999999999999999 899999999863
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-35 Score=230.46 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=154.5
Q ss_pred ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC--cccee
Q 042146 18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA--TSLKT 95 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~--~~~~~ 95 (262)
.++.|.++|++++|+|++++|++|+.|+.|++||+. ++ +.+..
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-----------------------------------~~~~~~~~~ 50 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-----------------------------------GNGWKHART 50 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE-----------------------------------TTEEEECCC
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc-----------------------------------CCceEEEEE
Confidence 445577899999999999999999999998888653 34 56667
Q ss_pred cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 51 ~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 51 FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130 (377)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence 88899999999999999999999999999999999877 666777899999999999999999999999999999976
Q ss_pred C------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC----ceeEEEEEEecCCCeeE
Q 042146 173 T------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN----SKYCISSTFSVTNGKYI 224 (262)
Q Consensus 173 ~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 224 (262)
. |++++|++++.|+.|++||++.++.......... ........ +
T Consensus 131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 202 (377)
T 3dwl_C 131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE--------Y 202 (377)
T ss_dssp ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC--------C
T ss_pred CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc--------c
Confidence 4 7889999999999999999964332111100000 00000000 0
Q ss_pred EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 225 ~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+|...|.+++|+|++++|++++ .||.|++|++..
T Consensus 203 -~~~~~v~~~~~sp~~~~l~~~~--~d~~i~iwd~~~ 236 (377)
T 3dwl_C 203 -PSGGWVHAVGFSPSGNALAYAG--HDSSVTIAYPSA 236 (377)
T ss_dssp -CCSSSEEEEEECTTSSCEEEEE--TTTEEC-CEECS
T ss_pred -cCCceEEEEEECCCCCEEEEEe--CCCcEEEEECCC
Confidence 2899999999999999999999 899999999864
No 71
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.5e-33 Score=223.64 Aligned_cols=221 Identities=20% Similarity=0.365 Sum_probs=176.1
Q ss_pred eecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCC--CCCCCCccccCCccccccc--------------
Q 042146 17 QTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDS--TPPSPLQKFTGHEQGISDL-------------- 79 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~-------------- 79 (262)
.....|.+.|++++|+|+ +.+|++++.||.|++|++........ ........+.+|...+..+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445579999999999997 78999999999999999975321111 1123333344444333322
Q ss_pred --eeEEEEecCCCcc-------ceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCee
Q 042146 80 --ATIRLWDVPTATS-------LKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVT 146 (262)
Q Consensus 80 --~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~ 146 (262)
+.|++|++..+.. ...+..|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 2899999987432 345668999999999999 7889999999999999999977 56777888999999
Q ss_pred eEEEccCCC-EEEEEeCCCeEEEEeCCC---------------------CCc-cEEEEEcCCCeEEEEecCCC-------
Q 042146 147 AIDFNRDGT-MIVTSSYDGLYRILDAST---------------------PNG-KFILVGTLDNTLRLWNYSTR------- 196 (262)
Q Consensus 147 ~~~~~~~~~-~l~~~~~dg~i~~~d~~~---------------------~~~-~~l~~~~~dg~i~i~d~~~~------- 196 (262)
+++|+|++. +|++|+.||.|++||++. |++ .+|++++.||.|++||+...
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999986 566 47999999999999999873
Q ss_pred -------ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 197 -------KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 197 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
+++..+.+ |...|++++|+|+++ +|++++ .||.|++|++.+
T Consensus 362 ~~~~~~~~~~~~~~~----------------------h~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGG----------------------HTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCC----------------------CSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECH
T ss_pred ccccCCcceEEEcCC----------------------CCCCceEEEECCCCCCEEEEEE--CCCCEEEeEccc
Confidence 33333333 888999999999999 889998 899999999864
No 72
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.3e-34 Score=222.70 Aligned_cols=228 Identities=12% Similarity=0.232 Sum_probs=176.2
Q ss_pred cceecccCcCceEEEEEccCCCeE-EEecC---CCeEEEeecCCCCCCCC---CCCCCCccccCCcc----c-c---ccc
Q 042146 15 LTQTLNGHLRAVSYVKFSHDGRLL-TSSSA---EKTLLTYSLSSISNFDS---TPPSPLQKFTGHEQ----G-I---SDL 79 (262)
Q Consensus 15 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~---d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~----~-v---~~~ 79 (262)
..+.+++|..+|.+++|+|+++.+ ++|+. ||.|++||+........ .....+..+..... . + ...
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 445567899999999999998655 56665 99999999976432111 11111222211111 1 1 123
Q ss_pred eeEEEEecCCCc-cceecccCCcceEEEEE------eCCCCEEEeecCCCeEEEEECCCCe-eeeeeecCCC----Ceee
Q 042146 80 ATIRLWDVPTAT-SLKTLIGHTNYVFCINF------NPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSD----PVTA 147 (262)
Q Consensus 80 ~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~ 147 (262)
+.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|++||+++++ ++..+..|.+ .+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 389999999988 88889999999999965 6789999999999999999999886 6777766554 8999
Q ss_pred EE----EccCCCEEEEEeCCCeEEEEeCCC-------------------C---CccEEEEEcCCCeEEEEecCCCceeeE
Q 042146 148 ID----FNRDGTMIVTSSYDGLYRILDAST-------------------P---NGKFILVGTLDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 148 ~~----~~~~~~~l~~~~~dg~i~~~d~~~-------------------~---~~~~l~~~~~dg~i~i~d~~~~~~~~~ 201 (262)
++ |+|++++|++++.||.|++||++. | ++++|++++.||.|++||+++++.+..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 98 788999999999999999999987 5 899999999999999999998776655
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
+... ...+|...|.+++|+|+++ +|++++ .||.|++|+++.
T Consensus 250 ~~~~-----------------~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 291 (357)
T 3i2n_A 250 FASV-----------------SEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYEY 291 (357)
T ss_dssp EEEE-----------------EEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEEC
T ss_pred eeee-----------------ccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecCC
Confidence 5410 0112889999999999998 899999 899999999863
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-32 Score=211.37 Aligned_cols=211 Identities=32% Similarity=0.547 Sum_probs=176.2
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-- 77 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 77 (262)
+.|+.+..|. ..+....+.+|..+|.+++|+|++++|++++.|+.|++||++.... ...+.+|...+.
T Consensus 42 ~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------~~~~~~~~~~v~~~ 113 (312)
T 4ery_A 42 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--------LKTLKGHSNYVFCC 113 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCEEEE
T ss_pred eCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--------EEEEcCCCCCEEEE
Confidence 3688888886 4567788899999999999999999999999999999999875432 222223322222
Q ss_pred -------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCC
Q 042146 78 -------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSD 143 (262)
Q Consensus 78 -------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~ 143 (262)
..+.|++||+++++.+..+..|..+|.+++|+|+++++++++.||.|++||+++++.+..+. .+..
T Consensus 114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 193 (312)
T 4ery_A 114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193 (312)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC
Confidence 22389999999999999999999999999999999999999999999999999988877664 4567
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
++..++|+|++++|++++.|+.|++||++. +++.+|++|+.||.|++||+++++.+.
T Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 899999999999999999999999999876 467889999999999999999999999
Q ss_pred EEeccCCceeEEEEEEecCCCe
Q 042146 201 TYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
.+.+|...+..+ .+.+....
T Consensus 274 ~~~~h~~~v~~~--~~~p~~~~ 293 (312)
T 4ery_A 274 KLQGHTDVVIST--ACHPTENI 293 (312)
T ss_dssp EECCCSSCEEEE--EECSSSSE
T ss_pred hhhccCCcEEEE--eecCcCCc
Confidence 999988776655 44443333
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.5e-33 Score=224.66 Aligned_cols=230 Identities=22% Similarity=0.399 Sum_probs=186.6
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEc--cCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-------------
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFS--HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS------------- 64 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------------- 64 (262)
+.|+++..|+ ..+....+.+|.++|.+++|+ +++++|++|+.||+|++||+............
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 4688888886 566788999999999999998 57889999999999999999765332111000
Q ss_pred --CCccccCCcccccc-------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEEC
Q 042146 65 --PLQKFTGHEQGISD-------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI 129 (262)
Q Consensus 65 --~~~~~~~~~~~v~~-------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 129 (262)
....+.+|...+.. .+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 11223334333322 228999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEE
Q 042146 130 KTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRL 190 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i 190 (262)
++++++..+.+|...|.+++|+ +.+|++++.||.|++||++. ++++++++|+ ||.|++
T Consensus 340 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 340 ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 9999999999999999999997 57999999999999999987 6788999988 899999
Q ss_pred EecCCCceeeEE-eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 191 WNYSTRKILKTY-SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 191 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
||+++++++..+ .. |...|.+++|+ .+.++++++ .||.+.+|-+
T Consensus 417 wd~~~g~~~~~~~~~----------------------~~~~v~~v~~~-~~~l~~~~~--~~g~~~i~~l 461 (464)
T 3v7d_B 417 YNLRSGKLVHANILK----------------------DADQIWSVNFK-GKTLVAAVE--KDGQSFLEIL 461 (464)
T ss_dssp EETTTCCEEESCTTT----------------------TCSEEEEEEEE-TTEEEEEEE--ETTEEEEEEE
T ss_pred EECCCCcEEehhhcc----------------------CCCcEEEEEec-CCEEEEEEE--eCCeEEEEEe
Confidence 999999988763 33 78899999998 344455555 5777666544
No 75
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=234.77 Aligned_cols=214 Identities=12% Similarity=0.149 Sum_probs=164.3
Q ss_pred CcCceEEEEEccCC---------CeEEE-------------------ecCCCeEEEeecCCCCCCC------CCCCCCCc
Q 042146 22 HLRAVSYVKFSHDG---------RLLTS-------------------SSAEKTLLTYSLSSISNFD------STPPSPLQ 67 (262)
Q Consensus 22 h~~~v~~~~~~~~~---------~~l~s-------------------~~~d~~i~iw~~~~~~~~~------~~~~~~~~ 67 (262)
+.+.|.+++|+|++ ++||+ ++.|++|+||+++...... ......+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57889999999876 56665 5578999999986543210 00011111
Q ss_pred cccCCcc-------c----cccceeEEEEecCCCcc-----------ceecccCCcceEEEEEeCCCCEEEeecCCCeEE
Q 042146 68 KFTGHEQ-------G----ISDLATIRLWDVPTATS-----------LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIR 125 (262)
Q Consensus 68 ~~~~~~~-------~----v~~~~~i~v~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 125 (262)
.+..+.. . ....+.|++||+..+.. ...+.+|...|++++|+|+ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 1111110 1 12234899999976642 2356789999999999986 4899999999999
Q ss_pred EEECCCCe-eeeeeecCCCCeeeE--EEccCC-CEEEEEeCCCeEEEEeCCC----------------------CCccEE
Q 042146 126 IWDIKTGK-CLKVLPAHSDPVTAI--DFNRDG-TMIVTSSYDGLYRILDAST----------------------PNGKFI 179 (262)
Q Consensus 126 vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~~d~~~----------------------~~~~~l 179 (262)
+||++++. +...+.+|...|.++ .|+|++ .+|++|+.|++|++||++. |+++.+
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 99999764 455688999999999 578887 8999999999999999864 678889
Q ss_pred EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 180 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
++++.|+.|++||++++.++..+.+ |.+.|++++|+|++++|++|+ .||+|++|++
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~g----------------------H~~~V~sva~Sp~g~~l~Sgs--~Dgtv~lwd~ 426 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVS----------------------RETTITAIGVSRLHPMVLAGS--ADGSLIITNA 426 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEE----------------------CSSCEEEEECCSSCCBCEEEE--TTTEEECCBS
T ss_pred EEeCCCCcEEEEECcccccceeeec----------------------CCCceEEEEeCCCCCeEEEEE--CCCEEEEEec
Confidence 9999999999999999988877776 899999999999999999999 8999999997
Q ss_pred c
Q 042146 260 E 260 (262)
Q Consensus 260 ~ 260 (262)
.
T Consensus 427 ~ 427 (524)
T 2j04_B 427 A 427 (524)
T ss_dssp C
T ss_pred h
Confidence 5
No 76
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.9e-33 Score=249.78 Aligned_cols=232 Identities=22% Similarity=0.403 Sum_probs=189.6
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ce
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LA 80 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~ 80 (262)
...+.+|.+.|++++|+|++++|++|+.||+|++||+.+... ...+.+|...+.. .+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 679 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--------LLDIKAHEDEVLCCAFSSDDSYIATCSADK 679 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--------EEEeccCCCCEEEEEEecCCCEEEEEeCCC
Confidence 346679999999999999999999999999999999866432 2223333333322 23
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
.|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+++++++..+.+|.+.|.+++|+|++++|+
T Consensus 680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence 899999999999999999999999999999 566899999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCC---------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe-c
Q 042146 159 TSSYDGLYRILDAST---------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS-G 204 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~---------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 204 (262)
+++.||.|++||++. ++++.+++++ ++.+.+||+.++..+..+. +
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC
Confidence 999999999999753 5677777776 6788899988888777665 4
Q ss_pred cCCceeEEEEEEecCCCeeE----------------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 205 YTNSKYCISSTFSVTNGKYI----------------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+...+.++. +++....++ .+|...|.+++|+|+++.|++++ .||.|++|++.
T Consensus 839 ~~~~v~~~~--~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s--~dg~v~vw~~~ 912 (1249)
T 3sfz_A 839 HHSTIQYCD--FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS--DDQTIRVWETK 912 (1249)
T ss_dssp SSSCCCEEE--ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEHH
T ss_pred CCCceEEEE--EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe--CCCeEEEEEcc
Confidence 444444433 222222221 23888999999999999999999 89999999975
No 77
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=8.4e-34 Score=216.06 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=150.4
Q ss_pred ceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc-ccCCccccccceeEEEEec-CCCccceeccc
Q 042146 25 AVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK-FTGHEQGISDLATIRLWDV-PTATSLKTLIG 98 (262)
Q Consensus 25 ~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~i~v~d~-~~~~~~~~~~~ 98 (262)
.|++++|+|+ ++++++++. .+++|++.+.+ .+.. ..+|. ..|++|++ .+++.+..+..
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~--------lv~ss~~g~d------~~V~~~~~s~dG~~~~s~~~ 176 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRR--------LVSSSGTLSD------QQVEVMTFAEDGGGKENQFL 176 (356)
T ss_dssp EEEEECC------CCEEEEEEEE--EEEEEEETTTE--------EEEEESSSTT------CEEEEEEECTTSCEEEEEEE
T ss_pred ceEEEEECCCccccccEEEeCCC--eEEEEecCCCc--------EEEecccCCC------CcEEEEEECCCCceeeeecc
Confidence 5566667777 778888774 47788763211 1111 12222 36999999 55888888889
Q ss_pred CCcceEEEEEeC---CCCEEEeecCCCeEEEEECCCCeeeeeeecCCC---CeeeEEEccCCCEE------------EEE
Q 042146 99 HTNYVFCINFNP---QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMI------------VTS 160 (262)
Q Consensus 99 ~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l------------~~~ 160 (262)
|...+..++|+| ++.+|++++.|++|+|||++++++++++.+|.. .+.+++|+|+|.++ ++|
T Consensus 177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence 999999999999 779999999999999999999999999986543 67778999999876 567
Q ss_pred eCCCeEEEEeCCC-----------CCcc------------EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146 161 SYDGLYRILDAST-----------PNGK------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217 (262)
Q Consensus 161 ~~dg~i~~~d~~~-----------~~~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
+.|++|++||..+ |+++ ++++|+.|++|+|||+.+++++.++.+
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g------------- 323 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP------------- 323 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECC-------------
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC-------------
Confidence 8899999999775 2333 578899999999999999999999987
Q ss_pred cCCCeeEEccccce-EEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 218 VTNGKYIVSHRDPV-ISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 218 ~~~~~~~~~~~~~v-~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...+ ..++|+|++++|++|+ .|++|+||++.
T Consensus 324 ---------H~~~vvs~vafSPDG~~LaSGS--~D~TIklWd~~ 356 (356)
T 2w18_A 324 ---------VSDQHWSFVKWSGTDSHLLAGQ--KDGNIFVYHYS 356 (356)
T ss_dssp ---------C--CCCCEEEECSSSSEEEEEC--TTSCEEEEEEC
T ss_pred ---------CCCCeEEEEEECCCCCEEEEEE--CCCcEEEecCC
Confidence 65544 4689999999999999 89999999973
No 78
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=227.52 Aligned_cols=230 Identities=17% Similarity=0.353 Sum_probs=167.4
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC---CCCCCCccccCCc------------ccc---------
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPLQKFTGHE------------QGI--------- 76 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~------------~~v--------- 76 (262)
.|.+.|++++|+|++++||+|+.||.|++|++........ ........+.+|. ..+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4689999999999999999999999999999876432100 0000112222232 111
Q ss_pred --------ccceeEEEEecCCCccc---------------------------------------ee-cccCCcceEEEEE
Q 042146 77 --------SDLATIRLWDVPTATSL---------------------------------------KT-LIGHTNYVFCINF 108 (262)
Q Consensus 77 --------~~~~~i~v~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~ 108 (262)
...+.|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 12238999998764331 11 3579999999999
Q ss_pred eCCCCEEEeecCCCeEEEEECCC-Ceeee-------eeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC------
Q 042146 109 NPQSNRIVSDTFNETIRIWDIKT-GKCLK-------VLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 109 ~~~~~~l~~~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~------ 173 (262)
+|++++|++| .|+.|++||+++ ++.+. .+..|...|.+++|+|++ ++|++++.||.|++||++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999999 799999999984 44444 356799999999999998 9999999999999999764
Q ss_pred ------------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEEEEecCCCe
Q 042146 174 ------------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 174 ------------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
|++++|++++. +.|++||+++ ++++..+..|......+...+. .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-~--- 339 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE-N--- 339 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH-T---
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc-c---
Confidence 56789999998 9999999997 8888888874321000000000 0
Q ss_pred eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..-..+..++|+|++++|++++ .||.|++||+..
T Consensus 340 ---~~i~~~~~~~~s~~~~~l~s~s--~dg~v~iwd~~~ 373 (447)
T 3dw8_B 340 ---DCIFDKFECCWNGSDSVVMTGS--YNNFFRMFDRNT 373 (447)
T ss_dssp ---SGGGCCCCEEECTTSSEEEEEC--STTEEEEEETTT
T ss_pred ---cccccceEEEECCCCCEEEEec--cCCEEEEEEcCC
Confidence 0000134599999999999999 899999999864
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-33 Score=220.87 Aligned_cols=233 Identities=16% Similarity=0.273 Sum_probs=178.2
Q ss_pred ecccCcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCC-------CCCCCcc--ccCCc---c-cc---c
Q 042146 18 TLNGHLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDST-------PPSPLQK--FTGHE---Q-GI---S 77 (262)
Q Consensus 18 ~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~--~~~~~---~-~v---~ 77 (262)
..++|.++|++++|+|+ ...+++++.++.|++||+......... ....+.. +.... . .+ .
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44589999999999984 456677777789999998754321110 0111111 11110 0 11 1
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRD 153 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~ 153 (262)
..+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+ ..|...|.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 233899999999999999999999999999999 9999999999999999999999988887 679999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----------------------------------------------CccEEEEEcCCCe
Q 042146 154 GTMIVTSSYDGLYRILDASTP----------------------------------------------NGKFILVGTLDNT 187 (262)
Q Consensus 154 ~~~l~~~~~dg~i~~~d~~~~----------------------------------------------~~~~l~~~~~dg~ 187 (262)
+++|++++.||.|++||++.. .++++++++.||.
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~ 252 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENA 252 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSE
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCE
Confidence 999999999999999999860 1779999999999
Q ss_pred EEEEecCCCcee-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC--CCeEEEeeecCCCcEEEEeecc
Q 042146 188 LRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA--KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 188 i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|++||+++++.. ..+..+......+.. +..|...|.+++|+|+ +++|++++ .||.|++|+++.
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~vwd~~~ 318 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGR---------FDYSQCDIWYMRFSMDFWQKMLALGN--QVGKLYVWDLEV 318 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEE---------EECSSCCSSCCCCEECTTSSEEEEEC--TTSCEEEEECCS
T ss_pred EEEEeCCCccccccccccCCcchheecc---------ccccCCcEEEEEEcCCCCCcEEEEEe--cCCcEEEEECCC
Confidence 999999887541 111111111111111 1128889999999999 99999999 899999999864
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=217.54 Aligned_cols=214 Identities=16% Similarity=0.333 Sum_probs=156.4
Q ss_pred cccccceecccCcCceEEEEEccC---CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146 11 RPYTLTQTLNGHLRAVSYVKFSHD---GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV 87 (262)
Q Consensus 11 ~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~ 87 (262)
.+.+.++.+++|.+.|++++|+|+ |++|++|+.||.|++||++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--------------------------------- 73 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--------------------------------- 73 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT---------------------------------
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC---------------------------------
Confidence 467788889999999999999999 59999999999999997643
Q ss_pred CCCccc-eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE--ccCCCEEEEEeCCC
Q 042146 88 PTATSL-KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF--NRDGTMIVTSSYDG 164 (262)
Q Consensus 88 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg 164 (262)
.+..+ ..+.+|...|.+++|+|++++|++++.||.|++||+++++.+. +..|..+|.+++| +|++++|++++.||
T Consensus 74 -~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 151 (368)
T 3mmy_A 74 -SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDK 151 (368)
T ss_dssp -TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTS
T ss_pred -CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCC
Confidence 12232 5677899999999999999999999999999999999998776 4569999999999 88999999999999
Q ss_pred eEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEEec--cCCceeEEEEEEe--------
Q 042146 165 LYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG--YTNSKYCISSTFS-------- 217 (262)
Q Consensus 165 ~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~-------- 217 (262)
.|++||++. .....+++++.++.+++|+++.......... ......++.....
T Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 999999876 1223444455555555555543321111100 0011111111000
Q ss_pred ---cCCC----------------eeEEccc------------cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 218 ---VTNG----------------KYIVSHR------------DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 218 ---~~~~----------------~~~~~~~------------~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..++ ..+.+|. .+|.+++|+|++++|++++ .||.|++||+++
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~ 304 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG--SDGRFSFWDKDA 304 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE--TTSCEEEEETTT
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc--cCCeEEEEECCC
Confidence 0000 0111133 3799999999999999999 899999999864
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.4e-33 Score=217.78 Aligned_cols=226 Identities=12% Similarity=0.137 Sum_probs=177.6
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCC----CCCC-CCCCCCccc--cCCcc-cc---ccceeEEE
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS----NFDS-TPPSPLQKF--TGHEQ-GI---SDLATIRL 84 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~-~~~~~~~~~--~~~~~-~v---~~~~~i~v 84 (262)
.....+|.+.|++++|+|++++|++++.|+.|++|++.... .... .....+..+ ..... .+ ...+.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 44556899999999999999999999999999999987643 1100 011111111 11111 11 12338999
Q ss_pred Eec-CCCccceeccc--CCcceEEEEEeCCCCEEEeecCCCeEEEEECCC---------CeeeeeeecCCCCeeeEEEcc
Q 042146 85 WDV-PTATSLKTLIG--HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT---------GKCLKVLPAHSDPVTAIDFNR 152 (262)
Q Consensus 85 ~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~ 152 (262)
||+ .+++. ..+.. |...|.+++|+| ++++++++.|+.|++||+++ ++++..+. |...+.+++|+|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 76654 67778 999999999999 99999999999999999998 77777776 889999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-----------------------C-CccEEEEEcCCCeEEEEecCCC------ceeeEE
Q 042146 153 DGTMIVTSSYDGLYRILDAST-----------------------P-NGKFILVGTLDNTLRLWNYSTR------KILKTY 202 (262)
Q Consensus 153 ~~~~l~~~~~dg~i~~~d~~~-----------------------~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~ 202 (262)
++ +++++.|+.|++||++. + +++++++++.||.|++|+++.. +....+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999864 5 8899999999999999999887 777777
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+...... .+|...|.+++|+|++++|++++ .||.|++||+.+
T Consensus 239 ~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~ 282 (342)
T 1yfq_A 239 RCHRLNLKD-------------TNLAYPVNSIEFSPRHKFLYTAG--SDGIISCWNLQT 282 (342)
T ss_dssp ECCCCCTTC-------------CSSCCCEEEEEECTTTCCEEEEE--TTSCEEEEETTT
T ss_pred ecccccccc-------------cccceeEEEEEEcCCCCEEEEec--CCceEEEEcCcc
Confidence 764321000 01455999999999999999999 899999999864
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.2e-33 Score=248.54 Aligned_cols=250 Identities=19% Similarity=0.353 Sum_probs=192.3
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-- 77 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 77 (262)
+.|++|..|+ +.+.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.+... ...+.+|...+.
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~--------~~~~~~~~~~v~~~ 705 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--------VHTYDEHSEQVNCC 705 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCEEEE
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--------EEEEcCCCCcEEEE
Confidence 3688888886 5667888999999999999999999999999999999999876432 222222222221
Q ss_pred ---------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee----
Q 042146 78 ---------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---- 138 (262)
Q Consensus 78 ---------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---- 138 (262)
..+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++....+
T Consensus 706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp EECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred EEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence 2237999999999999999999999999999999999999999999999999876543322
Q ss_pred ---------------------------------------------------ecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 139 ---------------------------------------------------PAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 139 ---------------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
.+|...|.+++|+|+++++++++.||.|+
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 15778899999999999999999999999
Q ss_pred EEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCcee----------------------------
Q 042146 168 ILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKIL---------------------------- 199 (262)
Q Consensus 168 ~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------- 199 (262)
+||+.. ++++++++++.||.|++||+.+....
T Consensus 866 vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred EEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 999876 78899999999999999997532100
Q ss_pred -eEEeccCC------ceeEEEEEEecCCCeeEE----------------------ccccceEEEEEcCCCCeEEEeeecC
Q 042146 200 -KTYSGYTN------SKYCISSTFSVTNGKYIV----------------------SHRDPVISVASHPAKNIIASGALDN 250 (262)
Q Consensus 200 -~~~~~~~~------~~~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~p~~~~l~~~~~d~ 250 (262)
........ ........+++....++. +|...|.+++|+|++++|++++ .
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~ 1023 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS--E 1023 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC--S
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc--C
Confidence 00000000 011222333333333222 3888999999999999999999 8
Q ss_pred CCcEEEEeecc
Q 042146 251 DRTMKIWTQEK 261 (262)
Q Consensus 251 d~~i~iw~~~~ 261 (262)
||.|++|++..
T Consensus 1024 dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 1024 DSVIQVWNWQT 1034 (1249)
T ss_dssp SSBEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 99999999864
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-33 Score=238.53 Aligned_cols=189 Identities=25% Similarity=0.486 Sum_probs=162.7
Q ss_pred ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
+..+.+|.++|++++|+|++++|++|+.||.|++||+.. .+++.+..
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~---------------------------------~~~~~~~~ 48 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG---------------------------------ETHKLIDT 48 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET---------------------------------TEEEEEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC---------------------------------CCCcccee
Confidence 457889999999999999999999999999999997632 13455667
Q ss_pred cccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEccC--CCEEEEEeCCCeEEEE
Q 042146 96 LIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNRD--GTMIVTSSYDGLYRIL 169 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~ 169 (262)
+.+|...|.+++|+|+ ++++++|+.||.|++||+++++ .+..+..|..+|.+++|+|+ ++.+++++.||.|++|
T Consensus 49 l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vw 128 (753)
T 3jro_A 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128 (753)
T ss_dssp ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEE
Confidence 7889999999999987 9999999999999999999886 67778889999999999998 9999999999999999
Q ss_pred eCCC----------------------C-------------CccEEEEEcCCCeEEEEecCCCc----eeeEEeccCCcee
Q 042146 170 DAST----------------------P-------------NGKFILVGTLDNTLRLWNYSTRK----ILKTYSGYTNSKY 210 (262)
Q Consensus 170 d~~~----------------------~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~ 210 (262)
|++. | ++.++++|+.||.|++||++++. +...+.+
T Consensus 129 dl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~------ 202 (753)
T 3jro_A 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------ 202 (753)
T ss_dssp ECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC------
T ss_pred EeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC------
Confidence 9876 4 58899999999999999998773 3344444
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCC---CCeEEEeeecCCCcEEEEeecc
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|..+|.+++|+|+ +.+|++++ .||.|++|++..
T Consensus 203 ----------------h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~ 238 (753)
T 3jro_A 203 ----------------HSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDN 238 (753)
T ss_dssp ----------------CSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESS
T ss_pred ----------------CCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCC
Confidence 8899999999999 89999999 899999999864
No 84
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=216.37 Aligned_cols=189 Identities=20% Similarity=0.241 Sum_probs=149.2
Q ss_pred CCCCceeeecc--ccc----ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146 2 SSDRSLESFRP--YTL----TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~~--~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262)
+.||+|+.|+. .+. ...+.+|.+.|++++|+|++++|++|+.|++|++||+++.... ..+.+|...
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~--------~~~~~h~~~ 171 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL--------SSYRAHAAQ 171 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------EEECCCSSC
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--------EEEcCcCCc
Confidence 46899888863 332 2345589999999999999999999999999999998764322 222222222
Q ss_pred cc----------------cceeEEEEecCCCccceecc--cCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeee
Q 042146 76 IS----------------DLATIRLWDVPTATSLKTLI--GHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLK 136 (262)
Q Consensus 76 v~----------------~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 136 (262)
+. ..+.|++||+++++....+. .+...+.+++|+| +++++++|+.||.|++||+++++++.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 21 23389999999998887764 4556799999999 56788999999999999999999999
Q ss_pred eeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC-------------------CCcc-EEEEEcCCCeEEEEecCC
Q 042146 137 VLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST-------------------PNGK-FILVGTLDNTLRLWNYST 195 (262)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-------------------~~~~-~l~~~~~dg~i~i~d~~~ 195 (262)
.+.+|...|++++|+|++ ++|++|+.|++|++||++. |+++ +|++++.|+.|++|++.+
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 999999999999999988 5799999999999999886 6665 577899999999999986
Q ss_pred Cce
Q 042146 196 RKI 198 (262)
Q Consensus 196 ~~~ 198 (262)
...
T Consensus 332 ~~~ 334 (344)
T 4gqb_B 332 EPL 334 (344)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=219.57 Aligned_cols=253 Identities=17% Similarity=0.311 Sum_probs=180.5
Q ss_pred CCCceeeeccc--c-----------cceecccCc------------CceEEEEEccCC--CeEEEecCCCeEEEeecCCC
Q 042146 3 SDRSLESFRPY--T-----------LTQTLNGHL------------RAVSYVKFSHDG--RLLTSSSAEKTLLTYSLSSI 55 (262)
Q Consensus 3 ~d~~i~~~~~~--~-----------~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~ 55 (262)
.||.|..|+.. + +...+.+|. ++|++++|+|++ .+|++++.|++|++|++...
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 57888888632 2 477888998 889999999998 79999999999999998652
Q ss_pred CCC----CCC----------CC--CCC---------------cc-ccCCcccccc--------------ceeEEEEecCC
Q 042146 56 SNF----DST----------PP--SPL---------------QK-FTGHEQGISD--------------LATIRLWDVPT 89 (262)
Q Consensus 56 ~~~----~~~----------~~--~~~---------------~~-~~~~~~~v~~--------------~~~i~v~d~~~ 89 (262)
... ... .. ... .. ..+|...+.. .+.|++||+++
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~ 207 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEI 207 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTE
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCC
Confidence 210 000 00 000 00 1223333322 33899999984
Q ss_pred -Cccce-------ecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCee----eeeeecCCC------------C
Q 042146 90 -ATSLK-------TLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKC----LKVLPAHSD------------P 144 (262)
Q Consensus 90 -~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~------------~ 144 (262)
++.+. .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++. +..+..|.. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 208 TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 33333 366899999999999998 9999999999999999998886 677877776 8
Q ss_pred eeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------------------CCccEEEEEcCCCeE
Q 042146 145 VTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------------------PNGKFILVGTLDNTL 188 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------------------~~~~~l~~~~~dg~i 188 (262)
|.+++|+|++++|++++. +.|++||++. |++++|++|+.||.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 999999999999999999 9999999874 467899999999999
Q ss_pred EEEecCCCceeeEEeccCCceeEEE------EEEec-CC-Cee---EEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 189 RLWNYSTRKILKTYSGYTNSKYCIS------STFSV-TN-GKY---IVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 189 ~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~-~~~---~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
++||+.+++.+ .+..+........ ..... .. ... ...+...|..++|+|++++||+++ .+ .+++|
T Consensus 367 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~--~~-~~~~~ 442 (447)
T 3dw8_B 367 RMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT--TN-NLYIF 442 (447)
T ss_dssp EEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC--SS-CEEEE
T ss_pred EEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe--cc-eeeee
Confidence 99999998776 3333321110000 00000 00 000 011456899999999999999997 44 58888
Q ss_pred eec
Q 042146 258 TQE 260 (262)
Q Consensus 258 ~~~ 260 (262)
.-+
T Consensus 443 ~~~ 445 (447)
T 3dw8_B 443 QDK 445 (447)
T ss_dssp ECC
T ss_pred ccc
Confidence 754
No 86
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=214.39 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=148.2
Q ss_pred EEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc--ccccceeEEEE---------ecCCCccceecc-
Q 042146 30 KFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ--GISDLATIRLW---------DVPTATSLKTLI- 97 (262)
Q Consensus 30 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~i~v~---------d~~~~~~~~~~~- 97 (262)
.+.+++.+|++|+.||+|++||++............+..+..+.. .....+.|++| +..+++.+..+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 344566677777777777777766533211111111111111111 00112255555 555555454443
Q ss_pred cCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146 98 GHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~- 173 (262)
.|...|.+++|+| +++++++++.||.|++||+++++.+.... .|...+.+++|+|++.+|++|+.||.|++||+++
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 6778899999999 99999999999999999999998876653 3556899999999999999999999999999876
Q ss_pred ---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce-
Q 042146 174 ---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV- 231 (262)
Q Consensus 174 ---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 231 (262)
|++.+|++++ ++.|++||+++++.+..+..+.. |...+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~-------------------~~~~~~ 262 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI-------------------PEFKTG 262 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------------------------C
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc-------------------cccccc
Confidence 7889999999 55999999999887665553221 22222
Q ss_pred -EEEEEcCCCCeEEEeeecC-CCcEEEEeecc
Q 042146 232 -ISVASHPAKNIIASGALDN-DRTMKIWTQEK 261 (262)
Q Consensus 232 -~~~~~~p~~~~l~~~~~d~-d~~i~iw~~~~ 261 (262)
.+++|+|++++|++++ . |+.|++|++++
T Consensus 263 ~~~~~~~~~g~~l~~~s--~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIAYS--NESNSLTIYKFDK 292 (343)
T ss_dssp CEEEEECTTSSEEEEEE--TTTTEEEEEEECT
T ss_pred ceEEEECCCCCEEEEec--CCCCcEEEEEEcc
Confidence 5799999999999988 6 89999999853
No 87
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3e-31 Score=205.80 Aligned_cols=218 Identities=21% Similarity=0.390 Sum_probs=175.5
Q ss_pred CCCCceeeecc-------cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 2 SSDRSLESFRP-------YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 2 s~d~~i~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
+.|++++.|+. ..++..+++|...|.+++|+|++++|++|+.|++|++||+.... ....+.+|..
T Consensus 37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~--------~~~~~~~h~~ 108 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKS 108 (319)
T ss_dssp ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEEECCSS
T ss_pred cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC--------eeEEEccCCC
Confidence 46899998863 23567889999999999999999999999999999999987543 2233444444
Q ss_pred ccccc---------------eeEEEEecCCCccceecccCCcceEEEEEeCC------CCEEEeecCCCeEEEEECCCCe
Q 042146 75 GISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ------SNRIVSDTFNETIRIWDIKTGK 133 (262)
Q Consensus 75 ~v~~~---------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~ 133 (262)
.+..+ +.|++||++ ++.+..+.+|...|.++++.|. +..+++++.|+.|++||+++.+
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence 44332 289999995 5677788899999999999984 4489999999999999999999
Q ss_pred eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecC
Q 042146 134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~ 194 (262)
....+.+|...|.+++|+|++++|++++.||.|++||++. |++.+|++++.+ .+++|++.
T Consensus 188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 9999999999999999999999999999999999999876 788888888754 59999999
Q ss_pred CCceeeEEeccCC------ceeEEEEEEecCCCeeEEcccc
Q 042146 195 TRKILKTYSGYTN------SKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 195 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
.+..+..+..+.. ......++|++....++.+..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp TEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred cCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 8877777654321 2234567777776666665433
No 88
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.3e-31 Score=212.92 Aligned_cols=231 Identities=28% Similarity=0.567 Sum_probs=186.2
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------ce
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------LA 80 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~ 80 (262)
+..+.+.+|.+.|.. ++++++++|++|+.||+|++||+.+... ...+.+|...+.. .+
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~~~~~~~~l~s~~~dg 179 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC--------LRTLVGHTGGVWSSQMRDNIIISGSTDR 179 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE--------EEECCCCSSCEEEEEEETTEEEEEETTS
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE--------EEEEcCCCCCEEEEEecCCEEEEEeCCC
Confidence 356778899987533 2555789999999999999999865432 2233344443322 22
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
.|++||+.+++.+..+.+|...|.+++++ ++.+++|+.||.|++||+++++.+..+..|...|.+++| ++++++++
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence 89999999999999999999999999996 678999999999999999999999999999999999999 68899999
Q ss_pred eCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE-------
Q 042146 161 SYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST------- 215 (262)
Q Consensus 161 ~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------- 215 (262)
+.||.|++||++. .++.++++|+.||.|++||+++++++..+.++...+.++...
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 335 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 335 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEE
T ss_pred cCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEE
Confidence 9999999999875 478899999999999999999999999998887766655421
Q ss_pred --------EecCCCeeE---Ec---cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 216 --------FSVTNGKYI---VS---HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 216 --------~~~~~~~~~---~~---~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+....+..+ .+ |...|.+++|+ +++|++++ .||.|++|++..
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~v~iwd~~~ 391 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--DDGTVKLWDLKT 391 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE--TTSEEEEEETTT
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe--CCCeEEEEECCC
Confidence 111111111 11 67789999996 58999999 899999999864
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-31 Score=214.23 Aligned_cols=234 Identities=17% Similarity=0.218 Sum_probs=178.4
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC------C--CCCCCCccccCC------c---ccc
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD------S--TPPSPLQKFTGH------E---QGI 76 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~------~--~~~~~~~~~~~~------~---~~v 76 (262)
...+.+.+|.++|++++|+| ++|++|+.||.|++|+++...... . .....+..+... . ..+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677889999999999999 799999999999999997654110 0 001111111111 1 111
Q ss_pred ---ccceeEEEEecCCCcc-----ceecccC-----CcceEEEEEe----CCCCE-EEeecCCCeEEEEECCC------C
Q 042146 77 ---SDLATIRLWDVPTATS-----LKTLIGH-----TNYVFCINFN----PQSNR-IVSDTFNETIRIWDIKT------G 132 (262)
Q Consensus 77 ---~~~~~i~v~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~------~ 132 (262)
...+.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+++ +
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 1233899999998887 7888888 5899999999 99999 99999999999999998 6
Q ss_pred eeee-----ee-------ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------C
Q 042146 133 KCLK-----VL-------PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------P 174 (262)
Q Consensus 133 ~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~ 174 (262)
+.+. .+ ..|...|.+++|+|++ +|++++.||.|++||++. +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 6665 66 4488999999999999 999999999999999763 5
Q ss_pred CccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146 175 NGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND 251 (262)
Q Consensus 175 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d 251 (262)
++++|++++.| |.|++||+++++++..+............ ...|...|.+++|+|++++|++++ .|
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~--~d 312 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG---------EFAHSSWVMSLSFNDSGETLCSAG--WD 312 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C---------CBSBSSCEEEEEECSSSSEEEEEE--TT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc---------ccccCCcEEEEEECCCCCEEEEEe--CC
Confidence 68899999999 99999999999888887652110000000 001778999999999999999999 89
Q ss_pred CcEEEEeecc
Q 042146 252 RTMKIWTQEK 261 (262)
Q Consensus 252 ~~i~iw~~~~ 261 (262)
|.|++|++..
T Consensus 313 g~i~iwd~~~ 322 (397)
T 1sq9_A 313 GKLRFWDVKT 322 (397)
T ss_dssp SEEEEEETTT
T ss_pred CeEEEEEcCC
Confidence 9999999864
No 90
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-31 Score=223.77 Aligned_cols=255 Identities=16% Similarity=0.218 Sum_probs=201.4
Q ss_pred CCCceeeecc----------cccceecccCcCceEEEEEccCCCeEEEecCC----CeEEEeecCCCCCCCCCCCCCCcc
Q 042146 3 SDRSLESFRP----------YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE----KTLLTYSLSSISNFDSTPPSPLQK 68 (262)
Q Consensus 3 ~d~~i~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~ 68 (262)
.|+++..|+. .+....+..|..+|.+++|+|++++|++++.+ +.|++||.......-......+..
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA 165 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEE
Confidence 5788888864 26777888999999999999999999999988 799999843211100111111111
Q ss_pred ccCCccc---c---ccceeEEEEecCCCccceecccCCc---ceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeee
Q 042146 69 FTGHEQG---I---SDLATIRLWDVPTATSLKTLIGHTN---YVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 69 ~~~~~~~---v---~~~~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (262)
+...... + ...+.|++||+.+++.+..+..|.. .|.+++|+|+ ++++++++.||.|++||+++++.+..+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 1111111 1 1223899999999999999999999 9999999999 999999999999999999999999888
Q ss_pred -e---cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEE
Q 042146 139 -P---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 139 -~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~ 191 (262)
. .|..+|.+++|+ ++++|++++.|+.|++||++. ++++++++++.+|.|++|
T Consensus 246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324 (615)
T ss_dssp CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence 6 899999999999 999999999999999999886 267899999999999999
Q ss_pred ecCCCceeeEEeccCCceeEEEE---EEecCCCee--------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 192 NYSTRKILKTYSGYTNSKYCISS---TFSVTNGKY--------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|+.+++++..+.+|...+.++.. .....++.+ ..+|...|.+++| +++..|++++ .|+.|++|++.
T Consensus 325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~--~d~~i~~~~~~ 401 (615)
T 1pgu_A 325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS--WDDTLKVNGIT 401 (615)
T ss_dssp ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE--TTTEEEETTEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe--CCCCEEEEEcc
Confidence 99999999999998887777654 000111111 1347889999999 6678888998 89999999986
Q ss_pred c
Q 042146 261 K 261 (262)
Q Consensus 261 ~ 261 (262)
.
T Consensus 402 ~ 402 (615)
T 1pgu_A 402 K 402 (615)
T ss_dssp E
T ss_pred c
Confidence 4
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-31 Score=221.78 Aligned_cols=234 Identities=18% Similarity=0.233 Sum_probs=186.2
Q ss_pred CCceeeec--cc----ccceecccCcCc-eEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 4 DRSLESFR--PY----TLTQTLNGHLRA-VSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 4 d~~i~~~~--~~----~~~~~~~~h~~~-v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
|+.+..|+ .. +....+.+|.+. |++++|+| ++++|++++.||.|++||+................+..+..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 55666665 44 678889999999 99999999 99999999999999999995320000000011111222222
Q ss_pred ccccc-------------------eeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCee
Q 042146 75 GISDL-------------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKC 134 (262)
Q Consensus 75 ~v~~~-------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~ 134 (262)
.+..+ ..|.+|| .++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++++.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence 22111 3567777 6778888999999999999999998 799999999999999999999
Q ss_pred eeeeecCCC---CeeeEEEccC-CCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCe
Q 042146 135 LKVLPAHSD---PVTAIDFNRD-GTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNT 187 (262)
Q Consensus 135 ~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~ 187 (262)
+..+..|.. .|.+++|+|+ +++|++++.||.|++||++. .++++|++++.||.
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCc
Confidence 999999999 9999999999 99999999999999999764 15778999999999
Q ss_pred EEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 188 LRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 188 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|++||+++++.+..+..+... +...+.++.|. ++.++++++ .||.|++|++.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~-~~~~l~~~~--~~g~i~~~d~~ 327 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQ------------------LGNQQVGVVAT-GNGRIISLS--LDGTLNFYELG 327 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTC------------------GGGCEEEEEEE-ETTEEEEEE--TTSCEEEEETT
T ss_pred EEEEECCCCcEEEEEcCCCCc------------------ccCceeEEEeC-CCCeEEEEE--CCCCEEEEECC
Confidence 999999999999888764321 35677788885 888888888 88999999875
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.3e-31 Score=230.15 Aligned_cols=226 Identities=24% Similarity=0.392 Sum_probs=188.6
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--- 77 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 77 (262)
.||+|..|+ ..+.+..+.+|.++|++++|+|++++|++++.||.|++||+.+... ...+.+|...+.
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--------VVDFEAHPDYIRSIA 104 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCEEEEE
T ss_pred CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEecCCCCEEEEE
Confidence 578888885 5668889999999999999999999999999999999999875432 122222222222
Q ss_pred ------------cceeEEEEecCCC-ccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCC-
Q 042146 78 ------------DLATIRLWDVPTA-TSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS- 142 (262)
Q Consensus 78 ------------~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~- 142 (262)
..+.|++||+.++ .....+.+|...|.+++|+| +++.+++++.||.|++||+++++....+..+.
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 2238999999886 56677888999999999999 88999999999999999999888777776655
Q ss_pred CCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146 143 DPVTAIDFNR--DGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 143 ~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
..+.+++|+| ++.+|++++.||.|++||++. |+++++++++.||.|++||+.+++.+.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 8999999999 999999999999999999876 788999999999999999999999998
Q ss_pred EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC--eEEEeeecCCCcEEEEeecc
Q 042146 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN--IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+.. |...+.+++|+|++. +++++ .++.+.+|++..
T Consensus 265 ~~~~----------------------~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 302 (814)
T 3mkq_A 265 TLNV----------------------GLERSWCIATHPTGRKNYIASG---FDNGFTVLSLGN 302 (814)
T ss_dssp EECC----------------------SSSSEEEEEECTTCGGGEEEEE---ETTEEEEEECSC
T ss_pred Eeec----------------------CCCcEEEEEEccCCCceEEEEE---eCCCEEEEEcCC
Confidence 8876 778899999999987 35554 467788888653
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.3e-31 Score=212.79 Aligned_cols=201 Identities=28% Similarity=0.511 Sum_probs=171.7
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------ceeEEEEe
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------LATIRLWD 86 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~~i~v~d 86 (262)
.+|...|.|+++ ++++|++|+.||.|++||+.+... ...+.+|...+.+ .+.|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~--------~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC--------KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 199 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE--------EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE--------EEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEE
Confidence 456778999887 789999999999999999865332 2223333333322 23899999
Q ss_pred cCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee---eeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL---KVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
+.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+++++.. ..+.+|...|.+++| +++++++++.|
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 99999999999999999999997 469999999999999999987655 667789999999999 68899999999
Q ss_pred CeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 164 GLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 164 g~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
|.|++||+++ .+++++++|+.||.|++||+++++++..+.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------------------- 334 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG--------------------- 334 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC---------------------
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeC---------------------
Confidence 9999999887 3578999999999999999999999998887
Q ss_pred ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...|.+++| ++.+|++|+ .||.|++||+.
T Consensus 335 -h~~~v~~~~~--~~~~l~sg~--~dg~i~vwd~~ 364 (435)
T 1p22_A 335 -HEELVRCIRF--DNKRIVSGA--YDGKIKVWDLV 364 (435)
T ss_dssp -CSSCEEEEEC--CSSEEEEEE--TTSCEEEEEHH
T ss_pred -CcCcEEEEEe--cCCEEEEEe--CCCcEEEEECC
Confidence 8889999999 688999999 89999999975
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-32 Score=230.94 Aligned_cols=205 Identities=19% Similarity=0.308 Sum_probs=171.9
Q ss_pred CCCCceeeec----ccccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146 2 SSDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262)
+.||+|..|+ ..+....+.+|.++|++++|+|+ +++|++|+.||.|++||+.
T Consensus 28 ~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~---------------------- 85 (753)
T 3jro_A 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE---------------------- 85 (753)
T ss_dssp ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE----------------------
T ss_pred ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC----------------------
Confidence 3688888886 34677889999999999999988 9999999999999999653
Q ss_pred cccceeEEEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEE
Q 042146 76 ISDLATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAID 149 (262)
Q Consensus 76 v~~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~ 149 (262)
+++ .+..+..|...|.+++|+|+ ++++++|+.||.|++||++++. ....+..|...|.+++
T Consensus 86 -------------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 86 -------------NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp -------------TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred -------------CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 333 55667789999999999998 9999999999999999998773 3455678999999999
Q ss_pred Ecc-------------CCCEEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEE
Q 042146 150 FNR-------------DGTMIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLR 189 (262)
Q Consensus 150 ~~~-------------~~~~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~ 189 (262)
|+| ++..+++|+.||.|++||++. |+ ++++++|+.||.|+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence 999 589999999999999999764 67 89999999999999
Q ss_pred EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+||+++++......... ...|...|.+++|+|++++|++++ .||.|++|+++
T Consensus 233 iwd~~~~~~~~~~~~~~-----------------~~~~~~~v~~l~~spdg~~l~s~s--~Dg~I~vwd~~ 284 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLK-----------------EEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN 284 (753)
T ss_dssp EEEESSSSSCCBCCBSS-----------------SSCCSSCCCCEEECTTTCCEEEEC--SSSCEECCBCC
T ss_pred EecCCCCCCcceeEEec-----------------cCCCCCceEEEEEcCCCCEEEEEc--CCCEEEEEecC
Confidence 99999864221111000 001788999999999999999999 89999999986
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-31 Score=214.85 Aligned_cols=201 Identities=15% Similarity=0.303 Sum_probs=170.5
Q ss_pred CCCCceeeecc--c-------ccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146 2 SSDRSLESFRP--Y-------TLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~~--~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 71 (262)
+.|++|..|+. . +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~------------------- 161 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV------------------- 161 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET-------------------
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC-------------------
Confidence 36888888863 2 4578889999999999999998 69999999999888855
Q ss_pred CccccccceeEEEEecCCCccceec--ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCC-eee
Q 042146 72 HEQGISDLATIRLWDVPTATSLKTL--IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDP-VTA 147 (262)
Q Consensus 72 ~~~~v~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~ 147 (262)
.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.+
T Consensus 162 ----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 225 (402)
T 2aq5_A 162 ----------------GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVH 225 (402)
T ss_dssp ----------------TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCE
T ss_pred ----------------CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceE
Confidence 455666666 779999999999999999999999999999999999998888 678775 899
Q ss_pred EEEccCCCEEEEE---eCCCeEEEEeCCC----------------------CCccEEE-EEcCCCeEEEEecCCCce-ee
Q 042146 148 IDFNRDGTMIVTS---SYDGLYRILDAST----------------------PNGKFIL-VGTLDNTLRLWNYSTRKI-LK 200 (262)
Q Consensus 148 ~~~~~~~~~l~~~---~~dg~i~~~d~~~----------------------~~~~~l~-~~~~dg~i~i~d~~~~~~-~~ 200 (262)
+.|+|++.+|+++ +.|+.|++||++. +++++|+ +|+.||.|++||+.+++. +.
T Consensus 226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~ 305 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH 305 (402)
T ss_dssp EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEE
T ss_pred EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceE
Confidence 9999999999999 7999999999875 6778775 566899999999998874 55
Q ss_pred EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+..+. |..+|.+++|+|++.+++++ ++.+++|++..
T Consensus 306 ~l~~~~--------------------~~~~v~~~~~sp~~~~~~s~----~~~~~~~~l~~ 342 (402)
T 2aq5_A 306 YLSMFS--------------------SKESQRGMGYMPKRGLEVNK----CEIARFYKLHE 342 (402)
T ss_dssp EEEEEC--------------------CSSCCSEEEECCGGGSCGGG----TEEEEEEEEET
T ss_pred eecccc--------------------cCCcccceEEecccccceec----ceeEEEEEcCC
Confidence 555422 56899999999999988753 46999999864
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3e-31 Score=208.71 Aligned_cols=246 Identities=15% Similarity=0.181 Sum_probs=158.6
Q ss_pred ceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccccCCcccc----ccc
Q 042146 6 SLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKFTGHEQGI----SDL 79 (262)
Q Consensus 6 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~v----~~~ 79 (262)
.|+.+...+++..++.|..+|++++|+|++++|++|+.++ +++|+++......... ......+......+ ...
T Consensus 2 ~i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 2 PLGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred CcccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 4556666777778899999999999999999999998775 7899987543211100 11111111111111 111
Q ss_pred eeEEEEecCCCccceecccCCcceEEEEEeCCC-----------------------------------CEEEe--ecCCC
Q 042146 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-----------------------------------NRIVS--DTFNE 122 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~dg 122 (262)
..|++||..+++.+..+. +...|.+++++++. .+++. |+.+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g 159 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLG 159 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTT
T ss_pred cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCc
Confidence 289999998888877765 55678887777642 23333 68899
Q ss_pred eEEEEECCCCe----------------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCe-EEEEeCCC------------
Q 042146 123 TIRIWDIKTGK----------------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL-YRILDAST------------ 173 (262)
Q Consensus 123 ~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~d~~~------------ 173 (262)
.|++||+++++ .+..+.+|.++|++++|+|++++|++|+.|++ |++||+++
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h 239 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD 239 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 99999998765 26778899999999999999999999999998 99999875
Q ss_pred ----------CCccEEEEEcCCCeEEEEecCCCceee--EEec-----cCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146 174 ----------PNGKFILVGTLDNTLRLWNYSTRKILK--TYSG-----YTNSKYCISSTFSVTNGKYIVSHRDPVISVAS 236 (262)
Q Consensus 174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 236 (262)
|++++|++++.|+.|++||++.+.... .+.. +....+......... ....+...++|
T Consensus 240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~ 313 (355)
T 3vu4_A 240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV------DKHVRGCKIAW 313 (355)
T ss_dssp CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC------CTTCCCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc------CCCCCceEEEE
Confidence 789999999999999999998653221 1111 000111000000000 02334467999
Q ss_pred cCCCCeEEEeeecCCCcEEEEeecc
Q 042146 237 HPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 237 ~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+|+++.|++++ .||.+++|++..
T Consensus 314 ~~d~~~l~~~~--~dg~~~~~~~~~ 336 (355)
T 3vu4_A 314 ISESSLVVVWP--HTRMIETFKVVF 336 (355)
T ss_dssp SSSSEEEEEET--TTTEEEEEEEEE
T ss_pred eCCCCEEEEEe--CCCeEEEEEEEc
Confidence 99999999999 899999999753
No 97
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.5e-31 Score=201.95 Aligned_cols=193 Identities=19% Similarity=0.273 Sum_probs=150.8
Q ss_pred CCCCceeeecc----cccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccC
Q 042146 2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~ 71 (262)
+.|++++.|+. .+++.++.+|.++|.+++|+|+ +++|++|+.|++|++||++....... .....+..+..
T Consensus 28 s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~ 107 (297)
T 2pm7_B 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107 (297)
T ss_dssp ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE
T ss_pred eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe
Confidence 46899999963 3577899999999999999864 89999999999999999875421110 00111111111
Q ss_pred Cc---cc----cccceeEEEEecCCCcc--ceecccCCcceEEEEEeCC-------------CCEEEeecCCCeEEEEEC
Q 042146 72 HE---QG----ISDLATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQ-------------SNRIVSDTFNETIRIWDI 129 (262)
Q Consensus 72 ~~---~~----v~~~~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~vwd~ 129 (262)
+. .. ....+.|++||++++.. ...+.+|...|.+++|+|+ +++|++|+.|++|++||+
T Consensus 108 ~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 11 11 11233899999987642 3566789999999999996 579999999999999999
Q ss_pred CCCe----eeeeeecCCCCeeeEEEccCC---CEEEEEeCCCeEEEEeCCC-------------------------CCcc
Q 042146 130 KTGK----CLKVLPAHSDPVTAIDFNRDG---TMIVTSSYDGLYRILDAST-------------------------PNGK 177 (262)
Q Consensus 130 ~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~-------------------------~~~~ 177 (262)
++++ ....+.+|...|.+++|+|++ .+|++++.|++|++||++. |+++
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence 8765 566788999999999999984 7999999999999998642 6888
Q ss_pred EEEEEcCCCeEEEEecC
Q 042146 178 FILVGTLDNTLRLWNYS 194 (262)
Q Consensus 178 ~l~~~~~dg~i~i~d~~ 194 (262)
+|++++.||.|++|+..
T Consensus 268 ~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEETTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEC
Confidence 99999999999999976
No 98
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-31 Score=227.85 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=159.3
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
.+|.+.|++++|+|++++||+|+.||+|++|+... .+....+ .|
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-----------------------------------~~~~~~~-~~ 57 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-----------------------------------VEVVIKL-ED 57 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT-----------------------------------CEEEEEC-SS
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC-----------------------------------cEEEEEc-CC
Confidence 48999999999999999999999999999996532 2222222 36
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------ 173 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 173 (262)
...|.+++|+| +++|++++.|++|++||+++++++..+. |...|++++|+|++++|++|+.||.|++||++.
T Consensus 58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp CCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 78899999999 8899999999999999999999888886 778999999999999999999999999999753
Q ss_pred -------------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 174 -------------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 174 -------------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
| ++..+++|+.||.| +||+++++++..+..+...... ...........|
T Consensus 136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~h 210 (902)
T 2oaj_A 136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP----GGDFSEKTNEKR 210 (902)
T ss_dssp EECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC----CSTTCCCTTSCB
T ss_pred eeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC----Cccccccccccc
Confidence 2 34689999999999 9999999998888764110000 000000001125
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...|.+++|+|++.+|++++ .||.|++||+++
T Consensus 211 ~~~V~~v~fspdg~~lasgs--~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIH--EDNSLVFWDANS 242 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEE--TTCCEEEEETTT
T ss_pred CCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCC
Confidence 67899999999999999999 999999999854
No 99
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-31 Score=208.60 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=149.7
Q ss_pred CCCCceeeecc--cc----cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccc--cC
Q 042146 2 SSDRSLESFRP--YT----LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKF--TG 71 (262)
Q Consensus 2 s~d~~i~~~~~--~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~--~~ 71 (262)
+.|++|+.|+. .+ ......+|...|++++|+|++++|++|+.|++|++||+.......... ...+..+ ..
T Consensus 112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 36888888863 22 223345899999999999999999999999999999987643221111 1111111 11
Q ss_pred Cccc-c---ccceeEEEEecCCCccceec--ccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146 72 HEQG-I---SDLATIRLWDVPTATSLKTL--IGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144 (262)
Q Consensus 72 ~~~~-v---~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (262)
.... + ...+.|++||+++++....+ ..+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+..|...
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence 1111 1 12238999999998877654 456778999999996 568899999999999999999999999999999
Q ss_pred eeeEEEccCC-CEEEEEeCCCeEEEEeCCC-------------------C-CccEEEEEcCCCeEEEEecCCC
Q 042146 145 VTAIDFNRDG-TMIVTSSYDGLYRILDAST-------------------P-NGKFILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 145 v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-------------------~-~~~~l~~~~~dg~i~i~d~~~~ 196 (262)
|++++|+|++ ++|++++.|++|++||++. | ++.+|++++.||.|++|++...
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999987 5799999999999999886 5 7889999999999999999754
No 100
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.7e-30 Score=199.26 Aligned_cols=216 Identities=23% Similarity=0.421 Sum_probs=164.2
Q ss_pred CCCCceeeeccc---------ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCC
Q 042146 2 SSDRSLESFRPY---------TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72 (262)
Q Consensus 2 s~d~~i~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 72 (262)
+.|++|+.|+.. .+...+.+|..+|.+++|+|++.+|++|+.|++|++||+..... ...+.+|
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~--------~~~~~~h 117 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT--------YKRFVGH 117 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE--------EEEEECC
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--------EEEEcCC
Confidence 468999998742 35667899999999999999999999999999999999875432 2233344
Q ss_pred ccccccc---------------eeEEEEecCCCccce--ecccCCcceEEEEEeCCC----------CEEEeecCCCeEE
Q 042146 73 EQGISDL---------------ATIRLWDVPTATSLK--TLIGHTNYVFCINFNPQS----------NRIVSDTFNETIR 125 (262)
Q Consensus 73 ~~~v~~~---------------~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~ 125 (262)
...+..+ +.|++||+....... ....|...|.+++|+|++ .++++++.||.|+
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 4333322 289999997432222 223788999999999986 7899999999999
Q ss_pred EEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCC
Q 042146 126 IWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLD 185 (262)
Q Consensus 126 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~d 185 (262)
+|| ...+....+.+|...|.+++|+|++++|++++.||.|++||++. |++.+++++ .|
T Consensus 198 iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d 275 (343)
T 2xzm_R 198 VWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TD 275 (343)
T ss_dssp EEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ES
T ss_pred EEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CC
Confidence 999 45667778889999999999999999999999999999999843 677776655 57
Q ss_pred CeEEEEecCCCceee--EEe-----------ccCCceeEEEEEEecCCCeeEEcccc
Q 042146 186 NTLRLWNYSTRKILK--TYS-----------GYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 186 g~i~i~d~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
+.|++||+.+++... .+. +|.. ....+.|++....++.+..+
T Consensus 276 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~D 330 (343)
T 2xzm_R 276 QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKKLFAGFTD 330 (343)
T ss_dssp SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCCEEEEETT
T ss_pred CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCeEEEecCC
Confidence 789999998876544 333 2222 34556777666666655433
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=204.03 Aligned_cols=197 Identities=19% Similarity=0.273 Sum_probs=146.7
Q ss_pred CCCCceeeecc---cc-cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 2 SSDRSLESFRP---YT-LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 2 s~d~~i~~~~~---~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
+.|+.|..|+. .. ....+.+|.++|++++|+|++++|++++.||.|++||+..
T Consensus 61 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~----------------------- 117 (368)
T 3mmy_A 61 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS----------------------- 117 (368)
T ss_dssp ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-----------------------
Confidence 35888888863 22 3378889999999999999999999999999999986643
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEE--eCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-------------
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINF--NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS------------- 142 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------- 142 (262)
++.+. +..|...|.+++| +|++++|++++.||.|++||+++++++..+..+.
T Consensus 118 ------------~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 118 ------------NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184 (368)
T ss_dssp ------------TEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred ------------CCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence 33332 4568999999999 8899999999999999999999888777665443
Q ss_pred ----------------------------CCeeeEEEccCCCE----EEEEeCCCeEEEEeCCC-----------------
Q 042146 143 ----------------------------DPVTAIDFNRDGTM----IVTSSYDGLYRILDAST----------------- 173 (262)
Q Consensus 143 ----------------------------~~v~~~~~~~~~~~----l~~~~~dg~i~~~d~~~----------------- 173 (262)
..+.++.+.++... +++++.||.|++||++.
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 22333333333322 66666666666666543
Q ss_pred ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146 174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA 235 (262)
Q Consensus 174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 235 (262)
|++++|++|+.||.|++||+++++++..+.. |..+|.+++
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~v~~~~ 322 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ----------------------LDQPISACC 322 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC----------------------CSSCEEEEE
T ss_pred ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC----------------------CCCCceEEE
Confidence 4556666666666666666666666666554 888999999
Q ss_pred EcCCCCeEEEeeecCCCcEEEEe
Q 042146 236 SHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 236 ~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
|+|++++|++++ .|+..+.|+
T Consensus 323 ~s~~g~~l~~~s--~d~~~~~~~ 343 (368)
T 3mmy_A 323 FNHNGNIFAYAS--SYDWSKGHE 343 (368)
T ss_dssp ECTTSSCEEEEE--CCCSTTCGG
T ss_pred ECCCCCeEEEEe--ccccccccc
Confidence 999999999999 776555444
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.1e-30 Score=199.57 Aligned_cols=223 Identities=17% Similarity=0.178 Sum_probs=175.8
Q ss_pred CCCCceeeecc--cc---cceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeec-CCCCCCCCC---CCCCCccccC
Q 042146 2 SSDRSLESFRP--YT---LTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSL-SSISNFDST---PPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~~--~~---~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~-~~~~~~~~~---~~~~~~~~~~ 71 (262)
+.|++|..|+. .. ....+.+|..+|.+++|+|+++ +|++|+.||.|++||+ ......... ....+..+..
T Consensus 30 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 30 SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK 109 (342)
T ss_dssp ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE
T ss_pred cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEe
Confidence 36888888863 22 2456668999999999999999 9999999999999998 664321111 1111111111
Q ss_pred C-cccc---ccceeEEEEecCC---------CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-Ce--ee
Q 042146 72 H-EQGI---SDLATIRLWDVPT---------ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GK--CL 135 (262)
Q Consensus 72 ~-~~~v---~~~~~i~v~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~--~~ 135 (262)
. ...+ ...+.|++||+.+ ++++..+. |...|.+++|+|++ +++++.|+.|++||+++ +. ..
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~ 186 (342)
T 1yfq_A 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE
T ss_pred CCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce
Confidence 1 1111 1223899999987 77777776 88999999999887 89999999999999988 44 23
Q ss_pred eeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC-----------------------------------CCccEE
Q 042146 136 KVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST-----------------------------------PNGKFI 179 (262)
Q Consensus 136 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~-----------------------------------~~~~~l 179 (262)
.....|...+.+++|+| +++++++++.||.|++|+++. |++++|
T Consensus 187 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 266 (342)
T 1yfq_A 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence 34456788999999999 999999999999999988631 578899
Q ss_pred EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc-ccceEEEEEcCCCCeEEEeeecCCCc
Q 042146 180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH-RDPVISVASHPAKNIIASGALDNDRT 253 (262)
Q Consensus 180 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~d~~ 253 (262)
++++.||.|++||+++++++..+.. | ..+|.+++ |++++|++++ .||.
T Consensus 267 ~~~~~dg~i~vwd~~~~~~~~~~~~----------------------~h~~~v~~~~--~~~~~l~s~s--~Dg~ 315 (342)
T 1yfq_A 267 YTAGSDGIISCWNLQTRKKIKNFAK----------------------FNEDSVVKIA--CSDNILCLAT--SDDT 315 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCC----------------------CSSSEEEEEE--ECSSEEEEEE--ECTH
T ss_pred EEecCCceEEEEcCccHhHhhhhhc----------------------ccCCCceEec--CCCCeEEEEe--cCCc
Confidence 9999999999999999999988876 6 88999999 9999999999 7888
No 103
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9.8e-30 Score=203.31 Aligned_cols=214 Identities=20% Similarity=0.335 Sum_probs=167.2
Q ss_pred cCcCc--eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC---CCCCCccccCC--cccc---ccceeEEEEecCCC
Q 042146 21 GHLRA--VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST---PPSPLQKFTGH--EQGI---SDLATIRLWDVPTA 90 (262)
Q Consensus 21 ~h~~~--v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~--~~~v---~~~~~i~v~d~~~~ 90 (262)
+|... +.+++|++ ..+++++.|+.|++||+......... ....+..+... ...+ ...+.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 55554 44466654 56888999999999998764322111 11111111111 1111 12338999999999
Q ss_pred ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC-CCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK-TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
+.+..+.+|...|.+++|+ ++++++++.||.|++||++ ....+..+..|.+.|.+++|+|++++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 9999999999999999995 6799999999999999998 566788888999999999999999999999999999999
Q ss_pred eCCC--------------------CCc-cEEEEEc--CCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146 170 DAST--------------------PNG-KFILVGT--LDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 170 d~~~--------------------~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
|++. |++ .++++++ .|+.|++||+++++++..+.
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----------------------- 301 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----------------------- 301 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-----------------------
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----------------------
Confidence 9986 544 5666654 79999999999999888876
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+...|.+++|+|+++.|++++...||.|++|++..
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 66789999999999999994321699999999864
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-29 Score=203.41 Aligned_cols=217 Identities=13% Similarity=0.154 Sum_probs=163.6
Q ss_pred cCcCceEEEEEccCCCeE-EEecCCCeEEEeecC--CCCCCCCC----CCCCCccc--cCCccccc---cceeEEEEecC
Q 042146 21 GHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLS--SISNFDST----PPSPLQKF--TGHEQGIS---DLATIRLWDVP 88 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~----~~~~~~~~--~~~~~~v~---~~~~i~v~d~~ 88 (262)
+|.+.|++++|+|++++| ++++.||.|++||+. ........ ....+..+ ......+. ..+.+++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 456689999999999996 899999999999987 43221111 01111111 11111111 12269999998
Q ss_pred CCccce----ecccCCcceEEEEEeCC---CCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEE
Q 042146 89 TATSLK----TLIGHTNYVFCINFNPQ---SNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 89 ~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 160 (262)
+++... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|+++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 877554 77889999999999999 99999999999999999999888777 56899999999999 99999999
Q ss_pred eCCCeEEEEeCCC---------------------------------------------CCccEEEEEc-CCCeEEEEec-
Q 042146 161 SYDGLYRILDAST---------------------------------------------PNGKFILVGT-LDNTLRLWNY- 193 (262)
Q Consensus 161 ~~dg~i~~~d~~~---------------------------------------------~~~~~l~~~~-~dg~i~i~d~- 193 (262)
+.|+.|++||++. +++++|++++ .++.|++|++
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence 9999999999876 1377888888 8999999999
Q ss_pred -CCC---ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec----CCCcEEEEeecc
Q 042146 194 -STR---KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD----NDRTMKIWTQEK 261 (262)
Q Consensus 194 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~d~~i~iw~~~~ 261 (262)
..+ +.+..+.. | ..|.+++|+|++.++++++.+ .+..|++|.++.
T Consensus 339 ~~~~~~l~~~~~~~~----------------------~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 339 EKQKGDLALKQIITF----------------------P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSSTTCEEEEEEEEC----------------------S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred cCCCCceeeccEecc----------------------C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 555 55555554 5 789999999965444444310 145689998753
No 105
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.8e-30 Score=199.34 Aligned_cols=193 Identities=24% Similarity=0.281 Sum_probs=149.2
Q ss_pred CCCCceeeeccc----ccceecccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCC----CCCCCCCccccC
Q 042146 2 SSDRSLESFRPY----TLTQTLNGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFD----STPPSPLQKFTG 71 (262)
Q Consensus 2 s~d~~i~~~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~ 71 (262)
+.|++++.|+.. ..+..+.+|.++|.+++|+| ++++|++|+.|++|++||++...... ......+..+..
T Consensus 32 s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~ 111 (316)
T 3bg1_A 32 SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW 111 (316)
T ss_dssp ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEE
T ss_pred eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEE
Confidence 468999998732 25678899999999999986 48999999999999999987532100 001111111111
Q ss_pred Cc---cc-c---ccceeEEEEecCCCcc---ceecccCCcceEEEEEeCC-----------------CCEEEeecCCCeE
Q 042146 72 HE---QG-I---SDLATIRLWDVPTATS---LKTLIGHTNYVFCINFNPQ-----------------SNRIVSDTFNETI 124 (262)
Q Consensus 72 ~~---~~-v---~~~~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i 124 (262)
+. .. + ...+.|++||+..+.. ...+.+|...|.+++|+|+ +++|++|+.|+.|
T Consensus 112 ~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v 191 (316)
T 3bg1_A 112 APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 191 (316)
T ss_dssp CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBC
T ss_pred CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeE
Confidence 11 11 1 1233899999987632 4556789999999999997 4789999999999
Q ss_pred EEEECCCC---eeeeeeecCCCCeeeEEEccCC----CEEEEEeCCCeEEEEeCCC------------------------
Q 042146 125 RIWDIKTG---KCLKVLPAHSDPVTAIDFNRDG----TMIVTSSYDGLYRILDAST------------------------ 173 (262)
Q Consensus 125 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~~d~~~------------------------ 173 (262)
++||++.. +++..+.+|...|.+++|+|++ .+|++++.|++|++||+..
T Consensus 192 ~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s 271 (316)
T 3bg1_A 192 KLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 271 (316)
T ss_dssp CEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC
T ss_pred EEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc
Confidence 99999755 4677788999999999999986 7899999999999998642
Q ss_pred CCccEEEEEcCCCeEEEEecC
Q 042146 174 PNGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~ 194 (262)
|++++|++++.|+.|++|+..
T Consensus 272 p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 272 ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEEEC
Confidence 788999999999999999976
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=8.9e-30 Score=205.65 Aligned_cols=226 Identities=17% Similarity=0.207 Sum_probs=162.1
Q ss_pred CCCCceeeecc--c--ccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCC--C--CCCCCCccc--c
Q 042146 2 SSDRSLESFRP--Y--TLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFD--S--TPPSPLQKF--T 70 (262)
Q Consensus 2 s~d~~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~--~--~~~~~~~~~--~ 70 (262)
+.||+|..|+. . .....+.+|.++|++++|+| ++++|++|+.||+|++||++...... . ........+ .
T Consensus 139 s~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (435)
T 4e54_B 139 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS 218 (435)
T ss_dssp ETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE
T ss_pred eCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC
Confidence 46899999863 2 23455678999999999998 68899999999999999987532110 0 001111111 1
Q ss_pred CCcccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeee---eecCCC
Q 042146 71 GHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKV---LPAHSD 143 (262)
Q Consensus 71 ~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~ 143 (262)
.....+ ...+.|++||++ ++.+..+.+|...|.+++|+|+++ ++++|+.|+.|++||+++.+.... ..+|..
T Consensus 219 ~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 297 (435)
T 4e54_B 219 ASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH 297 (435)
T ss_dssp TTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred CCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence 111111 123389999985 567778899999999999999876 688999999999999987654433 357899
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEc------------CC
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------PNGKFILVGT------------LD 185 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~------------~d 185 (262)
+|++++|+|++++|++++.||.|++||++. +++.+++++. .+
T Consensus 298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 999999999999999999999999999875 3445566553 33
Q ss_pred CeEEEEecCCCceeeEEec-cCCceeEEEEEEecCCCeeEEcccc
Q 042146 186 NTLRLWNYSTRKILKTYSG-YTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 186 g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
+.|++||..+++++..+.. |...+.++ ..|++....+..+..+
T Consensus 378 ~~i~iwd~~~g~~~~~l~~~~~~~v~s~-~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 378 RTIDVFDGNSGKMMCQLYDPESSGISSL-NEFNPMGDTLASAMGY 421 (435)
T ss_dssp CCEEEECSSSCCEEEEECCSSCCCCCCE-EEECTTSSCEEEECSS
T ss_pred CEEEEEECCCCcEEEEEeCCCCCcEEEE-EEECCCCCEEEEEcCC
Confidence 5799999999999888754 44444433 2355444444444433
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=198.23 Aligned_cols=259 Identities=17% Similarity=0.220 Sum_probs=180.4
Q ss_pred CCCceeeec----ccccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCC--CCC--CCCCCCCccccCC
Q 042146 3 SDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSIS--NFD--STPPSPLQKFTGH 72 (262)
Q Consensus 3 ~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~--~~~--~~~~~~~~~~~~~ 72 (262)
.|++|..|+ ..+....+.+|.++|++++|+|+ +++|++++.||.|++||+.... ... ......+..+..+
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 110 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 110 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC
Confidence 588888886 44677888999999999999987 9999999999999999987642 111 0111112222111
Q ss_pred cc----cc---ccceeEEEEecCCCc--cceecccCCcceEEEEEeC-------------CCCEEEeecCCCeEEEEECC
Q 042146 73 EQ----GI---SDLATIRLWDVPTAT--SLKTLIGHTNYVFCINFNP-------------QSNRIVSDTFNETIRIWDIK 130 (262)
Q Consensus 73 ~~----~v---~~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~vwd~~ 130 (262)
.. .+ ...+.|++||+.+.. ....+..|...|.+++|+| +++++++++.||.|++||++
T Consensus 111 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 190 (379)
T 3jrp_A 111 PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 190 (379)
T ss_dssp CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE
T ss_pred CCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec
Confidence 11 11 223389999998874 3345678999999999999 69999999999999999998
Q ss_pred CCe----eeeeeecCCCCeeeEEEccC---CCEEEEEeCCCeEEEEeCCC-------------------------CCccE
Q 042146 131 TGK----CLKVLPAHSDPVTAIDFNRD---GTMIVTSSYDGLYRILDAST-------------------------PNGKF 178 (262)
Q Consensus 131 ~~~----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~ 178 (262)
+++ ....+..|...|.+++|+|+ +++|++++.||.|++||++. |++++
T Consensus 191 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 191 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV 270 (379)
T ss_dssp TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred CCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE
Confidence 654 45667789999999999999 89999999999999999775 78999
Q ss_pred EEEEcCCCeEEEEecCCCceeeEEeccCC--------ceeEEE----------EEEecCCCeeEEc--------cccceE
Q 042146 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTN--------SKYCIS----------STFSVTNGKYIVS--------HRDPVI 232 (262)
Q Consensus 179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~~~~--------~~~~v~ 232 (262)
|++++.||.|++|++..+.....+..... ...... ..+.......... ...+..
T Consensus 271 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYT 350 (379)
T ss_dssp EEEEESSSSEEEEEEEETTEEEEEEEEC----------------CEEEC--------------CTHHHHHHHTTCCTTCC
T ss_pred EEEecCCCcEEEEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchhHHhhhhhccccCcce
Confidence 99999999999999985443322221100 000000 0111111100000 224566
Q ss_pred EEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146 233 SVASHPAKNIIASGALDNDRTMKIWTQEKE 262 (262)
Q Consensus 233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~ 262 (262)
...|+|++.+|+.... ....|+.+.+..|
T Consensus 351 ~~~fs~~g~~l~~~~~-~~~~~~~~~~~~~ 379 (379)
T 3jrp_A 351 FAKFSTGSMLLTKDIV-GKSGVSIKRLPTE 379 (379)
T ss_dssp CEEEETTTEEEEECTT-SSSSEEEEECCCC
T ss_pred eeEECCCCeEeeeccc-ccccEEEEeccCC
Confidence 7889999999877752 2334888887654
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=205.36 Aligned_cols=197 Identities=10% Similarity=0.077 Sum_probs=154.7
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----eEEEEecCCCccce
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-----TIRLWDVPTATSLK 94 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~i~v~d~~~~~~~~ 94 (262)
+.-...|.+++|+|||+++|+++.|++|+ |..... .+.+|...+..++ .++.|++.+++...
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----------~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----------DINCNSKNLFHVKEFPLEFENKLDFELAQQNG 78 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----------CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc-----------eecCCCccEEEEEECCCCCcceEEEEeCCCce
Confidence 34568899999999999999999999999 533221 1134555444432 45666666555433
Q ss_pred ecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-----CeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 95 TLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-----PVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 95 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
.+. .|...|.+++|+|+|.+||+++.||.|++||.+. ++..+. |.. .+.+++|||+|++|++|+.||+|++
T Consensus 79 ~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 333 4588899999999999999999999999999544 566666 665 4999999999999999999999999
Q ss_pred EeCCC-------------------------------CCccEEEEEcCCCeEEEEecCCCce---eeEEe-ccCCceeEEE
Q 042146 169 LDAST-------------------------------PNGKFILVGTLDNTLRLWNYSTRKI---LKTYS-GYTNSKYCIS 213 (262)
Q Consensus 169 ~d~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~-~~~~~~~~~~ 213 (262)
||+.. |++ +++++.|+.|++||+..++. ..++. +
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~--------- 224 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA--------- 224 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC---------
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc---------
Confidence 99542 566 88889999999999988773 24453 3
Q ss_pred EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+ ++.||+++ ++.|++|++..
T Consensus 225 -------------h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~ 254 (588)
T 2j04_A 225 -------------SRRKITDLKIV--DYKVVLTC---PGYVHKIDLKN 254 (588)
T ss_dssp -------------CSSCCCCEEEE--TTEEEEEC---SSEEEEEETTT
T ss_pred -------------ccCcEEEEEEE--CCEEEEEe---CCeEEEEECCC
Confidence 77899999999 68899886 58999999864
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=203.43 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=140.6
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
.|...|.+++|||+|.+||+++.||.|++||.+ . .+..+. |.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-----------------------------------~--~l~~l~-~~ 124 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-----------------------------------K--MLTNLD-SK 124 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-----------------------------------E--EEEECC-CS
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-----------------------------------c--eeeecc-CC
Confidence 456778888888888888888888888777532 1 333344 44
Q ss_pred c-----ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-------eeeee----ecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146 101 N-----YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-------CLKVL----PAHSDPVTAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 101 ~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg 164 (262)
. .+.+++|+|+|++|++|+.||+|++||+.+++ .+..+ .+|...|.+++|+|+| +++++.|+
T Consensus 125 ~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~ 202 (588)
T 2j04_A 125 GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN 202 (588)
T ss_dssp SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC
T ss_pred CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC
Confidence 3 59999999999999999999999999999875 25665 5677899999999999 88999999
Q ss_pred eEEEEeCCC-------------CC---------ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 165 LYRILDAST-------------PN---------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 165 ~i~~~d~~~-------------~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
+|++||+.. .. ++.|++++ ++.|++||+.+++......+
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~g------------------ 263 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTG------------------ 263 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECS------------------
T ss_pred eEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcC------------------
Confidence 999999743 11 46788887 69999999998777443334
Q ss_pred eEEccccceEEEEE--cCCCCeEEEeeecCCCcEEEEeec
Q 042146 223 YIVSHRDPVISVAS--HPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 223 ~~~~~~~~v~~~~~--~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
|...|..++| +|++..|++++ +||+ ++|..+
T Consensus 264 ----h~~~V~~va~~~s~d~~~La~a~--edG~-klw~~d 296 (588)
T 2j04_A 264 ----SLENFHIIPLNHEKESTILLMSN--KTSY-KVLLED 296 (588)
T ss_dssp ----CCSCCCEEEETTCSSCEEEEECS--SCEE-EEEESS
T ss_pred ----CCceEEEEEeeeCCCCCEEEEEc--CCCC-EEEeec
Confidence 8899999999 99999999999 8999 999864
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.4e-28 Score=191.96 Aligned_cols=232 Identities=15% Similarity=0.177 Sum_probs=178.9
Q ss_pred CCCCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCC-CCCCcc--ccCCccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTP-PSPLQK--FTGHEQG 75 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~--~~~~~~~ 75 (262)
+.|++|+.|+ ..+.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+.+...... ...... +......
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~ 87 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ 87 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred CCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCE
Confidence 4688888886 456777777765 48999999999976 677799999999987643321111 111111 1111111
Q ss_pred cc----cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146 76 IS----DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 76 v~----~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 150 (262)
+. ....|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+ ..+.+++|
T Consensus 88 l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 165 (391)
T 1l0q_A 88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV 165 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEE
Confidence 11 1248999999999887777654 568999999999977 68888999999999999988888765 45699999
Q ss_pred ccCCCEE-EEEeCCCeEEEEeCCC-------------------CCccEEEEEc---CCCeEEEEecCCCceeeEEeccCC
Q 042146 151 NRDGTMI-VTSSYDGLYRILDAST-------------------PNGKFILVGT---LDNTLRLWNYSTRKILKTYSGYTN 207 (262)
Q Consensus 151 ~~~~~~l-~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~ 207 (262)
+|+++.+ ++++.++.|++||++. ++++++++++ .++.|++||+++++.+..+..
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--- 242 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--- 242 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---
Confidence 9999877 5677899999999876 7888888887 689999999999988887764
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE-EEeeecCCCcEEEEeecc
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII-ASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~d~~i~iw~~~~ 261 (262)
+ ..+.+++|+|+++.| ++++ .|+.|++||+..
T Consensus 243 -------------------~-~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~ 275 (391)
T 1l0q_A 243 -------------------G-PDPAGIAVTPDGKKVYVALS--FXNTVSVIDTAT 275 (391)
T ss_dssp -------------------C-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred -------------------C-CCccEEEEccCCCEEEEEcC--CCCEEEEEECCC
Confidence 3 357899999999977 5556 799999999863
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=192.69 Aligned_cols=194 Identities=10% Similarity=0.093 Sum_probs=150.9
Q ss_pred CCCCceeeeccc-----------ccceec-ccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCc
Q 042146 2 SSDRSLESFRPY-----------TLTQTL-NGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQ 67 (262)
Q Consensus 2 s~d~~i~~~~~~-----------~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~ 67 (262)
+.|+++..|... +.++.+ .+|.++|.+++|+| ++++|++++.||+|++||++
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-------------- 157 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-------------- 157 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS--------------
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC--------------
Confidence 468888888432 222233 36778999999999 99999999999999998664
Q ss_pred cccCCccccccceeEEEEecCCCccceec-ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee-eeeec-CCCC
Q 042146 68 KFTGHEQGISDLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL-KVLPA-HSDP 144 (262)
Q Consensus 68 ~~~~~~~~v~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~-~~~~ 144 (262)
+++..... ..+...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.++
T Consensus 158 ---------------------~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 158 ---------------------DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp ---------------------SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred ---------------------CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 33333333 235567999999999999999999999999999999877 77877 9999
Q ss_pred eeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcC-CCeEEEEecCCCce
Q 042146 145 VTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTL-DNTLRLWNYSTRKI 198 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~-dg~i~i~d~~~~~~ 198 (262)
|++++|+|++.+|++++ |+.|++||++. |++++|++++. |+.|++|++.....
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 99999999999999999 55999999876 56889999888 99999999976543
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcC---CCCeEEEeeecCCCcEEEEee
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP---AKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d~d~~i~iw~~ 259 (262)
.... .++..++|+| +...+++++ .|+.+.++-.
T Consensus 296 ~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~--~d~~~~~~~~ 331 (343)
T 3lrv_A 296 NWTK--------------------------DEESALCLQSDTADFTDMDVVC--GDGGIAAILK 331 (343)
T ss_dssp SEEE--------------------------EEEEECCC----CCCCEEEEEE--ETTEEEEEEE
T ss_pred ceEe--------------------------cCceeEecCccccccceeEEEe--cCCceEEEEe
Confidence 3222 2456777777 777788777 6777777643
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=7.1e-30 Score=203.55 Aligned_cols=203 Identities=15% Similarity=0.095 Sum_probs=135.0
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
..+....+++++.+|++++.|++|+|||.+... ......+..+.+|.+.|
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~------------------------------~~~~~~~~~~~gH~~~v 139 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNET------------------------------IITQHVLGGKSGHHNFV 139 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTE------------------------------EEEEEEECTTTSCSSCE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCc------------------------------cceeeeecccCCCCCce
Confidence 333344445566789999999999999764311 00112344678999999
Q ss_pred EEEEEeC--------CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC-
Q 042146 104 FCINFNP--------QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 104 ~~~~~~~--------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~- 173 (262)
++++|+| ++++|++|+.|++|+|||++++.++..+..|..++.+++|+|++ .+|++++.|++|++||++.
T Consensus 140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 9999998 78899999999999999999888888888899999999999977 4899999999999999865
Q ss_pred ---------------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146 174 ---------------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208 (262)
Q Consensus 174 ---------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 208 (262)
++++.+++++.|+.+++||+..++....+..+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~ 299 (393)
T 4gq1_A 220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK 299 (393)
T ss_dssp C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence 57889999999999999999998887777665443
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+...... ++.+....+...+..+.+.+. +.++++|+ .||.|++||+.+
T Consensus 300 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 300 LGPKNLL---PNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLIQLINTYE 348 (393)
T ss_dssp ----CCS---CSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEEEEEETTC
T ss_pred cccEEEc---cccccccccCcceeEEEccCCCCEEEEEEC--CCCEEEEEECCC
Confidence 3322111 111111122333333333333 44566677 799999999864
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.4e-28 Score=194.47 Aligned_cols=233 Identities=9% Similarity=0.136 Sum_probs=179.1
Q ss_pred CCCceeeecc--cccce-----ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCc--cccC
Q 042146 3 SDRSLESFRP--YTLTQ-----TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQ--KFTG 71 (262)
Q Consensus 3 ~d~~i~~~~~--~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~--~~~~ 71 (262)
.|++|..|+. .+..+ .+.+|.+.|.+++|+|+++++++++.|+.|++||++......... ..... .+..
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP 221 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET
T ss_pred CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC
Confidence 4677888863 34444 456899999999999999999999999999999987643221111 11111 1111
Q ss_pred Ccccc--c--cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec--------CCCeEEEEECCCCeeeeeee
Q 042146 72 HEQGI--S--DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT--------FNETIRIWDIKTGKCLKVLP 139 (262)
Q Consensus 72 ~~~~v--~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~ 139 (262)
....+ . ..+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++ .||.|++||+++++.+..+
T Consensus 222 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~- 299 (433)
T 3bws_A 222 IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI- 299 (433)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-
T ss_pred CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-
Confidence 11111 1 1238999999998887777654 4599999999999998887 5889999999999877766
Q ss_pred cCCCCeeeEEEccCCCE-EEEEeCCCeEEEEeCCC-------------------CCccEEEEEcC---------------
Q 042146 140 AHSDPVTAIDFNRDGTM-IVTSSYDGLYRILDAST-------------------PNGKFILVGTL--------------- 184 (262)
Q Consensus 140 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~--------------- 184 (262)
.|...+.+++|+|+++. +++++.++.|++||+.. ++++++++++.
T Consensus 300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 45668899999999975 56668999999999876 78888888776
Q ss_pred CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
||.|++||+.+++.+..+. +...+.+++|+|++++|++++. .|+.|++|+++.
T Consensus 380 dg~v~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~~-~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWE-----------------------AGNQPTGLDVSPDNRYLVISDF-LDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEEEEEEE-----------------------CSSSEEEEEECTTSCEEEEEET-TTTEEEEEEETT
T ss_pred ceEEEEEECCCCcEEEEec-----------------------CCCCCceEEEcCCCCEEEEEEC-CCCeEEEEEecC
Confidence 5799999999999888776 3456899999999999988872 399999999864
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-29 Score=217.07 Aligned_cols=215 Identities=14% Similarity=0.127 Sum_probs=159.8
Q ss_pred cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccc-----cCCccccccce-------------
Q 042146 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF-----TGHEQGISDLA------------- 80 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~------------- 80 (262)
+.+|...+.+++|+|++++|++|+.|++|++||+........ ......+ .+|...+..++
T Consensus 431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~ 508 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE 508 (902)
T ss_dssp CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT--BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC--ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence 445566666667789999999999999999999976532100 0000001 14444444333
Q ss_pred --eEEEEecCCCc---------------------------------------------cceecccCCcceEEEEEeCCCC
Q 042146 81 --TIRLWDVPTAT---------------------------------------------SLKTLIGHTNYVFCINFNPQSN 113 (262)
Q Consensus 81 --~i~v~d~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~ 113 (262)
+|++||+.+++ ++..+.+|.+.|++++|+|+|
T Consensus 509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG- 587 (902)
T 2oaj_A 509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG- 587 (902)
T ss_dssp TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence 89999997652 255677899999999999999
Q ss_pred EEEeecCCCeEEEEECCCCeeee-----eee-cCCCCeeeEEEc-----cCC---CEEEEEeCCCeEEEEeC---CC---
Q 042146 114 RIVSDTFNETIRIWDIKTGKCLK-----VLP-AHSDPVTAIDFN-----RDG---TMIVTSSYDGLYRILDA---ST--- 173 (262)
Q Consensus 114 ~l~~~~~dg~i~vwd~~~~~~~~-----~~~-~~~~~v~~~~~~-----~~~---~~l~~~~~dg~i~~~d~---~~--- 173 (262)
+||+|+.|++|++||+++...+. .+. +|...|++++|+ ||| .+|++++.|++|++||+ .+
T Consensus 588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 99999999999999998876653 233 789999999999 885 79999999999999997 21
Q ss_pred -------------------------------C-------------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146 174 -------------------------------P-------------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209 (262)
Q Consensus 174 -------------------------------~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 209 (262)
+ ...++++++ +..|+||++.++++.+....
T Consensus 668 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~----- 741 (902)
T 2oaj_A 668 DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFK----- 741 (902)
T ss_dssp EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECS-----
T ss_pred EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEcc-----
Confidence 0 122333333 77899999999988877644
Q ss_pred eEEEEEEecCCCeeEEccccceEEE---E------EcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISV---A------SHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~---~------~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...+.++ . |++++..|++.+ .||.|++|++..
T Consensus 742 -----------------~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~~g~i~~~s~p~ 783 (902)
T 2oaj_A 742 -----------------YPLAATGLSYISTVEKNNDRKNLTVIITLE--INGHLRVFTIPD 783 (902)
T ss_dssp -----------------SCEEEEEEEEEEEECSSSCEEEEEEEEEEE--TTSEEEEEETTT
T ss_pred -----------------cceeeeEEEEEEeccccccccCceEEEEEe--CCCcEEEEECcc
Confidence 33333443 5 788999999999 999999999863
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=197.36 Aligned_cols=213 Identities=15% Similarity=0.238 Sum_probs=152.4
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCC---CCCCCCCCCC----ccc--c-CCccccccc------------e
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS---NFDSTPPSPL----QKF--T-GHEQGISDL------------A 80 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~----~~~--~-~~~~~v~~~------------~ 80 (262)
..++.+++|+|+|++|+++ .++.|++||+.+.. .......... ... . ......... .
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4678999999999966665 57899999987654 1100000000 000 0 000000000 0
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECC--CCeeeeeee--cCCCCeeeEEEccCCC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIK--TGKCLKVLP--AHSDPVTAIDFNRDGT 155 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 155 (262)
.+.--.............|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 00000000001112234677789999999999996 899999999999999 888887775 5678999999999999
Q ss_pred EEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEEEEecCCCceeeEE-eccCC
Q 042146 156 MIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLRLWNYSTRKILKTY-SGYTN 207 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~ 207 (262)
+|++++.+|.+++|++.. |+ +++|++|+.|+.|++||+++++++..+ .+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--- 239 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG--- 239 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC---
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC---
Confidence 999999999999998643 67 889999999999999999998887764 34
Q ss_pred ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|...|.+++|+ ++.+|++++ .|+.|++||+..
T Consensus 240 -------------------h~~~v~~~~~s-d~~~l~s~~--~d~~v~vwd~~~ 271 (450)
T 2vdu_B 240 -------------------HKHFVSSICCG-KDYLLLSAG--GDDKIFAWDWKT 271 (450)
T ss_dssp -------------------CSSCEEEEEEC-STTEEEEEE--SSSEEEEEETTT
T ss_pred -------------------CCCceEEEEEC-CCCEEEEEe--CCCeEEEEECCC
Confidence 88999999999 999999999 899999999864
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.2e-26 Score=186.99 Aligned_cols=228 Identities=12% Similarity=0.153 Sum_probs=174.3
Q ss_pred ceeeecc--c--ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-----
Q 042146 6 SLESFRP--Y--TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI----- 76 (262)
Q Consensus 6 ~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v----- 76 (262)
.++.+++ . +.+..+..+ ..+.+++|+|++.++++++.++.|++||+.+......... ..+.+|...+
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~v~~~~~ 177 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---EKYKKKLGFVETISI 177 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC---HHHHTTCCEEEEEEE
T ss_pred EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc---ccccccCCceeEEEE
Confidence 5555543 2 455555554 4456999999888888899999999999876433211110 0111222111
Q ss_pred ----------ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146 77 ----------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPV 145 (262)
Q Consensus 77 ----------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 145 (262)
...+.|++||+.+++.+..+..|...+.+++|+|++++++ +++.++.|++||+++++.+..+.. ...+
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~ 256 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLP 256 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCc
Confidence 1123899999999999888888999999999999999874 566899999999999998888765 4568
Q ss_pred eeEEEccCCCEEEEEe--------CCCeEEEEeCCC-------------------CCcc-EEEEEcCCCeEEEEecCCCc
Q 042146 146 TAIDFNRDGTMIVTSS--------YDGLYRILDAST-------------------PNGK-FILVGTLDNTLRLWNYSTRK 197 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~--------~dg~i~~~d~~~-------------------~~~~-~l~~~~~dg~i~i~d~~~~~ 197 (262)
.+++|+|+++.+++++ .|+.|++||++. ++++ .+++++.++.|++||+.+++
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 9999999999999888 588999999876 6775 55667899999999999988
Q ss_pred eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC-------------CCcEEEEeecc
Q 042146 198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN-------------DRTMKIWTQEK 261 (262)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-------------d~~i~iw~~~~ 261 (262)
.+..+. +...+.+++|+|++++|++++.+. ||.|++||+..
T Consensus 337 ~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 337 VQKSIP-----------------------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEEEE-----------------------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEEec-----------------------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 887775 666789999999999988887211 57999999854
No 117
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=3e-27 Score=184.42 Aligned_cols=157 Identities=23% Similarity=0.478 Sum_probs=143.1
Q ss_pred eEEEEecCCCc-----cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 81 TIRLWDVPTAT-----SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 81 ~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
.|++||+.+.+ +...+.+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.
T Consensus 62 ~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T 4aow_A 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141 (340)
T ss_dssp CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence 89999997654 3456788999999999999999999999999999999999988888888889999999999999
Q ss_pred EEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146 156 MIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
+|++++.|+.+++||+.. +...++++++.|+.|++||+++++++..+.+
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-------- 213 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-------- 213 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC--------
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC--------
Confidence 999999999999999865 3456788999999999999999999988877
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
|..+|++++|+|++++|++++ .||.|++||+..
T Consensus 214 --------------h~~~v~~~~~s~~~~~l~s~s--~Dg~i~iwd~~~ 246 (340)
T 4aow_A 214 --------------HTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLNE 246 (340)
T ss_dssp --------------CSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTT
T ss_pred --------------CCCcEEEEEECCCCCEEEEEe--CCCeEEEEEecc
Confidence 888999999999999999999 899999999864
No 118
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=2.4e-26 Score=184.75 Aligned_cols=210 Identities=20% Similarity=0.349 Sum_probs=162.7
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCC--cccc---ccceeEEEEecCCCcccee
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGH--EQGI---SDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~--~~~v---~~~~~i~v~d~~~~~~~~~ 95 (262)
.++.|+||++ ++||+|. |++|+|||..+....... ....+..+... ...+ ...+.|++||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3677999975 5777765 999999998764322111 11111111111 1111 1223899999999999999
Q ss_pred cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146 96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~- 173 (262)
+.+|...+.+++++ +.++++|+.|+.+++||.+.. ..+..+.+|...+..+.++|+++++++++.|+.+++|+...
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998875 679999999999999998764 45677889999999999999999999999999999999865
Q ss_pred -----------------------C-CccEEEE--EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 174 -----------------------P-NGKFILV--GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 174 -----------------------~-~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
| +...+++ |+.|+.|++||+++++++..+. +
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-----------------------~ 319 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------------------A 319 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------------------C
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-----------------------c
Confidence 2 3445554 4689999999999999988887 5
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...+.++.|+|+++.+++++...|+.|+|||+.+
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 5678999999999998876533589999999864
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.8e-27 Score=189.96 Aligned_cols=194 Identities=21% Similarity=0.386 Sum_probs=154.0
Q ss_pred CCCCceeeecc------------cccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCcc
Q 042146 2 SSDRSLESFRP------------YTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK 68 (262)
Q Consensus 2 s~d~~i~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 68 (262)
+.||.|..|+- ......+.+|...|.+++|+|++. +|++|+.||.|++|++........ .......
T Consensus 148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~ 226 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-VIDAKNI 226 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-EEECSEE
T ss_pred CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-eecccee
Confidence 45788888852 467788899999999999999988 999999999999999976321000 0000111
Q ss_pred ccCCcccc----------------ccceeEEEEecCCC---ccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEE
Q 042146 69 FTGHEQGI----------------SDLATIRLWDVPTA---TSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWD 128 (262)
Q Consensus 69 ~~~~~~~v----------------~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd 128 (262)
+.+|...+ ...+.|++||++++ ..+..+..|...|++++|+|+++ ++++|+.||.|++||
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 11222111 12338999999987 56677788999999999999887 688999999999999
Q ss_pred CCC-CeeeeeeecCCCCeeeEEEccCCC-EEEEEeCCCeEEEEeCCC---------------------------------
Q 042146 129 IKT-GKCLKVLPAHSDPVTAIDFNRDGT-MIVTSSYDGLYRILDAST--------------------------------- 173 (262)
Q Consensus 129 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~--------------------------------- 173 (262)
+++ .+++..+..|...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 307 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp TTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred CCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 997 567888889999999999999885 699999999999999753
Q ss_pred -CCcc-EEEEEcCCCeEEEEecCCC
Q 042146 174 -PNGK-FILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 174 -~~~~-~l~~~~~dg~i~i~d~~~~ 196 (262)
++++ +|++++.||.|++|++...
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCCEEEEEECCCCEEEeEcccc
Confidence 5677 8999999999999998754
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=9e-26 Score=174.46 Aligned_cols=209 Identities=21% Similarity=0.336 Sum_probs=159.2
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCcccc--CCcccc---ccceeEEEEecCCCccceec
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFT--GHEQGI---SDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~--~~~~~v---~~~~~i~v~d~~~~~~~~~~ 96 (262)
.++|+||+++ +||+| .|++|+|||+++.+..... ....+..+. .....+ ...+.|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999986 67665 5999999998764322111 111111111 111111 12338999999999999999
Q ss_pred ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146 97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 173 (262)
.+|...+.++.+. +..+++++.++.+++|+.... ..+..+.+|...+..+.+++++++|++++.|+.|++||++.
T Consensus 106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 9999988876654 678999999999999998765 45667788999999999999999999999999999999875
Q ss_pred ----------------------CCc-c--EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146 174 ----------------------PNG-K--FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR 228 (262)
Q Consensus 174 ----------------------~~~-~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (262)
+.+ . .+++++.++.|++||.+......... +.
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-----------------------~~ 240 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------------------AH 240 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----------------------CS
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-----------------------ce
Confidence 222 2 33567788999999999887766655 77
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+..+.|+|++..+++++...|+.|++||+++
T Consensus 241 ~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred eeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 789999999999988776533689999999864
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=2e-26 Score=179.85 Aligned_cols=157 Identities=19% Similarity=0.394 Sum_probs=138.0
Q ss_pred eEEEEecCCCc----cceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC---------eeeeeeecCCCCe
Q 042146 81 TIRLWDVPTAT----SLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG---------KCLKVLPAHSDPV 145 (262)
Q Consensus 81 ~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v 145 (262)
.|++||+.++. ....+.+|...|.+++|+| ++++|++++.||.|++||++++ +++..+..|...|
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 113 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL 113 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE
T ss_pred eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCce
Confidence 79999998763 5566788999999999999 6999999999999999999876 5677888899999
Q ss_pred eeEEEccC--CCEEEEEeCCCeEEEEeCCC---------------------------------C---CccEEEEEcCCCe
Q 042146 146 TAIDFNRD--GTMIVTSSYDGLYRILDAST---------------------------------P---NGKFILVGTLDNT 187 (262)
Q Consensus 146 ~~~~~~~~--~~~l~~~~~dg~i~~~d~~~---------------------------------~---~~~~l~~~~~dg~ 187 (262)
.+++|+|+ +++|++++.||.|++||++. | ++.++++++.++.
T Consensus 114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 193 (351)
T 3f3f_A 114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193 (351)
T ss_dssp EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence 99999999 99999999999999999875 1 3889999999999
Q ss_pred EEEEecCCCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC----CeEEEeeecCCCcEEEEeecc
Q 042146 188 LRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK----NIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 188 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.+|+...++. +..+.+ |...|++++|+|++ .+|++++ .||.|++|++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~----------------------h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~~ 249 (351)
T 3f3f_A 194 IIYQRGKDGKLHVAAKLPG----------------------HKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKITE 249 (351)
T ss_dssp EEEEECTTSCEEEEEECCC----------------------CCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEEE
T ss_pred EEEEccCCCceeeeeecCC----------------------CCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCCC
Confidence 98888877665 444444 88999999999998 8999999 899999999864
No 122
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=6.1e-27 Score=184.78 Aligned_cols=170 Identities=12% Similarity=0.136 Sum_probs=122.6
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC---CCCCCCCccc--cCCccc
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD---STPPSPLQKF--TGHEQG 75 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~--~~~~~~ 75 (262)
.|++|+.|+ ..+.+..++ |.+.|.+++|+|+|++|++++.++.+.+|......... ......+..+ ......
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 233 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV 233 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred CCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence 578888886 445566664 78899999999999999999966554444333211100 0001111111 111111
Q ss_pred ccc-------ceeEEEEecCCCcc----ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCC
Q 042146 76 ISD-------LATIRLWDVPTATS----LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSD 143 (262)
Q Consensus 76 v~~-------~~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~ 143 (262)
+.. ...+++|++..... ...+.+|...|++++|+|++++|++|+.|++|+|||+++++++..+ .+|..
T Consensus 234 l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~ 313 (365)
T 4h5i_A 234 LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF 313 (365)
T ss_dssp EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS
T ss_pred EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC
Confidence 100 01578888876543 3456788999999999999999999999999999999999998875 78999
Q ss_pred CeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+|++++|+|||++|++|+.|++|++||+..
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999998888888753
No 123
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=182.28 Aligned_cols=157 Identities=19% Similarity=0.352 Sum_probs=139.7
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeee-------------cCCCCee
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLP-------------AHSDPVT 146 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~ 146 (262)
.+++|+++..+....+.+|...|++++|+| ++++|++|+.||.|++||+.+++....+. .|...|.
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 466778777888888889999999999999 99999999999999999999876555443 4899999
Q ss_pred eEEEcc-CCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 147 AIDFNR-DGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 147 ~~~~~~-~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
+++|+| ++.+|++++.||.|++||+.. +++.++++++.+|.|++||+++++.+..+.
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence 999999 778999999999999999886 356699999999999999999999888887
Q ss_pred ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146 204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
. |...|.+++|+|+++ +|++++ .||.|++|++..
T Consensus 184 ~----------------------~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~ 218 (408)
T 4a11_B 184 G----------------------HRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRR 218 (408)
T ss_dssp C----------------------CCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTC
T ss_pred C----------------------CCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCC
Confidence 6 888999999999998 588998 899999999853
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=2.8e-25 Score=174.68 Aligned_cols=190 Identities=11% Similarity=0.147 Sum_probs=143.9
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCC-CCCCCCCC-CCCccccCCccc---
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI-SNFDSTPP-SPLQKFTGHEQG--- 75 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~-~~~~~~~~~~~~--- 75 (262)
.|+++..|+ ..+.+..+. |..+|.+++|+++. ++++ .|+.|++||+... ........ .....+......
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s 154 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN 154 (355)
T ss_dssp STTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred CccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence 467888886 455667775 67799999999874 4443 3789999999764 22211111 000001110000
Q ss_pred cccceeEEEEecCCCc----------------cceecccCCcceEEEEEeCCCCEEEeecCCCe-EEEEECCCCeeeeee
Q 042146 76 ISDLATIRLWDVPTAT----------------SLKTLIGHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVL 138 (262)
Q Consensus 76 v~~~~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~ 138 (262)
-...+.|++||+.+++ .+..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 0123479999998765 26778999999999999999999999999998 999999999999999
Q ss_pred e-c-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------------------------
Q 042146 139 P-A-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------------------------- 173 (262)
Q Consensus 139 ~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------------------------- 173 (262)
. + |...|.+++|+|++++|++++.|++|++||++.
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence 8 5 999999999999999999999999999999853
Q ss_pred CCccEEEEEcCCCeEEEEecCCC
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~ 196 (262)
++++++++++.||.+++|++..+
T Consensus 315 ~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SSSEEEEEETTTTEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEEEcC
Confidence 45678889999999999987653
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.2e-24 Score=171.32 Aligned_cols=194 Identities=11% Similarity=0.125 Sum_probs=152.6
Q ss_pred Cceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 5 ~~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
++|+.|+. ....+.+.+|...|.+++|+|+|++|++++.++ .|++|
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~------------------------------ 208 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ------------------------------ 208 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEE------------------------------
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEE------------------------------
Confidence 67787763 345677888999999999999999999998875 55555
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (262)
|+.+++.. .+..|...+.+++|+|++++|+ +++.++ .|++||+++++. ..+..|...+.+++|+|+|+.|
T Consensus 209 -----d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l 281 (415)
T 2hqs_A 209 -----TLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNL 281 (415)
T ss_dssp -----ETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEE
T ss_pred -----ECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEE
Confidence 55555443 4556778899999999999877 666665 499999998875 5566788899999999999998
Q ss_pred EEEeC-CC--eEEEEeCCC-------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEE
Q 042146 158 VTSSY-DG--LYRILDAST-------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCI 212 (262)
Q Consensus 158 ~~~~~-dg--~i~~~d~~~-------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~ 212 (262)
++++. ++ .|.+||+.. |++++|++++.+ ..|++||+.+++.. .+..
T Consensus 282 ~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~-------- 352 (415)
T 2hqs_A 282 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS-------- 352 (415)
T ss_dssp EEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC--------
T ss_pred EEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC--------
Confidence 88876 44 677778765 889999888764 58999999988763 3332
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC---cEEEEeecc
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR---TMKIWTQEK 261 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~~ 261 (262)
+. .+.+++|+|+++.|++++ .++ .|++|+++.
T Consensus 353 --------------~~-~~~~~~~spdg~~l~~~s--~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 353 --------------TF-LDETPSLAPNGTMVIYSS--SQGMGSVLNLVSTDG 387 (415)
T ss_dssp --------------SS-SCEEEEECTTSSEEEEEE--EETTEEEEEEEETTS
T ss_pred --------------CC-CcCCeEEcCCCCEEEEEE--cCCCccEEEEEECCC
Confidence 43 788999999999999988 445 789998753
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=1.1e-23 Score=167.44 Aligned_cols=201 Identities=12% Similarity=0.173 Sum_probs=154.4
Q ss_pred CeEEEecCCCeEEEeecCCCCCCCCCCC-CCCc--cccCCcccc--c--cceeEEEEecCCCccceecccCCcceEEEEE
Q 042146 36 RLLTSSSAEKTLLTYSLSSISNFDSTPP-SPLQ--KFTGHEQGI--S--DLATIRLWDVPTATSLKTLIGHTNYVFCINF 108 (262)
Q Consensus 36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~--~~~~~~~~v--~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 108 (262)
.++++++.|+.|++||++..+....... .... .+......+ . ..+.|++||+.+++.+..+..+. .+.+++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 4688899999999999876433211111 1111 111111111 1 23489999999998888877555 8999999
Q ss_pred eCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC-------------
Q 042146 109 NPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST------------- 173 (262)
Q Consensus 109 ~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~------------- 173 (262)
+|++++++ +++.++.|++||+++++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+..
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 160 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc
Confidence 99999775 566779999999999998888765 4568999999999977 6778899999999876
Q ss_pred ------CCccEE-EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146 174 ------PNGKFI-LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 174 ------~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 246 (262)
++++++ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|+++
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-----------------------VEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------CSSEEEEEEECTTSSEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----------------------cCCCccceEECCCCCEEEEE
Confidence 778776 677889999999999998877765 55678999999999999988
Q ss_pred eec-CCCcEEEEeecc
Q 042146 247 ALD-NDRTMKIWTQEK 261 (262)
Q Consensus 247 ~~d-~d~~i~iw~~~~ 261 (262)
+.+ .++.|++||+..
T Consensus 218 ~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGT 233 (391)
T ss_dssp EECSSCCEEEEEETTT
T ss_pred ecCcCCCcEEEEECCC
Confidence 731 279999999864
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.3e-24 Score=165.65 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=121.7
Q ss_pred CCceeeecc---cccceecccCcCceEEEEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 4 DRSLESFRP---YTLTQTLNGHLRAVSYVKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 4 d~~i~~~~~---~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
|++|+.|.- .+.+..+.+|...++.++|+| ++++|++++.|++|+|||+
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl------------------------- 210 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL------------------------- 210 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET-------------------------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC-------------------------
Confidence 777777753 567777888999999999998 7789999999999888854
Q ss_pred cceeEEEEecCCCccceecccCC---cceEEEEEeCCCCEE------------EeecCCCeEEEEECCCCeeeeee----
Q 042146 78 DLATIRLWDVPTATSLKTLIGHT---NYVFCINFNPQSNRI------------VSDTFNETIRIWDIKTGKCLKVL---- 138 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~---- 138 (262)
.+++.++++.+|. ..+.+++|+|++.++ ++|+.|++|++||+.+++.+..+
T Consensus 211 ----------~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 211 ----------KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp ----------TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred ----------CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 5677777776543 467888999999876 56888999999999999887665
Q ss_pred -ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEec
Q 042146 139 -PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNY 193 (262)
Q Consensus 139 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~ 193 (262)
.+|...+.+..+ ++..+++++.|++|++||+.+ |++++|++|+.|++|+|||+
T Consensus 281 p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 281 PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 356555444443 478999999999999999887 89999999999999999995
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=3.1e-23 Score=166.97 Aligned_cols=202 Identities=16% Similarity=0.135 Sum_probs=146.2
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
....++.+++++++.++++++.++ +++|+............ +.. .+... ..... ..+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~--------~~~--------~~~~~---~~~~~-~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD--------DPN--------KIVDK---VQGLL-VPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC--------CTT--------CEEEC---CCCEE-ECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc--------Ccc--------ccccc---Ccccc-ccCCC
Confidence 344689999999999999999888 88987643211100000 000 00000 11111 23567
Q ss_pred ceEEEEEeCCCCEEE----eecCCCeEEEEECCCC--------ee---eeeeecCCCCeeeEEEccC-CCEEEEEeCCCe
Q 042146 102 YVFCINFNPQSNRIV----SDTFNETIRIWDIKTG--------KC---LKVLPAHSDPVTAIDFNRD-GTMIVTSSYDGL 165 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~----~~~~dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 165 (262)
.|.+++|+|++++|+ +|+.|+.|++||++++ ++ +..+.+|...|.+++|+|+ +.+|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999999999999 8999999999998765 22 3455678999999999997 789999999999
Q ss_pred EEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 166 YRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 166 i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
|++||++. +++++|++|+.||.|++||++ ++....+..+.... .
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~---------------~ 237 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE---------------S 237 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC---------------T
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC---------------C
Confidence 99999875 789999999999999999998 66666655432100 0
Q ss_pred ccccceEEEEEcCCCCeEEEeeecCCCc------EEEEeecc
Q 042146 226 SHRDPVISVASHPAKNIIASGALDNDRT------MKIWTQEK 261 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~------i~iw~~~~ 261 (262)
.|...|.+++|++++.++++.+. .||. +++|++.+
T Consensus 238 ~~~~~v~~v~w~~~~~~l~~~~~-~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 238 DHPVRVLDVLWIGTYVFAIVYAA-ADGTLETSPDVVMALLPK 278 (434)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEE-TTCCSSSCCEEEEEECCC
T ss_pred CCceeEEEEEEecCceEEEEEcc-CCCccCCCCceEEEEecc
Confidence 03458999999999888866542 3433 88999864
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=2.1e-22 Score=166.34 Aligned_cols=235 Identities=11% Similarity=0.126 Sum_probs=170.6
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeec--CCCCCCCCCC-CCCCc--cccC----
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL--SSISNFDSTP-PSPLQ--KFTG---- 71 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~--~~~~~~~~~~-~~~~~--~~~~---- 71 (262)
.|+++..|+ ..+++.++..+.. +.+++|+|+|++|++++.|++|++||+ .+........ ..... .+..
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~ 235 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 235 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred CCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCC
Confidence 467787775 4567788874333 889999999999999999999999999 4432211111 11111 1111
Q ss_pred Cccccc----cceeEEEEecCCCccceeccc----------CC-cceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeee
Q 042146 72 HEQGIS----DLATIRLWDVPTATSLKTLIG----------HT-NYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCL 135 (262)
Q Consensus 72 ~~~~v~----~~~~i~v~d~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~ 135 (262)
....+. ....|.+||..+++++..+.. |. ..+..+.++|+++. +++...++.|.+||+.+.+.+
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 111111 123899999999988877654 22 36889999997654 567788999999999876544
Q ss_pred e--eeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-----------------------CC-ccEEEEEc-CCCe
Q 042146 136 K--VLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-----------------------PN-GKFILVGT-LDNT 187 (262)
Q Consensus 136 ~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-----------------------~~-~~~l~~~~-~dg~ 187 (262)
. .+. +...+.++.|+|++++|++++ .+++|.+||+.+ |+ +..++++. .|++
T Consensus 316 ~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~ 394 (543)
T 1nir_A 316 TVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS 394 (543)
T ss_dssp EEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred eeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCce
Confidence 3 443 566788999999999776654 689999999876 33 55666665 6799
Q ss_pred EEEEecCC-------CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee-cC----CCcEE
Q 042146 188 LRLWNYST-------RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL-DN----DRTMK 255 (262)
Q Consensus 188 i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~----d~~i~ 255 (262)
|.+||..+ .++++++.. |...+..++++|+++.|++++. +. +++|.
T Consensus 395 V~v~d~~~~~~~~~~~~~v~~l~~----------------------~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 395 ISLIGTDPKNHPQYAWKKVAELQG----------------------QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEEC----------------------SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred EEEEEeCCCCCchhcCeEEEEEEc----------------------CCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 99999988 888888887 6677888999999999999851 01 57999
Q ss_pred EEeecc
Q 042146 256 IWTQEK 261 (262)
Q Consensus 256 iw~~~~ 261 (262)
+||+++
T Consensus 453 v~d~~~ 458 (543)
T 1nir_A 453 VFDLKN 458 (543)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 999864
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.4e-22 Score=156.72 Aligned_cols=232 Identities=10% Similarity=0.139 Sum_probs=154.8
Q ss_pred CCCceeeecc---c--ccceecccCcCceEEEEEccCCCeEEEecCC-CeEEEeecC--CCCCC--C-CCCCCCCc--cc
Q 042146 3 SDRSLESFRP---Y--TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE-KTLLTYSLS--SISNF--D-STPPSPLQ--KF 69 (262)
Q Consensus 3 ~d~~i~~~~~---~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~--~~~~~--~-~~~~~~~~--~~ 69 (262)
.|+.+..|+. . +....+ .|...+.+++|+|++++|++++.+ +.|.+|+++ ..... . ........ .+
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 91 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEE
Confidence 4778888853 2 233333 477889999999999988888876 999999987 22110 0 00000111 11
Q ss_pred cCCcccccc----ceeEEEEecC---CCccceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCC-Ceeee----
Q 042146 70 TGHEQGISD----LATIRLWDVP---TATSLKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKT-GKCLK---- 136 (262)
Q Consensus 70 ~~~~~~v~~----~~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~---- 136 (262)
......+.. .+.|.+||+. ..+....+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++...
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 111111211 2379999994 3334444443 34588999999999887776 889999999987 54432
Q ss_pred eeec-CCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC------------------------------CCccEEE-EEc
Q 042146 137 VLPA-HSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST------------------------------PNGKFIL-VGT 183 (262)
Q Consensus 137 ~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~------------------------------~~~~~l~-~~~ 183 (262)
.+.. ....+..++|+|+++++++++ .++.|.+|++.. +++++|+ ++.
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 2222 345788999999999776554 889999999842 5676666 455
Q ss_pred CCCeEEEEecC--CC--ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 184 LDNTLRLWNYS--TR--KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 184 ~dg~i~i~d~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
.++.|.+||+. ++ +.+..+.. + ..+..++|+|++++|++++. .++.|.+|++
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~ 306 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPT----------------------E-TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEI 306 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEEC----------------------S-SSCCCEEECTTSSEEEEECT-TTCEEEEEEE
T ss_pred CCCEEEEEEEcCCCCceEEeeeecC----------------------C-CccceEEECCCCCEEEEecC-CCCeEEEEEE
Confidence 78999999998 22 33333332 2 23789999999998888763 3799999977
Q ss_pred c
Q 042146 260 E 260 (262)
Q Consensus 260 ~ 260 (262)
+
T Consensus 307 d 307 (343)
T 1ri6_A 307 V 307 (343)
T ss_dssp E
T ss_pred c
Confidence 5
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=1.2e-22 Score=162.91 Aligned_cols=196 Identities=9% Similarity=0.086 Sum_probs=146.8
Q ss_pred ceeeecc----cccc--eecccCcCceEEEEEccC--------------CCeEEEecCC------CeEEEeecCCCCCCC
Q 042146 6 SLESFRP----YTLT--QTLNGHLRAVSYVKFSHD--------------GRLLTSSSAE------KTLLTYSLSSISNFD 59 (262)
Q Consensus 6 ~i~~~~~----~~~~--~~~~~h~~~v~~~~~~~~--------------~~~l~s~~~d------~~i~iw~~~~~~~~~ 59 (262)
+++.|+. .+.+ ..+.+|...+..+++++. +..++.++.+ +.|++|
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~--------- 164 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVS--------- 164 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEE---------
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEE---------
Confidence 6777765 3333 457888888888887751 4556655543 455555
Q ss_pred CCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC---eEEEEECCCCeeee
Q 042146 60 STPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE---TIRIWDIKTGKCLK 136 (262)
Q Consensus 60 ~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~ 136 (262)
|+. +.....+..|...+.+++|+|++++|++++.++ .|++||+++++..
T Consensus 165 --------------------------d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 165 --------------------------DYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp --------------------------ETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred --------------------------cCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 544 344566677888999999999999999998875 9999999988765
Q ss_pred eeecCCCCeeeEEEccCCCEEE-EEeCCCe--EEEEeCCC-------------------CCccEEEEEcC-CC--eEEEE
Q 042146 137 VLPAHSDPVTAIDFNRDGTMIV-TSSYDGL--YRILDAST-------------------PNGKFILVGTL-DN--TLRLW 191 (262)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~ 191 (262)
.+..|...+.+++|+|+|+.|+ +++.++. |++||+.+ |++++|++++. ++ .|++|
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 4566888999999999999877 6666654 99999875 78998888775 44 68888
Q ss_pred ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CCCcEEEEeecc
Q 042146 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD-NDRTMKIWTQEK 261 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d~~i~iw~~~~ 261 (262)
|+.+++.. .+.. +...+.+++|+|++++|++++.+ .+..|++|+++.
T Consensus 297 d~~~~~~~-~l~~----------------------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 297 NINGGAPQ-RITW----------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp ETTSSCCE-ECCC----------------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred ECCCCCEE-EEec----------------------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 98877643 3332 55678899999999999988732 125899999864
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=2.2e-22 Score=153.57 Aligned_cols=199 Identities=15% Similarity=0.183 Sum_probs=144.0
Q ss_pred CCCceeeeccc-ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 3 SDRSLESFRPY-TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 3 ~d~~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
.|++|+.|+.. .....+..|...|.+++|+|++++|++++ ++.|++||++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~---------------------------- 70 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLA---------------------------- 70 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESS----------------------------
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCC----------------------------
Confidence 57788888743 23445667899999999999999999987 6777777553
Q ss_pred EEEEecCC-CccceecccC-CcceEEEEEeCCCCEEEeec--CCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 82 IRLWDVPT-ATSLKTLIGH-TNYVFCINFNPQSNRIVSDT--FNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 82 i~v~d~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
+ ++.......+ ...+.+++|+|+++++++++ .++ .|..+++.+++ ...+.. ...+..++|+|+++
T Consensus 71 -------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~ 141 (297)
T 2ojh_A 71 -------GDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGK 141 (297)
T ss_dssp -------SCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSS
T ss_pred -------CCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCC
Confidence 3 3333333333 36788899999999999988 334 45555555554 344433 34589999999999
Q ss_pred EEE-EEeCCCeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecC-CCceeeEEeccCCceeE
Q 042146 156 MIV-TSSYDGLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYS-TRKILKTYSGYTNSKYC 211 (262)
Q Consensus 156 ~l~-~~~~dg~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~ 211 (262)
.|+ ++..++.+.+|++.. |++++|+.++ .++.+++|++. .+..+..+..
T Consensus 142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~------- 214 (297)
T 2ojh_A 142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD------- 214 (297)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-------
T ss_pred EEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-------
Confidence 877 778899999998532 7888777665 58889999876 4555555544
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC---------CCcEEEEeecc
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN---------DRTMKIWTQEK 261 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------d~~i~iw~~~~ 261 (262)
+...+..++|+|++++|++++.+. ++.|++|+++.
T Consensus 215 ---------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 215 ---------------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp ---------------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred ---------------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 666788999999999999888321 15699999764
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=3.9e-21 Score=149.47 Aligned_cols=198 Identities=11% Similarity=0.131 Sum_probs=146.7
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 79 (262)
.+++|..|+ ..+....+..+...+ +++|+|+++++++++. ++.|.+||+
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~--------------------------- 69 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET--------------------------- 69 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC---------------------------
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC---------------------------
Confidence 467777775 455666666666777 9999999997666654 777777754
Q ss_pred eeEEEEecCCCcc-ceecccCCcceEEEEEeCCCCEEEeecCCC---eEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 80 ATIRLWDVPTATS-LKTLIGHTNYVFCINFNPQSNRIVSDTFNE---TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 80 ~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
.+++. ...+..+..+..+++|+|++++++++..++ .|.+||+++++.+..+.. .....+++|+|+|+
T Consensus 70 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~ 140 (331)
T 3u4y_A 70 --------QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGN 140 (331)
T ss_dssp --------SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSS
T ss_pred --------CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCC
Confidence 34444 444555555555599999999999666553 899999999998887764 44569999999998
Q ss_pred EEEEE-eCCCe-EEEEeCCC------------------------CCccEEE-EEcCCCeEEEEecCCCce---eeEEecc
Q 042146 156 MIVTS-SYDGL-YRILDAST------------------------PNGKFIL-VGTLDNTLRLWNYSTRKI---LKTYSGY 205 (262)
Q Consensus 156 ~l~~~-~~dg~-i~~~d~~~------------------------~~~~~l~-~~~~dg~i~i~d~~~~~~---~~~~~~~ 205 (262)
+++++ ..++. +.+|++.. |++++++ ++..++.|++||+.+++. +..+.
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-- 218 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-- 218 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--
Confidence 66555 55578 99988542 7887554 455789999999999888 66555
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
....+..++|+|++++|+.++. .++.|.+|++..
T Consensus 219 ---------------------~~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~ 252 (331)
T 3u4y_A 219 ---------------------TNNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLS 252 (331)
T ss_dssp ---------------------CSSCCCCEEECTTSSEEEEECS-SEEEEEEEETTT
T ss_pred ---------------------CCCCCceEEECCCCCEEEEEEc-CCCEEEEEECCC
Confidence 3356678999999997766652 478899999763
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=9.3e-21 Score=156.54 Aligned_cols=242 Identities=10% Similarity=0.134 Sum_probs=165.4
Q ss_pred CCCceeeecc----cccceecccCcCceEEEEEcc----CCCeEEEecC-CCeEEEeecCCCCCCCCCCC----------
Q 042146 3 SDRSLESFRP----YTLTQTLNGHLRAVSYVKFSH----DGRLLTSSSA-EKTLLTYSLSSISNFDSTPP---------- 63 (262)
Q Consensus 3 ~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~---------- 63 (262)
.|++|..|+. .+.+.++. +...+..++|+| +|+++++++. +++|.+||..+.+.......
T Consensus 198 ~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 198 RDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 276 (543)
T ss_dssp TTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred CCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence 4677777765 45666776 445679999999 9999999884 89999999866432211110
Q ss_pred ----CCCccccCCccc--c---ccceeEEEEecCCCccce--ecccCCcceEEEEEeCCCCEEEee-cCCCeEEEEECCC
Q 042146 64 ----SPLQKFTGHEQG--I---SDLATIRLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSD-TFNETIRIWDIKT 131 (262)
Q Consensus 64 ----~~~~~~~~~~~~--v---~~~~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 131 (262)
........+... + ...+.|.+||..+.+.+. .+ .+...+..+.|+|++++++++ ..+++|.+||+.+
T Consensus 277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t 355 (543)
T 1nir_A 277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD 355 (543)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence 000001111111 1 122389999998766544 33 355668889999999987654 5688999999999
Q ss_pred Ceeeeeeec----CCCCeeeEEEccC-CCEEEEEe-CCCeEEEEeCCC---------------------------CCccE
Q 042146 132 GKCLKVLPA----HSDPVTAIDFNRD-GTMIVTSS-YDGLYRILDAST---------------------------PNGKF 178 (262)
Q Consensus 132 ~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~~~d~~~---------------------------~~~~~ 178 (262)
++++..+.. |.+....+ ++|+ +..++++. .|++|.+||+.. |++++
T Consensus 356 g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 356 RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence 998888764 54433333 4676 56666665 689999999753 78899
Q ss_pred EEEEc-------CCCeEEEEecCCCcee-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee--
Q 042146 179 ILVGT-------LDNTLRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL-- 248 (262)
Q Consensus 179 l~~~~-------~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-- 248 (262)
|++++ .++.|.+||+.+++.. ..+.-..-. -+..+...+..+.|+|+|+.|+++.+
T Consensus 435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~--------------~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA--------------DLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH--------------CCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc--------------ccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 99987 2679999999998876 443210000 00005678999999999999998754
Q ss_pred -cCCCcEEEEeecc
Q 042146 249 -DNDRTMKIWTQEK 261 (262)
Q Consensus 249 -d~d~~i~iw~~~~ 261 (262)
+.|+.|.|||.++
T Consensus 501 ~~~~~~i~v~D~~t 514 (543)
T 1nir_A 501 KNDSSALVVVDDKT 514 (543)
T ss_dssp TTSCCEEEEEETTT
T ss_pred CCCCCeEEEEECCC
Confidence 2479999999764
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=5.3e-21 Score=164.01 Aligned_cols=217 Identities=11% Similarity=0.085 Sum_probs=153.6
Q ss_pred cCceEEEEEccCCCeEEEecC-CC-----eEEEeecCCCCCCCCCCC----------------------------CCCcc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSA-EK-----TLLTYSLSSISNFDSTPP----------------------------SPLQK 68 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~----------------------------~~~~~ 68 (262)
...+.+++|+|||++|++++. |+ .|++||+++......... .....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999998 88 999999876432111100 00111
Q ss_pred ccCCcccc--ccceeEEEEecCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146 69 FTGHEQGI--SDLATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144 (262)
Q Consensus 69 ~~~~~~~v--~~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (262)
+......+ .....|++||+.++. ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.......+...
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 11111111 111489999998873 4556677888899999999999999887 569999999988766554444332
Q ss_pred ----------------eeeEEEccCCCEEEEEeCCC---------------------------------eEEEEeCCC--
Q 042146 145 ----------------VTAIDFNRDGTMIVTSSYDG---------------------------------LYRILDAST-- 173 (262)
Q Consensus 145 ----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~~~d~~~-- 173 (262)
+..++|+|||++|++++.|+ .|.+||+..
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 788888765
Q ss_pred --------------------CCccEEEEEcC-----CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146 174 --------------------PNGKFILVGTL-----DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR 228 (262)
Q Consensus 174 --------------------~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (262)
|++++|++++. +..|++||+.+++....+..+... .-
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~------------------~~ 336 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT------------------WV 336 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS------------------CC
T ss_pred ceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC------------------cC
Confidence 34566665542 467888999888876666542100 00
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
..+..++|+|+++++++++ .||.++||.++
T Consensus 337 ~~~~~~~~spdg~~~~~~~--~~g~~~l~~~~ 366 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSE--RTGFQHLYRID 366 (741)
T ss_dssp CCCSCCEECTTSCEEEEEC--TTSSCEEEEEC
T ss_pred CcCCceEECCCCeEEEEec--CCCccEEEEEc
Confidence 1456889999999888888 78988888775
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.1e-20 Score=158.86 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=155.1
Q ss_pred CCCCceeeec--ccccceecccCcC---ceEEEEEccCCCeEEEecCC---------CeEEEeecCCCCCCCCCC--C--
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHLR---AVSYVKFSHDGRLLTSSSAE---------KTLLTYSLSSISNFDSTP--P-- 63 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~--~-- 63 (262)
+.|++++.|+ ..+....+..|.. .|.+++|||||++|++++.+ +.+.+||+++........ .
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 113 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc
Confidence 3578888886 4455666666665 49999999999999998764 788899998754311111 1
Q ss_pred --CCCccccCCccccc--cceeEEEEecCCCccceecccCCcce------------------EEEEEeCCCCEEEeecCC
Q 042146 64 --SPLQKFTGHEQGIS--DLATIRLWDVPTATSLKTLIGHTNYV------------------FCINFNPQSNRIVSDTFN 121 (262)
Q Consensus 64 --~~~~~~~~~~~~v~--~~~~i~v~d~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~~~~~d 121 (262)
.....+......+. ....|++||+.+++.......+...+ .+++|+|||++|++++.+
T Consensus 114 ~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 01112222222222 12389999999887765554443333 789999999999987754
Q ss_pred C----------------------------------eEEEEECCCCeeeeeeecC------CCCeeeEEEccCCCEEEEEe
Q 042146 122 E----------------------------------TIRIWDIKTGKCLKVLPAH------SDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 122 g----------------------------------~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~ 161 (262)
+ .|++||+.+++....+..+ ...+..++|+|||+++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 3 7999999988765555543 56789999999999887765
Q ss_pred C----CCeEEEEeCCC-------------------------CCccEEEE--EcCCC------eEEEEe-cCCCce--eeE
Q 042146 162 Y----DGLYRILDAST-------------------------PNGKFILV--GTLDN------TLRLWN-YSTRKI--LKT 201 (262)
Q Consensus 162 ~----dg~i~~~d~~~-------------------------~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~ 201 (262)
. +..|.+||+.+ |+++.|+. +..++ .|++|| ...++. ...
T Consensus 274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS 353 (723)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence 3 35788898654 45554543 33455 455566 233330 233
Q ss_pred EeccCCceeEEEEEEecCCCeeEEccccceEE-EEEcCCCCeEEEeeecCC--CcEEEEeec
Q 042146 202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS-VASHPAKNIIASGALDND--RTMKIWTQE 260 (262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d~d--~~i~iw~~~ 260 (262)
+.. +...+.. ++|+|+++.|+..+. .+ +.++||+++
T Consensus 354 l~~----------------------~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 354 ITS----------------------GDWDVTKILAYDEKGNKIYFLST-EDLPRRRQLYSAN 392 (723)
T ss_dssp SCC----------------------SSSCEEEEEEEETTTTEEEEEES-SSCTTCCEEEEEC
T ss_pred eec----------------------CCeEEEeeeEEcCCCCEEEEEEc-CCCCcceEEEEEe
Confidence 321 2233444 699999999987762 24 789999985
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=5.6e-21 Score=148.64 Aligned_cols=228 Identities=11% Similarity=0.108 Sum_probs=159.7
Q ss_pred CCCceeeecc--cccceecccCc-C-ceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCC---------CCCCcc
Q 042146 3 SDRSLESFRP--YTLTQTLNGHL-R-AVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTP---------PSPLQK 68 (262)
Q Consensus 3 ~d~~i~~~~~--~~~~~~~~~h~-~-~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~---------~~~~~~ 68 (262)
.|++|..|+. .+.+..+.... . .+..++|+|+++++ ++++.++.|.+||+.+........ ......
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence 5778888864 45555555322 1 57899999999765 566678999999987643321111 001111
Q ss_pred ccCCccccc---------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe
Q 042146 69 FTGHEQGIS---------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK 133 (262)
Q Consensus 69 ~~~~~~~v~---------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 133 (262)
+......+. ....|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.|.+||+.+++
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~ 165 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT 165 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc
Confidence 211111121 125899999988877766654 4557889999999988887 6889999999998
Q ss_pred eeeeeecCCCCeeeEEEccCCCEEEEEeCC-C-----------------------eEEEEeCCC----------------
Q 042146 134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYD-G-----------------------LYRILDAST---------------- 173 (262)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----------------------~i~~~d~~~---------------- 173 (262)
.+..+..+.. ...+.|+|++..++..+.. + .|.+||+.+
T Consensus 166 ~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 244 (337)
T 1pby_B 166 LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence 8777754431 1233789998866555433 2 357888653
Q ss_pred -----CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee
Q 042146 174 -----PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL 248 (262)
Q Consensus 174 -----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 248 (262)
+++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++
T Consensus 245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----------------------~~~~~~~~~s~dg~~l~~~~- 298 (337)
T 1pby_B 245 STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-----------------------PHSYYSVNVSTDGSTVWLGG- 298 (337)
T ss_dssp EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----------------------SSCCCEEEECTTSCEEEEES-
T ss_pred eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----------------------CCceeeEEECCCCCEEEEEc-
Confidence 678888887 68999999999888877763 34567899999999999887
Q ss_pred cCCCcEEEEeecc
Q 042146 249 DNDRTMKIWTQEK 261 (262)
Q Consensus 249 d~d~~i~iw~~~~ 261 (262)
.++.|++|++..
T Consensus 299 -~~~~i~v~d~~~ 310 (337)
T 1pby_B 299 -ALGDLAAYDAET 310 (337)
T ss_dssp -BSSEEEEEETTT
T ss_pred -CCCcEEEEECcC
Confidence 789999999864
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=4.5e-20 Score=144.53 Aligned_cols=220 Identities=9% Similarity=0.049 Sum_probs=160.5
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCC---C------C--C--c
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPP---S------P--L--Q 67 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~---~------~--~--~ 67 (262)
+++|..|+ ..+....+.. ...+..++|+|+++++ ++...++.|.+||..+.+....... . + . .
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred CccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence 56777776 3455555553 3457889999999955 5556689999999876432111100 0 0 0 1
Q ss_pred cccCCcccc--cc---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--
Q 042146 68 KFTGHEQGI--SD---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-- 140 (262)
Q Consensus 68 ~~~~~~~~v--~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 140 (262)
.+......+ .. ...|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..
T Consensus 147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 226 (353)
T 3vgz_A 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD 226 (353)
T ss_dssp EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence 111111111 11 23699999999988887775666688999999999999999999999999999988877754
Q ss_pred --CCCCeeeEEEccCCCEEEEEeC-CCeEEEEeCCC------------------CCccEEEEEc-CCCeEEEEecCCCce
Q 042146 141 --HSDPVTAIDFNRDGTMIVTSSY-DGLYRILDAST------------------PNGKFILVGT-LDNTLRLWNYSTRKI 198 (262)
Q Consensus 141 --~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~------------------~~~~~l~~~~-~dg~i~i~d~~~~~~ 198 (262)
+...+..++|+|+++.+++++. ++.|.+||..+ ++++++++++ .++.|.+||..+++.
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 4556788999999997776664 59999999876 6787555554 789999999999998
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
+..+. ....+.+++|+|++++|+.+.
T Consensus 307 ~~~~~-----------------------~~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 307 VKTFD-----------------------TPTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EEEEE-----------------------CCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEe-----------------------cCCCCCeEEEcCCCCEEEEEE
Confidence 88776 334678999999999777766
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=2.1e-20 Score=150.44 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=103.5
Q ss_pred CcCceEEEEEccCCCeEE----EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146 22 HLRAVSYVKFSHDGRLLT----SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI 97 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~ 97 (262)
|...|.+++|+|++++|+ +|+.|+.|++||+........... +.......+.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~ 146 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK------------------------RPFAYHKLLK 146 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC------------------------CCSEEEECCC
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc------------------------ceeeeeeccC
Confidence 567899999999999999 889999999998754210000000 0001234456
Q ss_pred cCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 98 GHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 98 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
+|...|.+++|+|+ +.+|++++.||+|++||++++..+.....|...|.+++|+|+|++|++|+.||.|++||++
T Consensus 147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 78999999999997 8899999999999999999987776677788999999999999999999999999999987
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.8e-19 Score=141.14 Aligned_cols=215 Identities=10% Similarity=0.064 Sum_probs=157.3
Q ss_pred CcCceEEEEEccCCCeEEEecC-------CCeEEEeecCCCCCCCCCC---CCCCccccCCccccc----cceeEEEEec
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSA-------EKTLLTYSLSSISNFDSTP---PSPLQKFTGHEQGIS----DLATIRLWDV 87 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~v~----~~~~i~v~d~ 87 (262)
....+..++|+|+++++++++. ++.|.+||..+.+...... ......+......+. ....|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999998888774 5689999987643221110 001111111111111 1238999999
Q ss_pred CCCccceecccCCc---------ceEEEEEeCCCCEEEeec--CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146 88 PTATSLKTLIGHTN---------YVFCINFNPQSNRIVSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 88 ~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
.+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||+++++.+..+..+...+.+++|+|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 99988777655432 278899999999877665 5789999999999988888756666899999999999
Q ss_pred EEEEeCCCeEEEEeCCC------------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEeccCCceeE
Q 042146 157 IVTSSYDGLYRILDAST------------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYTNSKYC 211 (262)
Q Consensus 157 l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 211 (262)
+++++.++.|.+||+.+ ++++++++++ .++.|.+||+.+++.+..+..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 271 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA------- 271 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-------
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-------
Confidence 99999999999999865 5677666655 458999999999998887764
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.. ...++|+|+++.+++++. .++.|.+||+..
T Consensus 272 ---------------~~--~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~ 303 (353)
T 3vgz_A 272 ---------------PE--SLAVLFNPARNEAYVTHR-QAGKVSVIDAKS 303 (353)
T ss_dssp ---------------SS--CCCEEEETTTTEEEEEET-TTTEEEEEETTT
T ss_pred ---------------CC--CceEEECCCCCEEEEEEC-CCCeEEEEECCC
Confidence 11 146899999996665552 589999999863
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.8e-19 Score=140.75 Aligned_cols=215 Identities=12% Similarity=0.212 Sum_probs=141.6
Q ss_pred CcCceEEEEEccCCCeEEEecCC----CeEEEeecCCC--CC--CCCC--CCCCCccccCCccccc----cceeEEEEec
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAE----KTLLTYSLSSI--SN--FDST--PPSPLQKFTGHEQGIS----DLATIRLWDV 87 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d----~~i~iw~~~~~--~~--~~~~--~~~~~~~~~~~~~~v~----~~~~i~v~d~ 87 (262)
+...+..++|+|++++|++++.+ +.|.+|+++.. .. .... .......+......+. ....+.+|++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence 67778889999999999998876 79999988652 10 0000 0000000110111111 1237999999
Q ss_pred CCCccceecc--------------cCCcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCee------e-------eeee
Q 042146 88 PTATSLKTLI--------------GHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKC------L-------KVLP 139 (262)
Q Consensus 88 ~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~------~-------~~~~ 139 (262)
.....+..+. .+...+.+++|+|+++++++ ...++.|.+|++..... + ....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 7544332221 11234688999999996655 44588999998874331 1 1122
Q ss_pred cCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-------------------------CCccEEEEEcC--CCeEEEE
Q 042146 140 AHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-------------------------PNGKFILVGTL--DNTLRLW 191 (262)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-------------------------~~~~~l~~~~~--dg~i~i~ 191 (262)
.+......++|+|+|+++++++ .++.|.+|++.. |++++|+++.. ++.|.+|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 3445678999999999887777 689999999753 78888877665 4899999
Q ss_pred ecC--CCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 192 NYS--TRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 192 d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
++. +++. +..+. ....+..++|+|++++|++++. .++.|.+|+++
T Consensus 288 ~~~~~~g~~~~~~~~~-----------------------~g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQL-----------------------TGIHPRNFIITPNGKYLLVACR-DTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEE-----------------------CSSCCCEEEECTTSCEEEEEET-TTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEec-----------------------CCCCCceEEECCCCCEEEEEEC-CCCCEEEEEEE
Confidence 985 3442 22222 2235678999999998888874 37899998775
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=3.5e-19 Score=139.41 Aligned_cols=211 Identities=12% Similarity=0.167 Sum_probs=141.0
Q ss_pred CCceeeecc----cccceecccCcCceEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 4 DRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 4 d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
++.|..|+. .+.+..+..+...+..++|+|++++|++++ .++.|.+|++......
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-------------------- 121 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-------------------- 121 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE--------------------
T ss_pred CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe--------------------
Confidence 456666652 223444455778889999999999888887 7899999987531000
Q ss_pred ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC-CCeee--eeeecC-CCCeeeEEEccCC
Q 042146 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK-TGKCL--KVLPAH-SDPVTAIDFNRDG 154 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~--~~~~~~-~~~v~~~~~~~~~ 154 (262)
..+.........+. ...+...+.+++|+|+++++++...++.|.+|++. +++.. ..+..+ ......++|+|+|
T Consensus 122 -~~~~~~~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 122 -TLTDTVQHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp -EEEEEEECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred -eecceeecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 00111111000000 11234568899999999977777778999999998 45432 222222 3367889999999
Q ss_pred CEEEE-EeCCCeEEEEeCCC------------------------------CCccEEE-EEcCCCeEEEEecCCC---cee
Q 042146 155 TMIVT-SSYDGLYRILDAST------------------------------PNGKFIL-VGTLDNTLRLWNYSTR---KIL 199 (262)
Q Consensus 155 ~~l~~-~~~dg~i~~~d~~~------------------------------~~~~~l~-~~~~dg~i~i~d~~~~---~~~ 199 (262)
+++++ +..++.+.+|++.. |++++|+ +...++.|.+|++... +.+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 96655 55788999998652 6788774 5556899999998732 333
Q ss_pred eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
..+.. +...+..++|+|++++|++++. .++.|.+|+++
T Consensus 279 ~~~~~----------------------~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d 316 (347)
T 3hfq_A 279 QQIST----------------------EGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARD 316 (347)
T ss_dssp EEEEC----------------------SSSCCCEEEECTTSSEEEEEET-TTTEEEEEEEC
T ss_pred EEEec----------------------CCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEe
Confidence 33332 4556789999999999888873 35899999765
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=1.2e-19 Score=155.61 Aligned_cols=210 Identities=10% Similarity=0.058 Sum_probs=146.5
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCC---CCCCCCCC-CCC--ccccCCccccc--cceeEEEEecCCCccceec
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI---SNFDSTPP-SPL--QKFTGHEQGIS--DLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~-~~~--~~~~~~~~~v~--~~~~i~v~d~~~~~~~~~~ 96 (262)
.|.+++|||||++|++++. +.|++||+.+. ........ ... ..+......+. ....|++||+.+++.....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 3889999999999999886 99999999765 22211111 111 11111111121 1227999999887765544
Q ss_pred ccCCcc----------------eEEEEEeCCCCEEEeecCCC---------------------------------eEEEE
Q 042146 97 IGHTNY----------------VFCINFNPQSNRIVSDTFNE---------------------------------TIRIW 127 (262)
Q Consensus 97 ~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~vw 127 (262)
..+... +..++|+|||++|++++.|+ .|.+|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 433332 47899999999999887665 88999
Q ss_pred ECCC-Ceeeeeee--cCCCCeeeEEEccCCCEEEEEeC-----CCeEEEEeCCC------------------------CC
Q 042146 128 DIKT-GKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY-----DGLYRILDAST------------------------PN 175 (262)
Q Consensus 128 d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------------------------~~ 175 (262)
|+.+ ++...... .|...+..++| |||+.|++++. +..|.+||+.+ ++
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9988 77544432 36778999999 99999887764 56799998654 67
Q ss_pred ccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE-EEcCCCCeEEEeeecCCC-
Q 042146 176 GKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV-ASHPAKNIIASGALDNDR- 252 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~d~d~- 252 (262)
++++++++.+|.++||.+. .++ ...+.. +...+..+ .|+|+++.|+..+. .++
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~----------------------~~~~v~~~~~~s~dg~~l~~~~~-~~~~ 403 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAALTH----------------------GNWSVDELLAVDEKAGLAYFRAG-IESA 403 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEESCC----------------------SSSCEEEEEEEETTTTEEEEEEC-SSCT
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeeeee----------------------cceEEEeEeEEeCCCCEEEEEEe-CCCC
Confidence 7888888888877777654 344 555544 66677777 59999987765542 355
Q ss_pred -cEEEEeec
Q 042146 253 -TMKIWTQE 260 (262)
Q Consensus 253 -~i~iw~~~ 260 (262)
.++||+++
T Consensus 404 ~~~~l~~~~ 412 (741)
T 2ecf_A 404 RESQIYAVP 412 (741)
T ss_dssp TCBEEEEEE
T ss_pred ceEEEEEEE
Confidence 89999875
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=4.3e-19 Score=137.91 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=139.2
Q ss_pred CCceeeec--cccc-ceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 4 DRSLESFR--PYTL-TQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 4 d~~i~~~~--~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
++.|..|+ ..+. ...+..+..+..+++|+|++++|+++..++ .|.+||+
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~------------------------- 115 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF------------------------- 115 (331)
T ss_dssp TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET-------------------------
T ss_pred CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC-------------------------
Confidence 45666665 3444 666777777776699999999999655553 7777754
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEee-cCCCe-EEEEECCCCeee----eeeecCCCCeeeEEEc
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD-TFNET-IRIWDIKTGKCL----KVLPAHSDPVTAIDFN 151 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~vwd~~~~~~~----~~~~~~~~~v~~~~~~ 151 (262)
.+++.+..+.. .....+++|+|++++++++ ..++. |.+|++.....+ ............++|+
T Consensus 116 ----------~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 116 ----------LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT 184 (331)
T ss_dssp ----------TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC
T ss_pred ----------CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC
Confidence 44444444443 3446899999999865544 55578 999998753322 1122334567999999
Q ss_pred cCCCEEEEE-eCCCeEEEEeCCC----------------------CCccEEEEEc-CCCeEEEEecCCCce--eeEEecc
Q 042146 152 RDGTMIVTS-SYDGLYRILDAST----------------------PNGKFILVGT-LDNTLRLWNYSTRKI--LKTYSGY 205 (262)
Q Consensus 152 ~~~~~l~~~-~~dg~i~~~d~~~----------------------~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~ 205 (262)
|++++++++ ..++.|.+||+.. |+++++++++ .++.|.+||+.+++. +..+...
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~ 264 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG 264 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence 999966554 4689999999864 7888776655 577899999998876 4433321
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
... .. ........++|+|++++|++++. .++.|++|++..
T Consensus 265 ~~~----------~~-----~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~ 304 (331)
T 3u4y_A 265 LLI----------DP-----RPLFGANQMALNKTETKLFISAN-ISRELKVFTISG 304 (331)
T ss_dssp CCC----------CC-----GGGTTCCCEEECTTSSEEEEEET-TTTEEEEEETTS
T ss_pred ccc----------CC-----CCcccccceEECCCCCEEEEecC-CCCcEEEEEecC
Confidence 000 00 01222356899999998877663 467999999865
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.9e-19 Score=153.67 Aligned_cols=234 Identities=14% Similarity=0.175 Sum_probs=154.4
Q ss_pred CCCceeeeccc-ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC-----CCCCCCCCC--C----------
Q 042146 3 SDRSLESFRPY-TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-----ISNFDSTPP--S---------- 64 (262)
Q Consensus 3 ~d~~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~--~---------- 64 (262)
.|++++.|+.. .....+..+...+.+++|+|||++|+++ .++.|++|++.+ ......... .
T Consensus 99 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 99 TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 45677777632 2333455677889999999999999995 689999999976 432211111 0
Q ss_pred ------CCccccCCccccc------------------------------------cceeEEEEecCCCccceec--ccCC
Q 042146 65 ------PLQKFTGHEQGIS------------------------------------DLATIRLWDVPTATSLKTL--IGHT 100 (262)
Q Consensus 65 ------~~~~~~~~~~~v~------------------------------------~~~~i~v~d~~~~~~~~~~--~~~~ 100 (262)
....+......+. ....|++||+.+++..... ..|.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 0111111111111 1247999999887754433 2466
Q ss_pred cceEEEEEeCCCCEEEeecCCC-----eEEEEECCCCeeeeeee-c-CCC---CeeeEEEcc--CCCEEEEEeCCCeEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNE-----TIRIWDIKTGKCLKVLP-A-HSD---PVTAIDFNR--DGTMIVTSSYDGLYRI 168 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~~~~~dg~i~~ 168 (262)
..+.+++|+|++++|++++.++ .|.+||+.+++....+. . +.. .+.+++|+| +|+++++++.|+.+++
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 7899999999999998877665 89999999883333332 2 222 346789999 9999999999998888
Q ss_pred EeCCC----------------------CCccEEEEE-cCCC----eEEEEecCCCceeeEEeccCCceeEEEEEEecCCC
Q 042146 169 LDAST----------------------PNGKFILVG-TLDN----TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG 221 (262)
Q Consensus 169 ~d~~~----------------------~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
|++.. ++++.|+.+ ..++ .|+.||+.+++ ...+.
T Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~------------------ 398 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT------------------ 398 (706)
T ss_dssp EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC------------------
T ss_pred EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc------------------
Confidence 87642 556555443 3333 56666666554 22222
Q ss_pred eeEEccccceEEEEEcCCCCeEEEeeecCC--CcEEEEeecc
Q 042146 222 KYIVSHRDPVISVASHPAKNIIASGALDND--RTMKIWTQEK 261 (262)
Q Consensus 222 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d--~~i~iw~~~~ 261 (262)
+...+.+++|+|++++|+.++.+.+ +.|++|+++.
T Consensus 399 -----~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 399 -----PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp -----CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred -----CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 5567889999999998887752111 5699999764
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=3.7e-19 Score=139.05 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=134.5
Q ss_pred CCCceeeec--ccccceecccCc-CceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 3 SDRSLESFR--PYTLTQTLNGHL-RAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
.|++|..|+ ..+.+..+..+. ..+..++|+|+++++ +++..++.|.+||+.
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~------------------------- 73 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD------------------------- 73 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-------------------------
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-------------------------
Confidence 467788886 345666665443 257899999999865 455677888888654
Q ss_pred ceeEEEEecCCCccceeccc-C-----CcceEEEEEeCCCCEEEeecCC------------CeEEEEECCCCee---eee
Q 042146 79 LATIRLWDVPTATSLKTLIG-H-----TNYVFCINFNPQSNRIVSDTFN------------ETIRIWDIKTGKC---LKV 137 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~ 137 (262)
+++.+..+.. + ...+..++|+|+++++++++.+ +.|.+||+.+++. +..
T Consensus 74 ----------t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 74 ----------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp ----------TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred ----------CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 3333322221 1 2336789999999999988865 8999999988543 333
Q ss_pred eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------------------------
Q 042146 138 LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------------------------- 173 (262)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------------------------- 173 (262)
+. +...+.+++|+|+++ +++++. .|.+||+.+
T Consensus 144 ~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 144 FP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred cc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 43 344689999999999 555543 388898754
Q ss_pred --------------------------------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146 174 --------------------------------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208 (262)
Q Consensus 174 --------------------------------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 208 (262)
| ++++++++ ++.|.+||+.+++.+..+.
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----- 292 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----- 292 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----
Confidence 1 34444444 5677777777776666554
Q ss_pred eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
....+.+++|+|+++.|++++ .++.|++||+++
T Consensus 293 ------------------~~~~~~~~~~s~dg~~l~~~~--~~~~v~v~d~~~ 325 (349)
T 1jmx_B 293 ------------------LDHTYYCVAFDKKGDKLYLGG--TFNDLAVFNPDT 325 (349)
T ss_dssp ------------------CSSCCCEEEECSSSSCEEEES--BSSEEEEEETTT
T ss_pred ------------------CCCCccceEECCCCCEEEEec--CCCeEEEEeccc
Confidence 333567899999999888887 789999999864
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.7e-19 Score=137.45 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=137.3
Q ss_pred CCceeeec--c-cccceecccC-cCceEEEEEccCCCeEEEec--CCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146 4 DRSLESFR--P-YTLTQTLNGH-LRAVSYVKFSHDGRLLTSSS--AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77 (262)
Q Consensus 4 d~~i~~~~--~-~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (262)
++.|..|+ . .+.......| ...+.+++|+|++++|++++ .++...||.
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~-------------------------- 114 (297)
T 2ojh_A 61 EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL-------------------------- 114 (297)
T ss_dssp TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE--------------------------
T ss_pred CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE--------------------------
Confidence 55666665 3 4455555555 47789999999999999998 445555553
Q ss_pred cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCC
Q 042146 78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
++..++. ...+..+ ..+..++|+|++++++ ++..++.+.+|++.. +.....+..+...+.+++|+|+++
T Consensus 115 -------~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 115 -------LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp -------EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred -------EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 3333333 2333333 3488899999999877 777899999998532 233455666788899999999999
Q ss_pred EEEEEe-CCCeEEEEeCCC---------------------CCccEEEEEcCC-----------CeEEEEecCCCceeeEE
Q 042146 156 MIVTSS-YDGLYRILDAST---------------------PNGKFILVGTLD-----------NTLRLWNYSTRKILKTY 202 (262)
Q Consensus 156 ~l~~~~-~dg~i~~~d~~~---------------------~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~ 202 (262)
.|+.++ .++.+.+|++.. |++++|++++.+ +.|++||+.+++.....
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 887766 588999998752 788988888765 56999999887654333
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL 248 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 248 (262)
.. .+|...+..++|+|+++.|++++.
T Consensus 266 ~~--------------------~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 266 DL--------------------FGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EE--------------------EESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cc--------------------CCCCcccccceECCCCCEEEEEEe
Confidence 21 016778899999999999998873
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=9.6e-19 Score=149.31 Aligned_cols=211 Identities=12% Similarity=0.127 Sum_probs=146.0
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC---CCCCCccccCCcccc--ccceeEEEEecCC-----Cccc
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST---PPSPLQKFTGHEQGI--SDLATIRLWDVPT-----ATSL 93 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~v--~~~~~i~v~d~~~-----~~~~ 93 (262)
..|.+++|+|| +.++.+. ++.|++||+.+....... .......+......+ .....|++||+.+ ++..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence 56999999999 6555553 599999998764321111 111111222222112 1234899999988 7665
Q ss_pred eecccCCcc--------------eEEEEEeCCCCEEEeec---------------------------------CCCeEEE
Q 042146 94 KTLIGHTNY--------------VFCINFNPQSNRIVSDT---------------------------------FNETIRI 126 (262)
Q Consensus 94 ~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~v 126 (262)
.....+... +.+++|+|||++|++++ .+..|.+
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 544433332 48899999999999887 4468999
Q ss_pred EECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCCC-------------------------C
Q 042146 127 WDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAST-------------------------P 174 (262)
Q Consensus 127 wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~-------------------------~ 174 (262)
||+.+++...... .|...+.+++|+|+|+.|++++.++ .|.+||+.+ |
T Consensus 240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp 319 (706)
T 2z3z_A 240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLP 319 (706)
T ss_dssp EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeec
Confidence 9999887654432 4667899999999999999988776 899998654 5
Q ss_pred --CccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE-EEEcCCCCeEEEeeecC
Q 042146 175 --NGKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS-VASHPAKNIIASGALDN 250 (262)
Q Consensus 175 --~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d~ 250 (262)
++++++++..+|.++||.+. ++..+..+.. +...+.. ++|+|+++.|+.++. .
T Consensus 320 ~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~----------------------~~~~v~~~~~~spdg~~l~~~~~-~ 376 (706)
T 2z3z_A 320 GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK----------------------GEWEVTNFAGFDPKGTRLYFEST-E 376 (706)
T ss_dssp TCSSEEEEEECTTSSCEEEEEETTSCEEEECCC----------------------SSSCEEEEEEECTTSSEEEEEES-S
T ss_pred CCCCEEEEEEccCCccEEEEEECCCCEEEecCC----------------------CCeEEEeeeEEcCCCCEEEEEec-C
Confidence 78888888888888888776 5666666654 5566766 799999998877663 3
Q ss_pred CC--cEEEEee
Q 042146 251 DR--TMKIWTQ 259 (262)
Q Consensus 251 d~--~i~iw~~ 259 (262)
++ .+.||.+
T Consensus 377 ~~~~~~~l~~~ 387 (706)
T 2z3z_A 377 ASPLERHFYCI 387 (706)
T ss_dssp SCTTCBEEEEE
T ss_pred CCCceEEEEEE
Confidence 44 3455543
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=7.9e-20 Score=152.72 Aligned_cols=207 Identities=9% Similarity=-0.013 Sum_probs=138.1
Q ss_pred CcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCC--CCccccCCcccccc-------ceeEEEEecCC--
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPS--PLQKFTGHEQGISD-------LATIRLWDVPT-- 89 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~v~~-------~~~i~v~d~~~-- 89 (262)
+..+|.+++|+|||++||+++. ||+++||+++........... ...........+.. .....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 3668999999999999999887 999999998553221111111 11110011111111 11234443322
Q ss_pred -CccceecccCCcceEEEEEeCCCCE--EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC---
Q 042146 90 -ATSLKTLIGHTNYVFCINFNPQSNR--IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD--- 163 (262)
Q Consensus 90 -~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 163 (262)
+... .+... ..+...+|+|+++. +++++. +.+.+||+.+++....... .. .+++|+|||+.+++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETT
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCC
Confidence 2222 33222 23446688888753 444444 4555999998876555443 33 889999999999988877
Q ss_pred -CeEEEEeCCC-------------------CCccEEEEEcCCC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCC
Q 042146 164 -GLYRILDAST-------------------PNGKFILVGTLDN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG 221 (262)
Q Consensus 164 -g~i~~~d~~~-------------------~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
+.|++||+.+ |||+.|+++..++ .|++||+.+++.. .+..
T Consensus 174 ~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~----------------- 235 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL----------------- 235 (582)
T ss_dssp EEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-----------------
T ss_pred CeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-----------------
Confidence 7899999765 8999999888888 8999999988877 5554
Q ss_pred eeEEccccceEEEE--------EcCCCCeEEEeeecCCCcEEEEee
Q 042146 222 KYIVSHRDPVISVA--------SHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 222 ~~~~~~~~~v~~~~--------~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|...+..++ |+|+|.++++++ .|+.+++|++
T Consensus 236 -----~~~~~~~~~~~~~~~~~~spdg~~~~~~~--~~g~~~l~~~ 274 (582)
T 3o4h_A 236 -----PSKDFSSYRPTAITWLGYLPDGRLAVVAR--REGRSAVFID 274 (582)
T ss_dssp -----SCSHHHHHCCSEEEEEEECTTSCEEEEEE--ETTEEEEEET
T ss_pred -----CCcChhhhhhccccceeEcCCCcEEEEEE--cCCcEEEEEE
Confidence 333444444 999998888888 7899999986
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=3.2e-19 Score=158.30 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=162.9
Q ss_pred ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCC--CCCCCCCCCC--CccccCCcccc--ccceeEEEEec
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI--SNFDSTPPSP--LQKFTGHEQGI--SDLATIRLWDV 87 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~--~~~~~~~~~~v--~~~~~i~v~d~ 87 (262)
.....+.+|...+.++.|+++ .++++++.|+.+.+|.+... .......... ...+......+ .....|.+|++
T Consensus 194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~ 272 (1045)
T 1k32_A 194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNP 272 (1045)
T ss_dssp TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECT
T ss_pred CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecC
Confidence 444556899999999999998 67778888999999986531 1100100010 11111111111 12337899998
Q ss_pred CCCccceeccc-----------CCcceEEEEEe-CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCC
Q 042146 88 PTATSLKTLIG-----------HTNYVFCINFN-PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDG 154 (262)
Q Consensus 88 ~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~ 154 (262)
.. ..+..+.. |...+.+++|+ |+|+++++++ ++.|.+|++..++... +..|.. .+..++|+ +|
T Consensus 273 ~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 273 DT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SE
T ss_pred Cc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CC
Confidence 43 33334443 34468999999 9999998887 7899999998776543 556777 89999999 99
Q ss_pred CEEEEEeCCCeEE-EEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146 155 TMIVTSSYDGLYR-ILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214 (262)
Q Consensus 155 ~~l~~~~~dg~i~-~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
+.|+.++.++.+. +||+.. |++++|++++.++.|++||+.+++....+..
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---------- 418 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---------- 418 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------
T ss_pred CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC----------
Confidence 9999999888888 888754 8999999999999999999999988777655
Q ss_pred EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC--------CCcEEEEeecc
Q 042146 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN--------DRTMKIWTQEK 261 (262)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------d~~i~iw~~~~ 261 (262)
|...+..++|+|+|++|++++.+. ++.|++|++..
T Consensus 419 ------------~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 419 ------------REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp ------------SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred ------------CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 777889999999999999887321 24899999864
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=7.7e-20 Score=156.40 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=94.3
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC-----Cc--cccCCccccc------------cceeEEEE
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP-----LQ--KFTGHEQGIS------------DLATIRLW 85 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~--~~~~~~~~v~------------~~~~i~v~ 85 (262)
.+.+++|+|||+++++ +.||+|++||+.+........... +. .+......+. ....+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997766 789999999987653321111110 11 1111111111 12478899
Q ss_pred ecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe------------------
Q 042146 86 DVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV------------------ 145 (262)
Q Consensus 86 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v------------------ 145 (262)
|+.+++. +.....|...+..++|+|||++|+.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9988875 2223345556889999999999999885 799999999887766555444333
Q ss_pred eeEEEccCCCEEEEEeCCC
Q 042146 146 TAIDFNRDGTMIVTSSYDG 164 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg 164 (262)
.+++|+|||+.|++++.++
T Consensus 176 ~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp EEEEECTTSSEEEEEEEEC
T ss_pred ceEEECCCCCEEEEEEECC
Confidence 7899999999999887553
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=1.4e-18 Score=154.22 Aligned_cols=226 Identities=14% Similarity=0.058 Sum_probs=162.7
Q ss_pred CCceeeec--c-cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC------------CCcc
Q 042146 4 DRSLESFR--P-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS------------PLQK 68 (262)
Q Consensus 4 d~~i~~~~--~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------------~~~~ 68 (262)
|++...|. . ......+..|. .+...+|+|+|++|+.+ .++.|.+|+++........... ....
T Consensus 223 dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~ 300 (1045)
T 1k32_A 223 DGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFA 300 (1045)
T ss_dssp TSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGE
T ss_pred cCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccce
Confidence 45444443 2 33455565555 46778999999999988 4899999998432211101000 0111
Q ss_pred --cc-CCcccc--ccceeEEEEecCCCccceecccCCc-ceEEEEEeCCCCEEEeecCCCeEE-EEECCCCeeeeeeecC
Q 042146 69 --FT-GHEQGI--SDLATIRLWDVPTATSLKTLIGHTN-YVFCINFNPQSNRIVSDTFNETIR-IWDIKTGKCLKVLPAH 141 (262)
Q Consensus 69 --~~-~~~~~v--~~~~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~ 141 (262)
+. .....+ .....+.+|+...+... .+..|.. .+..++|+ +++.++.++.++.+. +||+.+++... +..|
T Consensus 301 ~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~ 377 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN 377 (1045)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC
T ss_pred eeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC
Confidence 11 111111 11337889998776544 4556666 89999999 999999988888898 99998776544 3477
Q ss_pred CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCC----------eEEEE
Q 042146 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDN----------TLRLW 191 (262)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg----------~i~i~ 191 (262)
...+..++|+|+|++|++++.++.|++||+.+ |++++|++++.++ .|++|
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 88999999999999999999999999999865 7899998887654 89999
Q ss_pred ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
|+.+++ +..+.. |...+..++|+|+|+.|+.++ .++..++|+.
T Consensus 458 d~~~g~-~~~l~~----------------------~~~~~~~~~~spdG~~l~~~s--~~~~~~~~~~ 500 (1045)
T 1k32_A 458 DMEGRK-IFAATT----------------------ENSHDYAPAFDADSKNLYYLS--YRSLDPSPDR 500 (1045)
T ss_dssp ETTTTE-EEECSC----------------------SSSBEEEEEECTTSCEEEEEE--SCCCCCEECS
T ss_pred ECCCCc-EEEeeC----------------------CCcccCCceEcCCCCEEEEEe--cccCCcCcch
Confidence 999877 445544 667788899999999999998 7777777764
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=3.5e-18 Score=133.71 Aligned_cols=188 Identities=12% Similarity=0.197 Sum_probs=127.6
Q ss_pred ccCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc--cce
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT--SLK 94 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~--~~~ 94 (262)
..+...+..++|+|+|+ |++++. ++.|.+|+++ +++ .+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~-----------------------------------~g~~~~~~ 79 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQID-----------------------------------GQTAHKLN 79 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEE-----------------------------------TTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEec-----------------------------------CCcEEEee
Confidence 34556778899999999 555543 5777777552 222 333
Q ss_pred ecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCC-C--eeeeeeecC---------CCCeeeEEEccCCCEEEEEe
Q 042146 95 TLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKT-G--KCLKVLPAH---------SDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~ 161 (262)
.+..+...+..++|+|++++|++++ .++.|.+|++.. + +.+..+... ...+.+++|+|+++++++..
T Consensus 80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 3344566788999999999888777 789999999962 2 233333211 12478899999999666666
Q ss_pred CCCeEEEEeCCC------------------------CCccEEEE-EcCCCeEEEEecCC--Ccee--eEEeccCCceeEE
Q 042146 162 YDGLYRILDAST------------------------PNGKFILV-GTLDNTLRLWNYST--RKIL--KTYSGYTNSKYCI 212 (262)
Q Consensus 162 ~dg~i~~~d~~~------------------------~~~~~l~~-~~~dg~i~i~d~~~--~~~~--~~~~~~~~~~~~~ 212 (262)
.++.|.+|++.. |+++++++ +..++.|.+|++.. ++.. ..+.......
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~--- 236 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY--- 236 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC---
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC---
Confidence 789999999872 67885555 56778999998874 4432 2222111000
Q ss_pred EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.....+..++|+|+|++|++++. .++.|.+|+++
T Consensus 237 -------------~~~~~~~~i~~spdG~~l~v~~~-~~~~v~v~~~~ 270 (347)
T 3hfq_A 237 -------------TAHNGAAAIRLSHDGHFLYVSNR-GYNTLAVFAVT 270 (347)
T ss_dssp -------------CSCCEEEEEEECTTSCEEEEEEE-TTTEEEEEEEC
T ss_pred -------------CCCCcceeEEECCCCCEEEEEeC-CCCEEEEEEEC
Confidence 01245889999999998755442 58999999985
No 154
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.2e-16 Score=120.23 Aligned_cols=216 Identities=10% Similarity=0.193 Sum_probs=151.2
Q ss_pred ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-----C--CCCc--cccCCccc--ccc---ceeEEEE
Q 042146 20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-----P--SPLQ--KFTGHEQG--ISD---LATIRLW 85 (262)
Q Consensus 20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~--~~~~--~~~~~~~~--v~~---~~~i~v~ 85 (262)
.+|...+.+++++++++++++...++.|.+||.+......... . .... .+...... +.. ...|.+|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 4566789999999999988888889999999976421111000 0 0000 01011111 111 3478889
Q ss_pred ecCCCccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeC
Q 042146 86 DVPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 86 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
| .+++.+..+. .+...+..++++|+++++++...++.|.+||.. ++.+..+. .+...+..++++|+++++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 8 5566655553 234578999999999988888888999999964 55555553 34456899999999998888788
Q ss_pred CCeEEEEeCCC---------------------CCccEEEEEcCCC-eEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146 163 DGLYRILDAST---------------------PNGKFILVGTLDN-TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN 220 (262)
Q Consensus 163 dg~i~~~d~~~---------------------~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (262)
++.|++||... ++++++++...++ .|.+||. +++.+..+..+.
T Consensus 184 ~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-------------- 248 (286)
T 1q7f_A 184 AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-------------- 248 (286)
T ss_dssp GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS--------------
T ss_pred CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC--------------
Confidence 99999999653 5677777777775 8999995 466666665421
Q ss_pred CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
....+.+++++|+++++++ + .|+.|++|++..
T Consensus 249 ------~~~~~~~i~~~~~g~l~vs-~--~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 ------KHAQCFDVALMDDGSVVLA-S--KDYRLYIYRYVQ 280 (286)
T ss_dssp ------CCSCEEEEEEETTTEEEEE-E--TTTEEEEEECSC
T ss_pred ------CCCcceeEEECCCCcEEEE-C--CCCeEEEEEccc
Confidence 2234779999999987777 6 689999999854
No 155
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=1.8e-17 Score=129.12 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=105.8
Q ss_pred CCcceEEEEEeCCCCEEEeecCC-CeEEEEECC--CCe--eeeeeecCCCCeeeEEEccCCCEEEEEeC-CCeEEEEeC-
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFN-ETIRIWDIK--TGK--CLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DGLYRILDA- 171 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~- 171 (262)
+...+.+++|+|+++++++++.+ +.|.+|++. +++ .+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 55678889999999988887776 999999997 444 344454433 7899999999998877664 889999998
Q ss_pred --CC-------------------CCccEEEEEc-CCCeEEEEecCC-CceeeEE--eccCCceeEEEEEEecCCCeeEEc
Q 042146 172 --ST-------------------PNGKFILVGT-LDNTLRLWNYST-RKILKTY--SGYTNSKYCISSTFSVTNGKYIVS 226 (262)
Q Consensus 172 --~~-------------------~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
.. ++++++++++ .++.|++||+.+ ++..... .... .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~ 175 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT-------------------V 175 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC-------------------S
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc-------------------C
Confidence 32 7888777776 889999999987 5543322 1000 0
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
....+..++|+|++++|++++. .++.|++|+++
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~-~~~~i~~~~~~ 208 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNE-LNSSVDVWELK 208 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEET-TTTEEEEEESS
T ss_pred CCCCcceEEECCCCCEEEEEeC-CCCEEEEEEec
Confidence 3346788999999997765542 58999999985
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=1.2e-17 Score=139.59 Aligned_cols=220 Identities=9% Similarity=0.071 Sum_probs=148.2
Q ss_pred CCceeeec--ccccceecccCc-CceEEEEEccCCCeEEEecC---CCeEEEeecCC--CCC-CCCCCCCC--CccccCC
Q 042146 4 DRSLESFR--PYTLTQTLNGHL-RAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSS--ISN-FDSTPPSP--LQKFTGH 72 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~--~~~-~~~~~~~~--~~~~~~~ 72 (262)
|+++..|. ..+. +.+..|. ..+..++|+|| +.+++++. +...++|.+.. ... ........ ...+...
T Consensus 43 ~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~d 120 (582)
T 3o4h_A 43 EGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT 120 (582)
T ss_dssp TTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEEC
T ss_pred CCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCC
Confidence 56655554 3333 4444455 68999999999 77777664 45566665432 111 01111111 1111111
Q ss_pred cccccc----ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC----CeEEEEECCCCeeeeeeecCCCC
Q 042146 73 EQGISD----LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN----ETIRIWDIKTGKCLKVLPAHSDP 144 (262)
Q Consensus 73 ~~~v~~----~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~ 144 (262)
...+.. ...+.+||+.+++.......+ . .+++|+|||+++++++.+ +.|++||+.+++.. .+..|...
T Consensus 121 g~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~ 196 (582)
T 3o4h_A 121 GEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGS 196 (582)
T ss_dssp SSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCE
T ss_pred CCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCc
Confidence 111111 114569999887655444333 2 789999999999988776 78999999888754 56678888
Q ss_pred eeeEEEccCCCEEEEEeCCC--eEEEEeCCC---------------------------CCccEEEEEcCCCeEEEEecCC
Q 042146 145 VTAIDFNRDGTMIVTSSYDG--LYRILDAST---------------------------PNGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~ 195 (262)
+..++|+|||+.|+++..++ .|++||+.+ |++..+++++.++.+++|++
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 99999999999999888888 899999654 57788888999999999998
Q ss_pred CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc---EEEEee
Q 042146 196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT---MKIWTQ 259 (262)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~---i~iw~~ 259 (262)
++... . ..+.+.+++|+ +++++++++ .+.. +.+|+.
T Consensus 275 g~~~~---~----------------------~~~~v~~~~~s-dg~~l~~~s--~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 275 GERVE---A----------------------PQGNHGRVVLW-RGKLVTSHT--SLSTPPRIVSLPS 313 (582)
T ss_dssp TEEEC---C----------------------CSSEEEEEEEE-TTEEEEEEE--ETTEEEEEEEETT
T ss_pred CCeec---c----------------------CCCceEEEEec-CCEEEEEEc--CCCCCCeEEEEcC
Confidence 65443 1 34567899999 999888887 4433 555543
No 157
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=2.1e-15 Score=117.23 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=157.0
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc-cCC
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI-GHT 100 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~-~~~ 100 (262)
-.+.+.+++++|+|+++++...++.+.+++..... .+..+.........|.+||..+++.+..+. .+.
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 90 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKF-----------VYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF 90 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTS-----------CBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcce-----------eecccccccccCCcEEEEECCCCeEEeccCCCcc
Confidence 35679999999999999998888765554333211 111111111233479999998888766554 344
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeee---------ecCCCCeeeEEEcc-CCCEEEEEe-CCCeEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVL---------PAHSDPVTAIDFNR-DGTMIVTSS-YDGLYRI 168 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~~ 168 (262)
.....++++|+++++++...++.|++||..... .+..+ ..+......++++| ++.++++.+ .++.|++
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 578999999999999998889999999976442 44444 23344688999999 788888876 6999999
Q ss_pred EeCCC-----------------------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146 169 LDAST-----------------------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218 (262)
Q Consensus 169 ~d~~~-----------------------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
||... ++ +.++++...++.|++||..+++.+..+.............+.+
T Consensus 171 ~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 171 FSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp ECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred EcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence 98442 45 6777777888999999999888888875322111111111111
Q ss_pred -------------------------CCCeeEE------ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 219 -------------------------TNGKYIV------SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 219 -------------------------~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+.++. ++...+..++++|+|.++++.. .++.|++|+++.
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~--~~~~I~~~~~~~ 322 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA--HTNTVWKFTLTE 322 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES--SSCCEEEEEEEE
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC--CCCEEEEEeCCc
Confidence 1222221 2445689999999998777777 789999999864
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=6.6e-17 Score=127.44 Aligned_cols=219 Identities=10% Similarity=0.106 Sum_probs=135.3
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecC-CCCCCCC----CCCCCC-ccccCCcc--cc--c--------------
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS-SISNFDS----TPPSPL-QKFTGHEQ--GI--S-------------- 77 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~----~~~~~~-~~~~~~~~--~v--~-------------- 77 (262)
....+..++|+|++++|++++.+ .|.+|++. ....... ....+. ..+..... .+ .
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34468899999999999998887 99999986 3321100 001110 11111111 11 0
Q ss_pred cceeEEEEecCC-Cccceecc----cCCcceEEEEEeCCCCEEEeec-CCCeEEEEECC-CCeee--eeee--cCCCCee
Q 042146 78 DLATIRLWDVPT-ATSLKTLI----GHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIK-TGKCL--KVLP--AHSDPVT 146 (262)
Q Consensus 78 ~~~~i~v~d~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~--~~~~--~~~~~v~ 146 (262)
..+.+.+|++.. ++....+. .+...+.+++|+|+|++++++. .++.|.+||+. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 234689999973 55433332 2456799999999999887765 46799999998 67543 2333 2356789
Q ss_pred eEEEccCCCEEEEEeC-CCeEEEEeCCC---------------------------------------CCccEEEEEcCCC
Q 042146 147 AIDFNRDGTMIVTSSY-DGLYRILDAST---------------------------------------PNGKFILVGTLDN 186 (262)
Q Consensus 147 ~~~~~~~~~~l~~~~~-dg~i~~~d~~~---------------------------------------~~~~~l~~~~~dg 186 (262)
.++|+|+|+++++++. ++.|.+|++.. |++++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999998887774 68888886532 2333333332211
Q ss_pred ------eEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcC---CCCeEEEeeecCCCcEEE
Q 042146 187 ------TLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP---AKNIIASGALDNDRTMKI 256 (262)
Q Consensus 187 ------~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d~d~~i~i 256 (262)
.|.+|++. +++...... .+..+...+..++|+| ++++|++++. .++.|++
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~-------------------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~-~~~~v~v 336 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLF-------------------LSPTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEI 336 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEE-------------------EEECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEE
T ss_pred CCCCCCeEEEEEECCCCCEEEeee-------------------eeecCCCCcccceecCCCcCCCEEEEEEc-CCCeEEE
Confidence 45555543 233221100 0001334566789999 8999999873 2589999
Q ss_pred Eeecc
Q 042146 257 WTQEK 261 (262)
Q Consensus 257 w~~~~ 261 (262)
|+++.
T Consensus 337 ~~~~~ 341 (365)
T 1jof_A 337 YRWKD 341 (365)
T ss_dssp EEEET
T ss_pred EEEch
Confidence 99864
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.1e-17 Score=141.40 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=146.5
Q ss_pred CCCceeeec--ccccceecccCcC---ceEEEEEccCCCeEEEecC---------CCeEEEeecCCCCC---CCCCCCCC
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLR---AVSYVKFSHDGRLLTSSSA---------EKTLLTYSLSSISN---FDSTPPSP 65 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------d~~i~iw~~~~~~~---~~~~~~~~ 65 (262)
.|++|+.|+ ..+....+.+|.. .+.+++|||||++|++++. ++.|++||+++... ........
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~ 113 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQ 113 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBC
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccc
Confidence 477888876 3445555555544 4899999999999999876 78999999987544 22211111
Q ss_pred CccccCCccccc--cceeEEEEecCCCccceec-ccCCcce-----------------EEEEEeCCCCEEEeecCCC---
Q 042146 66 LQKFTGHEQGIS--DLATIRLWDVPTATSLKTL-IGHTNYV-----------------FCINFNPQSNRIVSDTFNE--- 122 (262)
Q Consensus 66 ~~~~~~~~~~v~--~~~~i~v~d~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg--- 122 (262)
...+......+. ....|++|++.+++..... .++...| .+++|+|||++|++++.|.
T Consensus 114 ~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~ 193 (719)
T 1z68_A 114 YLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI 193 (719)
T ss_dssp CEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS
T ss_pred cceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC
Confidence 112222222221 2338999999887765432 2222222 4899999999999887552
Q ss_pred -------------------------------eEEEEECCCCeee--------eeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146 123 -------------------------------TIRIWDIKTGKCL--------KVLPAHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 123 -------------------------------~i~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
.|++||+.+++.. ..+..|...+..++|+||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999887642 1233577789999999998777764432
Q ss_pred ----CeEEEEe----CCC-----------------------------CCccEEEE--EcCCC--eEEEEecCCCceeeEE
Q 042146 164 ----GLYRILD----AST-----------------------------PNGKFILV--GTLDN--TLRLWNYSTRKILKTY 202 (262)
Q Consensus 164 ----g~i~~~d----~~~-----------------------------~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~ 202 (262)
..|.+|| +.+ |+++.++. +..+| .|.+||+.+++ ...+
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~l 352 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQI 352 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEEC
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEec
Confidence 2488888 322 34443332 33344 45566665554 2233
Q ss_pred eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC----CCcEEEEeec
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN----DRTMKIWTQE 260 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~----d~~i~iw~~~ 260 (262)
.. +...+..+.++ +++.|+..+. . ++.+++|.++
T Consensus 353 t~----------------------~~~~v~~~~~~-d~~~i~~~~~-~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 353 TS----------------------GKWEAINIFRV-TQDSLFYSSN-EFEEYPGRRNIYRIS 390 (719)
T ss_dssp SC----------------------SSSCEEEEEEE-CSSEEEEEES-CGGGCTTCBEEEEEE
T ss_pred cc----------------------CceEEEEEEEE-eCCEEEEEEe-cCCCCCceEEEEEEe
Confidence 22 44456677777 7776666651 2 4889999875
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=3.5e-17 Score=127.14 Aligned_cols=198 Identities=13% Similarity=0.118 Sum_probs=136.8
Q ss_pred CeEEEecCCCeEEEeecCCCCCCCC---CC---CCCCccccCCcccc--c--cceeEEEEecCCCccceeccc-C----C
Q 042146 36 RLLTSSSAEKTLLTYSLSSISNFDS---TP---PSPLQKFTGHEQGI--S--DLATIRLWDVPTATSLKTLIG-H----T 100 (262)
Q Consensus 36 ~~l~s~~~d~~i~iw~~~~~~~~~~---~~---~~~~~~~~~~~~~v--~--~~~~i~v~d~~~~~~~~~~~~-~----~ 100 (262)
++|++++.++.|.+||+.+.+.... .. ......+......+ . ....|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999876432211 11 01111121111111 1 123899999999887765542 1 2
Q ss_pred cceEEEEEeCCCCEEEeec------------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 101 NYVFCINFNPQSNRIVSDT------------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
..+..++|+|++++++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2577899999999988885 579999999999888877764 5567899999999988888 688999
Q ss_pred EeCCC-------------------CCccEEEEEcCC-C-----------------------eEEEEecCCCceeeEEecc
Q 042146 169 LDAST-------------------PNGKFILVGTLD-N-----------------------TLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 169 ~d~~~-------------------~~~~~l~~~~~d-g-----------------------~i~i~d~~~~~~~~~~~~~ 205 (262)
||+.+ +++..++..+.. + .|.+||+.+++.. .+..
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~- 236 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV- 236 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-
Confidence 99875 333433333222 2 4678888887765 3221
Q ss_pred CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+...+.+++|+|++++++++. +.|++||++.
T Consensus 237 -------------------~~~~~~~~~~~~s~dg~~l~~~~----~~v~~~d~~~ 269 (337)
T 1pby_B 237 -------------------RIMDVFYFSTAVNPAKTRAFGAY----NVLESFDLEK 269 (337)
T ss_dssp -------------------EECSSCEEEEEECTTSSEEEEEE----SEEEEEETTT
T ss_pred -------------------CCCCCceeeEEECCCCCEEEEeC----CeEEEEECCC
Confidence 01556788999999999998873 7899999753
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=3.5e-17 Score=129.83 Aligned_cols=239 Identities=13% Similarity=0.070 Sum_probs=145.6
Q ss_pred eeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCC--ccc--cCCccc---
Q 042146 7 LESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPL--QKF--TGHEQG--- 75 (262)
Q Consensus 7 i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~--~~~--~~~~~~--- 75 (262)
|+.++ ..+..+...+|...+....|+||++.|+.++.++.|++||+.+........ .... ..+ ......
T Consensus 62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 55554 344555556666666678899999999999999999999987643211100 0000 000 000000
Q ss_pred ----------------------cccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCC------CeEEE
Q 042146 76 ----------------------ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFN------ETIRI 126 (262)
Q Consensus 76 ----------------------v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~v 126 (262)
......|.+||+.+++.. .+..+...+..++|+| +++.|+....+ ..|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (388)
T 3pe7_A 142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL 220 (388)
T ss_dssp EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred ccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence 011247999999887643 4445667789999999 99988776643 37888
Q ss_pred EECCCCeeeeeeecCC--CCeeeEEEccCCCEEEEEeC-CC----eEEEEeCCC-------------------------C
Q 042146 127 WDIKTGKCLKVLPAHS--DPVTAIDFNRDGTMIVTSSY-DG----LYRILDAST-------------------------P 174 (262)
Q Consensus 127 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~-------------------------~ 174 (262)
+|+..++. ..+..+. ..+...+|+|+|+.|+..+. ++ .|.+||+.+ |
T Consensus 221 ~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp 299 (388)
T 3pe7_A 221 INEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG 299 (388)
T ss_dssp EETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE
T ss_pred EeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc
Confidence 88876544 3333343 25788999999997755443 22 399999865 3
Q ss_pred CccEEEEE---------cCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146 175 NGKFILVG---------TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS 245 (262)
Q Consensus 175 ~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 245 (262)
+++.|+.. ..+..|++||+.+++.. .+..+..... .+.......+..++|+|+|+.|+.
T Consensus 300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~-----------~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWK-----------VFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCC-----------CBTTBSSTTCCCCEECTTSSEEEE
T ss_pred CCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCccc-----------ccccccccCCCCccCCCCCCEEEE
Confidence 33444432 34568888998876653 3332110000 000000114778899999998887
Q ss_pred eeecCCCcEEEEeec
Q 042146 246 GALDNDRTMKIWTQE 260 (262)
Q Consensus 246 ~~~d~d~~i~iw~~~ 260 (262)
++. .+|...||.++
T Consensus 368 ~s~-~~g~~~l~~~~ 381 (388)
T 3pe7_A 368 TSD-VHGKPALYLAT 381 (388)
T ss_dssp EEC-TTSSCEEEEEE
T ss_pred Eec-CCCceeEEEEE
Confidence 663 57888888764
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=3e-16 Score=122.52 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=105.3
Q ss_pred EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC-cceEEE
Q 042146 28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT-NYVFCI 106 (262)
Q Consensus 28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~ 106 (262)
.+++++++.++++++.++.|.+||+. +++.+..+..+. ..+..+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 48 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVA-----------------------------------SDTVYKSCVMPDKFGPGTA 48 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETT-----------------------------------TTEEEEEEECSSCCSSCEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECC-----------------------------------CCcEEEEEecCCCCCCcee
Confidence 45678889999999999998888654 344444433222 246789
Q ss_pred EEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCC------CCeeeEEEccCCCEEEEEeCC------------CeEE
Q 042146 107 NFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHS------DPVTAIDFNRDGTMIVTSSYD------------GLYR 167 (262)
Q Consensus 107 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d------------g~i~ 167 (262)
+|+|+++++ +++..++.|.+||+.+++.+..+..+. ..+..++|+|+|+++++++.+ +.|.
T Consensus 49 ~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~ 128 (349)
T 1jmx_B 49 MMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 128 (349)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred EECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEE
Confidence 999999865 456678999999999998877765432 237899999999999998865 8999
Q ss_pred EEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 168 ILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 168 ~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
+||+.+ ++++ +++++. .|++||+.+++.+..+...
T Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 129 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp EEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECST
T ss_pred EEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccccc
Confidence 999754 6777 555543 4999999999888777543
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3.9e-16 Score=123.80 Aligned_cols=194 Identities=15% Similarity=0.048 Sum_probs=133.4
Q ss_pred ccccceecccCcCceEE-----EEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEE
Q 042146 12 PYTLTQTLNGHLRAVSY-----VKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLW 85 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~ 85 (262)
.......+..|...... .+|+|||++|+.++. ++...|| +|
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~---------------------------------~~ 65 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYY---------------------------------LL 65 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE---------------------------------EE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEE---------------------------------EE
Confidence 34456677777766666 789999999998887 6643333 55
Q ss_pred ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEE--EccCCCEEEEE---
Q 042146 86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID--FNRDGTMIVTS--- 160 (262)
Q Consensus 86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~--- 160 (262)
|+.+++.......+...+..+.|+|+++.|+.++.++.|++||+.+++.......+...+.... ++|++++++..
T Consensus 66 d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 145 (388)
T 3pe7_A 66 DLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR 145 (388)
T ss_dssp ETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred eCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc
Confidence 6666666555555555555678999999999999899999999999887766665655554443 48899888743
Q ss_pred -------------------eCCCeEEEEeCCC-------------------C-CccEEEEEcCC------CeEEEEecCC
Q 042146 161 -------------------SYDGLYRILDAST-------------------P-NGKFILVGTLD------NTLRLWNYST 195 (262)
Q Consensus 161 -------------------~~dg~i~~~d~~~-------------------~-~~~~l~~~~~d------g~i~i~d~~~ 195 (262)
..+..|.+||+.+ | +++.|+....+ ..|.++|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 2446788999775 6 77777666543 2677777654
Q ss_pred CceeeEEeccCCceeEEEEEEecCCCeeEEccc--cceEEEEEcCCCCeEEEeeecCCC---cEEEEeecc
Q 042146 196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR--DPVISVASHPAKNIIASGALDNDR---TMKIWTQEK 261 (262)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~~ 261 (262)
++.. .+.. +. ..+..++|+|+|+.|+..+.+.++ .|++|++..
T Consensus 226 ~~~~-~l~~----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 226 TNMR-KVKT----------------------HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp CCCE-ESCC----------------------CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred CceE-Eeee----------------------CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence 4332 2222 22 357788999999988765532122 399998753
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=140.87 Aligned_cols=177 Identities=13% Similarity=0.176 Sum_probs=121.4
Q ss_pred EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc---ceE
Q 042146 28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN---YVF 104 (262)
Q Consensus 28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~---~v~ 104 (262)
+++|+|+++++++ +.|+.|++||+. +++....+..+.. .+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~-----------------------------------~g~~~~~~~~~~~~~~~~~ 63 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIE-----------------------------------TGQSYTILSNRTMKSVNAS 63 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESS-----------------------------------SCCEEEEECHHHHHTTTCS
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcC-----------------------------------CCcEEEEEcccccccccee
Confidence 7899999975555 468888888553 4444444433332 388
Q ss_pred EEEEeCCCCEEEeecC---------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146 105 CINFNPQSNRIVSDTF---------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 173 (262)
+++|+|||++|++++. ++.|++||+.+++.+.... ....+..++|||||+.|+.+. ++.|++||+..
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 9999999999998876 6899999999887632111 135689999999999999886 78999998731
Q ss_pred ------------------------------------CCccEEEEEcCCC-------------------------------
Q 042146 174 ------------------------------------PNGKFILVGTLDN------------------------------- 186 (262)
Q Consensus 174 ------------------------------------~~~~~l~~~~~dg------------------------------- 186 (262)
|||++|+.++.|.
T Consensus 142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~ 221 (719)
T 1z68_A 142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN 221 (719)
T ss_dssp CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence 6778888876542
Q ss_pred ---eEEEEecCCCcee--eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC--CcEEEEe
Q 042146 187 ---TLRLWNYSTRKIL--KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND--RTMKIWT 258 (262)
Q Consensus 187 ---~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d--~~i~iw~ 258 (262)
.|++||+.+++.. ..+... ..+.+|...+..++|+||++++++.....+ ..|.+|+
T Consensus 222 ~~~~l~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 222 PVVRIFIIDTTYPAYVGPQEVPVP----------------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CEEEEEEEESSCHHHHCCEECCCC----------------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CeeEEEEEECCCCCccceeEccCC----------------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 6677777766542 111000 001126778899999999887777541112 2477787
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=1.4e-15 Score=128.82 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=116.6
Q ss_pred Cceeeeccc----ccceeccc-----CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146 5 RSLESFRPY----TLTQTLNG-----HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75 (262)
Q Consensus 5 ~~i~~~~~~----~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262)
..|+.++.. .....+.. |...+.+++|+|||+.|++++.+.. .. ..
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------------~~-------------~~ 156 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT------------GE-------------GP 156 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC------------SS-------------ST
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc------------CC-------------CC
Confidence 456666543 44555655 6778999999999999999886520 00 00
Q ss_pred cccceeEEEEecCCC-----ccceecc-cCCcceEEEEEeCCCCEEEeecCC--------CeEEEEECC-CC---eeeee
Q 042146 76 ISDLATIRLWDVPTA-----TSLKTLI-GHTNYVFCINFNPQSNRIVSDTFN--------ETIRIWDIK-TG---KCLKV 137 (262)
Q Consensus 76 v~~~~~i~v~d~~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~-~~---~~~~~ 137 (262)
-.....|++||+.+. .....+. .+...+..++|+|||++|+.++.+ ..|.+||+. ++ +....
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred CCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 000114556666651 2333444 555678889999999999877644 379999998 56 44444
Q ss_pred eecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEeCCC----------------------------CCccEEEEEcCCCe
Q 042146 138 LPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDAST----------------------------PNGKFILVGTLDNT 187 (262)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~----------------------------~~~~~l~~~~~dg~ 187 (262)
...|...+..++|+|||++++++..++ .|.+||+.. +++.++++++. +.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 445578899999999999888888888 677776532 36778888888 88
Q ss_pred EEEE--ecCCCceeeEEec
Q 042146 188 LRLW--NYSTRKILKTYSG 204 (262)
Q Consensus 188 i~i~--d~~~~~~~~~~~~ 204 (262)
++|| |+.+++ +..+..
T Consensus 316 ~~l~~~d~~~~~-~~~l~~ 333 (662)
T 3azo_A 316 AVLGILDPESGE-LVDAAG 333 (662)
T ss_dssp CEEEEEETTTTE-EEECCS
T ss_pred cEEEEEECCCCc-EEEecC
Confidence 8888 555454 455554
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=4e-16 Score=133.87 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=83.9
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC---
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT--- 100 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~--- 100 (262)
....++.|+|++++++++ |+.|++||+.+ ++....+..|.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~-----------------------------------~~~~~~~~~~~~~~ 59 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEY-----------------------------------GNSSVFLENSTFDE 59 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTT-----------------------------------CCEEEEECTTTTTT
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCC-----------------------------------CceEEEEechhhhh
Confidence 346689999999999886 89988886643 33322233322
Q ss_pred --cceEEEEEeCCCCEEEeecCC---------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 101 --NYVFCINFNPQSNRIVSDTFN---------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 101 --~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
.....++|+|||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.|+.+. ++.|++|
T Consensus 60 ~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~ 137 (740)
T 4a5s_A 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK 137 (740)
T ss_dssp CCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred hcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEE
Confidence 223458899999999998875 56779999998764 4556778899999999999998884 7899999
Q ss_pred eCCC
Q 042146 170 DAST 173 (262)
Q Consensus 170 d~~~ 173 (262)
++..
T Consensus 138 ~~~~ 141 (740)
T 4a5s_A 138 IEPN 141 (740)
T ss_dssp SSTT
T ss_pred ECCC
Confidence 8643
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=2.5e-15 Score=118.22 Aligned_cols=226 Identities=12% Similarity=0.153 Sum_probs=152.1
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCC---------
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTP--------- 62 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~--------- 62 (262)
|+++..|+ ..+++.++..+..+ .++|+||++++++++ .++.|.+||....+......
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 56777776 45667777777666 899999999999886 36789999987543221110
Q ss_pred CCC-CccccCCcccc--c--c-ceeEEEEecCCCcccee-cccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCC-Ce
Q 042146 63 PSP-LQKFTGHEQGI--S--D-LATIRLWDVPTATSLKT-LIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKT-GK 133 (262)
Q Consensus 63 ~~~-~~~~~~~~~~v--~--~-~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~ 133 (262)
..+ ...+......+ . . ...|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 000 01111111111 1 1 34799999999888776 5432 2 2335677765 6778888899999999865 54
Q ss_pred eee------eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------------CC
Q 042146 134 CLK------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------------PN 175 (262)
Q Consensus 134 ~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------------~~ 175 (262)
... .+.....++ .+.++|++..++..+.++.+.++|+.. ++
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 431 222222332 344567777777778888899988631 34
Q ss_pred ccEEEEEcC-----------CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146 176 GKFILVGTL-----------DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA 244 (262)
Q Consensus 176 ~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 244 (262)
++.++++.. .+.|.+||+.+++.+.++.. +. +..++|+|++++|+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~----------------------~~--p~~ia~spdg~~l~ 320 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG----------------------RD--ALSMTIDQQRNLML 320 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC----------------------TT--CCEEEEETTTTEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec----------------------CC--eeEEEECCCCCEEE
Confidence 455555432 34799999999999998875 44 88999999999999
Q ss_pred EeeecCCCcEEEEeecc
Q 042146 245 SGALDNDRTMKIWTQEK 261 (262)
Q Consensus 245 ~~~~d~d~~i~iw~~~~ 261 (262)
+++ . +.|.+||...
T Consensus 321 v~n--~-~~v~v~D~~t 334 (361)
T 2oiz_A 321 TLD--G-GNVNVYDISQ 334 (361)
T ss_dssp EEC--S-SCEEEEECSS
T ss_pred EeC--C-CeEEEEECCC
Confidence 887 5 9999999764
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=4.3e-14 Score=109.79 Aligned_cols=205 Identities=10% Similarity=0.109 Sum_probs=137.5
Q ss_pred CCCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146 3 SDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI 82 (262)
Q Consensus 3 ~d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i 82 (262)
.++++..+ ..+....+..+...+.+++|+|++++++++..++.|.+||.+.
T Consensus 25 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~---------------------------- 75 (333)
T 2dg1_A 25 SESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET---------------------------- 75 (333)
T ss_dssp CGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT----------------------------
T ss_pred ecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC----------------------------
Confidence 45556666 4445556667777889999999999888888888888886532
Q ss_pred EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC----CeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCE
Q 042146 83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN----ETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ 156 (262)
++.......+...+.+++++|+++++++...+ +.|.+||..+++....+. .+...+.+++++|++++
T Consensus 76 -------~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 76 -------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp -------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE
T ss_pred -------CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE
Confidence 22222122345679999999999988887766 689999998776543332 23457899999999987
Q ss_pred EEEEeC------CCeEEEEeCCC-------------------CCccEE-EEEcCCCeEEEEecCC-CceeeEEeccCCce
Q 042146 157 IVTSSY------DGLYRILDAST-------------------PNGKFI-LVGTLDNTLRLWNYST-RKILKTYSGYTNSK 209 (262)
Q Consensus 157 l~~~~~------dg~i~~~d~~~-------------------~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~ 209 (262)
+++... .+.|..+|... ++++.| ++.+.++.|.+||+.+ +..+..+...
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~---- 224 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT---- 224 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE----
T ss_pred EEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce----
Confidence 776653 35677776542 566644 4445678899999863 3333322100
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
...... ....+..+++++++.++++.. .++.|.+|+.+
T Consensus 225 ----~~~~~~-------~~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~~ 262 (333)
T 2dg1_A 225 ----IPYYFT-------GHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKR 262 (333)
T ss_dssp ----EEEECC-------SSSEEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred ----EEEecC-------CCCCCCceEECCCCCEEEEEc--CCCEEEEECCC
Confidence 000000 113567899999999888776 67899999874
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=2.6e-15 Score=127.21 Aligned_cols=227 Identities=8% Similarity=-0.036 Sum_probs=147.2
Q ss_pred ceecccCcCceEEEEEccCCCeEEEe--cCCCeEEEeecCCCCCC-CCCCC-CCCc---------c--cc--CCccc-cc
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSS--SAEKTLLTYSLSSISNF-DSTPP-SPLQ---------K--FT--GHEQG-IS 77 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~-~~~~~-~~~~---------~--~~--~~~~~-v~ 77 (262)
...+.+|...+..++|++++-++++. +.++...||........ ..... .... . +. ..... +.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34567899999999999988788887 67889999985322111 11000 1101 1 11 11111 11
Q ss_pred c----ceeEEEEecC--CCccceeccc-----CCcceEEEEEeCCCCEEEeecCC----------CeEEEEECCC-----
Q 042146 78 D----LATIRLWDVP--TATSLKTLIG-----HTNYVFCINFNPQSNRIVSDTFN----------ETIRIWDIKT----- 131 (262)
Q Consensus 78 ~----~~~i~v~d~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~----- 131 (262)
. ...|.++++. .......+.. |...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 1 1256666664 2033444544 66788999999999999988876 5899999987
Q ss_pred -Ceeeeeee-cCCCCeeeEEEccCCCEEEEEeCC--------CeEEEEeCC-C-----------------------CCcc
Q 042146 132 -GKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYD--------GLYRILDAS-T-----------------------PNGK 177 (262)
Q Consensus 132 -~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~-~-----------------------~~~~ 177 (262)
++. ..+. .+...+..++|+|||++|+.++.+ ..|.+||+. . |+++
T Consensus 176 ~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 176 RSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred CCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 554 4444 556778899999999999887755 378888876 2 6778
Q ss_pred EEEEEcCCC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEE
Q 042146 178 FILVGTLDN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMK 255 (262)
Q Consensus 178 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~ 255 (262)
+++++..++ .|++||+.+++.......+... ... . ..-.+..++|+|++.++++++ . +.++
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~p--~-----------w~~~~~~~~~~~~~~~~~~~~--~-~~~~ 317 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEF-AGP--L-----------WTPGMRWFAPLANGLIAVVHG--K-GAAV 317 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-SCC--C-----------CSTTCCSEEECTTSCEEEEEB--S-SSCE
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccc-cCc--c-----------ccccCceEeEeCCCEEEEEEE--c-CccE
Confidence 777777777 6677777666654333321100 000 0 001145789999999999998 7 9999
Q ss_pred EEeec
Q 042146 256 IWTQE 260 (262)
Q Consensus 256 iw~~~ 260 (262)
||.++
T Consensus 318 l~~~d 322 (662)
T 3azo_A 318 LGILD 322 (662)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99654
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=2.4e-15 Score=119.40 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=134.0
Q ss_pred EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCC--C-------------------ccccCCcccc-------
Q 042146 27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSP--L-------------------QKFTGHEQGI------- 76 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~--~-------------------~~~~~~~~~v------- 76 (262)
..+.|+|||++|+.++.++.|++|++.......... ... . ..+......+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 347899999999999999999999987643211100 000 0 0000000000
Q ss_pred -ccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCC------CeEEEEECCCCeeeeeeecC-CCCeee
Q 042146 77 -SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFN------ETIRIWDIKTGKCLKVLPAH-SDPVTA 147 (262)
Q Consensus 77 -~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~ 147 (262)
.....|.+||+.+++..... .+...+..+.|+| +++.++..+.+ ..|.+||+..++........ ...+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 12237999999887654433 4667789999999 78877655433 46889998766533332211 235788
Q ss_pred EEEccCCCEEEEEeCC-----CeEEEEeCCC-----------------C-CccEEEEEc----------------CCCeE
Q 042146 148 IDFNRDGTMIVTSSYD-----GLYRILDAST-----------------P-NGKFILVGT----------------LDNTL 188 (262)
Q Consensus 148 ~~~~~~~~~l~~~~~d-----g~i~~~d~~~-----------------~-~~~~l~~~~----------------~dg~i 188 (262)
++|+|+|+.|+.++.+ +.|.+||+.+ + ++++++.++ .++.|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 9999999987777544 4599999865 4 777776643 23678
Q ss_pred EEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc-----------ceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 189 RLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD-----------PVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 189 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
++||+.+++.. .+.. +.. .+..++|+|+++.|+.++. .++...+|
T Consensus 323 ~~~d~~~~~~~-~l~~----------------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~-~~~~~~l~ 378 (396)
T 3c5m_A 323 YVLNTKAKSAQ-KLCK----------------------HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD-FEGVPAIY 378 (396)
T ss_dssp EEEETTTTBCC-EEEE----------------------CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC-TTSSCEEE
T ss_pred EEEecccCceE-EccC----------------------CCCccccccccccCCCCCceEccCCCeEEEEec-CCCCceEE
Confidence 88888776643 2322 222 2456789999998887763 36777777
Q ss_pred eec
Q 042146 258 TQE 260 (262)
Q Consensus 258 ~~~ 260 (262)
.++
T Consensus 379 ~~~ 381 (396)
T 3c5m_A 379 IAD 381 (396)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 171
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.67 E-value=2.2e-13 Score=107.03 Aligned_cols=184 Identities=13% Similarity=0.198 Sum_probs=116.7
Q ss_pred ceecccCcCceEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCC------C-CCC-----------ccccCCcccc
Q 042146 16 TQTLNGHLRAVSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTP------P-SPL-----------QKFTGHEQGI 76 (262)
Q Consensus 16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~------~-~~~-----------~~~~~~~~~v 76 (262)
+.....+......+++ ++++|++++ .++.|.+|++.......... . .+. ..+......+
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 3344445566777887 777776665 68899999986532211100 0 000 1111111111
Q ss_pred cc----ceeEEEEecCCCcc------c-------eecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCee--ee
Q 042146 77 SD----LATIRLWDVPTATS------L-------KTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKC--LK 136 (262)
Q Consensus 77 ~~----~~~i~v~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~ 136 (262)
.. ...|.+|++..... + .....+......++|+|+++++++++ .++.|.+||+.+++. +.
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 11 22789998875432 1 11223445678999999999887666 689999999987754 22
Q ss_pred ee---ecCCCCeeeEEEccCCCEEEEEeCC--CeEEEEeCCC-----------------------CCccEEEEEc-CCCe
Q 042146 137 VL---PAHSDPVTAIDFNRDGTMIVTSSYD--GLYRILDAST-----------------------PNGKFILVGT-LDNT 187 (262)
Q Consensus 137 ~~---~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~-----------------------~~~~~l~~~~-~dg~ 187 (262)
.+ ..+......++|+|+|++|+++..+ +.|.+|++.. |++++|++++ .++.
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence 22 2233456899999999988776654 8999999851 7888888877 6789
Q ss_pred EEEE--ecCCCceeeE
Q 042146 188 LRLW--NYSTRKILKT 201 (262)
Q Consensus 188 i~i~--d~~~~~~~~~ 201 (262)
|.+| |..++++...
T Consensus 330 v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 330 IQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECTTTCCEEEC
T ss_pred EEEEEEECCCCcEeec
Confidence 9995 5556665443
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=3.8e-14 Score=107.16 Aligned_cols=163 Identities=10% Similarity=0.045 Sum_probs=123.6
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC-cceEEEEEeCCC
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT-NYVFCINFNPQS 112 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~ 112 (262)
.++.|++++.++.|.+||. ++++.+.++..+. ..+.++.+.|+|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~-----------------------------------~tG~~~w~~~~~~~~~~~~~~~~pdG 48 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINK-----------------------------------DTKEIVWEYPLEKGWECNSVAATKAG 48 (276)
T ss_dssp CCEEEEECTTCSEEEEEET-----------------------------------TTTEEEEEEECCTTCCCCEEEECTTS
T ss_pred CCcEEEeeCCCCEEEEEEC-----------------------------------CCCeEEEEeCCCccCCCcCeEECCCC
Confidence 4678999999998887754 4566666665554 467889999999
Q ss_pred CEEEeecCCCeEEEEECCCCeeeeeeecCC-CCeeeEEEccCCCEEEEEeC-CCeEEEEeCCC-----------------
Q 042146 113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHS-DPVTAIDFNRDGTMIVTSSY-DGLYRILDAST----------------- 173 (262)
Q Consensus 113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~----------------- 173 (262)
+++++ .++.|..||. +++.+..+..+. ..+.++.+.|+|+.+++.+. ++.+..+|...
T Consensus 49 ~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~ 125 (276)
T 3no2_A 49 EILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHA 125 (276)
T ss_dssp CEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGG
T ss_pred CEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccc
Confidence 98883 4778999998 899999988653 47889999999999999887 77777666422
Q ss_pred --------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146 174 --------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS 245 (262)
Q Consensus 174 --------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 245 (262)
++++++++...++.|..||.. |+.+.++... ..+.++...++++++++
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------------------~~~~~~~~~~~g~~~v~ 181 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-----------------------GTPFSSAFLDNGDCLVA 181 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-----------------------SCCCEEEECTTSCEEEE
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-----------------------CCccceeEcCCCCEEEE
Confidence 578899999999999999998 9999988752 22334556677777766
Q ss_pred eeecCCCcEEEEeec
Q 042146 246 GALDNDRTMKIWTQE 260 (262)
Q Consensus 246 ~~~d~d~~i~iw~~~ 260 (262)
++ .++.|..++.+
T Consensus 182 ~~--~~~~v~~~d~~ 194 (276)
T 3no2_A 182 CG--DAHCFVQLNLE 194 (276)
T ss_dssp CB--TTSEEEEECTT
T ss_pred eC--CCCeEEEEeCc
Confidence 66 55566665544
No 173
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=8e-14 Score=104.96 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=124.8
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc-cCCc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI-GHTN 101 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~-~~~~ 101 (262)
...+.+++++++++++++.. ++.|.+||.... . ...+. ....
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~-----------------------------------~-~~~~~~~~~~ 108 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN-----------------------------------N-QTVLPFDGLN 108 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCS-----------------------------------C-CEECCCCSCS
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc-----------------------------------e-EeeeecCCcC
Confidence 35678899999998666666 788888865331 1 11111 1224
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------- 173 (262)
.+..++++|+++++++...++.|.+|+..+.............+.+++++|+++++++...++.|.+||...
T Consensus 109 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~ 188 (270)
T 1rwi_B 109 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF 188 (270)
T ss_dssp SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC
T ss_pred CCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc
Confidence 578999999999888877788999998665543332223334678999999999777777788999999765
Q ss_pred ------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146 174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN 241 (262)
Q Consensus 174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 241 (262)
+++..+++...++.|.+|+............ +...+.+++++|++.
T Consensus 189 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 189 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT----------------------GLNTPLAVAVDSDRT 246 (270)
T ss_dssp SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC----------------------SCSCEEEEEECTTCC
T ss_pred cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC----------------------CCCCceeEEECCCCC
Confidence 4566666666677888888765433221111 335688999999999
Q ss_pred eEEEeeecCCCcEEEEeecc
Q 042146 242 IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 242 ~l~~~~~d~d~~i~iw~~~~ 261 (262)
++++.. .++.|+++++.+
T Consensus 247 l~v~~~--~~~~v~~~~~~~ 264 (270)
T 1rwi_B 247 VYVADR--GNDRVVKLTSLE 264 (270)
T ss_dssp EEEEEG--GGTEEEEECCCG
T ss_pred EEEEEC--CCCEEEEEcCCC
Confidence 888877 789999999864
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=1.6e-14 Score=112.88 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=73.1
Q ss_pred CceEEEEEccCCCeEEEecCC---CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 24 RAVSYVKFSHDGRLLTSSSAE---KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
..+..++|+|||++|+.++.+ +... |.+|++.+++....... .
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~---------------------------------l~~~~~~~g~~~~l~~~-~ 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSE---------------------------------IWVADLETLSSKKILEA-K 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEE---------------------------------EEEEETTTTEEEEEEEE-S
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcce---------------------------------EEEEECCCCceEEEEcC-C
Confidence 467889999999999887653 2322 33556665554433332 3
Q ss_pred cceEEEEEeCCCCEEEeecC---------------------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146 101 NYVFCINFNPQSNRIVSDTF---------------------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~---------------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (262)
. +..++|+|+++.|+.++. ...|.+||+.+++.+..+.. . .+..++|+|+
T Consensus 105 ~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd 181 (347)
T 2gop_A 105 N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD 181 (347)
T ss_dssp E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT
T ss_pred C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC
Confidence 3 899999999998887763 25799999998876455544 3 7889999999
Q ss_pred CCEEEEEeCC
Q 042146 154 GTMIVTSSYD 163 (262)
Q Consensus 154 ~~~l~~~~~d 163 (262)
| +++++..+
T Consensus 182 g-~~~~~~~~ 190 (347)
T 2gop_A 182 K-IVVNVPHR 190 (347)
T ss_dssp E-EEEEEECC
T ss_pred e-EEEEEecc
Confidence 9 77777654
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=1.2e-15 Score=130.86 Aligned_cols=140 Identities=12% Similarity=0.148 Sum_probs=95.9
Q ss_pred CCceeeec--ccccceecccCcCc-----eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRA-----VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 76 (262)
|++|+.|+ +.+....+.+|... ...++|||||++|+.++.+++++-.
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~-------------------------- 88 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH-------------------------- 88 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS--------------------------
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE--------------------------
Confidence 67777775 34455566666533 2447899999999999876543211
Q ss_pred ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCCe----------
Q 042146 77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDPV---------- 145 (262)
Q Consensus 77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v---------- 145 (262)
...+.+.+||+.+++.. .+..+...+...+|+|||+.|+.+. ++.|++||+.+++..+.. .++...+
T Consensus 89 ~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 11124678888877654 4566777899999999999999885 689999999887654321 2222222
Q ss_pred -------eeEEEccCCCEEEEEeCCCe-EEEEeC
Q 042146 146 -------TAIDFNRDGTMIVTSSYDGL-YRILDA 171 (262)
Q Consensus 146 -------~~~~~~~~~~~l~~~~~dg~-i~~~d~ 171 (262)
..+.|||||+.|+.++.|.+ +.+|++
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 35899999999998875443 555554
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=2.6e-13 Score=102.55 Aligned_cols=164 Identities=14% Similarity=0.099 Sum_probs=125.4
Q ss_pred CCCCceeeec--ccccceecccCc-CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146 2 SSDRSLESFR--PYTLTQTLNGHL-RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78 (262)
Q Consensus 2 s~d~~i~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (262)
+.|+.|..++ +.+.+.++..+. ..+.++.++|+|++|++ .++.|..||.
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-------------------------- 63 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-------------------------- 63 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT--------------------------
T ss_pred CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC--------------------------
Confidence 3577777775 566777777665 47899999999998883 3566666644
Q ss_pred ceeEEEEecCCCccceecccC-CcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeec------CCCCeeeEEE
Q 042146 79 LATIRLWDVPTATSLKTLIGH-TNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPA------HSDPVTAIDF 150 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~ 150 (262)
+++.+..+..+ ...+.++.+.|+|+++++.+. ++.|..+|. +++.+..+.. +......+++
T Consensus 64 ----------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 64 ----------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp ----------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred ----------CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence 34444444433 246788999999999999877 778888885 6777766642 1124556778
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 151 NRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.++|+++++...++.|..||... ++++.++++..++.|..+|..+|+.+.++..
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 89999999999999999999765 6888999998888999999999999999875
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=3.3e-14 Score=121.19 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=119.4
Q ss_pred cCcCceEEEEEccCCCeEE-----EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc-e
Q 042146 21 GHLRAVSYVKFSHDGRLLT-----SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL-K 94 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~-----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~-~ 94 (262)
+|...+..++|||||++|| .|+.+..|++||++ +++.+ .
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-----------------------------------tg~~~~~ 162 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-----------------------------------SGEWSKV 162 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-----------------------------------TCCBCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-----------------------------------CCCCcCC
Confidence 4666799999999999998 44445666666554 44332 1
Q ss_pred -ecccCCcceEEEEEeCCCCEEEeecCCCe-------------EEEEECCCCe----eeeeeecCCCCeeeEEEccCCCE
Q 042146 95 -TLIGHTNYVFCINFNPQSNRIVSDTFNET-------------IRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 95 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
.+... ....++|+||++.|+.++.+.. |++|++.+++ .+.....+...+..+.|+|+|++
T Consensus 163 ~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 163 DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC
T ss_pred cccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE
Confidence 11111 1257899999999998887765 9999998775 33333445567899999999999
Q ss_pred EEEEeCCC----eEEEEeCCC------------------CCccEEEEEc---CCCeEEEEecCCCce--eeEEeccCCce
Q 042146 157 IVTSSYDG----LYRILDAST------------------PNGKFILVGT---LDNTLRLWNYSTRKI--LKTYSGYTNSK 209 (262)
Q Consensus 157 l~~~~~dg----~i~~~d~~~------------------~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~ 209 (262)
|+.++.++ .|.+++... +++.+++... .++.|.+||+.+++. ...+..+.
T Consensus 241 l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--- 317 (695)
T 2bkl_A 241 LFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--- 317 (695)
T ss_dssp EEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred EEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC---
Confidence 88887666 677776543 3444333333 246788888776542 12222110
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
....+..++|+ ++.++++.. .|+..+||.++
T Consensus 318 -----------------~~~~l~~~~~~-~~~lv~~~~--~dg~~~l~~~~ 348 (695)
T 2bkl_A 318 -----------------SSASLLSVSIV-GGHLSLEYL--KDATSEVRVAT 348 (695)
T ss_dssp -----------------SSCEEEEEEEE-TTEEEEEEE--ETTEEEEEEEE
T ss_pred -----------------CCCeEEEEEEE-CCEEEEEEE--ECCEEEEEEEe
Confidence 13457778888 667777777 78888888664
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=1.5e-15 Score=120.69 Aligned_cols=196 Identities=11% Similarity=-0.008 Sum_probs=113.2
Q ss_pred ccccceecccCcCc-----eEEEEEccCCCeEEEecCC-CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEE
Q 042146 12 PYTLTQTLNGHLRA-----VSYVKFSHDGRLLTSSSAE-KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLW 85 (262)
Q Consensus 12 ~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~ 85 (262)
....+..+..+... +.+++|+|||++|+..... +... |.+|
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~---------------------------------l~~~ 65 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRN---------------------------------YYLL 65 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCE---------------------------------EEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCce---------------------------------EEEE
Confidence 33445555554433 7788999999998876543 3211 2344
Q ss_pred ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeee------------------
Q 042146 86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTA------------------ 147 (262)
Q Consensus 86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~------------------ 147 (262)
|+.+++.......+......+.|+|++++|+.++.++.|++||+.+++.......+......
T Consensus 66 d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 145 (396)
T 3c5m_A 66 NLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEIL 145 (396)
T ss_dssp ETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred ECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccc
Confidence 55554433322222222333789999999999988899999999988765555444432222
Q ss_pred -EEEccCCCEEEEE-----eCCCeEEEEeCCC-------------------C-CccEEEEEcCC------CeEEEEecCC
Q 042146 148 -IDFNRDGTMIVTS-----SYDGLYRILDAST-------------------P-NGKFILVGTLD------NTLRLWNYST 195 (262)
Q Consensus 148 -~~~~~~~~~l~~~-----~~dg~i~~~d~~~-------------------~-~~~~l~~~~~d------g~i~i~d~~~ 195 (262)
+.|+|+++.++.+ ..+..|.+||+.. | ++..|+..+.+ ..|.+||+..
T Consensus 146 ~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 146 KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 2456666655443 3455677777654 3 44444443322 2355555543
Q ss_pred CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CC--CcEEEEeecc
Q 042146 196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD-ND--RTMKIWTQEK 261 (262)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d--~~i~iw~~~~ 261 (262)
++....... . ....+..++|+|+++.|+.++.+ .. +.|++|++..
T Consensus 226 ~~~~~l~~~-~--------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 226 SNVRKIKEH-A--------------------EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp CCCEESSCC-C--------------------TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred CceeEeecc-C--------------------CCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 332111110 0 12357789999999988777621 11 3499998753
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=6.5e-13 Score=101.47 Aligned_cols=184 Identities=8% Similarity=-0.014 Sum_probs=126.4
Q ss_pred CCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146 4 DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR 83 (262)
Q Consensus 4 d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~ 83 (262)
++.|..|.+..-...+..+...+.+++++|+|+++++...++.|.+||..+
T Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~----------------------------- 99 (296)
T 3e5z_A 49 QNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG----------------------------- 99 (296)
T ss_dssp GTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-----------------------------
T ss_pred CCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-----------------------------
Confidence 455666654333556666778899999999999888877778888886532
Q ss_pred EEecCCCccceec---c-cCCcceEEEEEeCCCCEEEe----ec-------------CCCeEEEEECCCCeeeeeeecCC
Q 042146 84 LWDVPTATSLKTL---I-GHTNYVFCINFNPQSNRIVS----DT-------------FNETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 84 v~d~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~~~~ 142 (262)
++..... . .....+..++++|+|+++++ |+ ..+.|..++.. ++. ..+..+.
T Consensus 100 ------g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 100 ------GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp ------CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred ------CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 1111110 0 11234667999999998887 33 13467777765 443 3444556
Q ss_pred CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKI 198 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~ 198 (262)
.....++|+|+++.+++.+.++.|.+|++.. ++++++++. ++.|.+||.. ++.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 6779999999999887777889999998641 455544444 6788889876 777
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE-cCCCCeEEEeeecCCC
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS-HPAKNIIASGALDNDR 252 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~d~d~ 252 (262)
+..+.. +.. +.+++| .|+++.|++++ .++
T Consensus 249 ~~~~~~----------------------~~~-~~~~~f~~~d~~~L~v~t--~~~ 278 (296)
T 3e5z_A 249 LGRVLT----------------------PQT-TSNLCFGGPEGRTLYMTV--STE 278 (296)
T ss_dssp EEEEEC----------------------SSC-CCEEEEESTTSCEEEEEE--TTE
T ss_pred EEEEEC----------------------CCC-ceeEEEECCCCCEEEEEc--CCe
Confidence 766664 445 888999 68999888887 553
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=5.4e-14 Score=109.24 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
..|.++.|++++..++..+.++.++.| .++....+..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI--------------------------------------TAEPWLEISKKGLQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE--------------------------------------ECEEEEEEESSCCCE
T ss_pred cccceeeecCCccceeEEeecccCccc--------------------------------------ccceeEEEeccCccc
Confidence 446777888887777666667766666 123333444555667
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC----CeEEEEeCCC------
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD----GLYRILDAST------ 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~------ 173 (262)
.+++|+|++++++++..++.|.+||..+++.......+...+.+++++|+++++++...+ +.|.+||...
T Consensus 48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence 899999999988888889999999998887655444566789999999999888777666 6899998654
Q ss_pred ----------------CCccEEEEEcC------CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 174 ----------------PNGKFILVGTL------DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 174 ----------------~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
++++++++... .+.|..+|..+++...... ....+
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------~~~~~ 184 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------------------NISVA 184 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------------------EESSE
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------------------CCCcc
Confidence 33333333322 1334444433332221111 33457
Q ss_pred EEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 232 ISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
..++|+|+++.|+.+.. .++.|.+|+++
T Consensus 185 ~~i~~~~dg~~l~v~~~-~~~~i~~~d~~ 212 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTET-TANRLHRIALE 212 (333)
T ss_dssp EEEEECTTSSEEEEEEG-GGTEEEEEEEC
T ss_pred cceEECCCCCEEEEEeC-CCCeEEEEEec
Confidence 88999999986654432 47899999984
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=5.7e-13 Score=101.80 Aligned_cols=184 Identities=11% Similarity=0.068 Sum_probs=127.8
Q ss_pred ccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146 14 TLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92 (262)
Q Consensus 14 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~ 92 (262)
..+..+..+.....+++|+|+++ +++++..++.|..|+.+. +
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----------------------------------~-- 60 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----------------------------------Q-- 60 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----------------------------------C--
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----------------------------------C--
Confidence 34455556677789999999998 788888888888886532 2
Q ss_pred ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC----CCCeeeEEEccCCCEEEEE----e---
Q 042146 93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH----SDPVTAIDFNRDGTMIVTS----S--- 161 (262)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~----~--- 161 (262)
...+..+...+.+++++|+++++++...++.|.+||..+++........ ...+..++++|+|+++++. +
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 3333345567899999999998888877889999999877754333221 2356789999999988873 2
Q ss_pred ----------CCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecC-CCce---eeEEeccCCce
Q 042146 162 ----------YDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYS-TRKI---LKTYSGYTNSK 209 (262)
Q Consensus 162 ----------~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~ 209 (262)
..+.|..++... ++++.+++.+.++.|++|++. +++. ...+..
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~----- 215 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV----- 215 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-----
T ss_pred cccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-----
Confidence 134666666532 678888777888999999986 4544 222211
Q ss_pred eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+...+..++++++|+++++. ++.|.+|+.+
T Consensus 216 -----------------~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~~ 245 (296)
T 3e5z_A 216 -----------------EPGKTDGLRVDAGGLIWASA----GDGVHVLTPD 245 (296)
T ss_dssp -----------------SSSCCCSEEEBTTSCEEEEE----TTEEEEECTT
T ss_pred -----------------CCCCCCeEEECCCCCEEEEc----CCeEEEECCC
Confidence 33445667888888765554 3567777754
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=1.9e-13 Score=116.84 Aligned_cols=181 Identities=14% Similarity=0.175 Sum_probs=114.0
Q ss_pred cCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
+|...+..++|||||++||.++.++ . ....|++||+.+++.......+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~-------------------------------~~~~i~v~d~~tg~~~~~~~~~ 170 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGS-------------------------------DWVTIKFMKVDGAKELPDVLER 170 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTC-------------------------------SCEEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCC-------------------------------ceEEEEEEECCCCCCCcccccC
Confidence 3545688999999999998775432 0 0002445555555544322211
Q ss_pred CcceEEEEEeCCCCEEEeecCCCe----------------EEEEECCCCee----eeeeecCCCCeeeEEEccCCCEEEE
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNET----------------IRIWDIKTGKC----LKVLPAHSDPVTAIDFNRDGTMIVT 159 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (262)
..+..++|+||++.|+.++.++. |++|++.+++. +.....|...+..+.|+|+|++|+.
T Consensus 171 -~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 171 -VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp -ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred -cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence 22567999999999988877765 99999987652 2222234556789999999998887
Q ss_pred EeC-----CCeEEEEeCCC--------------------------CCccEEEEEcC----CCeEEEEecCCCce--eeEE
Q 042146 160 SSY-----DGLYRILDAST--------------------------PNGKFILVGTL----DNTLRLWNYSTRKI--LKTY 202 (262)
Q Consensus 160 ~~~-----dg~i~~~d~~~--------------------------~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~ 202 (262)
++. +..|.+||+.. ++++.|+..+. .+.|.+||+.++.. ...+
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 329 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL 329 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence 764 56899999753 22333333322 12456666554421 1222
Q ss_pred eccCCceeEEEEEEecCCCeeEEcccc--ceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146 203 SGYTNSKYCISSTFSVTNGKYIVSHRD--PVISVASHPAKNIIASGALDNDRTMKIW 257 (262)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~d~d~~i~iw 257 (262)
. .+.. .+..++|++++.++++.. .|+..+||
T Consensus 330 ~----------------------~~~~~~~~~~~~~~~~~~lv~~~~--~~g~~~l~ 362 (710)
T 2xdw_A 330 V----------------------PEHEKDVLEWVACVRSNFLVLCYL--HDVKNTLQ 362 (710)
T ss_dssp E----------------------CCCSSCEEEEEEEETTTEEEEEEE--ETTEEEEE
T ss_pred c----------------------CCCCCCeEEEEEEEcCCEEEEEEE--ECCEEEEE
Confidence 2 2333 577888888888888887 67755444
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.57 E-value=1.7e-12 Score=97.70 Aligned_cols=177 Identities=10% Similarity=0.030 Sum_probs=121.4
Q ss_pred ceEEEEEccCCCeEE-EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 25 AVSYVKFSHDGRLLT-SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
...++++++++++++ +.+.++.|.+|+.... ........+...+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-----------------------------------~~~~~~~~~~~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-----------------------------------GTTVLPFNGLYQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------------------------------EECCCCSCCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc-----------------------------------ccceEeeCCcCCc
Confidence 678999999999777 5477888888864321 1000001122456
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------- 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------- 173 (262)
.+++++++++++++.. ++.|.+||................+..++++|+++++++...++.|.+|+...
T Consensus 70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~ 148 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG 148 (270)
T ss_dssp CCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS
T ss_pred ceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc
Confidence 7899999999777666 88999999876543322222335689999999999777777888999998544
Q ss_pred ----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE
Q 042146 174 ----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII 243 (262)
Q Consensus 174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 243 (262)
++++++++...++.|.+||............ +...+..++++|++.++
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~----------------------~~~~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT----------------------DITAPWGIAVDEAGTVY 206 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS----------------------SCCSEEEEEECTTCCEE
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc----------------------CCCCceEEEECCCCCEE
Confidence 5667666666678888888776543322111 22567889999999777
Q ss_pred EEeeecCCCcEEEEeecc
Q 042146 244 ASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 244 ~~~~~d~d~~i~iw~~~~ 261 (262)
++.. .++.|.+|+.+.
T Consensus 207 v~~~--~~~~v~~~~~~~ 222 (270)
T 1rwi_B 207 VTEH--NTNQVVKLLAGS 222 (270)
T ss_dssp EEET--TTSCEEEECTTC
T ss_pred EEEC--CCCcEEEEcCCC
Confidence 7766 678899998753
No 184
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.55 E-value=7.7e-13 Score=104.17 Aligned_cols=138 Identities=12% Similarity=0.160 Sum_probs=100.3
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECC-CCeeeeeeecC-CCCeeeEEEccCCCE--EEEEe-------------CC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIK-TGKCLKVLPAH-SDPVTAIDFNRDGTM--IVTSS-------------YD 163 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d 163 (262)
..+..++|+|++++|++++.+ .|.+|++. +++........ .+....++|+|+|+. ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 457789999999999988877 99999997 77665433211 134677999999994 44553 68
Q ss_pred CeEEEEeCCC-------------------------CCccEEEEEc-CCCeEEEEecC-CCceee--EEeccCCceeEEEE
Q 042146 164 GLYRILDAST-------------------------PNGKFILVGT-LDNTLRLWNYS-TRKILK--TYSGYTNSKYCISS 214 (262)
Q Consensus 164 g~i~~~d~~~-------------------------~~~~~l~~~~-~dg~i~i~d~~-~~~~~~--~~~~~~~~~~~~~~ 214 (262)
+.+.+|++.. |+++++++++ .++.|++||+. +++... .+...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--------- 189 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP--------- 189 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS---------
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC---------
Confidence 9999998742 6788777665 46789999998 666432 22110
Q ss_pred EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+...+..++|+|++++|++++. .++.|.+|+++
T Consensus 190 -----------~~g~~p~~~~~spdg~~l~v~~~-~~~~v~v~~~~ 223 (365)
T 1jof_A 190 -----------DPGDHPRWVAMHPTGNYLYALME-AGNRICEYVID 223 (365)
T ss_dssp -----------STTCCEEEEEECTTSSEEEEEET-TTTEEEEEEEC
T ss_pred -----------CCCCCCCEeEECCCCCEEEEEEC-CCCeEEEEEEe
Confidence 03456889999999999988773 36899999875
No 185
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=6e-13 Score=104.41 Aligned_cols=176 Identities=12% Similarity=0.143 Sum_probs=123.5
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
+++.+++++...++++|+.++ +++|+++.......... ..-+..... .+.. |+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~------------------------~~~~~~~~~-~lp~-V~ 91 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS------------------------TPLTFKWEK-EIPD-VI 91 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS------------------------CCCCCSEEE-ECTT-EE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc------------------------ccccceEEe-eCCC-ee
Confidence 699999999999999999874 55587654221000000 000111112 2445 99
Q ss_pred EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------- 173 (262)
.++| ++++|+++ .++.|++||+++.........|..++.++.+.+. .++++..||.|.+||+..
T Consensus 92 ~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~Vs 166 (388)
T 1xip_A 92 FVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVT 166 (388)
T ss_dssp EEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEE
T ss_pred EEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccCCce
Confidence 9999 89999998 7899999999877666666677888888877654 388999999999999984
Q ss_pred -----CCccEEEEEcCCCeEEEEecCCCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146 174 -----PNGKFILVGTLDNTLRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 174 -----~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 246 (262)
|+| ++.|..||.+++|+...++. ..++...... .+ -.+|...|.++.|.+++.++++-
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~----------~~---~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL----------EE---LPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH----------HT---SCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccc----------cc---ccCCCeeEEEEEEecCCeEEEEE
Confidence 666 67899999999999887665 5555321000 00 00156789999999999888774
Q ss_pred e
Q 042146 247 A 247 (262)
Q Consensus 247 ~ 247 (262)
+
T Consensus 232 ~ 232 (388)
T 1xip_A 232 G 232 (388)
T ss_dssp E
T ss_pred c
Confidence 4
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=3.2e-11 Score=93.54 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=132.4
Q ss_pred CCCceeeeccc--ccceecc------cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146 3 SDRSLESFRPY--TLTQTLN------GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74 (262)
Q Consensus 3 ~d~~i~~~~~~--~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
.+++|..+++- +....+. ........+.+. +++.+++...++.|.+|
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~vi------------------------ 69 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAI------------------------ 69 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEE------------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEE------------------------
Confidence 36778888653 3333221 122346677774 45555666666777666
Q ss_pred ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-----CCeeeEE
Q 042146 75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-----DPVTAID 149 (262)
Q Consensus 75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~ 149 (262)
|..+++.+.++. .......++++++++++++...++.|.+||+.+++....+.... .....++
T Consensus 70 -----------D~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~ 137 (328)
T 3dsm_A 70 -----------DINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV 137 (328)
T ss_dssp -----------ETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE
T ss_pred -----------ECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE
Confidence 445566655553 34567889998888555555478999999999998877765433 1456777
Q ss_pred EccCCCEEEEEe--CCCeEEEEeCCC-------------------CCccEEEEEcCC----------CeEEEEecCCCce
Q 042146 150 FNRDGTMIVTSS--YDGLYRILDAST-------------------PNGKFILVGTLD----------NTLRLWNYSTRKI 198 (262)
Q Consensus 150 ~~~~~~~l~~~~--~dg~i~~~d~~~-------------------~~~~~l~~~~~d----------g~i~i~d~~~~~~ 198 (262)
+ . +..++++. .++.|.++|..+ +++++++++..+ +.|.++|..+++.
T Consensus 138 ~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v 215 (328)
T 3dsm_A 138 Q-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV 215 (328)
T ss_dssp E-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred E-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence 7 4 44455554 489999999876 677877776654 7899999998887
Q ss_pred eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
...+... .......++++|+++.|+++. . .|.+||...
T Consensus 216 ~~~~~~~---------------------~g~~p~~la~~~d~~~lyv~~--~--~v~~~d~~t 253 (328)
T 3dsm_A 216 EKQFKFK---------------------LGDWPSEVQLNGTRDTLYWIN--N--DIWRMPVEA 253 (328)
T ss_dssp EEEEECC---------------------TTCCCEEEEECTTSCEEEEES--S--SEEEEETTC
T ss_pred EEEEecC---------------------CCCCceeEEEecCCCEEEEEc--c--EEEEEECCC
Confidence 7766531 123678999999999988875 4 788888753
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=6e-11 Score=98.23 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=139.1
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
.++++..++ +.+.+.++.. ...+..+.|+|||+++++++.|+.|.+||+..
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~-------------------------- 227 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM-------------------------- 227 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------------------------
T ss_pred CCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCC--------------------------
Confidence 356777776 3556666653 33567899999999999999999888886531
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEe----CCCCEEEeecC-CCeEEEEECCCCeeeeeeecC-----------CCC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFN----PQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAH-----------SDP 144 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~ 144 (262)
.+.+.+.++... .....++|+ |+|++++++.. ++.|.++|..+.+.+..+... ...
T Consensus 228 -------~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 228 -------KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp -------SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred -------CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence 133444444432 335689999 69998877664 589999999999888776421 125
Q ss_pred eeeEEEccCCCE-EEEEeCCCeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecCCCceeeE
Q 042146 145 VTAIDFNRDGTM-IVTSSYDGLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYSTRKILKT 201 (262)
Q Consensus 145 v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 201 (262)
+..+..++++.. ++....+|.|.++|... +++++++++. .++.|.++|+.+++.+..
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 778888887664 44445678999998653 6788776655 678999999999998877
Q ss_pred Eec-cCCceeEEEEEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146 202 YSG-YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 202 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+.. .... |.+.-..+ ++|+ +..++++.. .++.|.+++...
T Consensus 380 i~vgg~~P------------------hpg~g~~~-~~p~~g~v~~t~~~-g~~~Vsvid~~~ 421 (567)
T 1qks_A 380 EDTGGQTP------------------HPGRGANF-VHPTFGPVWATSHM-GDDSVALIGTDP 421 (567)
T ss_dssp EECSSSSB------------------CCTTCEEE-EETTTEEEEEEEBS-SSSEEEEEECCT
T ss_pred EeccCcCC------------------CCccceee-ECCCCCcEEEeCCC-CCCeEEEecCCC
Confidence 754 2211 43322222 5787 444445432 357888887653
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=7.2e-12 Score=97.16 Aligned_cols=195 Identities=8% Similarity=0.017 Sum_probs=127.6
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
+++|..++ +.+.+.++. .......++++++++.+++...++.|.+||..+
T Consensus 63 ~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t--------------------------- 114 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT--------------------------- 114 (328)
T ss_dssp GTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT---------------------------
T ss_pred CCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC---------------------------
Confidence 45666665 355666664 346688999999986555554788888886543
Q ss_pred EEEEecCCCccceecccC-----CcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146 82 IRLWDVPTATSLKTLIGH-----TNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT 155 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (262)
++....+... ......+++ .++.++++.. .++.|.++|+++++.+..+... .....++++|+|+
T Consensus 115 --------~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~ 184 (328)
T 3dsm_A 115 --------YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNK 184 (328)
T ss_dssp --------TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSE
T ss_pred --------CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCC
Confidence 2222222111 113445666 3444444443 4889999999999988877653 3457899999999
Q ss_pred EEEEEeCC----------CeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 156 MIVTSSYD----------GLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 156 ~l~~~~~d----------g~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
+++++..+ +.|.++|..+ +++++|+++.. .|.+||..+++.......
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence 77777654 7899999765 55677766654 788888887765321100
Q ss_pred cCCceeEEEEEEecCCCeeEEccccceEEEEEcC-CCCeEEEe----eecCCCcEEEEeec
Q 042146 205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP-AKNIIASG----ALDNDRTMKIWTQE 260 (262)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~----~~d~d~~i~iw~~~ 260 (262)
. ........++++| ++.++++. . .++.|.+|+.+
T Consensus 263 ~--------------------~~~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d~~ 301 (328)
T 3dsm_A 263 E--------------------FRDTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYSPQ 301 (328)
T ss_dssp C--------------------CCSSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEECTT
T ss_pred c--------------------CCCCceEEEEEcCCCCeEEEEcccccc--cCCEEEEECCC
Confidence 0 0235678999999 45555555 4 57899999875
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.50 E-value=5.6e-12 Score=107.79 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=122.9
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc----eecccCCc
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL----KTLIGHTN 101 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~----~~~~~~~~ 101 (262)
+..++|+|||+.|+.++.++.- . . .. +..........|++|++.+++.. .....+..
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~------~----~-~~--------~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~ 233 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQD------G----K-SD--------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK 233 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCS------S----C-CS--------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred cceEEEEeCCCEEEEEEECCcc------c----c-cc--------ccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence 6779999999999988876530 0 0 00 00000011125788888776532 22233455
Q ss_pred ceEEEEEeCCCCEEEeecC-----CCeEEEEECCC------Ce-eeeeeecCCCCeeeEEEccCCCEEEEEeCC----Ce
Q 042146 102 YVFCINFNPQSNRIVSDTF-----NETIRIWDIKT------GK-CLKVLPAHSDPVTAIDFNRDGTMIVTSSYD----GL 165 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~ 165 (262)
.+..+.|+|+|++|+..+. +..|.+||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 6789999999999887654 56899999986 43 35556666665554 588999887776643 36
Q ss_pred EEEEeCCC------------------------CCccEEEEEcCCC--eEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146 166 YRILDAST------------------------PNGKFILVGTLDN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 166 i~~~d~~~------------------------~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
|.+||+.. +++.++++...++ .|++|++.+++.+..+..
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--------------- 377 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL--------------- 377 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC---------------
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC---------------
Confidence 99998764 2344555555555 344556555655555543
Q ss_pred CCeeEEccccceEEEEEcCCCCeEEEe--eecCCCcEEEEeecc
Q 042146 220 NGKYIVSHRDPVISVASHPAKNIIASG--ALDNDRTMKIWTQEK 261 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~--~~d~d~~i~iw~~~~ 261 (262)
+.+.+..++++|+++.++.. +....+.|.+||+..
T Consensus 378 -------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 378 -------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp -------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred -------CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 55678889999998766533 222457888998753
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=1.4e-10 Score=88.27 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=136.2
Q ss_pred cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC---CCCCCccc-cCCcccccc----ceeEEEEecCCC
Q 042146 19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST---PPSPLQKF-TGHEQGISD----LATIRLWDVPTA 90 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~-~~~~~~v~~----~~~i~v~d~~~~ 90 (262)
+..+...+.++++.++|+++++...++.|.+||.. ....... .......+ ......+.. ...|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34456789999999999988877778999999876 2211100 00111111 111111111 1257778765 3
Q ss_pred cc-ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 91 TS-LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 91 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
+. ...+......+..++++|+++++++...++.|.+||. +++.... ...+...+..+++.++++++++...++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 32 1122224457899999999998888877889999998 5544322 2234457899999999988777777788888
Q ss_pred EeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146 169 LDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR 228 (262)
Q Consensus 169 ~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (262)
||... +++.++++...++.|.+||. +++... +... .+.
T Consensus 167 ~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~--------------------~~~ 224 (299)
T 2z2n_A 167 ITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP--------------------TPN 224 (299)
T ss_dssp ECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS--------------------STT
T ss_pred EcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC--------------------CCC
Confidence 88632 45555555555677777777 554322 2110 034
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
..+.+++++|++.++++.. .++.|..|+.
T Consensus 225 ~~~~~i~~~~~g~l~v~~~--~~~~i~~~d~ 253 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEW--GANKIGRLTS 253 (299)
T ss_dssp CCEEEEEECSTTCEEEEET--TTTEEEEEET
T ss_pred CCceeEEECCCCCEEEecc--CCceEEEECC
Confidence 5678899999988777765 5678888875
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=1.5e-11 Score=94.48 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=135.6
Q ss_pred cCcCceEEEEEccCCCeEEE-------ecCCCeEEEeecCCCCCCCCCC------CCCCccc-cCCc-cc--ccc-ceeE
Q 042146 21 GHLRAVSYVKFSHDGRLLTS-------SSAEKTLLTYSLSSISNFDSTP------PSPLQKF-TGHE-QG--ISD-LATI 82 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s-------~~~d~~i~iw~~~~~~~~~~~~------~~~~~~~-~~~~-~~--v~~-~~~i 82 (262)
..-....+++|+++++++++ +..++.|.+||........... ......+ .... .. +.. ...|
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l 94 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence 33445689999999988877 6778999999875533211100 0001111 1111 11 111 1268
Q ss_pred EEEecCCCcccee-ccc----CCcceEEEEEeCCCCEEEeecCC---------------CeEEEEECCCCeeeeeeecCC
Q 042146 83 RLWDVPTATSLKT-LIG----HTNYVFCINFNPQSNRIVSDTFN---------------ETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 83 ~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~ 142 (262)
.+||.. ++.... ... ....+.+++++|+++++++...+ +.|..||.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 888887 554322 211 12458899999999988777654 578888866 5543332 234
Q ss_pred CCeeeEEEc----cCCCEEEEE-eCCCeEEEEeCC-C--------------------------CCccEEEEEcCCCeEEE
Q 042146 143 DPVTAIDFN----RDGTMIVTS-SYDGLYRILDAS-T--------------------------PNGKFILVGTLDNTLRL 190 (262)
Q Consensus 143 ~~v~~~~~~----~~~~~l~~~-~~dg~i~~~d~~-~--------------------------~~~~~l~~~~~dg~i~i 190 (262)
.....++++ |+++.++.+ ..++.|.+||.. . ++++++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 456889999 998765555 567889999853 1 34555666556778888
Q ss_pred EecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 191 WNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 191 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
||..+++.+..+.. +...+.+++|+|+++.|+.++. .++.|..|+++
T Consensus 252 ~d~~~g~~~~~~~~----------------------~~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~ 298 (314)
T 1pjx_A 252 FGPDGGQPKMRIRC----------------------PFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCBSCSEEEEC----------------------SSSCEEEEEECTTSSEEEEEET-TTTEEEEEECS
T ss_pred EcCCCCcEeEEEeC----------------------CCCCceeEEECCCCCEEEEEeC-CCCeEEEEeCC
Confidence 88876766655543 4467899999999995554442 56889998875
No 192
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=2.8e-11 Score=91.83 Aligned_cols=155 Identities=15% Similarity=0.256 Sum_probs=112.7
Q ss_pred eEEEEecCCCccceecc------cCCcceEEEEEe-CCCCEEEeecC-CCeEEEEECCCCeeeeeeec-CCCCeeeEEEc
Q 042146 81 TIRLWDVPTATSLKTLI------GHTNYVFCINFN-PQSNRIVSDTF-NETIRIWDIKTGKCLKVLPA-HSDPVTAIDFN 151 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~ 151 (262)
.|.+||.. ++.+..+. .+...+..+++. ++++++++... ++.|.+|| .+++.+..+.. +...+.+++++
T Consensus 52 ~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~ 129 (286)
T 1q7f_A 52 RIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVD 129 (286)
T ss_dssp EEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC
T ss_pred EEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEe
Confidence 58888876 55544442 234578899995 67776666643 78999999 56766666643 34568999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 152 RDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
|+++++++...++.|.+||... ++++++++...++.|++||.. ++.+..+....
T Consensus 130 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g---- 204 (286)
T 1q7f_A 130 NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG---- 204 (286)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT----
T ss_pred CCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC----
Confidence 9999888877889999998543 567777777778899999974 55555554311
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC-cEEEEeec
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR-TMKIWTQE 260 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~-~i~iw~~~ 260 (262)
+...+..++++|++.++++.. .++ .|.+|+.+
T Consensus 205 ----------------~~~~p~~i~~d~~G~l~v~~~--~~~~~i~~~~~~ 237 (286)
T 1q7f_A 205 ----------------ITNYPIGVGINSNGEILIADN--HNNFNLTIFTQD 237 (286)
T ss_dssp ----------------TSCSEEEEEECTTCCEEEEEC--SSSCEEEEECTT
T ss_pred ----------------ccCCCcEEEECCCCCEEEEeC--CCCEEEEEECCC
Confidence 235678999999998888876 565 89999864
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.45 E-value=4.8e-11 Score=92.54 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=114.7
Q ss_pred Cceeeecc--cccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146 5 RSLESFRP--YTLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81 (262)
Q Consensus 5 ~~i~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (262)
++|..+++ .++...+. ++......++++|+|+++++...++.|++|+.+.... .+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~-------~~~~~------------ 129 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG-------PLLIL------------ 129 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC-------CSEEE------------
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE-------EEEEe------------
Confidence 45666654 44444443 4456789999999999999988899999997643100 00000
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeec-CCCeEEEEECCCCeeeeeeecCC----------CCeeeEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDT-FNETIRIWDIKTGKCLKVLPAHS----------DPVTAID 149 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~----------~~v~~~~ 149 (262)
. .......-..+......++++| ++.++++.+ .++.|++|| .+++.+..+.... .....++
T Consensus 130 ----~--~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia 202 (329)
T 3fvz_A 130 ----G--RSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202 (329)
T ss_dssp ----S--BTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred ----c--ccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence 0 0000000023445688999999 788888886 689999999 5677666664222 2378999
Q ss_pred EccC-CCEEEEEeCCCeEEEEeCCC----------------------C------CccEEEEEcCCCeEEEEecCCCceee
Q 042146 150 FNRD-GTMIVTSSYDGLYRILDAST----------------------P------NGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 150 ~~~~-~~~l~~~~~dg~i~~~d~~~----------------------~------~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
++|+ +.++++...++.|++||..+ | +++.+++...+..|++||..+++.+.
T Consensus 203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 203 LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 9998 77777778899999999872 1 11111222234589999999999988
Q ss_pred EEe
Q 042146 201 TYS 203 (262)
Q Consensus 201 ~~~ 203 (262)
.+.
T Consensus 283 ~~~ 285 (329)
T 3fvz_A 283 VFK 285 (329)
T ss_dssp EEC
T ss_pred EEc
Confidence 874
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=1.6e-11 Score=95.67 Aligned_cols=185 Identities=11% Similarity=0.105 Sum_probs=108.6
Q ss_pred eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc--c--ccceeEEEEecCCCccceecccCCc
Q 042146 26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG--I--SDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--v--~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
+..++|+|+|+.|+.++.+.. . .........+.....+ . .....|.+||+.+++.+..+.. .
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~-------~-----~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~- 171 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRR-------E-----DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P- 171 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCC-------C--------------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-
T ss_pred ccceeECCCCCEEEEEEccCC-------C-----cCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-
Confidence 899999999999988875320 0 0000000000000000 0 1123688999988776344443 3
Q ss_pred ceEEEEEeCCCCEEEeecCCC-------eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC--------CeE
Q 042146 102 YVFCINFNPQSNRIVSDTFNE-------TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD--------GLY 166 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i 166 (262)
.+..+.|+|++ +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|+.|+.++.+ ..|
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 78899999999 777775442 334443335543 334334 445444 9999988877744 468
Q ss_pred EEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 167 RILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 167 ~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
.+|| .. .++ ++++++.++.++|| +.+++....+. +
T Consensus 247 ~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~~~~~-----------------------~ 300 (347)
T 2gop_A 247 YIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIKPIAK-----------------------G 300 (347)
T ss_dssp EEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEEEEEC-----------------------S
T ss_pred EEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceEEEec-----------------------C
Confidence 8887 22 122 55666667777777 65444322221 5
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcE-EEEee
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTM-KIWTQ 259 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i-~iw~~ 259 (262)
...|.+++|+| .++++++ .++.. .||.+
T Consensus 301 ~~~v~~~~~s~--~~~~~~~--~~~~~~~l~~~ 329 (347)
T 2gop_A 301 RHWIMGFDVDE--IVVYLKE--TATRLRELFTW 329 (347)
T ss_dssp SSEEEEEEESS--SEEEEEE--CSSSCCEEEEE
T ss_pred CCeEEeeeeeC--cEEEEEc--CCCChHHheEe
Confidence 66789999999 6677766 55554 77765
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.4e-12 Score=101.05 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=97.9
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-----------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-----------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
.++.+++++...++++|+.+ .+.+|++...+ +.... .+.+ |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999987 45669875433 11223 3556 999999 89999999 889999999
Q ss_pred CCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146 171 AST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI 232 (262)
Q Consensus 171 ~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (262)
+++ +..+.+++++.||.|.+||+.++.... +...|+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~--------------------------~~~~Vs 166 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ--------------------------LAQNVT 166 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--------------------------EEESEE
T ss_pred chhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--------------------------ccCCce
Confidence 876 122238888999999999999877643 334799
Q ss_pred EEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 233 SVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
+++|||+| ++.|. .||++++|+.+.
T Consensus 167 ~v~WSpkG--~~vg~--~dg~i~~~~~~~ 191 (388)
T 1xip_A 167 SFDVTNSQ--LAVLL--KDRSFQSFAWRN 191 (388)
T ss_dssp EEEECSSE--EEEEE--TTSCEEEEEEET
T ss_pred EEEEcCCc--eEEEE--cCCcEEEEcCCC
Confidence 99999999 66777 899999998753
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=1.4e-09 Score=82.74 Aligned_cols=212 Identities=13% Similarity=0.065 Sum_probs=132.4
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC-CCCC-CCCCCcccc-CCcccccc----ceeEEEEecCCCccce
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-FDST-PPSPLQKFT-GHEQGISD----LATIRLWDVPTATSLK 94 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~-~~~~~~~~~-~~~~~v~~----~~~i~v~d~~~~~~~~ 94 (262)
+...+.++++.+++.++++...++.|..|+.+.... .... .......+. .....+.. ...|.+||. +++...
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~ 133 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE 133 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence 456789999999999888877789999998753110 0000 000111111 11111111 126778887 443322
Q ss_pred -ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 95 -TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 95 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
........+..+++++++++.++...++.|..||. +++.... .......+..++++++++++++...++.|..||..
T Consensus 134 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 212 (299)
T 2z2n_A 134 YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS 212 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC
Confidence 22334467899999999988888777889999998 6655432 23344568899999999877776678889988873
Q ss_pred C--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146 173 T--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI 232 (262)
Q Consensus 173 ~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (262)
. ++++.+++...++.|..||. +++ +..+.... +...+.
T Consensus 213 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~--------------------~~~~~~ 270 (299)
T 2z2n_A 213 GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQI--------------------KSAEPH 270 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSS--------------------SSCCEE
T ss_pred CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCC--------------------CCCccc
Confidence 2 45555555546677888877 343 22222100 345688
Q ss_pred EEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 233 SVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
++++ +++.++++.+ .+.|..++.++
T Consensus 271 ~i~~-~~g~l~v~~~---~~~l~~~~~~~ 295 (299)
T 2z2n_A 271 GICF-DGETIWFAME---CDKIGKLTLIK 295 (299)
T ss_dssp EEEE-CSSCEEEEET---TTEEEEEEEC-
T ss_pred eEEe-cCCCEEEEec---CCcEEEEEcCc
Confidence 9999 8888777664 35666666653
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=2.2e-10 Score=90.32 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=59.3
Q ss_pred ceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146 6 SLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73 (262)
Q Consensus 6 ~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 73 (262)
++..++ ..+++.++..-..+ .++++||+++++++. .++.|.+||...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t------------------- 106 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT------------------- 106 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-------------------
Confidence 445554 56666666654444 899999999998875 256677776543
Q ss_pred cccccceeEEEEecCCCccceeccc-------CCcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeee
Q 042146 74 QGISDLATIRLWDVPTATSLKTLIG-------HTNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKV 137 (262)
Q Consensus 74 ~~v~~~~~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~ 137 (262)
.+.+..+.- +......++++|+|++|+++.. ++.|.++| .+++.+..
T Consensus 107 ----------------~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 107 ----------------FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred ----------------CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 222222110 0122346788888888877653 46788888 88777666
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=1.1e-10 Score=89.17 Aligned_cols=168 Identities=14% Similarity=0.043 Sum_probs=108.3
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE-EEecCCCccceecccCC
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR-LWDVPTATSLKTLIGHT 100 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~-v~d~~~~~~~~~~~~~~ 100 (262)
+...+.+++++|+++++++. ++.|.+||.++.. +. +...... ...
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~-------------------------~~~~~~~~~~-------~~~ 97 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS-------------------------AVVLATVDND-------KKN 97 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE-------------------------EEEEEECCTT-------CSS
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc-------------------------EEEEEecCCC-------CCC
Confidence 45678999999999855543 4567777553210 00 0111000 112
Q ss_pred cceEEEEEeCCCCEEEeecC-----------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTF-----------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRI 168 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~ 168 (262)
..++.++++|+|+++++... .+.|..++.. ++... +..+......++|+|+++.|+ +.+.++.|..
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~ 175 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDA 175 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEE
Confidence 45789999999997765422 2345555543 33322 223334568899999998665 4556788999
Q ss_pred EeCC--C-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCC
Q 042146 169 LDAS--T-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG 221 (262)
Q Consensus 169 ~d~~--~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
|++. . +++++.++....+.|..||..+++.+..+..
T Consensus 176 ~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~----------------- 238 (297)
T 3g4e_A 176 FDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL----------------- 238 (297)
T ss_dssp EEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-----------------
T ss_pred EeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-----------------
Confidence 9863 1 4666666666677899999988888888765
Q ss_pred eeEEccccceEEEEEc-CCCCeEEEee
Q 042146 222 KYIVSHRDPVISVASH-PAKNIIASGA 247 (262)
Q Consensus 222 ~~~~~~~~~v~~~~~~-p~~~~l~~~~ 247 (262)
+...+++++|. |+++.|+.++
T Consensus 239 -----p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 -----PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -----SSSBEEEEEEESGGGCEEEEEE
T ss_pred -----CCCCceEEEEeCCCCCEEEEEc
Confidence 55678999998 8877665544
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=3e-10 Score=90.65 Aligned_cols=227 Identities=9% Similarity=0.064 Sum_probs=135.0
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCccccCCccccc--cc-e--eEEEEecCCCccceec
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQKFTGHEQGIS--DL-A--TIRLWDVPTATSLKTL 96 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~--~~-~--~i~v~d~~~~~~~~~~ 96 (262)
.....++|+++++++++...++.|++||.+........ ...+...+......+. .. . .|.+++...+.....+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 46789999999998888888899999998753221110 0000011111111111 11 1 5777777655433333
Q ss_pred ----ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee----eecCCCCe--eeEEEccC-CCEEEEEeCCCe
Q 042146 97 ----IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV----LPAHSDPV--TAIDFNRD-GTMIVTSSYDGL 165 (262)
Q Consensus 97 ----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~~l~~~~~dg~ 165 (262)
......+.+++++|++..|+.+..++.|+.||+.++..... ..++...- ..++|+|+ +.++++-..++.
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~ 290 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS 290 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence 21445678899999555555577788999999987653322 22222222 39999995 566666667889
Q ss_pred EEEEeCCC---------------------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEeccCCceeE
Q 042146 166 YRILDAST---------------------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYTNSKYC 211 (262)
Q Consensus 166 i~~~d~~~---------------------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 211 (262)
|+.|+... ++++++++-. .++.|+.|++.+++. .++.+.....
T Consensus 291 I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~-- 367 (409)
T 3hrp_A 291 VYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVA-- 367 (409)
T ss_dssp EEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCB--
T ss_pred EEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCC--
Confidence 99998542 4566666666 677888888766653 3333221000
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
...++......-.....++++|++.++++-. .++.|+.++++
T Consensus 368 -----g~~~g~~~~~~~~~P~giavd~~g~lyVad~--~n~~Ir~i~~e 409 (409)
T 3hrp_A 368 -----SQIDGTPLEATFNYPYDICYDGEGGYWIAEA--WGKAIRKYAVE 409 (409)
T ss_dssp -----SCCCBSTTTCCBSSEEEEEECSSSEEEEEES--TTCEEEEEEEC
T ss_pred -----CcCCCChhceEeCCceEEEEcCCCCEEEEEC--CCCeEEEEEeC
Confidence 0000000000124688999999988777776 78888887763
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.3e-11 Score=106.04 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=108.7
Q ss_pred CcCceEEEEEccCCCeEEEecCC-CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAE-KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
|...+..++|||||++||.++.+ |. ....|++||+.+++.+... .+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~-------------------------------e~~~i~v~dl~tg~~~~~~-~~~ 208 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGS-------------------------------DWRTVKFVGVADGKPLADE-LKW 208 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTC-------------------------------SEEEEEEEETTTCCEEEEE-EEE
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCC-------------------------------ceEEEEEEECCCCCCCCcc-CCC
Confidence 44478899999999999887643 21 0002445566666554321 111
Q ss_pred cceEEEEEeCCCCEEEeecCCCe--------------EEEEECCCCe----eeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNET--------------IRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~--------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
..+..++|+|| +.|+.++.++. |++|++.+++ .+.....+...+..+.|+|||++|+..+.
T Consensus 209 ~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 209 VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence 22357889999 88887766543 8999987665 22222223345889999999998888775
Q ss_pred CC-----eEEEEeCCC---------------------CCccEEEEEcC----CCeEEEEecCCCc-eeeEEeccCCceeE
Q 042146 163 DG-----LYRILDAST---------------------PNGKFILVGTL----DNTLRLWNYSTRK-ILKTYSGYTNSKYC 211 (262)
Q Consensus 163 dg-----~i~~~d~~~---------------------~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~~ 211 (262)
++ .|.+||+.. ++++.|+..+. ++.|.+||+.++. ....+..
T Consensus 288 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~------- 360 (741)
T 1yr2_A 288 EGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP------- 360 (741)
T ss_dssp CTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------
T ss_pred ccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------
Confidence 44 899998743 23444444433 2346666665531 1122211
Q ss_pred EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+...+..++|+ ++.++++.. .|+..+||.++
T Consensus 361 --------------~~~~~l~~~~~~-~~~lv~~~~--~dg~~~l~~~~ 392 (741)
T 1yr2_A 361 --------------ESKDNLESVGIA-GNRLFASYI--HDAKSQVLAFD 392 (741)
T ss_dssp --------------CCSSEEEEEEEE-BTEEEEEEE--ETTEEEEEEEE
T ss_pred --------------CCCCeEEEEEEE-CCEEEEEEE--ECCEEEEEEEe
Confidence 133445566776 555666666 67777777653
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.41 E-value=9.5e-12 Score=106.08 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=113.4
Q ss_pred EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc----cceecccCCcc
Q 042146 27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT----SLKTLIGHTNY 102 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~----~~~~~~~~~~~ 102 (262)
..++|+|||+.|+.++.|.. . .... ........|++|++.+++ .+.....+...
T Consensus 171 ~~~~wspDg~~l~~~~~d~~------~--------~~~~--------~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~ 228 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTD------P--------SIKV--------DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT 228 (695)
T ss_dssp CCCEECTTSSEEEEEECCCC------T--------TSCG--------GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred cceEEecCCCEEEEEEecCC------C--------CCcc--------ccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence 68999999999999887653 0 0000 000111246777776665 22333445567
Q ss_pred eEEEEEeCCCCEEEeecCCC----eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe---CCCeEEEEeCCCC-
Q 042146 103 VFCINFNPQSNRIVSDTFNE----TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS---YDGLYRILDASTP- 174 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~- 174 (262)
+..+.|+|+|++|+.++.++ .|.+|+..+++. ..+..+...+....+ +++.+++.+. .++.|.+||+..+
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 88999999999998877665 678887655543 344445555666666 6666444433 2578999998542
Q ss_pred ----------------------CccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146 175 ----------------------NGKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231 (262)
Q Consensus 175 ----------------------~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (262)
++.++++...|+..+||.+. .++....+..+ ....+
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---------------------~~~~v 365 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP---------------------GVGAA 365 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCS---------------------SSSEE
T ss_pred ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCC---------------------CCeEE
Confidence 23344444555555554332 23333333220 24567
Q ss_pred EEEEEcCCCCeEEEee--ecCCCcEEEEeecc
Q 042146 232 ISVASHPAKNIIASGA--LDNDRTMKIWTQEK 261 (262)
Q Consensus 232 ~~~~~~p~~~~l~~~~--~d~d~~i~iw~~~~ 261 (262)
..++++|+++.++... ....+.|++|++..
T Consensus 366 ~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 366 SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp CCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred EEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 7788999987766332 11357789998753
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.40 E-value=1.7e-10 Score=95.56 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=104.1
Q ss_pred EEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC--CCeeeeeeecCCCCeeeEEEc----cCCCEE
Q 042146 84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK--TGKCLKVLPAHSDPVTAIDFN----RDGTMI 157 (262)
Q Consensus 84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l 157 (262)
++|..+++.+.++.. ...+..+.++|+++++++++.++.|.+||+. +++.+..+.... ....++|+ |+|+++
T Consensus 181 viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l 258 (567)
T 1qks_A 181 LIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYA 258 (567)
T ss_dssp EEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEE
T ss_pred EEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEE
Confidence 335556666666543 3356689999999999999999999999995 788888776533 45789999 699988
Q ss_pred EEEe-CCCeEEEEeCCCC-------------C-------------------ccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 158 VTSS-YDGLYRILDASTP-------------N-------------------GKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 158 ~~~~-~dg~i~~~d~~~~-------------~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
+++. .++.+.++|..+. + ..+++.....|.|.++|....+.+....-
T Consensus 259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 7766 4588999986550 0 11223333445555665554322111100
Q ss_pred cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
........+.|+|++++++++.. .++.|.++|..+
T Consensus 339 ---------------------~~~~~~~d~~~~pdgr~~~va~~-~sn~V~ViD~~t 373 (567)
T 1qks_A 339 ---------------------SAERFLHDGGLDGSHRYFITAAN-ARNKLVVIDTKE 373 (567)
T ss_dssp ---------------------ECCSSEEEEEECTTSCEEEEEEG-GGTEEEEEETTT
T ss_pred ---------------------eccccccCceECCCCCEEEEEeC-CCCeEEEEECCC
Confidence 03345668899999999887764 478899999864
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=2.6e-09 Score=81.26 Aligned_cols=213 Identities=11% Similarity=0.046 Sum_probs=133.4
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC---CCCccc-cCCccccc--c--ceeEEEEecCCCcc
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP---SPLQKF-TGHEQGIS--D--LATIRLWDVPTATS 92 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~-~~~~~~v~--~--~~~i~v~d~~~~~~ 92 (262)
.....+.++++.++++.+++...++.|.+|+.. ........+ .....+ ......+. . ...|..+|.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678999999999988888788999999876 211110000 000111 11111111 1 1257788876 443
Q ss_pred ce-ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 93 LK-TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 93 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
.. ........+..+++.++++++++...++.|..+|.. ++.... +......+..+++.++++++++...++.|..+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 21 222234678999999999988888778899999987 554422 232345789999999999766666678888888
Q ss_pred CCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccc
Q 042146 171 AST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDP 230 (262)
Q Consensus 171 ~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (262)
... +++...++....+.|.+||. +++.... ... .....
T Consensus 174 ~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~--------------------~~~~~ 231 (300)
T 2qc5_A 174 NTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP--------------------TPNAR 231 (300)
T ss_dssp TTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS--------------------STTCC
T ss_pred CCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC--------------------CCCCC
Confidence 632 34555555445566777776 3433221 110 03456
Q ss_pred eEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 231 VISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 231 v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+.++++++++.++++.. .++.|..|+.+
T Consensus 232 ~~~i~~d~~g~l~v~~~--~~~~i~~~~~~ 259 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEW--GANQIGRITND 259 (300)
T ss_dssp EEEEEECSTTCEEEEET--TTTEEEEECTT
T ss_pred ceEEEECCCCCEEEecc--CCCeEEEECCC
Confidence 78899999988766665 56788887753
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=2.2e-10 Score=87.88 Aligned_cols=183 Identities=8% Similarity=0.008 Sum_probs=117.7
Q ss_pred CCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146 4 DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR 83 (262)
Q Consensus 4 d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~ 83 (262)
++.|..|.+......+..+...+..++++++|+++++...++.|.+|+.+.. +.
T Consensus 66 ~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~--------------------------~~ 119 (305)
T 3dr2_A 66 GRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ--------------------------AH 119 (305)
T ss_dssp TTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------------------------EE
T ss_pred CCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCC--------------------------EE
Confidence 3456666543334555556677899999999997776666678888854310 00
Q ss_pred EE-ecCCCccceecccCCcceEEEEEeCCCCEEEe----ecC-------------CCeEEEEECCCCeeeeeeecCCCCe
Q 042146 84 LW-DVPTATSLKTLIGHTNYVFCINFNPQSNRIVS----DTF-------------NETIRIWDIKTGKCLKVLPAHSDPV 145 (262)
Q Consensus 84 v~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~v 145 (262)
.+ +...+ .....++.++++|+|++.++ |.. .+.|..+|..+++..... .....
T Consensus 120 ~~~~~~~~-------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 120 LLVGRYAG-------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp EEECEETT-------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred EEEeccCC-------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 00 00000 01134667999999998886 432 356888888766644333 33456
Q ss_pred eeEEEccCCCEEEEEeCC------CeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCC
Q 042146 146 TAIDFNRDGTMIVTSSYD------GLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTR 196 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d------g~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~ 196 (262)
..++|+|+++.|+.+... +.|..|++.. ++++ |.+++.+ .|.+|+. .+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CC
Confidence 889999999988877665 7899998642 3445 3344433 4778886 46
Q ss_pred ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
+.+..+.. . ..+.+++|+|+++.|..++
T Consensus 268 ~~~~~~~~----------------------~-~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 268 QLLGHIPT----------------------P-GTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp CEEEEEEC----------------------S-SCCCEEEECTTSCEEEEEE
T ss_pred CEEEEEEC----------------------C-CceeEEEEeCCCCEEEEEc
Confidence 66666553 2 2578899999998888877
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=1.2e-10 Score=91.06 Aligned_cols=219 Identities=13% Similarity=0.193 Sum_probs=126.0
Q ss_pred CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146 4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTG 71 (262)
Q Consensus 4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 71 (262)
++.+..++ +.+.+.++..-..+ . ++++|||+++++++ .++.|.+|
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi--------------------- 114 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF--------------------- 114 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE---------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE---------------------
Confidence 56677775 46677777655555 4 99999999888775 24555555
Q ss_pred CccccccceeEEEEecCCCccceecccC-------CcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeeecCC
Q 042146 72 HEQGISDLATIRLWDVPTATSLKTLIGH-------TNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLPAHS 142 (262)
Q Consensus 72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~ 142 (262)
|..+.+.+.++.-. ......++++|||++++++.. ++.|.++|+.+++.+.++....
T Consensus 115 --------------D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 115 --------------DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp --------------CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred --------------ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 44455544443211 123446899999999888763 6899999999999888875321
Q ss_pred C-------CeeeEEEccCCCEEEEEeCC-CeE-----EEEeCCC-----------CCccEEEEEcCCCeEEEEecCCCc-
Q 042146 143 D-------PVTAIDFNRDGTMIVTSSYD-GLY-----RILDAST-----------PNGKFILVGTLDNTLRLWNYSTRK- 197 (262)
Q Consensus 143 ~-------~v~~~~~~~~~~~l~~~~~d-g~i-----~~~d~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~- 197 (262)
. .-.-++.++||++++....+ +.+ .+++... +++++++ .+.+|.|++.|+.+..
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA 259 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence 0 00112445566555554433 443 1222111 2444444 5557899999986543
Q ss_pred -eeeEEe------------ccC----------CceeEE---------------EEEEecCCCeeEEc--cccceEEEEEc
Q 042146 198 -ILKTYS------------GYT----------NSKYCI---------------SSTFSVTNGKYIVS--HRDPVISVASH 237 (262)
Q Consensus 198 -~~~~~~------------~~~----------~~~~~~---------------~~~~~~~~~~~~~~--~~~~v~~~~~~ 237 (262)
.+..+. ... ...+.. -..+.....+.+.. -..++..++++
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs 339 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVS 339 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEEC
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEEC
Confidence 222221 000 000110 00111122222111 23467899999
Q ss_pred CCCC-eEEEeeecCCCcEEEEeecc
Q 042146 238 PAKN-IIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 238 p~~~-~l~~~~~d~d~~i~iw~~~~ 261 (262)
|+++ +|+++.+ .++.|.++|...
T Consensus 340 ~D~~~~ly~tn~-~~~~VsViD~~t 363 (386)
T 3sjl_D 340 QDEKPLLYALST-GDKTLYIHDAES 363 (386)
T ss_dssp SSSSCEEEEEET-TTTEEEEEETTT
T ss_pred CCCCeEEEEEcC-CCCeEEEEECCC
Confidence 9996 6776542 589999999753
No 206
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.32 E-value=4.9e-11 Score=93.73 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=87.2
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecC------CCC
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAH------SDP 144 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~------~~~ 144 (262)
.|.+||..+++.+..+..+..+ .++++|++++++++. .++.|.+||+.+.+.+..+... ...
T Consensus 32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp EEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred eEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence 3555566667766666655555 899999999999876 3578999999998888777542 245
Q ss_pred eeeEEEccCCCEEEEEeC--CCeEEEEeCCC-------------------CC-ccEEEEEcCCCeEEEEecCC-Ccee
Q 042146 145 VTAIDFNRDGTMIVTSSY--DGLYRILDAST-------------------PN-GKFILVGTLDNTLRLWNYST-RKIL 199 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~-------------------~~-~~~l~~~~~dg~i~i~d~~~-~~~~ 199 (262)
...++++|+|++|+++.. ++.|.+||+.+ |+ ...+++.+.||.+.+|++.. ++..
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 688999999999998874 68999999864 11 24566777888888888765 5544
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=2.6e-10 Score=90.68 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=63.4
Q ss_pred Cceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccCC
Q 042146 5 RSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72 (262)
Q Consensus 5 ~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 72 (262)
+++..++ +.+.+.++..-..+ .++++||+++++++. .++.|.++|.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~-------------------- 156 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP-------------------- 156 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT--------------------
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC--------------------
Confidence 5666665 56677777655555 899999999888876 3456666654
Q ss_pred ccccccceeEEEEecCCCccceecccC-------CcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeee
Q 042146 73 EQGISDLATIRLWDVPTATSLKTLIGH-------TNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLP 139 (262)
Q Consensus 73 ~~~v~~~~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~ 139 (262)
.+.+.+..+.-. ......+.++||+++++++.. ++.|.+.|+.+++.+..+.
T Consensus 157 ---------------~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 157 ---------------VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ---------------TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ---------------CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 344433332210 112335678888888877653 5678888888887776664
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=2.4e-10 Score=97.44 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=77.1
Q ss_pred cCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~ 99 (262)
+|...+..++|||||++||-+.. .|. ....|+++|+.+++.+.... +
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~-------------------------------~~~~i~v~dl~tg~~~~~~~-~ 173 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGS-------------------------------DWREIHLMDVESKQPLETPL-K 173 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSC-------------------------------CEEEEEEEETTTCSEEEEEE-E
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCC-------------------------------ceEEEEEEECCCCCCCcccc-C
Confidence 46667899999999998885432 111 00034555666666443211 1
Q ss_pred CcceEEEEEeCCCCEEEeecCCC-------------eEEEEECCCCe----eeeeeec-CCCCeeeEEEccCCCEEEEEe
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNE-------------TIRIWDIKTGK----CLKVLPA-HSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg-------------~i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 161 (262)
......++|+ |++.|+.++.+. .|++|++.+.. .+..... |......+.|+|||++|+...
T Consensus 174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 1113567899 999888877663 49999987654 3333333 455678899999999876544
Q ss_pred C----CCeEEEEeCCC
Q 042146 162 Y----DGLYRILDAST 173 (262)
Q Consensus 162 ~----dg~i~~~d~~~ 173 (262)
. ...|.++|+..
T Consensus 253 ~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ESSSSCCEEEEEETTS
T ss_pred ccCCCCcEEEEEECCC
Confidence 2 25899999865
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.28 E-value=9.1e-13 Score=103.84 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCC
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (262)
++..+++++.||.|+.||.. +++.+..+.. ..+.+..+.+++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~-----------------------------------tG~~~W~~~~--~~~~s~p~~~~g~ 50 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR-----------------------------------TGSIKWTLKE--DPVLQVPTHVEEP 50 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT-----------------------------------TCCEEEEEEC--CCSCCCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECC-----------------------------------CCCEEEEecC--CCceecceEcCCC
Confidence 56788999999988888654 3444433332 2333333445677
Q ss_pred EEEeecCCCeEEEEECCCCeeeeeeecCCC-Cee-eEEEccCCCEEEEEeCCCeEEEEeCCC----------------CC
Q 042146 114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVT-AIDFNRDGTMIVTSSYDGLYRILDAST----------------PN 175 (262)
Q Consensus 114 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------~~ 175 (262)
.+++++.||.|+.||.++++.+..+..+.. .+. +..+. .+..+++++.++.++.||..+ |+
T Consensus 51 ~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~ 129 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPS 129 (369)
T ss_dssp CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------
T ss_pred EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCccccccc
Confidence 888888999999999999987766543311 111 01111 345677888899999999875 46
Q ss_pred ccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 176 GKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
+..+++++.++.|+.||.++|+.+..+.
T Consensus 130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 130 TSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ---EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred CCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 7789999999999999999999877765
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.26 E-value=3.8e-08 Score=74.71 Aligned_cols=211 Identities=13% Similarity=0.073 Sum_probs=127.8
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC-CCCC-CCCCCcccc-CCccccc--c--ceeEEEEecCCCccce
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-FDST-PPSPLQKFT-GHEQGIS--D--LATIRLWDVPTATSLK 94 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~-~~~~~~~~~-~~~~~v~--~--~~~i~v~d~~~~~~~~ 94 (262)
+...+.++++.++++++++...++.|..+|...... .... .......+. .....+. . ...|..+|.. ++...
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE
Confidence 346789999999999888877788999998763111 0000 000001111 1111111 1 1257777766 44332
Q ss_pred -ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 95 -TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 95 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+......+..+++++++++.++...++.|..+|. +++.... ...+...+..+++.++++++++....+.|..||..
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 22334467899999999997777777889999998 5554332 22334568899999999877776667789888864
Q ss_pred C--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146 173 T--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI 232 (262)
Q Consensus 173 ~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (262)
. ++++..++...++.|..||. +++.. .+... .....+.
T Consensus 218 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~--------------------~~~~~~~ 275 (300)
T 2qc5_A 218 GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ--------------------TENAEPH 275 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC--------------------STTCCCC
T ss_pred CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC--------------------ccCCccc
Confidence 2 34554444445567777776 33322 22110 0334578
Q ss_pred EEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 233 SVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+++++++|.++++. .. .|..++++
T Consensus 276 ~i~~~~~g~l~v~~---~~-~i~~~~p~ 299 (300)
T 2qc5_A 276 GITFGKDGSVWFAL---KC-KIGKLNLN 299 (300)
T ss_dssp CEEECTTSCEEEEC---SS-EEEEEEEC
T ss_pred eeEeCCCCCEEEEc---cC-ceEEeCCC
Confidence 89999998866554 33 56666654
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=1.4e-08 Score=77.48 Aligned_cols=182 Identities=9% Similarity=0.073 Sum_probs=114.4
Q ss_pred cccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146 19 LNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI 97 (262)
Q Consensus 19 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~ 97 (262)
+..+..-..+..|+|+ +.++++...++.|..||... ++. ..+
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-----------------------------------~~~-~~~- 50 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT-----------------------------------KQV-QRV- 50 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTT-----------------------------------CCE-EEE-
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCC-----------------------------------CcE-EEE-
Confidence 3344445668889995 45666666778888876542 221 111
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC----CCCeeeEEEccCCCEEEEEeC-----------
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH----SDPVTAIDFNRDGTMIVTSSY----------- 162 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~----------- 162 (262)
.....+.+++++|+++++++. ++.|.+||.++++........ ...+.+++++|+|+++++...
T Consensus 51 ~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 51 TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence 123568899999999966554 568999999887654332221 234788999999996665432
Q ss_pred CCeEEEEeCCC------------------CCccEE-EEEcCCCeEEEEec--CCCceee--EEeccCCceeEEEEEEecC
Q 042146 163 DGLYRILDAST------------------PNGKFI-LVGTLDNTLRLWNY--STRKILK--TYSGYTNSKYCISSTFSVT 219 (262)
Q Consensus 163 dg~i~~~d~~~------------------~~~~~l-~~~~~dg~i~i~d~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 219 (262)
.+.|..++... ++++.| ++.+.++.|.+|++ .++.... .+....
T Consensus 129 ~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~------------- 195 (297)
T 3g4e_A 129 QGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE------------- 195 (297)
T ss_dssp CEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-------------
T ss_pred CcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-------------
Confidence 23455555332 667655 45566788888886 4554321 111000
Q ss_pred CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+...+..++++++|.+.++.. .++.|..|+.+
T Consensus 196 ------~~~~~p~g~~~d~~G~lwva~~--~~~~v~~~d~~ 228 (297)
T 3g4e_A 196 ------KEEQIPDGMCIDAEGKLWVACY--NGGRVIRLDPV 228 (297)
T ss_dssp ------GGGCEEEEEEEBTTSCEEEEEE--TTTEEEEECTT
T ss_pred ------CCCCCCCeeEECCCCCEEEEEc--CCCEEEEEcCC
Confidence 0334577889999998777766 67788888875
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=2.8e-09 Score=83.11 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=111.9
Q ss_pred cCcCceEEEEEccCCCeEEEecC-----CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSA-----EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
.|...+..++++++++++++-.. ++.|.+||+.+.+ .++.+.+...
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~------------------------~~~~~~~~~~----- 114 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ------------------------LSRVIYLPPP----- 114 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE------------------------EEEEEECCTT-----
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe------------------------EEEEEECChh-----
Confidence 45677899999999886665433 4566666553211 0222222110
Q ss_pred cccCCcceEEEEEeCCCCEE-Eeec---CCCeEEEEECCCCeeeeeeecCC-----------------------------
Q 042146 96 LIGHTNYVFCINFNPQSNRI-VSDT---FNETIRIWDIKTGKCLKVLPAHS----------------------------- 142 (262)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~~~----------------------------- 142 (262)
...+...+..++++|++..+ ++.. .++.|.+||+.+++..+.+..|.
T Consensus 115 ~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 194 (343)
T 2qe8_A 115 ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH 194 (343)
T ss_dssp TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC
T ss_pred hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee
Confidence 01123456789999865554 4544 57899999998877655443321
Q ss_pred CCeeeEEEccCCCEEEEEeCCC-eEEEEeCC-----------------------C-------CCccEEEEEcCCCeEEEE
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDG-LYRILDAS-----------------------T-------PNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~-----------------------~-------~~~~~l~~~~~dg~i~i~ 191 (262)
..+..|+|+|+++.|+.+..++ .+..++.. . +++.++++...++.|.+|
T Consensus 195 ~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~ 274 (343)
T 2qe8_A 195 LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVI 274 (343)
T ss_dssp CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEE
T ss_pred cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEE
Confidence 2357899999999888887665 55555421 0 567777777788889999
Q ss_pred ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
|..+++....... . +...+.+++|.|++.++++.+
T Consensus 275 d~~~G~~~~~~~~-~--------------------~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 275 TSADRAYKLLVTD-E--------------------KLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp ETTTTEEEEEEEC-G--------------------GGSCEEEEEECTTSCEEEEEC
T ss_pred ECCCCCEEEEEEC-C--------------------ceecCCeeEECCCCcEEEEeC
Confidence 9855653322221 0 234688999999998888876
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=1.3e-08 Score=78.70 Aligned_cols=121 Identities=15% Similarity=0.046 Sum_probs=76.4
Q ss_pred cceEEEEEeCCCCEEEeecC------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCC-
Q 042146 101 NYVFCINFNPQSNRIVSDTF------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAS- 172 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~- 172 (262)
..++.++++|+|+++++... .+.|..++ +++... +..+......++|+|+++.++.+ +.++.|.+||+.
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~ 210 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 210 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence 46889999999997765432 24566666 454332 32233456789999999876555 457889999864
Q ss_pred -C--------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 173 -T--------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 173 -~--------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
. +++.+.++...++.|.+||. +++.+..+..
T Consensus 211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------------------- 268 (326)
T 2ghs_A 211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--------------------- 268 (326)
T ss_dssp TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---------------------
T ss_pred ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC---------------------
Confidence 1 22333333333455666665 4555444443
Q ss_pred ccccceEEEEEc-CCCCeEEEee
Q 042146 226 SHRDPVISVASH-PAKNIIASGA 247 (262)
Q Consensus 226 ~~~~~v~~~~~~-p~~~~l~~~~ 247 (262)
+...+.+++|+ |++..|+.++
T Consensus 269 -~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 269 -PGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp -SCSBEEEEEEESTTSCEEEEEE
T ss_pred -CCCCcEEEEEecCCCCEEEEEe
Confidence 44568999998 8887665544
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.21 E-value=7.7e-10 Score=95.03 Aligned_cols=191 Identities=12% Similarity=0.044 Sum_probs=110.1
Q ss_pred EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc----ceecccCCcc
Q 042146 27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS----LKTLIGHTNY 102 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~----~~~~~~~~~~ 102 (262)
..++|+|| +.|+.++.++... .. . .. .......|++|++.++.. +.....+...
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~-----~~----~--------~~----~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKE-----GQ----A--------FQ----ALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC-----------------------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred ccEEEECC-CEEEEEEecCccc-----cc----c--------cc----cCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 57889999 9888887765310 00 0 00 000012467777766542 2222233345
Q ss_pred eEEEEEeCCCCEEEeecCC-----CeEEEEECCCC--eeeeeeecCCCCeeeEEEccCCCEEEEEeCC----CeEEEEeC
Q 042146 103 VFCINFNPQSNRIVSDTFN-----ETIRIWDIKTG--KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD----GLYRILDA 171 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~ 171 (262)
+..+.|+|||++|+..+.+ ..|.+||+.++ +....+..+...+.... +|+++.|+..+.+ +.|.+||+
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence 8899999999988876644 38999999876 31445555555555553 4889888877753 45999987
Q ss_pred CCC---------------------CccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 172 STP---------------------NGKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 172 ~~~---------------------~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
..+ ++.++++...++..+||.+. +++....+.. ....
T Consensus 349 ~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~---------------------~~~~ 407 (741)
T 1yr2_A 349 SGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL---------------------PGIG 407 (741)
T ss_dssp SSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC---------------------SSSC
T ss_pred CCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC---------------------CCCe
Confidence 642 12233333344433333222 1222222221 0345
Q ss_pred ceEEEEEcCCCCeEEEe--eecCCCcEEEEeecc
Q 042146 230 PVISVASHPAKNIIASG--ALDNDRTMKIWTQEK 261 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~--~~d~d~~i~iw~~~~ 261 (262)
.+..++++|+++.|+.. +....+.|++||+..
T Consensus 408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 68889999998866533 211357899998753
No 215
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.20 E-value=4.5e-08 Score=72.73 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=122.3
Q ss_pred ccccceecccCcC--ceEEEEEccCCCeEEEecC--CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146 12 PYTLTQTLNGHLR--AVSYVKFSHDGRLLTSSSA--EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV 87 (262)
Q Consensus 12 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~ 87 (262)
+++.+.++. |.. ....++|+|++.++++.+. ++.|.+. |.
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~i-----------------------------------D~ 51 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQV-----------------------------------AL 51 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEE-----------------------------------ET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEE-----------------------------------EC
Confidence 345666664 443 3679999998765555543 4555555 55
Q ss_pred CCCccceecccCC-cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 88 PTATSLKTLIGHT-NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 88 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
.+++.+..+.-.. .....+++. .+.+.++.-.++.+.++|..+.+.+.++..... ....++++++.++++..++.|
T Consensus 52 ~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l 128 (266)
T 2iwa_A 52 QTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSIL 128 (266)
T ss_dssp TTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEE
T ss_pred CCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeE
Confidence 5666655543111 122345555 223444555688999999999999888864311 234466788878777788999
Q ss_pred EEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 167 RILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 167 ~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
.++|..+ .++...+..-.++.|.+.|..+++.+..+.......... ...
T Consensus 129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~------~~~- 201 (266)
T 2iwa_A 129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI------DEG- 201 (266)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH------HTT-
T ss_pred EEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc------ccc-
Confidence 9999876 134333333356789999999999988886421000000 000
Q ss_pred eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.......+.++|+|+++.|+.++. ..+.+.+-++.
T Consensus 202 --~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~ 236 (266)
T 2iwa_A 202 --FRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLH 236 (266)
T ss_dssp --CTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEE
T ss_pred --ccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEe
Confidence 001135689999999875555442 56778777664
No 216
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=96.09 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=84.2
Q ss_pred CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146 3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80 (262)
Q Consensus 3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (262)
.|+.+..|+ +.+.+-+++. +++.+..+.+++..+++++.||.|+.||.++
T Consensus 17 ~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-------------------------- 68 (369)
T 2hz6_A 17 LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-------------------------- 68 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------------------------------
T ss_pred CCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC--------------------------
Confidence 467777775 4455555544 4555555666777788888889888886643
Q ss_pred eEEEEecCCCccceecccCCc-ceE-EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 81 TIRLWDVPTATSLKTLIGHTN-YVF-CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
++.+..+..+.. .+. +..+ ..+..+++++.++.|+.||.++++.+..+..+. ...++|++..++
T Consensus 69 ---------G~~~w~~~~~~~~~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~ 134 (369)
T 2hz6_A 69 ---------NEGLTKLPFTIPELVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLY 134 (369)
T ss_dssp ----------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EE
T ss_pred ---------CceeeeeeccCccccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEE
Confidence 222222211100 000 0001 134567788889999999999999888876543 245567888899
Q ss_pred EEeCCCeEEEEeCCC----------------CCc-----cEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 159 TSSYDGLYRILDAST----------------PNG-----KFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~----------------~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
+++.|+.|+.||.++ .++ ..+++++.+|.|+.||.++|+.+..+.
T Consensus 135 ~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 135 LGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 999999999999876 122 567788899999999999999888776
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.17 E-value=4.8e-09 Score=82.13 Aligned_cols=116 Identities=10% Similarity=0.025 Sum_probs=88.8
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCC-------CC
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHS-------DP 144 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~ 144 (262)
|.++|..+++.+.++.....+ . ++++|++++++++. .++.|.+||..+.+.+..+.... ..
T Consensus 61 V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~ 138 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY 138 (386)
T ss_dssp EEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred EEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCC
Confidence 556677777777777654555 4 99999999988775 35789999999999888775322 24
Q ss_pred eeeEEEccCCCEEEEEeC--CCeEEEEeCCC---------C--------CccEEEEEcCCCeEEEEecCC-Ccee
Q 042146 145 VTAIDFNRDGTMIVTSSY--DGLYRILDAST---------P--------NGKFILVGTLDNTLRLWNYST-RKIL 199 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~---------~--------~~~~l~~~~~dg~i~i~d~~~-~~~~ 199 (262)
...++++|||++++++.. ++.|.++|+.+ + ..+.+++.+.||.+.+.++.+ ++..
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 578999999999888864 68999999987 1 234566778899999999876 5553
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.14 E-value=1.5e-09 Score=84.85 Aligned_cols=47 Identities=9% Similarity=-0.087 Sum_probs=33.0
Q ss_pred ceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCC
Q 042146 6 SLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSS 54 (262)
Q Consensus 6 ~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~ 54 (262)
++..++ .++.+.++..-..+ .+.++||+++++++. .++.|.+||..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 444554 56777777755566 799999999888885 356677775543
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=7.4e-08 Score=74.50 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=105.5
Q ss_pred ceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 25 AVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 25 ~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
-..+..|+|++ .++++...++.|..||.++ ++. ..+. ....+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-----------------------------------~~~-~~~~-~~~~v 92 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLAS-----------------------------------GRK-TVHA-LPFMG 92 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTT-----------------------------------TEE-EEEE-CSSCE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCC-----------------------------------CcE-EEEE-CCCcc
Confidence 35678899874 4556666677777775532 221 1111 23468
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEEEEeC------CCeEEEEeCCC
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIVTSSY------DGLYRILDAST 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~ 173 (262)
.+++++|+++++++. .+ .|.+||..+++....... ....+.+++++|+|+++++... .+.|..++ ..
T Consensus 93 ~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g 169 (326)
T 2ghs_A 93 SALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG 169 (326)
T ss_dssp EEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT
T ss_pred eEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC
Confidence 899999999877765 33 499999988765432221 1235889999999987665542 24555555 21
Q ss_pred ------------------CCccEEE-EEcCCCeEEEEecC--CC-cee--eEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146 174 ------------------PNGKFIL-VGTLDNTLRLWNYS--TR-KIL--KTYSGYTNSKYCISSTFSVTNGKYIVSHRD 229 (262)
Q Consensus 174 ------------------~~~~~l~-~~~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (262)
++++.++ +.+.++.|.+||+. ++ +.. ..+..... ...
T Consensus 170 ~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-------------------~~~ 230 (326)
T 2ghs_A 170 KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-------------------IKG 230 (326)
T ss_dssp EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-------------------SSS
T ss_pred cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-------------------CCC
Confidence 5666554 44556788888875 44 321 11111000 223
Q ss_pred ceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 230 PVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+..++++++|.++++.. .++.|..|+.+
T Consensus 231 ~p~gi~~d~~G~lwva~~--~~~~v~~~d~~ 259 (326)
T 2ghs_A 231 GMDGSVCDAEGHIWNARW--GEGAVDRYDTD 259 (326)
T ss_dssp EEEEEEECTTSCEEEEEE--TTTEEEEECTT
T ss_pred CCCeeEECCCCCEEEEEe--CCCEEEEECCC
Confidence 456778888887666665 45677777753
No 220
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=5.1e-08 Score=71.70 Aligned_cols=185 Identities=13% Similarity=0.139 Sum_probs=114.9
Q ss_pred ccccceecccCcCc--eEEEEEccCCCeEEEecCCC--eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146 12 PYTLTQTLNGHLRA--VSYVKFSHDGRLLTSSSAEK--TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV 87 (262)
Q Consensus 12 ~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~ 87 (262)
.++.++++. |... ...+.|+ ++.++.+.+.+| .|+.+ |+
T Consensus 30 ~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~v-----------------------------------D~ 72 (262)
T 3nol_A 30 DYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKV-----------------------------------DI 72 (262)
T ss_dssp EEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEE-----------------------------------CT
T ss_pred ceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEE-----------------------------------EC
Confidence 345666663 5433 4788888 677677777665 55555 55
Q ss_pred CCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 88 PTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
.+++.+..+.-.. ......+.++++.|+ ..-.++.+.+||..+.+.+.++..... -..+ ++++..|+.+..++.|
T Consensus 73 ~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~gl--t~dg~~L~~SdGs~~i 148 (262)
T 3nol_A 73 ESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGL--THNDQYLIMSDGTPVL 148 (262)
T ss_dssp TTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCCE--EECSSCEEECCSSSEE
T ss_pred CCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC-ceEE--ecCCCEEEEECCCCeE
Confidence 5666665554222 222222223344444 445688999999999999998875332 2344 4677878877778899
Q ss_pred EEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 167 RILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 167 ~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
.++|..+ .++...+..-.+..|.+.|.++++.+..+....-.... ..
T Consensus 149 ~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~---------~~ 219 (262)
T 3nol_A 149 RFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA---------GP 219 (262)
T ss_dssp EEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS---------CS
T ss_pred EEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc---------cc
Confidence 9999876 22333333335678889999999998888753210000 00
Q ss_pred eEEccccceEEEEEcCCCCeEEEee
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
......-.+.|+|+|+++.|+..+
T Consensus 220 -~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 220 -LPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -ccCcCCceEEEEEcCCCCEEEEEC
Confidence 000224568999999988877776
No 221
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.05 E-value=2.7e-07 Score=67.91 Aligned_cols=182 Identities=10% Similarity=0.033 Sum_probs=115.7
Q ss_pred ccceecccCcCc--eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 14 TLTQTLNGHLRA--VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 14 ~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
+.++++. |... ...+.|+ ++.++.+.+.+|.|+++|+ ++++
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~-----------------------------------~Tgk 86 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSL-----------------------------------ESAQ 86 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCS-----------------------------------SCSS
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEEC-----------------------------------CCCc
Confidence 4556663 4333 4678887 4677788888888877755 4455
Q ss_pred cceecccCCcce--EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 92 SLKTLIGHTNYV--FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 92 ~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
.+..+ - .... ..+++.. +++......++.+.+||.++.+.+.++.... .-..++ ++++.|+.+..++.|.++
T Consensus 87 v~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~i 160 (268)
T 3nok_A 87 PVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFH 160 (268)
T ss_dssp CSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEE
T ss_pred EEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEE
Confidence 44444 1 1122 2344432 3444455578899999999999999987533 224454 568888888889999999
Q ss_pred eCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146 170 DAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV 225 (262)
Q Consensus 170 d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (262)
|..+ .++...+..-.+..|.+.|.++++.+..+....-.... ... ..
T Consensus 161 Dp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-------~~~--~~ 231 (268)
T 3nok_A 161 EPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-------AGQ--VT 231 (268)
T ss_dssp CTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-------TTT--CC
T ss_pred cCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-------ccc--cc
Confidence 9876 24554444446778999999999999888742100000 000 00
Q ss_pred ccccceEEEEEcCCCCeEEEee
Q 042146 226 SHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 226 ~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
....-.+.|+++|+++.|+..+
T Consensus 232 ~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 232 NPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTCCEEEEEECTTTCCEEEEE
T ss_pred CcCCceEEEEEcCCCCEEEEeC
Confidence 0224578999999877666665
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=6.1e-08 Score=74.77 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=121.4
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCCCCCCCC-CCc-cccCCcccc--cc-ceeEEEEecCCCccceecccCCcceEEEEE
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-PLQ-KFTGHEQGI--SD-LATIRLWDVPTATSLKTLIGHTNYVFCINF 108 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~-~~~~~~~~v--~~-~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 108 (262)
++.. ..++.++.|..+|............. ... ........+ .. ...|..+|.. ++....+......+.++..
T Consensus 107 ~~~l-~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDIL-YVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEE-EEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEE-EEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 7774 45667888888887621111100000 001 111111111 11 1368888887 7666665545556777777
Q ss_pred eCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------
Q 042146 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------- 173 (262)
Q Consensus 109 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------- 173 (262)
.+++.+.+.. +.|..+| .+++...........+.++...+++. +..++.++.+..+|...
T Consensus 185 d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~ 259 (330)
T 3hxj_A 185 GKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTEKWRFKTGKRIESS 259 (330)
T ss_dssp CTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCEEEEEECSSCCCSC
T ss_pred cCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCCEeEEeeCCCCcccc
Confidence 7777755544 7889999 77777777665566788888888775 55566777787777533
Q ss_pred ---CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146 174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN 250 (262)
Q Consensus 174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 250 (262)
..+..|..++.+|.|..+|. +++.+..+.. ....+.++...+++.+++ ++ .
T Consensus 260 ~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~----------------------~~~~~~~~~~d~~g~l~~-gt--~ 313 (330)
T 3hxj_A 260 PVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFET----------------------GSWIIATPVIDENGTIYF-GT--R 313 (330)
T ss_dssp CEECTTSCEEEECTTCEEEEECT-TSCEEEEEEC----------------------SSCCCSCCEECTTCCEEE-EC--T
T ss_pred ceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEc----------------------CCccccceEEcCCCEEEE-Ec--C
Confidence 22456777888888999995 6776666543 333456677777777555 55 7
Q ss_pred CCcEEEEeecc
Q 042146 251 DRTMKIWTQEK 261 (262)
Q Consensus 251 d~~i~iw~~~~ 261 (262)
+|.+++...+.
T Consensus 314 ~G~~~~~~~~~ 324 (330)
T 3hxj_A 314 NGKFYALFNLE 324 (330)
T ss_dssp TSCEEEEEC--
T ss_pred CCeEEEEeccc
Confidence 89999877653
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.01 E-value=1.3e-07 Score=72.37 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=58.7
Q ss_pred cceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 92 SLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
.+..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 3344444556678899999998 6677788899999998 454 344555667789999999999766655667888888
Q ss_pred CC
Q 042146 171 AS 172 (262)
Q Consensus 171 ~~ 172 (262)
..
T Consensus 114 ~~ 115 (305)
T 3dr2_A 114 AD 115 (305)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.00 E-value=1.3e-07 Score=74.43 Aligned_cols=115 Identities=5% Similarity=-0.103 Sum_probs=83.1
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecC-------CCC
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAH-------SDP 144 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~ 144 (262)
|.++|..+++.+..+.....+ .++++||+++++++. .++.|.+||..+.+.+..+... ...
T Consensus 49 v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 49 QWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 566677777776666544444 899999999998875 3678999999988877766432 123
Q ss_pred eeeEEEccCCCEEEEEeC--CCeEEEEeCCCC------------------CccEEEEEcCCCeEEEEecCCCceee
Q 042146 145 VTAIDFNRDGTMIVTSSY--DGLYRILDASTP------------------NGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 145 v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
...++|+|+|++|+++.. ++.|.++| .+. ..+.+++.+.||.+.++|. +++.+.
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 468999999999998874 57899999 650 1123345567888888888 776663
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.99 E-value=1.2e-06 Score=63.88 Aligned_cols=186 Identities=15% Similarity=0.070 Sum_probs=116.9
Q ss_pred ccccceecccCcC--ceEEEEEccCCCeEEEecCCC--eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146 12 PYTLTQTLNGHLR--AVSYVKFSHDGRLLTSSSAEK--TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV 87 (262)
Q Consensus 12 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~ 87 (262)
.++.+.++ .|.. -...+.|++ +.++.+.+.+| .|+.+ |+
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~v-----------------------------------D~ 50 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKV-----------------------------------DL 50 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEE-----------------------------------ET
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEE-----------------------------------EC
Confidence 34566666 4543 366888986 56666666654 55544 56
Q ss_pred CCCccceecccCCcc-eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 88 PTATSLKTLIGHTNY-VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 88 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
.+++.+....-.... -..+++. .+++......++.+.+||.++.+.+.++.....+ ..++ +++..|+.+..++.|
T Consensus 51 ~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l 126 (243)
T 3mbr_X 51 ETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVI 126 (243)
T ss_dssp TTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEE
T ss_pred CCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeE
Confidence 666666654322211 1234443 2344445567889999999999999998754332 4444 667777777789999
Q ss_pred EEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146 167 RILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222 (262)
Q Consensus 167 ~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
.++|..+ .++..++..-.+..|.+.|.++|+.+..+....-... ...
T Consensus 127 ~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~---------~~~ 197 (243)
T 3mbr_X 127 RKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD---------ADA 197 (243)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT---------TTS
T ss_pred EEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc---------ccc
Confidence 9999876 1455444444577899999999999988874321000 000
Q ss_pred eEEccccceEEEEEcCCCCeEEEee
Q 042146 223 YIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 223 ~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
.-.....-.+.|+++|+++.|+..+
T Consensus 198 ~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 198 LTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccCCcCCceEEEEEcCCCCEEEEEC
Confidence 0000224578999999887777766
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.99 E-value=1.5e-07 Score=73.35 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=65.2
Q ss_pred CceEEEEEccCCCeEEEec--CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 24 RAVSYVKFSHDGRLLTSSS--AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
..+..++++|+|+.+++.. .++.++||.+... .+.-| .... .....+..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-------------------------~~~~~--p~~~--~~~~~~~~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-------------------------GLIPF--PPQS--GNAIITFD 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-------------------------EEEES--CCCC--SSCCCCCS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-------------------------CeecC--CCcc--cCccccee
Confidence 6789999999999988864 2333555543210 00000 0000 01123556
Q ss_pred ceEEEEEeCCCCEEEeecC-----CCeEEEEECCCCeeeeeeecC------CCCeeeEEEccCCCEE
Q 042146 102 YVFCINFNPQSNRIVSDTF-----NETIRIWDIKTGKCLKVLPAH------SDPVTAIDFNRDGTMI 157 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l 157 (262)
.+..++++++++++++-.. ++.|.+||+.+++.+..+... ...+..++++|++..+
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEE
Confidence 7899999999887665443 578999999999877666432 2345788888754433
No 227
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.96 E-value=4.2e-07 Score=69.50 Aligned_cols=170 Identities=12% Similarity=0.163 Sum_probs=100.3
Q ss_pred CcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCC-CC---C---CCCcccc-CCcccc--ccc-----------
Q 042146 22 HLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDS-TP---P---SPLQKFT-GHEQGI--SDL----------- 79 (262)
Q Consensus 22 h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~-~~---~---~~~~~~~-~~~~~v--~~~----------- 79 (262)
+...+.+++++++ ++++++.. .+.|.+||.+ ...... .. . .....+. .....+ ...
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 5567899999999 77555554 4478889876 322111 10 0 0011111 111111 111
Q ss_pred ------eeEEEEecCCCccceecccCCcceEEEEEe----CCCCEEE-eecCCCeEEEEECC-CCe-----eeeeeecCC
Q 042146 80 ------ATIRLWDVPTATSLKTLIGHTNYVFCINFN----PQSNRIV-SDTFNETIRIWDIK-TGK-----CLKVLPAHS 142 (262)
Q Consensus 80 ------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-~~~~dg~i~vwd~~-~~~-----~~~~~~~~~ 142 (262)
..|..++.. ++. ..+..+......++++ |+++.++ +...++.|.+||+. +++ ....+..+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 235555543 332 2222333456889999 9997654 44567899999986 443 222333333
Q ss_pred -CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEE-EEEcCCCeEEEEecCC
Q 042146 143 -DPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFI-LVGTLDNTLRLWNYST 195 (262)
Q Consensus 143 -~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l-~~~~~dg~i~i~d~~~ 195 (262)
.....++++++|+++++...++.|.+||..+ ++++.| ++...++.|..|++..
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5678899999999888888889999999873 456633 3444456777777653
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.94 E-value=5.9e-08 Score=82.75 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=58.1
Q ss_pred eEEEEecCCCcc----ceeccc-CCcceEEEEEeCCCCEEEeec----CCCeEEEEECCCCe-eeeeeecCCCCeeeEEE
Q 042146 81 TIRLWDVPTATS----LKTLIG-HTNYVFCINFNPQSNRIVSDT----FNETIRIWDIKTGK-CLKVLPAHSDPVTAIDF 150 (262)
Q Consensus 81 ~i~v~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~ 150 (262)
.|++|++.++.. +..... |...+..+.++||+++|+... ....|+++|+.++. ....+..+....... +
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~ 287 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-V 287 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-E
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-E
Confidence 467777766542 222333 444578899999999875432 33589999997763 344555555555554 6
Q ss_pred ccCCCEEEEEe-CC---CeEEEEeCCC
Q 042146 151 NRDGTMIVTSS-YD---GLYRILDAST 173 (262)
Q Consensus 151 ~~~~~~l~~~~-~d---g~i~~~d~~~ 173 (262)
++++..|+..+ .+ +.|..+|+..
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 67666555444 33 5788888875
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.92 E-value=4.1e-08 Score=78.15 Aligned_cols=158 Identities=9% Similarity=-0.015 Sum_probs=108.8
Q ss_pred eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecC-------C
Q 042146 80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAH-------S 142 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~-------~ 142 (262)
..|.++|..+.+.+.++..-..+ .++++||+++++++. .++.|.++|..+++.+..+... .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 46888888888888887755555 899999999988876 3678999999999988877532 1
Q ss_pred CCeeeEEEccCCCEEEEEeC--CCeEEEEeCCC---------C--------CccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 143 DPVTAIDFNRDGTMIVTSSY--DGLYRILDAST---------P--------NGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~---------~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
.....++++|||++++++.. ++.|.+.|+.+ + ....+++.+.||.+.+.+..+++......
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~ 256 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT 256 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence 34578999999999998874 57899999887 1 12344566678888777776555543211
Q ss_pred ccCCceeEEEEEEecCCCeeEEccccc-eEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146 204 GYTNSKYCISSTFSVTNGKYIVSHRDP-VISVASHPAKNIIASGALDNDRTMKIWTQ 259 (262)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~~d~d~~i~iw~~ 259 (262)
.. +.. ...+ ...+.+.|++..++..+ ..+.|.+.|+
T Consensus 257 -~~---------~~v--------~~~p~~~~~~~~~dg~~~~~~s--~~g~V~ViD~ 293 (426)
T 3c75_H 257 -EV---------FHT--------EDELLINHPAFSLRSGRLVWPT--YTGKIFQADL 293 (426)
T ss_dssp -CC---------CSC--------TTSCBCSCCEECTTTCEEEEEB--TTSEEEEEEE
T ss_pred -ee---------ecc--------CCCceeeEeeecCCCCEEEEEe--CCCcEEEEec
Confidence 00 000 1111 12345678877766666 5677777776
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.92 E-value=5.3e-07 Score=71.02 Aligned_cols=168 Identities=10% Similarity=0.031 Sum_probs=102.7
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCcc-ccCCcccc---ccceeEEEEecCCCccceecccCCcce-----
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQK-FTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYV----- 103 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~-~~~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v----- 103 (262)
++..++.++.++.|..+|.++.+.. .......... .......+ ...+.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 4556778888999999998754321 1000000000 00001111 112368899999998877655322111
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-------eeeEEEcc--CCCEEEEEeCCCeEEEEeCCC-
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-------VTAIDFNR--DGTMIVTSSYDGLYRILDAST- 173 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~- 173 (262)
...... +..++.++.++.|..+|.++++.+......... +..+.-.| .+..++.++.++.+..+|..+
T Consensus 182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 112222 457888888999999999999988776532110 00011122 356777888889999999865
Q ss_pred ---------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
.++..++.++.++.|..+|..+++.+....
T Consensus 260 ~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 260 QIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred cEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 245667778889999999999999877665
No 231
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.91 E-value=1.8e-07 Score=74.58 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=92.0
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEeCCC-----
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDAST----- 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~----- 173 (262)
.....|+++|+++++++...++.|++||+.+++....... ..... ++|+|+++.|+++..++ .|.+++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4578999999999888888889999999988776655544 23334 99999999999888766 677776431
Q ss_pred -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc--ceE
Q 042146 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD--PVI 232 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~ 232 (262)
+++..|+.+..++.|+.||..++... .+...... +... +..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~-----------------g~~~~~P~~ 270 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELS-----------------GSLGTNPGP 270 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCC-----------------SCCCCSSCC
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccccc-----------------CCCCCCccc
Confidence 32344555666788888988766532 22110000 0111 123
Q ss_pred EEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146 233 SVASHPA-KNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 233 ~~~~~p~-~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.++|+|+ +.++++-. .++.|+.|+.+
T Consensus 271 ~ia~~p~~g~lyv~d~--~~~~I~~~~~~ 297 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQ--NLSSVYKITPD 297 (409)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEECTT
T ss_pred cEEEeCCCCEEEEEeC--CCCEEEEEecC
Confidence 8999995 55555555 57888888765
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.86 E-value=5.6e-07 Score=71.37 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=95.2
Q ss_pred ceEEEEEeCCCCEEEeecCC------CeEEEEECCCCeeeeeeecCCC---CeeeEEEccCCCEEEEEe-----------
Q 042146 102 YVFCINFNPQSNRIVSDTFN------ETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSS----------- 161 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~----------- 161 (262)
.-..+.+.|+| +++++..+ |.|.++|.++.+.+..+..... --..+.|+|+++.++++.
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 34567788998 66665544 7899999999998888863322 235688899999988885
Q ss_pred --------CCCeEEEEeCCC------------------------CCccEEEEEc------CCCeEEEEecCCCceeeEEe
Q 042146 162 --------YDGLYRILDAST------------------------PNGKFILVGT------LDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 162 --------~dg~i~~~d~~~------------------------~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 203 (262)
...+|.+||+.. |+++++.+++ .+++|.+|....++.. ..+
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~ 296 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEK 296 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEE
Confidence 478999999864 4566666555 3456766655443211 100
Q ss_pred ccCCceeEEEEEEecCCCeeE---E---ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 204 GYTNSKYCISSTFSVTNGKYI---V---SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.+..........+- . +-......+.+|||+++|.++.+ ..+.|.++++.
T Consensus 297 -------vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~d~VavfdV~ 351 (462)
T 2ece_A 297 -------VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GIGEVRQYDIS 351 (462)
T ss_dssp -------EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TTTEEEEEECS
T ss_pred -------EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-CCCEEEEEEec
Confidence 00000000000000 0 00245788999999999999987 47899999984
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.84 E-value=8.3e-07 Score=69.88 Aligned_cols=194 Identities=11% Similarity=0.051 Sum_probs=118.8
Q ss_pred CCeEEEecCCCeEEEeecCCCCCC-CCCCCCCC--------ccccCCcccc-ccceeEEEEecCCCccceecccCCcc--
Q 042146 35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPL--------QKFTGHEQGI-SDLATIRLWDVPTATSLKTLIGHTNY-- 102 (262)
Q Consensus 35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~--------~~~~~~~~~v-~~~~~i~v~d~~~~~~~~~~~~~~~~-- 102 (262)
+..++.++.++.|..+|..+.+.. ........ .......-.+ ...+.+..+|..+++.+.........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 346778888999999998664321 11000000 0000000000 11236888999888877665422110
Q ss_pred --eE---EEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146 103 --VF---CINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-- 173 (262)
Q Consensus 103 --v~---~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 173 (262)
+. .+...| .+..++.++.++.+..+|.++++.+..... .....+.. ++..++.++.++.+..+|..+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 00 011111 356777888899999999999998877642 23344443 466788888899999998765
Q ss_pred -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE-EE
Q 042146 174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS-VA 235 (262)
Q Consensus 174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~ 235 (262)
..+..|++++.+|.|+.+|.++++.+....... ..+.. ..
T Consensus 299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~----------------------~~~~~~~~ 356 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS----------------------SGFQTEPV 356 (376)
T ss_dssp EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCT----------------------TCBCSCCE
T ss_pred EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCC----------------------CcceeCCE
Confidence 234678889999999999999999887776421 11111 11
Q ss_pred EcCCCCeEEEeeecCCCcEEEEe
Q 042146 236 SHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 236 ~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
. .+..|+.++ .+|.|..|+
T Consensus 357 ~--~~~~l~v~~--~~G~l~~~~ 375 (376)
T 3q7m_A 357 A--ADGKLLIQA--KDGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEEB--TTSCEEEEE
T ss_pred E--ECCEEEEEe--CCCEEEEEe
Confidence 1 245677777 789999886
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=6.5e-07 Score=76.03 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=109.7
Q ss_pred EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CC----
Q 042146 27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HT---- 100 (262)
Q Consensus 27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~---- 100 (262)
..++++|++..++.++.++.. |...... . .....+ ....|..+|..+++.+..++. |.
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~--w~~~~~~--------~-----~~gd~~-~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSP--WSHKVRS--------P-----KGGDNL-YLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp SCEEEETTTTEEEEECCCEES--SCHHHHS--------T-----TCCCCT-TTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cceeEcCCCCEEEEECCCCcc--ccCCCCC--------c-----cCCCCe-eeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 357888888888888777654 5321100 0 000000 112578888888888766542 21
Q ss_pred ---cceEEEEEeCCC---CEEEeecCCCeEEEEECCCCeeeeeeecCCC-----------Ce------------------
Q 042146 101 ---NYVFCINFNPQS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-----------PV------------------ 145 (262)
Q Consensus 101 ---~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v------------------ 145 (262)
.....+....+| +.++.++.+|.|+++|.++++.+..+..... ++
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122233344467 6789999999999999999998876642210 01
Q ss_pred ------eeEEEccCCCEEEEEeC-------------------------------------------CCeEEEEeCCC---
Q 042146 146 ------TAIDFNRDGTMIVTSSY-------------------------------------------DGLYRILDAST--- 173 (262)
Q Consensus 146 ------~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~~~d~~~--- 173 (262)
..++++|+..++++... .|.|..||+.+
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 15788998888877543 27899999876
Q ss_pred ----------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 ----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 ----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
..+..++.++.||.+++||.++|+.+..+..
T Consensus 470 ~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 470 AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 3567788899999999999999999999875
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.83 E-value=9.1e-07 Score=75.29 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=85.4
Q ss_pred CCeEEEecCCCeEEEeecCCCCCC-C--CC-CCCCCccccC----Ccccc---------ccceeEEEEecCCCccceecc
Q 042146 35 GRLLTSSSAEKTLLTYSLSSISNF-D--ST-PPSPLQKFTG----HEQGI---------SDLATIRLWDVPTATSLKTLI 97 (262)
Q Consensus 35 ~~~l~s~~~d~~i~iw~~~~~~~~-~--~~-~~~~~~~~~~----~~~~v---------~~~~~i~v~d~~~~~~~~~~~ 97 (262)
+..+++++.|+.|..+|.++.+.. . .. .......... ....+ ...+.|..+|..+++.+..+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 557888889999999998765431 0 10 0000000000 01111 013479999999999876653
Q ss_pred cC-------------------------------CcceEEEEEeCCCCEEEeecCCCe-------------------EEEE
Q 042146 98 GH-------------------------------TNYVFCINFNPQSNRIVSDTFNET-------------------IRIW 127 (262)
Q Consensus 98 ~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~vw 127 (262)
.. ......++++|+..+++.++.++. |..+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 11 011125788998899999887764 9999
Q ss_pred ECCCCeeeeeeec--CC-------CCeeeEEEccCCC---EEEEEeCCCeEEEEeCCC
Q 042146 128 DIKTGKCLKVLPA--HS-------DPVTAIDFNRDGT---MIVTSSYDGLYRILDAST 173 (262)
Q Consensus 128 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~ 173 (262)
|.++++.+..++. |. .+..-.....+|+ .++.++.+|.++++|..+
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 338 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT 338 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence 9999999988764 21 1122222223554 688888899999888654
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.83 E-value=2.7e-06 Score=67.53 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=97.3
Q ss_pred eEEEEecCCCccceecccCC---cceEEEEEeCCCCEEEeec-------------------CCCeEEEEECCCCeeeeee
Q 042146 81 TIRLWDVPTATSLKTLIGHT---NYVFCINFNPQSNRIVSDT-------------------FNETIRIWDIKTGKCLKVL 138 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~ 138 (262)
.|.++|..+.+.+.++.... ..-..+.|+|+++.+++.. ...+|.+||+.+++.+.++
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 35566666666666664221 1233578899999888874 3689999999998888877
Q ss_pred ecCC--CCeeeEEE--ccCCCEEEEEe------CCCeEEEEe-------------CC-------------------C---
Q 042146 139 PAHS--DPVTAIDF--NRDGTMIVTSS------YDGLYRILD-------------AS-------------------T--- 173 (262)
Q Consensus 139 ~~~~--~~v~~~~~--~~~~~~l~~~~------~dg~i~~~d-------------~~-------------------~--- 173 (262)
.... .....+.| +|+++++++++ .+++|.+|. +. .
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 6531 23445555 99999877766 455665422 10 1
Q ss_pred -----CCccEEEEEcC-CCeEEEEecCC---CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146 174 -----PNGKFILVGTL-DNTLRLWNYST---RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA 244 (262)
Q Consensus 174 -----~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 244 (262)
+++++|.++.. .+.|.+||+.. .+++..+...... .... . +.+.. -.+....+.++|+|++|+
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~---~-~~G~~---~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRAD---H-PAGHK---LTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBC---C-TTSCC---CCSCCCCEEECTTSSEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-cccc---c-ccccc---CCCCCCEEEEcCCCCEEE
Confidence 67888887764 57999999863 3444444421100 0000 0 00000 012357889999999988
Q ss_pred Eee
Q 042146 245 SGA 247 (262)
Q Consensus 245 ~~~ 247 (262)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 886
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.82 E-value=1.4e-07 Score=77.21 Aligned_cols=150 Identities=9% Similarity=0.129 Sum_probs=105.6
Q ss_pred EEEEecCCCccce--ecccCCcceEEEEE-e-CCCCEEEeec------------------CCCeEEEEECCCCeeeeeee
Q 042146 82 IRLWDVPTATSLK--TLIGHTNYVFCINF-N-PQSNRIVSDT------------------FNETIRIWDIKTGKCLKVLP 139 (262)
Q Consensus 82 i~v~d~~~~~~~~--~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~ 139 (262)
|.+.|+.+.+... .+. .......+++ . |+++++++++ .++.+.+.|..+.+.+.++.
T Consensus 114 VavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~ 192 (595)
T 1fwx_A 114 VARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL 192 (595)
T ss_dssp EEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence 4445555665554 332 2234667787 4 8899888874 34689999999999888876
Q ss_pred cCCCCeeeEEEccCCCEEEEEeCCC---------------eEEEEeCCC-----CCccEEEEEcCCCeEEEEecCC--Cc
Q 042146 140 AHSDPVTAIDFNRDGTMIVTSSYDG---------------LYRILDAST-----PNGKFILVGTLDNTLRLWNYST--RK 197 (262)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~~~d~~~-----~~~~~l~~~~~dg~i~i~d~~~--~~ 197 (262)
-.. ....++++|+|+++++++.+. .+.++|... ++|++... +.|.+.|.++ ++
T Consensus 193 Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~VID~~~~~~~ 267 (595)
T 1fwx_A 193 VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NGVKVVDGRKEASS 267 (595)
T ss_dssp ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TTEEEEECSGGGCC
T ss_pred eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----CcEEEEeCcccCCc
Confidence 433 457788999999999988663 467777554 45554443 4599999988 54
Q ss_pred e-eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 198 I-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
. +..++ -.....++.++|||+++++++. .+.+|.++|+.+
T Consensus 268 ~~~~~Ip-----------------------vg~~PhGv~~sPDGk~v~V~~~-~s~~VsVid~~~ 308 (595)
T 1fwx_A 268 LFTRYIP-----------------------IANNPHGCNMAPDKKHLCVAGK-LSPTVTVLDVTR 308 (595)
T ss_dssp SSEEEEE-----------------------EESSCCCEEECTTSSEEEEECT-TSSBEEEEEGGG
T ss_pred eeEEEEe-----------------------cCCCceEEEEcCCCCEEEEeCC-CCCeEEEEECcc
Confidence 4 45554 2335568999999998888775 588999999863
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.81 E-value=3.5e-07 Score=70.50 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=101.1
Q ss_pred CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC---ccccCCcccccc-ceeEEEEecCCCccceecc
Q 042146 22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL---QKFTGHEQGISD-LATIRLWDVPTATSLKTLI 97 (262)
Q Consensus 22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~v~~-~~~i~v~d~~~~~~~~~~~ 97 (262)
+...+.++...+++. +..++.+ |..+|............... ..+....-.+.. .+.|..+|.. ++......
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 344456777766665 5555544 88887533221111111110 011111111111 2367888877 66665555
Q ss_pred cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146 98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---- 173 (262)
Q Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---- 173 (262)
.....+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...+++.+++. + +.+..+|...
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d~~g~~~~ 208 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAINPDGTEKW 208 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEECTTSCEEE
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEECCCCcEEE
Confidence 4555566667776666 5556778999999998 8777777665667778888777775544 4 7788887321
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.....+..++.++.|..+|. +++.+..+..
T Consensus 209 ~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 209 NFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp EECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred EEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC
Confidence 11235666777788888874 5666655553
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=4.7e-07 Score=76.87 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCeEEEeecCCCCCC---CCC-CC---CCC---ccccCCccccc-------cceeEEEEecCCCccceec
Q 042146 34 DGRLLTSSSAEKTLLTYSLSSISNF---DST-PP---SPL---QKFTGHEQGIS-------DLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 34 ~~~~l~s~~~d~~i~iw~~~~~~~~---~~~-~~---~~~---~~~~~~~~~v~-------~~~~i~v~d~~~~~~~~~~ 96 (262)
++..+++++.|+.|..+|..+.+.. ... .. ... .......--+. ..+.|+.+|..+++.+..+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 3567888889999999998765321 110 00 000 00000000000 1347999999999887765
Q ss_pred ccCCc--------------------------------ceEEEEEeCCCCEEEeecCCC-------------------eEE
Q 042146 97 IGHTN--------------------------------YVFCINFNPQSNRIVSDTFNE-------------------TIR 125 (262)
Q Consensus 97 ~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~ 125 (262)
..... ....++++|++.+++.++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 43211 113578899999988877664 599
Q ss_pred EEECCCCeeeeeeecCC---------CCeeeEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 042146 126 IWDIKTGKCLKVLPAHS---------DPVTAIDFNRDG---TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 126 vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~ 173 (262)
.+|.++++.+..++... ....-+....+| ..++.++.+|.++++|..+
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t 346 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN 346 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence 99999999988875421 112223333466 6788888999999998754
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.80 E-value=8.9e-07 Score=75.35 Aligned_cols=161 Identities=13% Similarity=0.135 Sum_probs=107.4
Q ss_pred EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CC-----
Q 042146 28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HT----- 100 (262)
Q Consensus 28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~----- 100 (262)
.+++.|+...++.++.++.. |...... + .....+ ....|..+|..+++.+..++. |.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~--w~~~~~~------~-------~~gd~~-y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSL--WDPKWRS------Q-------AKGDNL-FLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp CEEEETTTTEEEEECCCEES--SCHHHHH------T-------TCSCCT-TTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred ceeEcCCCCEEEEeCCCCCc--cccCCCC------C-------CCCCce-eeeeEEEEEccCCceeEeeecCCccccccc
Confidence 57888888889888887752 4311000 0 000011 112588899999988876643 21
Q ss_pred --cceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCCC--------------------------------
Q 042146 101 --NYVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHSD-------------------------------- 143 (262)
Q Consensus 101 --~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------------------------- 143 (262)
.+........+|+ .++.++.+|.++++|.++++.+...+....
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1222223333565 788999999999999999988743321100
Q ss_pred -------CeeeEEEccCCCEEEEEeC---------------------------------------------CCeEEEEeC
Q 042146 144 -------PVTAIDFNRDGTMIVTSSY---------------------------------------------DGLYRILDA 171 (262)
Q Consensus 144 -------~v~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~~~d~ 171 (262)
.-..++|+|+..++++... +|.|..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0123788888777776532 378999999
Q ss_pred CC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 172 ST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 172 ~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+ ..+..++.|+.||.++.||.++|+.+..++.
T Consensus 463 ~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 463 VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp TTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 86 3567888999999999999999999988875
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=1e-06 Score=72.29 Aligned_cols=200 Identities=9% Similarity=0.094 Sum_probs=121.2
Q ss_pred ccccceeccc-CcCceEEEEE-c-cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecC
Q 042146 12 PYTLTQTLNG-HLRAVSYVKF-S-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVP 88 (262)
Q Consensus 12 ~~~~~~~~~~-h~~~v~~~~~-~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~ 88 (262)
.++..+.+.- .......+++ + |+++++++++.... =+ ......+. ..-...+.+.+.|.+
T Consensus 121 t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~-p~----------~~dg~~l~------~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 121 VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET-PL----------VNDGTNME------DVANYVNVFTAVDAD 183 (595)
T ss_dssp TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE-ES----------SCSSSSTT------CGGGEEEEEEEEETT
T ss_pred CceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc-cc----------CCCCcccc------cccccCceEEEEECC
Confidence 4554453321 2245778887 5 99999988864321 00 00000000 011122357778888
Q ss_pred CCccceecccCCcceEEEEEeCCCCEEEeecCCC--------------------------------------eEEEEECC
Q 042146 89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE--------------------------------------TIRIWDIK 130 (262)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~vwd~~ 130 (262)
+.+...++.--. .-..++++|+|+++++.+.+. .|.|.|.+
T Consensus 184 t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~ 262 (595)
T 1fwx_A 184 KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR 262 (595)
T ss_dssp TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence 777666654222 345567888888887766442 47788887
Q ss_pred C--Cee-eeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-------------------------------CC
Q 042146 131 T--GKC-LKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-------------------------------PN 175 (262)
Q Consensus 131 ~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-------------------------------~~ 175 (262)
+ ++. +..+... ....++.++|||+++++++ .+.+|.++|+.. ++
T Consensus 263 ~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~d 341 (595)
T 1fwx_A 263 KEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGR 341 (595)
T ss_dssp GGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTT
T ss_pred ccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCC
Confidence 7 444 4455432 3457899999999877665 788999999882 67
Q ss_pred ccEEEEEcCCCeEEEEecCC----------CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146 176 GKFILVGTLDNTLRLWNYST----------RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS 245 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 245 (262)
|...++.-.|+.|.+||+.+ .+.+..+..+-... |...-..+..+|||++|++
T Consensus 342 G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpG-----------------h~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 342 GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPG-----------------HLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEE-----------------EEEETTTTSTTCCSSEEEE
T ss_pred CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccc-----------------cceeccceEeCCCCCEEEE
Confidence 75555667889999999876 44555555422110 1111123356889998888
Q ss_pred ee
Q 042146 246 GA 247 (262)
Q Consensus 246 ~~ 247 (262)
+.
T Consensus 405 ~N 406 (595)
T 1fwx_A 405 LS 406 (595)
T ss_dssp EE
T ss_pred cC
Confidence 76
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.68 E-value=1.6e-07 Score=73.46 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=85.5
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCC-------C
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHS-------D 143 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~ 143 (262)
.|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||+.+++.+.++..+. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 4677888888888888755556 799999999998875 36889999999999998886431 2
Q ss_pred CeeeEEEccCCCEEEEEeC--CCeEEE--EeCCC-------------CCc-cEEEEEcCCCeEEEEecCC
Q 042146 144 PVTAIDFNRDGTMIVTSSY--DGLYRI--LDAST-------------PNG-KFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~-------------~~~-~~l~~~~~dg~i~i~d~~~ 195 (262)
....++++|||++++++.. +..+.+ +|+.+ +++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 3578999999999998874 467888 88853 112 2334556677777777775
No 243
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.65 E-value=4.4e-05 Score=56.36 Aligned_cols=189 Identities=11% Similarity=0.138 Sum_probs=115.6
Q ss_pred eecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146 17 QTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT 95 (262)
Q Consensus 17 ~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~ 95 (262)
+.+.+-.+.+..++|+|++..| ++...++.|...|. . ++.+..
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~-----------------------------------~-g~v~~~ 63 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT-----------------------------------N-GDLIRT 63 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET-----------------------------------T-CCEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC-----------------------------------C-CCEEEE
Confidence 3455666789999999986655 44666776666544 2 333333
Q ss_pred cc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee---eeeee------cCCCCeeeEEEccCCCEEEEEeCCC-
Q 042146 96 LI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVLP------AHSDPVTAIDFNRDGTMIVTSSYDG- 164 (262)
Q Consensus 96 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg- 164 (262)
+. .-......|++.+++.++++.-.++.+.++++..... +.... ..+.....++|+|.++.|+++....
T Consensus 64 i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p 143 (255)
T 3qqz_A 64 IPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP 143 (255)
T ss_dssp EECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred EecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence 32 1124577888888888777765677888888754331 22221 2345678999999887777766544
Q ss_pred -eEEEEeC--C-------------------C--------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146 165 -LYRILDA--S-------------------T--------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214 (262)
Q Consensus 165 -~i~~~d~--~-------------------~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
.|..|+- . . ..+++++....+..|.++|.. |+.+..+.-.... ..
T Consensus 144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~--- 218 (255)
T 3qqz_A 144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RG--- 218 (255)
T ss_dssp EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GG---
T ss_pred ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CC---
Confidence 3444441 0 0 456777888888888889865 6666555432110 00
Q ss_pred EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258 (262)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~ 258 (262)
+...-.....|+|.|+|++.++ + +.+.++.+.
T Consensus 219 ---------l~~~~~qpEGia~d~~G~lyIv-s--E~n~~y~f~ 250 (255)
T 3qqz_A 219 ---------LSHNIKQAEGVAMDASGNIYIV-S--EPNRFYRFT 250 (255)
T ss_dssp ---------CSSCCCSEEEEEECTTCCEEEE-E--TTTEEEEEE
T ss_pred ---------cccccCCCCeeEECCCCCEEEE-c--CCceEEEEE
Confidence 0000135689999999986666 5 666555543
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.56 E-value=9.3e-05 Score=55.21 Aligned_cols=115 Identities=8% Similarity=0.017 Sum_probs=69.0
Q ss_pred CceEEEEEccCCCeEE-EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146 24 RAVSYVKFSHDGRLLT-SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY 102 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~ 102 (262)
..+..+++++++..|+ +-...+.|..++.+. .............
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-----------------------------------~~~~~~~~~~~~~ 80 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-----------------------------------GEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS-----------------------------------CCCEEEECTTCCC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC-----------------------------------CCcEEEEECCCCC
Confidence 3467899998655444 445567777776532 1111111112245
Q ss_pred eEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC---CCeEEEEeCCC
Q 042146 103 VFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY---DGLYRILDAST 173 (262)
Q Consensus 103 v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~ 173 (262)
...++++|++..+ ++-...+.|.++++..................++++|++..|+.+.. .+.|..+++..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 6889999975554 45556789999998643322222222245689999996665555543 36788777643
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.52 E-value=8.3e-05 Score=55.48 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=50.1
Q ss_pred cceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEEeCCC
Q 042146 101 NYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~ 173 (262)
..+..++++|++..| ++-...+.|..+++........+.........++++|++..|+ +....+.|.++++..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 357799999966555 4555678999999876554333332234678999999765554 445677899888754
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=3.7e-05 Score=57.11 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=89.9
Q ss_pred ceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCCCEEEEE-eCCCeEEEEeCCC----
Q 042146 102 YVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGTMIVTS-SYDGLYRILDAST---- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~---- 173 (262)
....+.|+|++.++++.+. ++.|.++|+.+++.+..+..... ....+++. ++.|+.+ -.++.+.++|..+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998655554432 57999999999998888753222 22344544 5455444 4688999999876
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 239 (262)
++++.++++..++.|.++|..+.+.+..+....... .-..++.+.|. +
T Consensus 100 ~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~-----------------p~~~~nele~~-d 161 (266)
T 2iwa_A 100 KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH-----------------RVIRLNELEYI-N 161 (266)
T ss_dssp EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE-----------------ECCCEEEEEEE-T
T ss_pred EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc-----------------ccccceeEEEE-C
Confidence 456777777778899999999988888876421100 11135566666 5
Q ss_pred CCeEEEeeecCCCcEEEEeec
Q 042146 240 KNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 240 ~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+.+.+... .++.|.+-|+.
T Consensus 162 g~lyvn~~--~~~~V~vID~~ 180 (266)
T 2iwa_A 162 GEVWANIW--QTDCIARISAK 180 (266)
T ss_dssp TEEEEEET--TSSEEEEEETT
T ss_pred CEEEEecC--CCCeEEEEECC
Confidence 54444433 45677776654
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=9.8e-05 Score=56.75 Aligned_cols=71 Identities=7% Similarity=0.081 Sum_probs=49.4
Q ss_pred ceEEEEEeC-CCCEEEeecC-----------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eC
Q 042146 102 YVFCINFNP-QSNRIVSDTF-----------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SY 162 (262)
Q Consensus 102 ~v~~~~~~~-~~~~l~~~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 162 (262)
..+.+++.| +|++.++-.. ++.|..+|..+++....... ......++++|+++.|+.+ ..
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~ 205 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFL 205 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGG
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCC
Confidence 467899999 8887766432 36799999877664332222 2334679999999866655 56
Q ss_pred CCeEEEEeCCC
Q 042146 163 DGLYRILDAST 173 (262)
Q Consensus 163 dg~i~~~d~~~ 173 (262)
.+.|..|++..
T Consensus 206 ~~~I~~~~~~~ 216 (322)
T 2fp8_A 206 SHQIVKYWLEG 216 (322)
T ss_dssp GTEEEEEESSS
T ss_pred CCeEEEEECCC
Confidence 68899998763
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=2.2e-05 Score=57.82 Aligned_cols=100 Identities=11% Similarity=0.067 Sum_probs=74.1
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC-------
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST------- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~------- 173 (262)
-...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .. ......-..++++.| +..-.++.+.+||..+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 35788887 4566778888899999999999988877 32 233332223334444 4445789999999876
Q ss_pred ----------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 ----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
++++.|+.+..++.|.++|..+.+.+..+..
T Consensus 133 ~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 133 RYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp ECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred eCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 5677788877889999999999999888764
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=2.6e-05 Score=57.40 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-----
Q 042146 102 YVFCINFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST----- 173 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~----- 173 (262)
-...+.|+ ++.++.+.+.+| .|+++|+++++.+..+... ......-..++++.|+... .++.+.+||..+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 35788898 666666776666 8999999999998887643 3333333344455555554 688999999876
Q ss_pred ------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
++++.|+.+..++.|.++|..+.+.+..+..
T Consensus 122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 5677777777788999999999998888765
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.44 E-value=2.2e-05 Score=66.64 Aligned_cols=139 Identities=16% Similarity=0.223 Sum_probs=84.6
Q ss_pred CCeEEEecCCCeEEEeecCCCCCC-C--CCCCCCCccccC----Ccccc---------ccceeEEEEecCCCccceeccc
Q 042146 35 GRLLTSSSAEKTLLTYSLSSISNF-D--STPPSPLQKFTG----HEQGI---------SDLATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 35 ~~~l~s~~~d~~i~iw~~~~~~~~-~--~~~~~~~~~~~~----~~~~v---------~~~~~i~v~d~~~~~~~~~~~~ 98 (262)
+..++.++.|+.|..+|..+.+.. . ............ ....+ ...+.|..+|..+++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 456788888999999998765321 0 100000000000 01111 0124799999999988776542
Q ss_pred C---C----------------------------cceEEEEEeCCCCEEEeecCCC-------------------eEEEEE
Q 042146 99 H---T----------------------------NYVFCINFNPQSNRIVSDTFNE-------------------TIRIWD 128 (262)
Q Consensus 99 ~---~----------------------------~~v~~~~~~~~~~~l~~~~~dg-------------------~i~vwd 128 (262)
. . .....++++|+..+++.++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 0 0112468888888888887766 399999
Q ss_pred CCCCeeeeeeec--CC-------CCeeeEEEccCCC---EEEEEeCCCeEEEEeCCC
Q 042146 129 IKTGKCLKVLPA--HS-------DPVTAIDFNRDGT---MIVTSSYDGLYRILDAST 173 (262)
Q Consensus 129 ~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~ 173 (262)
+++++.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 333 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN 333 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence 999999888764 22 2222223333564 688888899998888654
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.43 E-value=0.00011 Score=56.55 Aligned_cols=145 Identities=13% Similarity=0.156 Sum_probs=85.5
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC---------ccce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA---------TSLK 94 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~---------~~~~ 94 (262)
....++++.++++++.++..++.|..|+..... +..|..... ....
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~ 73 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-------------------------FVDFAYASPYWNKAFCENSTDA 73 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-------------------------EEEEEESCTTCCHHHHTTCCCG
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-------------------------eEEEecccccccccccccccch
Confidence 345678899999978888888999888654311 112211100 0000
Q ss_pred ecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec-----CCCCeeeEEEcc-CCCEEEEEeC-----
Q 042146 95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA-----HSDPVTAIDFNR-DGTMIVTSSY----- 162 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~----- 162 (262)
...........+++.+ +++++++ ...+.|..+|..+++. ..+.. .......+++.+ +|++.++-..
T Consensus 74 ~~~~~~~~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 74 EKRPLCGRTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151 (322)
T ss_dssp GGHHHHCCEEEEEEETTTTEEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred hccccCCCCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence 0001123478899998 5655444 3345588888775542 22211 113468899999 8987666432
Q ss_pred ------------CCeEEEEeCCC-------------------CCccEEEEE-cCCCeEEEEecCC
Q 042146 163 ------------DGLYRILDAST-------------------PNGKFILVG-TLDNTLRLWNYST 195 (262)
Q Consensus 163 ------------dg~i~~~d~~~-------------------~~~~~l~~~-~~dg~i~i~d~~~ 195 (262)
++.|..||... ++++.|+.+ +..+.|.+|++..
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 36788888642 556644444 5567888888764
No 252
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00025 Score=56.84 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=49.2
Q ss_pred eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCC
Q 042146 103 VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAS 172 (262)
Q Consensus 103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~ 172 (262)
...++++| ++.++++-..++.|..++...+........ .......++|+|++++|+. -...+.|..++..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 45788999 777777777788999999886654222221 1234578999999995544 4567889887754
No 253
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=4.1e-05 Score=65.95 Aligned_cols=71 Identities=10% Similarity=-0.001 Sum_probs=47.5
Q ss_pred EEEEEeCCCCEEEeecCC-----CeEEEEECCCCee--eeeee-cCCCCeeeEEEccCCCEEEEEeC---CCeEEEEeCC
Q 042146 104 FCINFNPQSNRIVSDTFN-----ETIRIWDIKTGKC--LKVLP-AHSDPVTAIDFNRDGTMIVTSSY---DGLYRILDAS 172 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~ 172 (262)
..++|+||++.|+....+ ..|.++++.+++. ...+. ........+.|+|||++|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 467899999887766554 3688888876542 22222 22334678899999998877653 3467778876
Q ss_pred CC
Q 042146 173 TP 174 (262)
Q Consensus 173 ~~ 174 (262)
.+
T Consensus 304 ~~ 305 (751)
T 2xe4_A 304 KG 305 (751)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.35 E-value=0.00041 Score=52.87 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=73.2
Q ss_pred ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146 12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT 91 (262)
Q Consensus 12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~ 91 (262)
+.+.+..+... .....++|+++++++++-..++.|..||.+.. ...++.
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-------------------------~~~~~~----- 69 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------------------------QQIHAT----- 69 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------------------------EEEEEE-----
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-------------------------eEEEEe-----
Confidence 34445555432 45778999999997777767888887754320 011121
Q ss_pred cceecccCCcceEEEEEeCCCCEEEeecCC--CeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFN--ETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
.......+++.++++++++.... ..|..+|..+++....... .......++..+++..+++-..++.|..
T Consensus 70 -------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~ 142 (306)
T 2p4o_A 70 -------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL 142 (306)
T ss_dssp -------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred -------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEE
Confidence 12357889999999976665432 3577778777765433221 1223345555555544444445788888
Q ss_pred EeCC
Q 042146 169 LDAS 172 (262)
Q Consensus 169 ~d~~ 172 (262)
+|..
T Consensus 143 ~d~~ 146 (306)
T 2p4o_A 143 IDVV 146 (306)
T ss_dssp EETT
T ss_pred EeCC
Confidence 8754
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.34 E-value=0.00017 Score=52.62 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=74.1
Q ss_pred cceEEEEEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCCC----
Q 042146 101 NYVFCINFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAST---- 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~---- 173 (262)
.-...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+..... .......+.++.|+. .-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4477899986 55566666654 899999999999888764332 233333333444444 45789999999876
Q ss_pred -------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
+++..|+++..++.|.++|..+.+.+..+..
T Consensus 99 ~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 99 ARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 5677777777789999999999998888865
No 256
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00037 Score=55.92 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=47.9
Q ss_pred eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee-ecC-CCCeeeEEEccCCCEEEEE-eCCCeEEEEeCC
Q 042146 103 VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL-PAH-SDPVTAIDFNRDGTMIVTS-SYDGLYRILDAS 172 (262)
Q Consensus 103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~ 172 (262)
...++++| ++.+.++-..++.|+.+|..++.....+ ... ...-..++|+|+++.|+.+ ...+.|..++..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 45688999 6776667667889999998877652222 211 1223469999999955555 456889997754
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.32 E-value=0.00021 Score=60.73 Aligned_cols=162 Identities=14% Similarity=0.184 Sum_probs=104.1
Q ss_pred EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CC-----
Q 042146 28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HT----- 100 (262)
Q Consensus 28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~----- 100 (262)
.+++.|+...++.++.++.. |...... + .....+ ....|..+|..+++.+..++. |.
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~--w~~~~~~------~-------~~gd~l-~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSP--WNREVRS------P-------GGGDNL-YLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297 (668)
T ss_dssp CEEEETTTTEEEEECCCEES--SCHHHHS------T-------TCCCCT-TTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ceEEcCCCCEEEEeCCCCCc--cccCCCC------C-------CCCCce-eeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence 46788888888888777642 4211000 0 000000 112578888888888776643 21
Q ss_pred --cceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC------------CCe------------------
Q 042146 101 --NYVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS------------DPV------------------ 145 (262)
Q Consensus 101 --~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------~~v------------------ 145 (262)
.+.....+..+++ .++.++.+|.++++|.++++.+...+... .++
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2233333334665 68899999999999999998874432211 000
Q ss_pred ------eeEEEccCCCEEEEEe------------------------------------CCCeEEEEeCCC----------
Q 042146 146 ------TAIDFNRDGTMIVTSS------------------------------------YDGLYRILDAST---------- 173 (262)
Q Consensus 146 ------~~~~~~~~~~~l~~~~------------------------------------~dg~i~~~d~~~---------- 173 (262)
..++++|+...++... .+|.|..||+.+
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 1267777766655421 247899999876
Q ss_pred ---------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
..+.++++++.||.++.||.++|+.+..++..
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 35678888999999999999999999888753
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.31 E-value=0.00052 Score=52.30 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=65.7
Q ss_pred EEEEEeCCCCEEEeecCCCeEEEEECCCCee-eeeee---------cCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCC
Q 042146 104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVLP---------AHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAS 172 (262)
Q Consensus 104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~ 172 (262)
..++..+++..+++-..++.|.++|..+++. +.... ..-.....+ +|+++.|+.+ ...+.|..|++.
T Consensus 120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 3444455555555555688999999875421 11100 111234455 7888765554 467889999875
Q ss_pred C----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccc
Q 042146 173 T----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDP 230 (262)
Q Consensus 173 ~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (262)
. ++++++++....+.|.++|.. ++........ ..-..
T Consensus 198 ~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------------------~~~~~ 256 (306)
T 2p4o_A 198 STDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------------------QGVIG 256 (306)
T ss_dssp TTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------------------GTCTT
T ss_pred CCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------------------cccCC
Confidence 2 344444444444556666543 3332111100 02245
Q ss_pred eEEEEEc---CCCCeEEEee
Q 042146 231 VISVASH---PAKNIIASGA 247 (262)
Q Consensus 231 v~~~~~~---p~~~~l~~~~ 247 (262)
.++++|. |+++.|+.++
T Consensus 257 p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 257 STAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEEEECCSTTTTTEEEEEE
T ss_pred ceEEEEecccCCCCEEEEEC
Confidence 7899998 8877666655
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=0.00017 Score=60.00 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=87.2
Q ss_pred eEEEEecCCCccceeccc--C--------CcceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC-----
Q 042146 81 TIRLWDVPTATSLKTLIG--H--------TNYVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS----- 142 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----- 142 (262)
.|..+|..+++.+..++. | ..++. +...++|+ .++.++.+|.+.++|.++++.+...+...
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 588899999988776542 1 12221 22234674 57788999999999999999877654321
Q ss_pred --------CCe--------------------------eeEEEccCCCEEEEEe---------------------------
Q 042146 143 --------DPV--------------------------TAIDFNRDGTMIVTSS--------------------------- 161 (262)
Q Consensus 143 --------~~v--------------------------~~~~~~~~~~~l~~~~--------------------------- 161 (262)
.++ ..++++|+..++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 2467888777766653
Q ss_pred ----------CCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 162 ----------YDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 162 ----------~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+|.|..||+.+ ..+..++.++.||.|+.+|.++|+.+..++.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 347888888776 2356777789999999999999999988875
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.0013 Score=51.96 Aligned_cols=72 Identities=8% Similarity=-0.081 Sum_probs=46.3
Q ss_pred ceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CC-CeEEEEeCCC
Q 042146 102 YVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YD-GLYRILDAST 173 (262)
Q Consensus 102 ~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~ 173 (262)
....+++++.+ .++++-...+.|.+.++........+.........+++.|.+..|+.+. .. +.|..+++..
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 44678888754 4455556677899988865433333333335678999998666555544 44 6788887654
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.00023 Score=57.10 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=82.7
Q ss_pred ceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC----eEEEEeCCC--
Q 042146 102 YVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG----LYRILDAST-- 173 (262)
Q Consensus 102 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~-- 173 (262)
....++++| ++..|+++...+.|+.+|+..++..... ........++++++++.|+++.. ++ .+..++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889998 4555666555588999999876644433 34556789999999996666654 22 233333211
Q ss_pred ------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146 174 ------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV 234 (262)
Q Consensus 174 ------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 234 (262)
+ ++.++++-..++.|+.++...+......... .......+
T Consensus 217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------------------~~~~P~gi 275 (430)
T 3tc9_A 217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------------------DSGWEFHI 275 (430)
T ss_dssp CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------------------SSSCCEEE
T ss_pred eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------------------CCCcceeE
Confidence 3 4444444445566666666544332111110 12346789
Q ss_pred EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 235 ASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 235 ~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
+|+|++++|+.+.. ..+.|..++.+
T Consensus 276 a~~pdG~~lyv~d~-~~~~I~~~~~d 300 (430)
T 3tc9_A 276 QFHPSGNYAYIVVV-NQHYILRSDYD 300 (430)
T ss_dssp EECTTSSEEEEEET-TTTEEEEEEEE
T ss_pred EEcCCCCEEEEEEC-CCCEEEEEeCC
Confidence 99999995555542 57788888765
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.15 E-value=0.00018 Score=59.98 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=86.9
Q ss_pred eeEEEEecCCCccceeccc--CC--------cceEEEEEe-CCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC---
Q 042146 80 ATIRLWDVPTATSLKTLIG--HT--------NYVFCINFN-PQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS--- 142 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--- 142 (262)
..|..+|..+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|.++++.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 4688999999998877642 21 1222 2222 4664 78889999999999999998887654321
Q ss_pred ----------CCe--------------------------------eeEEEccCCCEEEEEe-------------------
Q 042146 143 ----------DPV--------------------------------TAIDFNRDGTMIVTSS------------------- 161 (262)
Q Consensus 143 ----------~~v--------------------------------~~~~~~~~~~~l~~~~------------------- 161 (262)
.++ ..++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 1346677555555432
Q ss_pred --------------CCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 162 --------------YDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 162 --------------~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+|.|.-||+.+ ..+..++.|+.||.++.||.++|+.+..++.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 257888899876 2356788899999999999999999998875
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.15 E-value=0.00098 Score=55.72 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=84.2
Q ss_pred eEEEEecCCCccceecccCC----------cceEEEEEe-CCC---CEEEeecCCCeEEEEECCCCeeeeeeecCC----
Q 042146 81 TIRLWDVPTATSLKTLIGHT----------NYVFCINFN-PQS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHS---- 142 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---- 142 (262)
.|..+|..+++.+..++... .++. +... .+| +.++.++.+|.++++|.++++.+.......
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 57888888888876654321 1222 2222 467 467788999999999999999887654211
Q ss_pred ---------CCe--------------------------eeEEEccCCCEEEEEe--------------------------
Q 042146 143 ---------DPV--------------------------TAIDFNRDGTMIVTSS-------------------------- 161 (262)
Q Consensus 143 ---------~~v--------------------------~~~~~~~~~~~l~~~~-------------------------- 161 (262)
.++ ..++++|+..++++..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence 111 2456677665554431
Q ss_pred -------------CCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 162 -------------YDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 162 -------------~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
.+|.+.-||+.+ ..+..++.++.||.++.||.++|+.+..++.
T Consensus 438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 346788888766 2456777889999999999999999988864
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.14 E-value=0.0015 Score=50.83 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=48.9
Q ss_pred cceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 042146 101 NYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~ 173 (262)
.....++|++....| .+-...+.|..+++........+.........+++.+.+ +++++-...+.|.+.++..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 447899999855554 455567899999987665433333333445789998754 4455555677888888764
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00039 Score=58.98 Aligned_cols=93 Identities=11% Similarity=0.157 Sum_probs=57.2
Q ss_pred eEEEEecCCCccce--ecc-cCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCCC
Q 042146 81 TIRLWDVPTATSLK--TLI-GHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGT 155 (262)
Q Consensus 81 ~i~v~d~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 155 (262)
.+.+||..+++... .+. .+.....++++.+++++++.|+. +..+.+||+.+.+-...-..+.. .-.+++..++++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 46677776654322 221 12223345677789999999884 45899999987753322111111 123455667899
Q ss_pred EEEEEe-CC-----CeEEEEeCCC
Q 042146 156 MIVTSS-YD-----GLYRILDAST 173 (262)
Q Consensus 156 ~l~~~~-~d-----g~i~~~d~~~ 173 (262)
+++.|+ .+ ..+.+||..+
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTT
T ss_pred EEEEeCcccCCcccccceEeCCCC
Confidence 999988 44 4688888765
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.11 E-value=0.0017 Score=50.48 Aligned_cols=73 Identities=8% Similarity=-0.089 Sum_probs=47.3
Q ss_pred cceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCC-CeEEEEeCCC
Q 042146 101 NYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYD-GLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~~~d~~~ 173 (262)
.....+++++. +++.++-...+.|.+.++........+...-.....++++|.+..|+.+ ... +.|..+++..
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 34568899985 4455566667899999987543333333333456899999965554444 444 7888888654
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.09 E-value=0.0021 Score=50.68 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=56.4
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EEEE
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MIVT 159 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 159 (262)
|+.+++.......... .......++|++.+.. +++-...+.|..+++........+.........+++.+.+. ++++
T Consensus 98 I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~ 176 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176 (386)
T ss_dssp EEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred ceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEE
Confidence 5555655443332222 3345789999985554 45556678999999886654443333333457889987544 4455
Q ss_pred EeCCCeEEEEeCCC
Q 042146 160 SSYDGLYRILDAST 173 (262)
Q Consensus 160 ~~~dg~i~~~d~~~ 173 (262)
-...+.|.+.++..
T Consensus 177 d~~~~~I~~~~~dg 190 (386)
T 3v65_B 177 DSGTSRIEVANLDG 190 (386)
T ss_dssp ETTTTEEEECBTTS
T ss_pred cCCCCeEEEEeCCC
Confidence 55677888888654
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.03 E-value=0.00012 Score=63.02 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=47.2
Q ss_pred ceEEEEEe-CCCCEEEeec-----CCCeEEEEECCCC-eeeee-eecCCCCeeeEEEccCCCEEEEEeCC-----CeEEE
Q 042146 102 YVFCINFN-PQSNRIVSDT-----FNETIRIWDIKTG-KCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRI 168 (262)
Q Consensus 102 ~v~~~~~~-~~~~~l~~~~-----~dg~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~ 168 (262)
.+...+|+ |||++|+-+. ....|+++|+.++ +.+.. +. .....++|+||++.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 9999887432 2235999999988 63221 21 123578999999877776654 25777
Q ss_pred EeCCC
Q 042146 169 LDAST 173 (262)
Q Consensus 169 ~d~~~ 173 (262)
+++.+
T Consensus 252 ~~lgt 256 (751)
T 2xe4_A 252 HVMGK 256 (751)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 77654
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.99 E-value=0.0064 Score=52.79 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=83.4
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-------CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-------HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
...|.++...+++.+.+.. .+ -|.+||..+++....... ....|.++...++|. |..|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 3569999999888766544 34 488899877654332211 235689999988876 5567766667777643
Q ss_pred C-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146 173 T-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH 227 (262)
Q Consensus 173 ~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
. .....|-.|+.++-|..||..+++.............. -.
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~--------------l~ 404 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARG--------------IG 404 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------C--------------CS
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccC--------------CC
Confidence 2 11234556777767888887765543322110000000 02
Q ss_pred ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
...|.++...+++..|..|+ .++-|..|+.+
T Consensus 405 ~~~v~~i~~d~~g~~lWigt--~~~Gl~~~d~~ 435 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGT--HAGGLSILHRN 435 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEE--TTTEEEEEETT
T ss_pred CccEEEEEEcCCCCEEEEEe--CcCceeEEeCC
Confidence 34677777777777344444 44556666643
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.99 E-value=0.0064 Score=52.78 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=83.9
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC--CCC------CCCCCcccc-CCcccc--ccc-eeEEEEecCCC
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF--DST------PPSPLQKFT-GHEQGI--SDL-ATIRLWDVPTA 90 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~------~~~~~~~~~-~~~~~v--~~~-~~i~v~d~~~~ 90 (262)
...|.++...++|. |..|+.++-|..++....... ... ....+..+. .....+ ... +-|..++..++
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC
Confidence 35699999988887 555677777888876432110 000 011111111 111111 111 15677776655
Q ss_pred ccceecc--------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee----cCCCCeeeEEEccCCCEEE
Q 042146 91 TSLKTLI--------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP----AHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 91 ~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~ 158 (262)
+...-.. -....|.++...++++.|..|+.++-|.+||.++++...... .....|.++...+++.+.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi 467 (795)
T 4a2l_A 388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL 467 (795)
T ss_dssp CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence 4322211 123568999999888856666766779999988776433221 1345789998888777554
Q ss_pred EEeCCCeEEEEeCC
Q 042146 159 TSSYDGLYRILDAS 172 (262)
Q Consensus 159 ~~~~dg~i~~~d~~ 172 (262)
. +.+ -+..||..
T Consensus 468 g-t~~-Gl~~~~~~ 479 (795)
T 4a2l_A 468 G-TLS-ALVRFNPE 479 (795)
T ss_dssp E-ESS-CEEEEETT
T ss_pred E-ecC-ceeEEeCC
Confidence 4 444 46667654
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.98 E-value=0.0013 Score=54.79 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=78.8
Q ss_pred CCeEEEecCCCeEEEeecCCCCCC-CCCCCC-----CC---ccccCCcccccc-------ceeEEEEecCCCccceeccc
Q 042146 35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPS-----PL---QKFTGHEQGISD-------LATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~-----~~---~~~~~~~~~v~~-------~~~i~v~d~~~~~~~~~~~~ 98 (262)
+..++.++.|+.|..+|..+.+.. ...... .. .......--+.. .+.|..+|..+++.+.++..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 456778888999999988664321 000000 00 000010000111 34789999999988765542
Q ss_pred CCcc--------------------------------------eEEEEEeCCCCEEEeecCC----------------CeE
Q 042146 99 HTNY--------------------------------------VFCINFNPQSNRIVSDTFN----------------ETI 124 (262)
Q Consensus 99 ~~~~--------------------------------------v~~~~~~~~~~~l~~~~~d----------------g~i 124 (262)
.... ...+++.++...++.+..+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 2110 0235677766777665532 369
Q ss_pred EEEECCCCeeeeeeecCC----------CCeeeEEEccCCC---EEEEEeCCCeEEEEeCCC
Q 042146 125 RIWDIKTGKCLKVLPAHS----------DPVTAIDFNRDGT---MIVTSSYDGLYRILDAST 173 (262)
Q Consensus 125 ~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~ 173 (262)
..+|.++++.+..++... .++. +...++|+ .++.++.+|.+.++|..+
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 335 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN 335 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC
Confidence 999999999988875321 1211 22223663 567788888888888654
No 272
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.97 E-value=0.0018 Score=49.37 Aligned_cols=152 Identities=8% Similarity=0.108 Sum_probs=83.7
Q ss_pred cceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeee-eec----CC--CCeeeEEE---ccCCCEEEEEe--------
Q 042146 101 NYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKV-LPA----HS--DPVTAIDF---NRDGTMIVTSS-------- 161 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~-------- 161 (262)
..-.+++|++....++.++ ..+.|..||...+..... +.. .. ..+..|.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3445789998555555554 789999999975543322 221 11 13578999 68877777544
Q ss_pred -----CCCeEEEEeCC---C------------CCc-------c----EEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146 162 -----YDGLYRILDAS---T------------PNG-------K----FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY 210 (262)
Q Consensus 162 -----~dg~i~~~d~~---~------------~~~-------~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 210 (262)
.+..+..||+. + .++ . .=++-..+|.++|=+......+..+........
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26789999988 3 000 1 011223445555533322011222222111111
Q ss_pred EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.. ....+.. ......+.|+++|++..|++.. ..|.|.-+|+.
T Consensus 173 ~~--~~~~~~~----~~~~G~nGIv~~pdg~~Liv~~--~~g~L~~fD~~ 214 (334)
T 2p9w_A 173 TF--AWESGNG----GQRPGYSGITFDPHSNKLIAFG--GPRALTAFDVS 214 (334)
T ss_dssp EE--EECCCCS----SSCCSCSEEEEETTTTEEEEES--SSSSEEEEECS
T ss_pred ee--eecCCCc----ccccCcceEEEeCCCCEEEEEc--CCCeEEEEcCC
Confidence 00 0000000 0223467999999999999987 68888888864
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.95 E-value=0.0033 Score=48.10 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCC----CeeeeeeecCCCCeeeEEEccCCC-
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKT----GKCLKVLPAHSDPVTAIDFNRDGT- 155 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~- 155 (262)
|+..|+...+....+. .......++|++.+.. +++-...+.|..+++.. ......+...-.....+++.+.+.
T Consensus 12 I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ 90 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN 90 (316)
T ss_dssp EEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred EEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCe
Confidence 4444554444333222 2345789999986554 45555678999999875 222222322223457899987544
Q ss_pred EEEEEeCCCeEEEEeCCC
Q 042146 156 MIVTSSYDGLYRILDAST 173 (262)
Q Consensus 156 ~l~~~~~dg~i~~~d~~~ 173 (262)
++++-...+.|.++++..
T Consensus 91 ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 91 IYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp EEEEETTTTEEEEEETTS
T ss_pred EEEEECCCCEEEEEeCCC
Confidence 445556678888888754
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.95 E-value=0.0018 Score=54.17 Aligned_cols=93 Identities=19% Similarity=0.181 Sum_probs=61.0
Q ss_pred eeEEEEecCCCccceecccCCcc-------------------------------------e-EEEEEeCCCCEEEeecCC
Q 042146 80 ATIRLWDVPTATSLKTLIGHTNY-------------------------------------V-FCINFNPQSNRIVSDTFN 121 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d 121 (262)
+.|+.+|.++++.+..+...... + ..+++.+...+++.+..+
T Consensus 182 g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~ 261 (599)
T 1w6s_A 182 GYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGN 261 (599)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCC
Confidence 47899999999887665422111 0 135677777788777655
Q ss_pred ----------------CeEEEEECCCCeeeeeeecCCC----------CeeeEEEc-cCC---CEEEEEeCCCeEEEEeC
Q 042146 122 ----------------ETIRIWDIKTGKCLKVLPAHSD----------PVTAIDFN-RDG---TMIVTSSYDGLYRILDA 171 (262)
Q Consensus 122 ----------------g~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~dg~i~~~d~ 171 (262)
+.|..+|.++++.+..++.... ++. +... .+| ..++.++.+|.+.++|.
T Consensus 262 ~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 262 PAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp CSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred CccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEEC
Confidence 3899999999999887764321 111 2221 356 45667778888888887
Q ss_pred CC
Q 042146 172 ST 173 (262)
Q Consensus 172 ~~ 173 (262)
.+
T Consensus 341 ~t 342 (599)
T 1w6s_A 341 TD 342 (599)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0024 Score=51.20 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=80.0
Q ss_pred ceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCC--
Q 042146 102 YVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAS-- 172 (262)
Q Consensus 102 ~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~-- 172 (262)
....++++|+ ...|+.+...+.|+.+|+.+++..... ........++++++++ |+.+...+ .+..++..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 444544443489999999877755443 3445679999999999 44444321 12222211
Q ss_pred -----------C-------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146 173 -----------T-------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS 233 (262)
Q Consensus 173 -----------~-------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 233 (262)
. + ++.++++-..++.|+.+|..++.....+.... ....-..
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------------------~~~~~~~ 277 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD--------------------TKGSNFH 277 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS--------------------CCSSCEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC--------------------CCCCccc
Confidence 1 3 44444455556677777776665522222110 1112246
Q ss_pred EEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 234 VASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
++|+|+++.|+.+.. ..+.|+.++++
T Consensus 278 ia~dpdG~~LYvad~-~~~~I~~~~~d 303 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYN-GKHCIYRVDYN 303 (433)
T ss_dssp EEECTTSSEEEEEET-TTTEEEEEEBC
T ss_pred EEEeCCCCEEEEEeC-CCCEEEEEeCC
Confidence 899999985555542 46778877654
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.84 E-value=0.0056 Score=47.19 Aligned_cols=154 Identities=10% Similarity=0.225 Sum_probs=89.4
Q ss_pred EEEEecCCCccceecccCCcceEEEEEeCC----CC---EEE-eecC--CCeEEEEEC--CCCeeeeeeec------CC-
Q 042146 82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQ----SN---RIV-SDTF--NETIRIWDI--KTGKCLKVLPA------HS- 142 (262)
Q Consensus 82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~-~~~~--dg~i~vwd~--~~~~~~~~~~~------~~- 142 (262)
+.+||+ +++.+..+.. +.++.+.+-|. ++ +++ +.-. +++|.+|++ .++. +..+.. ..
T Consensus 52 L~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~ 127 (355)
T 3amr_A 52 LVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAI 127 (355)
T ss_dssp EEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCC
T ss_pred EEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCC
Confidence 344455 5666666543 44566655552 22 223 3333 578999966 3333 444421 11
Q ss_pred CCeeeEEE--ccC-CC-EEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEEEEe
Q 042146 143 DPVTAIDF--NRD-GT-MIVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 143 ~~v~~~~~--~~~-~~-~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~i~d 192 (262)
..+..+++ +|. +. ++++...+|.+..|++.. +....|+.+-++..|..|+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence 45667777 674 43 688888899999988732 4456777777776666666
Q ss_pred cC-----CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE--cCCCC-eEEEeeecCCCcEEEEeec
Q 042146 193 YS-----TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS--HPAKN-IIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 193 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~-~l~~~~~d~d~~i~iw~~~ 260 (262)
.+ +++.+..+.... ....+..|+. .++++ +|++++. .+.+..+|+.+
T Consensus 208 a~p~~~~~~~~v~~~~~g~--------------------l~aDvEGLai~~~~~g~gyLivSsQ-G~~s~~Vydr~ 262 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRH--------------------LTRDIEGLTIYYAADGKGYLMASSQ-GNSSYAIYDRQ 262 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSS--------------------BCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESS
T ss_pred CCcCCCCCceEEEEecCCc--------------------cccCcceEEEEecCCCCEEEEEEcC-CCCEEEEEECC
Confidence 44 233443332100 2235777777 45555 6666664 46788898874
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.82 E-value=0.013 Score=50.71 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=80.6
Q ss_pred cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCC-------CCCCCCCC-ccccCCcccccc----ceeEEEEecCC
Q 042146 23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNF-------DSTPPSPL-QKFTGHEQGISD----LATIRLWDVPT 89 (262)
Q Consensus 23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~-~~~~~~~~~v~~----~~~i~v~d~~~ 89 (262)
...+..++|.+. +.++++-...+.|+.+++...... ......+. ..+......++. ...|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 456778999885 445556566788988887652110 00000000 000000001110 11566666643
Q ss_pred CccceecccCCcceEEEEEeCCCCEEEeec-C-CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeE
Q 042146 90 ATSLKTLIGHTNYVFCINFNPQSNRIVSDT-F-NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLY 166 (262)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 166 (262)
......+.........|+++|...+|+... . .+.|.+.++........+...-.....|++++.+..|+.+. ..+.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 332222222334578999999766555443 2 36899998865443333333335678999998666665554 55678
Q ss_pred EEEeCCC
Q 042146 167 RILDAST 173 (262)
Q Consensus 167 ~~~d~~~ 173 (262)
..+++..
T Consensus 583 ~~~d~dG 589 (791)
T 3m0c_C 583 SSIDVNG 589 (791)
T ss_dssp EEEETTS
T ss_pred EEEecCC
Confidence 8888765
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.82 E-value=0.0059 Score=46.73 Aligned_cols=120 Identities=10% Similarity=0.023 Sum_probs=68.2
Q ss_pred cCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146 23 LRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN 101 (262)
Q Consensus 23 ~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~ 101 (262)
...+..++|++++. .+++-...+.|..+++..... .......+.....
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-------------------------------~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-------------------------------VSSYDTVISRDIQ 77 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------------------CEEEECSSCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-------------------------------CcccEEEEeCCCC
Confidence 44567899998654 444555567777776543100 0000011111123
Q ss_pred ceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-C-CeEEEEeCCC
Q 042146 102 YVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-D-GLYRILDAST 173 (262)
Q Consensus 102 ~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~~d~~~ 173 (262)
....+++++.+. +.++-...+.|.+.++........+.........++++|.+..|+.+.. . +.|..+++..
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 456888987544 4455566789999998754433333333356789999986665555543 2 6788877653
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.81 E-value=0.0045 Score=45.65 Aligned_cols=77 Identities=16% Similarity=0.302 Sum_probs=56.1
Q ss_pred ecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 95 TLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+.+-...+..++++|++..| ++...++.|...|+. ++.+..+.. .......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 344555679999999976655 457778899999988 877777642 22467888998888776666567778777654
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.013 Score=50.67 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=79.8
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-----CCCCCcccc-CCcccc--cc-ceeEEEEecCCCccc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----PPSPLQKFT-GHEQGI--SD-LATIRLWDVPTATSL 93 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~~~~-~~~~~v--~~-~~~i~v~d~~~~~~~ 93 (262)
...|.++...+++. |..|+.++-|..|+.......... ....+..+. .....+ .. ..-|..++..+++..
T Consensus 362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE
T ss_pred CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE
Confidence 35689998888876 455665666888886542211110 011111111 111111 11 125667776555432
Q ss_pred eec--ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-----CCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 94 KTL--IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-----SDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 94 ~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
... ......|.++...+++.+.+. +. +-|..+|..+++........ ...|.++...++|.+.+ |+.++-+
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl 517 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGV 517 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCE
T ss_pred EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCE
Confidence 211 113467899988887775554 44 45888998876543332211 35789998888887544 4443336
Q ss_pred EEEeCC
Q 042146 167 RILDAS 172 (262)
Q Consensus 167 ~~~d~~ 172 (262)
..||..
T Consensus 518 ~~~~~~ 523 (781)
T 3v9f_A 518 GIYTPD 523 (781)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 667654
No 281
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.81 E-value=0.0051 Score=48.54 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe------------eeeeeec------CCCCeeeEEEccC---CCEEEEE
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK------------CLKVLPA------HSDPVTAIDFNRD---GTMIVTS 160 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~------~~~~v~~~~~~~~---~~~l~~~ 160 (262)
.|..+..+|+|++||..+ +..|.|-.+..+. ....+.- ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 567799999999999876 4588888876321 0112221 2567999999994 4466666
Q ss_pred eCCCeEEEEeCCC
Q 042146 161 SYDGLYRILDAST 173 (262)
Q Consensus 161 ~~dg~i~~~d~~~ 173 (262)
..|+.|++||+..
T Consensus 146 tsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 146 KEDDTITMFDILN 158 (452)
T ss_dssp ETTSCEEEEETTC
T ss_pred ecCCEEEEEEccc
Confidence 6666666666653
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.77 E-value=0.001 Score=56.38 Aligned_cols=30 Identities=0% Similarity=-0.013 Sum_probs=22.3
Q ss_pred EEEEeCCCCEEEeec-CC-----CeEEEEECCCCee
Q 042146 105 CINFNPQSNRIVSDT-FN-----ETIRIWDIKTGKC 134 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~-~d-----g~i~vwd~~~~~~ 134 (262)
+++..+++++++.|+ .+ ..+.+||+.+++-
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 445567899988888 34 4699999987653
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.76 E-value=0.0092 Score=47.31 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=57.6
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCC----eeeeeeecCCCCeeeEEEccC-C
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTG----KCLKVLPAHSDPVTAIDFNRD-G 154 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~ 154 (262)
.|+..++......... .....+..++|++.+..| .+-...+.|..+++... .....+.........+++.+. +
T Consensus 93 ~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp EEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred eeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 6777777655443333 344568899999865555 45456788999998652 222333323456788999884 4
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 042146 155 TMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 155 ~~l~~~~~dg~i~~~d~~~ 173 (262)
+++++-...+.|.+.++..
T Consensus 172 ~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp EEEEEETTTTEEEEECTTT
T ss_pred ceEEEECCCCeEEEEeCCC
Confidence 4555555678888888765
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.76 E-value=0.0074 Score=46.22 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=47.1
Q ss_pred cceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeee-eeeecCCCCeeeEEEccC-CCEEEEEeCCCeEEEEeCCC
Q 042146 101 NYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFNRD-GTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~ 173 (262)
.....++|++. +.++.+-...+.|..+++..+... ..+...-.....+++.+. ++++++-...+.|.++++..
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 34668899985 445556566789999998765321 222222334578888874 44555555677888888764
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=0.0017 Score=55.43 Aligned_cols=70 Identities=13% Similarity=-0.012 Sum_probs=42.7
Q ss_pred eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CC-CeEEEEeCC
Q 042146 103 VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YD-GLYRILDAS 172 (262)
Q Consensus 103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~ 172 (262)
...|++.+ .++++++-...+.|.++++........+.........++++|.+..|+.+. .. +.|..+++.
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 44677875 445555556678899999875543333332234567889998655554443 22 677777654
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.73 E-value=0.011 Score=46.96 Aligned_cols=73 Identities=12% Similarity=-0.027 Sum_probs=49.3
Q ss_pred cceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-C-CCeEEEEeCCC
Q 042146 101 NYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-Y-DGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~ 173 (262)
.....+++++ .+++.++-...+.|.+.++........+.........|++.|.+..|+.+. . .+.|...++..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 4577899998 455556666778999999876544444433344578999999666555554 2 36787777654
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.71 E-value=0.0045 Score=51.65 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=45.0
Q ss_pred EEEEeCCCCEEEeecC--------------------C----CeEEEEECCCCeeeeeeec--CC--------CCeeeEEE
Q 042146 105 CINFNPQSNRIVSDTF--------------------N----ETIRIWDIKTGKCLKVLPA--HS--------DPVTAIDF 150 (262)
Q Consensus 105 ~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~ 150 (262)
.++++|...+++.+.. | +.|..+|.++++.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 3567777777776552 2 6899999999999888753 21 1111 121
Q ss_pred c-cCCC---EEEEEeCCCeEEEEeCCC
Q 042146 151 N-RDGT---MIVTSSYDGLYRILDAST 173 (262)
Q Consensus 151 ~-~~~~---~l~~~~~dg~i~~~d~~~ 173 (262)
. .+|+ .++.++.+|.++++|..+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 3563 677888889998888654
No 288
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.66 E-value=0.011 Score=45.11 Aligned_cols=129 Identities=12% Similarity=0.180 Sum_probs=72.2
Q ss_pred cCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEee
Q 042146 42 SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118 (262)
Q Consensus 42 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 118 (262)
+.+..|.|-|+.+.......+......+-.....+.+ -..+.++|+++.+.++...- ...|.-=+|-.+ +.|+-.
T Consensus 46 ~~~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lV 123 (365)
T 2xzh_A 46 GEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALV 123 (365)
T ss_dssp TTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEE
T ss_pred CCCCEEEEEECCCCCCccccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEE
Confidence 3445788888876433211111111111111122222 23899999999988877653 356666666644 344433
Q ss_pred cCCCeEEEEECCC-CeeeeeeecCC----CCeeeEEEccCCCEEEEEeC-------CCeEEEEeCCC
Q 042146 119 TFNETIRIWDIKT-GKCLKVLPAHS----DPVTAIDFNRDGTMIVTSSY-------DGLYRILDAST 173 (262)
Q Consensus 119 ~~dg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~ 173 (262)
+ +..|+-|+++. ..+...+..|. ..|..-..+++.++++..+- .|.+.+|....
T Consensus 124 T-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 124 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp E-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred c-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 3 45899999874 35555555443 35666666777776555432 25667777655
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.63 E-value=0.012 Score=45.03 Aligned_cols=72 Identities=7% Similarity=-0.068 Sum_probs=46.6
Q ss_pred ceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CCCeEEEEeCCC
Q 042146 102 YVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YDGLYRILDAST 173 (262)
Q Consensus 102 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~ 173 (262)
....+++.+ .++++++-...+.|.++++..................+++.|.+..|+.+. ..+.|..+++..
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 456788987 445555656678999999875433222323345568999998655555555 357788877653
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=0.019 Score=46.67 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=46.0
Q ss_pred eEEEEEeC-CCCEEEeecCCCeEEEEECC-------CCee-----------eee-ee-cCCCCeeeEEEccCCCEEEEE-
Q 042146 103 VFCINFNP-QSNRIVSDTFNETIRIWDIK-------TGKC-----------LKV-LP-AHSDPVTAIDFNRDGTMIVTS- 160 (262)
Q Consensus 103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~l~~~- 160 (262)
...++++| ++.++++-..++.|..+|+. ++.. ... +. ........|+|+|+++.|+.+
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 34678899 55666677788899999987 4443 111 11 122345789999999965555
Q ss_pred eCCCeEEEEeC
Q 042146 161 SYDGLYRILDA 171 (262)
Q Consensus 161 ~~dg~i~~~d~ 171 (262)
.....|+.++.
T Consensus 329 ~~~h~I~kid~ 339 (496)
T 3kya_A 329 INNHYFMRSDY 339 (496)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 46678888654
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.016 Score=47.07 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=42.5
Q ss_pred ceEEEEEeC-CCCEEE-eecCCCeEEEEECCCCeeeeeeecC---CCCeeeEEE-------ccCCCEEEEEeCCC
Q 042146 102 YVFCINFNP-QSNRIV-SDTFNETIRIWDIKTGKCLKVLPAH---SDPVTAIDF-------NRDGTMIVTSSYDG 164 (262)
Q Consensus 102 ~v~~~~~~~-~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg 164 (262)
....|+|+| +...|+ +-...+.|++.|+.++......... ......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 467899998 344444 4444467999999887765444322 224789999 99999776666543
No 292
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.032 Score=48.30 Aligned_cols=147 Identities=9% Similarity=0.010 Sum_probs=80.8
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC-----------CCCCCCccccCCc-ccc--cc-ceeEEEEec
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS-----------TPPSPLQKFTGHE-QGI--SD-LATIRLWDV 87 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~-~~v--~~-~~~i~v~d~ 87 (262)
...|.++...++|. |-.|+.++-|..++......... .....+..+.... ..+ .. ..-|..++.
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 390 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence 45699999888887 55666677788887654221100 0011111111111 111 11 113666766
Q ss_pred CCCccceec---ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeC
Q 042146 88 PTATSLKTL---IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY 162 (262)
Q Consensus 88 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~ 162 (262)
.++...... ......|.++...+++.+.+ |+.++-|..+|.++++...... .....|.++...+++. |..|+.
T Consensus 391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~ 468 (781)
T 3v9f_A 391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH 468 (781)
T ss_dssp TEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET
T ss_pred CCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC
Confidence 543221111 11335789998887777555 5656678889987775433221 1345788888887776 444555
Q ss_pred CCeEEEEeCCC
Q 042146 163 DGLYRILDAST 173 (262)
Q Consensus 163 dg~i~~~d~~~ 173 (262)
+-+..||...
T Consensus 469 -~Gl~~~~~~~ 478 (781)
T 3v9f_A 469 -AGVFVIDLAS 478 (781)
T ss_dssp -TEEEEEESSS
T ss_pred -CceEEEeCCC
Confidence 4577777543
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.40 E-value=0.016 Score=44.74 Aligned_cols=120 Identities=14% Similarity=0.324 Sum_probs=73.3
Q ss_pred CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC----CC---EEEEEe-C--CCeEEEEeCCC-------
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD----GT---MIVTSS-Y--DGLYRILDAST------- 173 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--dg~i~~~d~~~------- 173 (262)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++.. . +++|.+|++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 7888888753 56777777763 22 233333 3 57899996531
Q ss_pred -----------------------C-Ccc-EEEEEcCCCeEEEEecC-------CCceeeEEeccCCceeEEEEEEecCCC
Q 042146 174 -----------------------P-NGK-FILVGTLDNTLRLWNYS-------TRKILKTYSGYTNSKYCISSTFSVTNG 221 (262)
Q Consensus 174 -----------------------~-~~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
+ .+. ++++...+|.+..|++. +.+.++++.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~------------------ 177 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK------------------ 177 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE------------------
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec------------------
Confidence 1 121 45555555666666552 223444443
Q ss_pred eeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 222 KYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 222 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
....+..|...+....|+.+- ++. -||.+.
T Consensus 178 -----lgsq~EgcvvDd~~g~Lyv~e--Ed~--GIw~~d 207 (355)
T 3amr_A 178 -----MNSQTEGMAADDEYGRLYIAE--EDE--AIWKFS 207 (355)
T ss_dssp -----CSSCEEEEEEETTTTEEEEEE--TTT--EEEEEE
T ss_pred -----CCCCcceEEEcCCCCeEEEec--ccc--eEEEEe
Confidence 334677778888777787776 553 356554
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.38 E-value=0.034 Score=44.15 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=71.4
Q ss_pred cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEee
Q 042146 42 SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118 (262)
Q Consensus 42 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 118 (262)
+....|.|-|+.+.......+......+-.....+.++ ..+.++|+++.+.++...- ...|.-=+|-.+ +.|+-.
T Consensus 45 ~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~lV 122 (494)
T 1bpo_A 45 GEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALV 122 (494)
T ss_dssp TTCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEEEE
T ss_pred CCCCeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEEEE
Confidence 34457888888764332111111111111111222222 3899999999888877653 334555566543 344433
Q ss_pred cCCCeEEEEECCC-CeeeeeeecCC----CCeeeEEEccCCCEEEEEeC-------CCeEEEEeCCC
Q 042146 119 TFNETIRIWDIKT-GKCLKVLPAHS----DPVTAIDFNRDGTMIVTSSY-------DGLYRILDAST 173 (262)
Q Consensus 119 ~~dg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~ 173 (262)
+ +..|+-|++.. ..++..+..|. ..|..-..+++.++++..+- .|.+.+|....
T Consensus 123 T-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 123 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred c-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 3 45899999864 34556665443 35666667777776654432 35566776554
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.23 E-value=0.042 Score=42.01 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=67.0
Q ss_pred ceEEEEE---eCCCCEEEeec-------------CCCeEEEEECC---CCeeeeeeec-------------CCCCeeeEE
Q 042146 102 YVFCINF---NPQSNRIVSDT-------------FNETIRIWDIK---TGKCLKVLPA-------------HSDPVTAID 149 (262)
Q Consensus 102 ~v~~~~~---~~~~~~l~~~~-------------~dg~i~vwd~~---~~~~~~~~~~-------------~~~~v~~~~ 149 (262)
.+..|.+ .|+++++++.. .+..|..||+. +++.+....- -......++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 3578899 68877776533 25789999999 7877655431 112478999
Q ss_pred EccCCCEEEEEeCC-CeEEEEeCC----------C---------------CCccEEEEEcCCCeEEEEecCC
Q 042146 150 FNRDGTMIVTSSYD-GLYRILDAS----------T---------------PNGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 150 ~~~~~~~l~~~~~d-g~i~~~d~~----------~---------------~~~~~l~~~~~dg~i~i~d~~~ 195 (262)
..++|+..++++.- +.|..++.. . |++..|++....|.|..+|+..
T Consensus 144 vD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 144 QDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred ECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99999988888776 555444432 2 6788788776799999999874
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.19 E-value=0.0063 Score=51.99 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=61.3
Q ss_pred cceEEEEEeCCCCEEEeec-CC-CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC----
Q 042146 101 NYVFCINFNPQSNRIVSDT-FN-ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST---- 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~-~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~---- 173 (262)
.....|+++|.+.+|+.+. .. +.|.++++........+...-.....|+++|++..| ++-+..+.|..+++..
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence 3456788998655544433 22 678888775332211121222345789999975544 4445667898888754
Q ss_pred -----------C------CccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 174 -----------P------NGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 174 -----------~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
| .+.++++....+.|..+|..+++.+..+..
T Consensus 576 ~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 1 123344444556777787777776666543
No 297
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.17 E-value=0.017 Score=45.70 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=81.9
Q ss_pred ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146 25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF 104 (262)
Q Consensus 25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 104 (262)
.|..+..+|+|++||..+ +..|.|-.+........ ...+..--.++-|.+...+ .....+|.
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~------------~~~~~~~~q~~ty~l~~~~-----~~~~s~I~ 128 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVE------------DVSIQDAFQIFHYSIDEEE-----VGPKSSIK 128 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCC------------CHHHHHTTEEEEEEGGGCC-------CCCCEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCc------------ccccccccceeEEEcCCcc-----cCCCCcee
Confidence 577899999999999886 46888887752110000 0000011124555553211 11367899
Q ss_pred EEEEeC---CCCEEEeecCCCeEEEEECCCC--eeeeeee---------cCCCCeeeEEEccCCCEEEEEe--CCCeEEE
Q 042146 105 CINFNP---QSNRIVSDTFNETIRIWDIKTG--KCLKVLP---------AHSDPVTAIDFNRDGTMIVTSS--YDGLYRI 168 (262)
Q Consensus 105 ~~~~~~---~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~ 168 (262)
.+.||| .+..|++-..|+.|++||+... ++. .++ .....|.+++|.+++-.|+..+ ..|.|+-
T Consensus 129 qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 129 KVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999 5667999999999999999752 122 221 1236789999999887777755 7788765
Q ss_pred Ee
Q 042146 169 LD 170 (262)
Q Consensus 169 ~d 170 (262)
..
T Consensus 208 lc 209 (452)
T 3pbp_A 208 FY 209 (452)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 298
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.14 E-value=0.033 Score=42.01 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=60.6
Q ss_pred eEEEEecCCCc---c--ceecccCCcceEEEEEeCCCCEEEeecCC-----CeEEEEECCCCeeee--eeecCCCCeeeE
Q 042146 81 TIRLWDVPTAT---S--LKTLIGHTNYVFCINFNPQSNRIVSDTFN-----ETIRIWDIKTGKCLK--VLPAHSDPVTAI 148 (262)
Q Consensus 81 ~i~v~d~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~ 148 (262)
.+.++|..+.+ . +..+......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 156 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV 156 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE
Confidence 57778876654 2 1122211111122222 56677777643 368899988765322 222111111222
Q ss_pred EEccCCCEEEEEeCC-----CeEEEEeCCC--------------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146 149 DFNRDGTMIVTSSYD-----GLYRILDAST--------------------PNGKFILVGTLD-----NTLRLWNYSTRK 197 (262)
Q Consensus 149 ~~~~~~~~l~~~~~d-----g~i~~~d~~~--------------------~~~~~l~~~~~d-----g~i~i~d~~~~~ 197 (262)
. -++++++.|+.+ ..+..||..+ .++..++.|+.+ ..+.+||+.+.+
T Consensus 157 ~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 157 V--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp E--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred E--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 2 266777777654 4588888765 345666666653 357778877654
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.04 E-value=0.11 Score=43.64 Aligned_cols=73 Identities=7% Similarity=-0.051 Sum_probs=46.8
Q ss_pred cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC--CCeEEEEeCCC
Q 042146 101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY--DGLYRILDAST 173 (262)
Q Consensus 101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~ 173 (262)
.....+++++.+. +.++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|...++..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG 159 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 159 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC
Confidence 4578899999555 5556667789999998754332223233445689999997555555542 35666666543
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.98 E-value=0.031 Score=42.16 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=47.6
Q ss_pred CCCEEEeecCCC-----eEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC-------CeEEEEeCCC---
Q 042146 111 QSNRIVSDTFNE-----TIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD-------GLYRILDAST--- 173 (262)
Q Consensus 111 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~--- 173 (262)
++.+++.|+.++ .+.+||+.+.+-... +.........+. -++++++.|+.+ ..+..||..+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 566667776543 578899887653222 211111112222 256667776542 3578888775
Q ss_pred -----------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146 174 -----------------PNGKFILVGTLD-----NTLRLWNYSTRK 197 (262)
Q Consensus 174 -----------------~~~~~l~~~~~d-----g~i~i~d~~~~~ 197 (262)
.++..++.|+.+ ..+.+||+.+.+
T Consensus 186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 345666666543 357777776543
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.92 E-value=0.089 Score=40.34 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=42.5
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEEC--CCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDI--KTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
....+..+.+.|++.+++.+...+..+-.|- .+-+.+. ......+..+.+.+++..+ .++.+|.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFS 230 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEe
Confidence 3456888999998888877765444444442 2223322 2345678889998887655 44556776665
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.91 E-value=0.096 Score=40.67 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=25.4
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~ 260 (262)
.-...+.++|+||++.|+.+.. ..+.|..|+++
T Consensus 219 ~l~~pNGia~spDg~~lYvadt-~~~~I~~~~~~ 251 (355)
T 3sre_A 219 GFDFANGINISPDGKYVYIAEL-LAHKIHVYEKH 251 (355)
T ss_dssp EESSEEEEEECTTSSEEEEEEG-GGTEEEEEEEC
T ss_pred CCcccCcceECCCCCEEEEEeC-CCCeEEEEEEC
Confidence 3456789999999988877753 46788888875
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.89 E-value=0.068 Score=40.39 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=35.7
Q ss_pred CCCEEEeecCC----CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC------CeEEEEeCCC
Q 042146 111 QSNRIVSDTFN----ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD------GLYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~ 173 (262)
++.+++.|+.+ ..+.+||+.+.+-... +.........+. -++.+++.|+.+ ..+.+||..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 56677777654 5788999987753222 211111222222 256777777765 4588888776
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.81 E-value=0.079 Score=39.88 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=47.5
Q ss_pred CCCEEEeecCC-----CeEEEEECCCCe---e--eeeeecCCCCeeeEEEccCCCEEEEEeCC-----CeEEEEeCCC--
Q 042146 111 QSNRIVSDTFN-----ETIRIWDIKTGK---C--LKVLPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRILDAST-- 173 (262)
Q Consensus 111 ~~~~l~~~~~d-----g~i~vwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~-- 173 (262)
++.+++.|+.+ ..+.+||+.+.+ - +..+.........+. .++.+++.|+.+ ..+.+||..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777654 368999988765 2 222221112222222 256777777644 3578888765
Q ss_pred ------------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146 174 ------------------PNGKFILVGTLD-----NTLRLWNYSTRK 197 (262)
Q Consensus 174 ------------------~~~~~l~~~~~d-----g~i~i~d~~~~~ 197 (262)
.++..++.|+.+ ..+.+||+.+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 245555555543 346677766543
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.75 E-value=0.2 Score=42.12 Aligned_cols=148 Identities=9% Similarity=-0.018 Sum_probs=78.6
Q ss_pred CcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCee-eeeeecCCCCeeeEEEccCCC-EEEEEeCCCeEEEEeCCCCC-
Q 042146 100 TNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKC-LKVLPAHSDPVTAIDFNRDGT-MIVTSSYDGLYRILDASTPN- 175 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~- 175 (262)
......++|++.+..|+ +-...+.|..+++..... ...+...-.....+++.+.+. ++++-...+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34577899999666555 444567899999875532 223333335678999998555 44555567889888876511
Q ss_pred ----------ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE-ccccceEEEEEcCCCCeEE
Q 042146 176 ----------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV-SHRDPVISVASHPAKNIIA 244 (262)
Q Consensus 176 ----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~ 244 (262)
..-|+.-..+|.|++=|......+......... ...+. ..-...+.++++|++..|+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~------------~~~l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------------RFIIINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS------------CEEEECSSCSSEEEEEEETTTTEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc------------eEEEEeCCCCCCcEEEEEccCCEEE
Confidence 122333334455555443322222222211110 00111 1234567888888766666
Q ss_pred EeeecCCCcEEEEeec
Q 042146 245 SGALDNDRTMKIWTQE 260 (262)
Q Consensus 245 ~~~~d~d~~i~iw~~~ 260 (262)
.+.. ..+.|...+++
T Consensus 187 ~aD~-~~~~I~~~~~d 201 (619)
T 3s94_A 187 WADA-KLNFIHKSNLD 201 (619)
T ss_dssp EEET-TTCCEEEESSS
T ss_pred EEeC-CCCeEEEecCC
Confidence 5543 45666666553
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.64 E-value=0.083 Score=39.90 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=58.1
Q ss_pred eEEEEecCCCccce--ecccCCcceEEEEEeCCCCEEEeecCC------CeEEEEECCCCeeeee--eecCCCCeeeEEE
Q 042146 81 TIRLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFN------ETIRIWDIKTGKCLKV--LPAHSDPVTAIDF 150 (262)
Q Consensus 81 ~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~ 150 (262)
.+.++|..+.+... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-... +......-..+.
T Consensus 71 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 147 (306)
T 3ii7_A 71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE- 147 (306)
T ss_dssp EEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred eEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-
Confidence 56777776654221 22211111122222 56677777654 4689999987753222 211111112222
Q ss_pred ccCCCEEEEEeC---------CCeEEEEeCCC--------------------CCccEEEEEcCC-----CeEEEEecCCC
Q 042146 151 NRDGTMIVTSSY---------DGLYRILDAST--------------------PNGKFILVGTLD-----NTLRLWNYSTR 196 (262)
Q Consensus 151 ~~~~~~l~~~~~---------dg~i~~~d~~~--------------------~~~~~l~~~~~d-----g~i~i~d~~~~ 196 (262)
-++++++.|+. -..+.+||..+ .++..++.|+.+ ..+.+||+.+.
T Consensus 148 -~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 148 -ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp -ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred -ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 25666666653 34578888766 244555555533 34667777654
Q ss_pred c
Q 042146 197 K 197 (262)
Q Consensus 197 ~ 197 (262)
+
T Consensus 227 ~ 227 (306)
T 3ii7_A 227 E 227 (306)
T ss_dssp E
T ss_pred c
Confidence 3
No 307
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.62 E-value=0.097 Score=37.53 Aligned_cols=62 Identities=6% Similarity=0.030 Sum_probs=41.5
Q ss_pred eEEEEEeCCCCEEEeecCCCeEEEEECCCCeee------eee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL------KVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
..++.|.|+|.+.++ .||.|+-++..+...- ..+ ..-=..+..|.+.|+|.+.++. |+.++-
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 467899999998888 5699988876332110 111 1112467999999999877776 777543
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.60 E-value=0.17 Score=39.25 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=47.4
Q ss_pred cceEEEEEeCCCCEEEeec-----------------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-C
Q 042146 101 NYVFCINFNPQSNRIVSDT-----------------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-Y 162 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 162 (262)
...+.+.+.++|.+.++.. ..|.|..+|.. +. ..+...-..-+.++|+||++.|+.+. .
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCC
Confidence 4578999999998777654 13566666653 22 22222234568999999998777665 5
Q ss_pred CCeEEEEeCC
Q 042146 163 DGLYRILDAS 172 (262)
Q Consensus 163 dg~i~~~d~~ 172 (262)
.+.|..|++.
T Consensus 242 ~~~I~~~~~~ 251 (355)
T 3sre_A 242 AHKIHVYEKH 251 (355)
T ss_dssp GTEEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 7889999876
No 309
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.53 E-value=0.28 Score=45.16 Aligned_cols=128 Identities=11% Similarity=0.175 Sum_probs=72.3
Q ss_pred CCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec
Q 042146 43 AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119 (262)
Q Consensus 43 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 119 (262)
...+|.|-|+.+.......+......+-.....|.. -..+.++|+++.+.++...- ...|.-=+|-.. +.|+-.+
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT 123 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT 123 (1630)
T ss_pred CCceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc
Confidence 344788888876443221111111111111122222 23899999998887776553 345555566543 3343333
Q ss_pred CCCeEEEEECCC-CeeeeeeecC----CCCeeeEEEccCCCEEEEEe-------CCCeEEEEeCCC
Q 042146 120 FNETIRIWDIKT-GKCLKVLPAH----SDPVTAIDFNRDGTMIVTSS-------YDGLYRILDAST 173 (262)
Q Consensus 120 ~dg~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~ 173 (262)
+..|+-|++.. ..++..+..| ...|..-..+++.++++..+ ..|.+.+|....
T Consensus 124 -~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred -CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 45899999963 3455555444 34677777778888766443 347788887665
No 310
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.52 E-value=0.1 Score=39.66 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCCEEEeecCC--------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeC-C-----CeEEEEeCCC-
Q 042146 111 QSNRIVSDTFN--------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSY-D-----GLYRILDAST- 173 (262)
Q Consensus 111 ~~~~l~~~~~d--------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~~d~~~- 173 (262)
++.+++.|+.+ ..+.+||+.+.+-.. .+...... .+++ ..++++++.|+. + ..+.+||..+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 56666666632 358899998764322 12111111 1222 235667777775 2 4688888776
Q ss_pred -------------------CCccEEEEEcCCC-----eEEEEecCCCc
Q 042146 174 -------------------PNGKFILVGTLDN-----TLRLWNYSTRK 197 (262)
Q Consensus 174 -------------------~~~~~l~~~~~dg-----~i~i~d~~~~~ 197 (262)
.++..++.|+.++ .+.+||+.+.+
T Consensus 176 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 2455666665443 46677776543
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.44 E-value=0.11 Score=39.30 Aligned_cols=113 Identities=8% Similarity=0.052 Sum_probs=59.3
Q ss_pred eEEEEecCCCccce--ecccCCcceEEEEEeCCCCEEEeecCC-----CeEEEEECCCCeeeee--eecCCCCeeeEEEc
Q 042146 81 TIRLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFN-----ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFN 151 (262)
Q Consensus 81 ~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~ 151 (262)
.+.++|..+.+... .+.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 167 (308)
T 1zgk_A 91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL- 167 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred eEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-
Confidence 57777876654221 12211111222222 56677776643 3688899887653221 2111112222222
Q ss_pred cCCCEEEEEeCC-----CeEEEEeCCC--------------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146 152 RDGTMIVTSSYD-----GLYRILDAST--------------------PNGKFILVGTLD-----NTLRLWNYSTRK 197 (262)
Q Consensus 152 ~~~~~l~~~~~d-----g~i~~~d~~~--------------------~~~~~l~~~~~d-----g~i~i~d~~~~~ 197 (262)
++.+++.|+.+ ..+..||..+ .++..++.|+.+ ..+.+||+.+.+
T Consensus 168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 56777777654 4588888765 245556666543 457777776543
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.43 E-value=0.18 Score=37.88 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCEEEeecCC-----CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCCC
Q 042146 111 QSNRIVSDTFN-----ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~ 173 (262)
++.+++.|+.+ ..+.+||+.+.+-.. .+.........+. -++.+++.|+.++ .+.+||..+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCC
Confidence 56677777654 358899988765322 2221111222222 2567777777553 477888765
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.43 E-value=0.35 Score=40.81 Aligned_cols=115 Identities=9% Similarity=-0.012 Sum_probs=67.0
Q ss_pred CceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146 24 RAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY 102 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~ 102 (262)
..+..++|++.+..| .+-..++.|..++++. ......+......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-----------------------------------~~~~~v~~~g~~~ 81 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG-----------------------------------SALEHVVEFGLDY 81 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-----------------------------------CSCEEEECSSCSC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCC-----------------------------------CCcEEEEeCCCCC
Confidence 457789999865544 4445567777765532 1111111111234
Q ss_pred eEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CCCeEEEEeCCC
Q 042146 103 VFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YDGLYRILDAST 173 (262)
Q Consensus 103 v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~ 173 (262)
...+++++.+. +.++-...+.|.+.++........+...-.....|++.|....|+.+. ..+.|...++..
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG 155 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG 155 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC
Confidence 56788987544 445556678999999865432222223334568999998555555554 246677776554
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.38 E-value=0.37 Score=40.61 Aligned_cols=147 Identities=10% Similarity=0.026 Sum_probs=79.7
Q ss_pred cceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCCC----
Q 042146 101 NYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDASTP---- 174 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~---- 174 (262)
..+..++|++.+..+ .+-..++.|..+++........+.........+++.+.+..| ++-...+.|.+.++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457799999965555 455667899999987554433333333456788998755544 44455678888887541
Q ss_pred -------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146 175 -------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247 (262)
Q Consensus 175 -------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 247 (262)
...-|+.....|.|++-|......+..+...... ...+...-.....+++++++..|+.+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~------------~~~l~~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE------------RTTLVPNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------------CEEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc------------eEEEECCCCCcceEEEccccCEEEEEE
Confidence 1122333334555555443322222222211111 111111334567777777666555554
Q ss_pred ecCCCcEEEEeec
Q 042146 248 LDNDRTMKIWTQE 260 (262)
Q Consensus 248 ~d~d~~i~iw~~~ 260 (262)
. ..+.|...+++
T Consensus 185 ~-~~~~I~~~d~d 196 (628)
T 4a0p_A 185 L-DTNLIESSNML 196 (628)
T ss_dssp T-TTTEEEEEETT
T ss_pred C-CCCEEEEEcCC
Confidence 2 35566665543
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.018 Score=44.33 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=66.2
Q ss_pred CEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEc--c-CCCEEEEE-eCCCeEEEEeCCC--------------
Q 042146 113 NRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFN--R-DGTMIVTS-SYDGLYRILDAST-------------- 173 (262)
Q Consensus 113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~dg~i~~~d~~~-------------- 173 (262)
..++.++.||.|.-.|.++|+....++.. ..++....-. + ++..++.. +.||.|..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999999888653 1222221100 1 22333333 5788888777654
Q ss_pred ----C--------------CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146 174 ----P--------------NGKFILVGTLDNTLRLWNYSTRKILKTYSGY 205 (262)
Q Consensus 174 ----~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 205 (262)
. .+..+++|+.+|.+.-.|+++|+.+..+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1 5677899999999999999999999988754
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.21 E-value=0.15 Score=36.58 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=44.3
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCee------eeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC------LKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (262)
.+..++|+|++.+.++ .+|.+.-.+..+... -..+-. --....++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 5669999998886666 678877777644211 111210 0112478999999988777 56999888763
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.31 Score=37.54 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=56.4
Q ss_pred CCCEEEeecCCCeEEEEECCCCeeeeeeecCC--CC-----eeeEEEc-----cCCCEEEEEeCCCeEEE-------EeC
Q 042146 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS--DP-----VTAIDFN-----RDGTMIVTSSYDGLYRI-------LDA 171 (262)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~~~l~~~~~dg~i~~-------~d~ 171 (262)
.+..+++|+.+|.+...|+++|+.+.++.... +. ..|.... ..+..++.+..+..+.+ |..
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~~sG~~W~~ 189 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNV 189 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECCTTSCCCCC
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEECCCCCeEEE
Confidence 46678999999999999999999999885321 10 0111110 11345555555544444 443
Q ss_pred CC-------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146 172 ST-------------------PNGKFILVGTLDNTLRLWNYSTRKILK 200 (262)
Q Consensus 172 ~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~ 200 (262)
.- .++.+ +.++.||.|.-+|..+|+.+.
T Consensus 190 ~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 190 TYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 21 12455 557889999999999998876
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.13 E-value=0.16 Score=38.44 Aligned_cols=61 Identities=5% Similarity=0.031 Sum_probs=33.7
Q ss_pred CCCEEEeecC----C-----CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC-----CeEEEEeCCC
Q 042146 111 QSNRIVSDTF----N-----ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~----d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~ 173 (262)
++.+++.|+. + ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666677665 2 3688899887653221 2111112222222 56677776643 3578888765
No 319
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.79 E-value=0.45 Score=36.36 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=37.5
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..+..+.+.+++..++++. +|.|.. ....++.-.. .......+..+++.|++.+++.+...+..+-.|
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred CCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 3466777776666666654 554432 1122322111 223456788999999888776664443333344
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.77 E-value=0.25 Score=37.50 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=33.1
Q ss_pred CCCEEEeecCC-------CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeC------CCeEEEEeCCC
Q 042146 111 QSNRIVSDTFN-------ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSY------DGLYRILDAST 173 (262)
Q Consensus 111 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~ 173 (262)
++.+++.|+.+ ..+.+||+.+.+-... +...... .+++. .++.+++.|+. -..+.+||..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56666666643 2588899887653221 1111111 11222 45667777764 23588888776
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.59 E-value=0.71 Score=37.21 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=39.8
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee--eeeec------CCCCeeeEEEccC---CCEEEEEe
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--KVLPA------HSDPVTAIDFNRD---GTMIVTSS 161 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~ 161 (262)
.....|+|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|+.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 35679999999998877665567988886555432 22211 2456779999995 44444443
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.56 E-value=0.56 Score=36.35 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=36.5
Q ss_pred cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeee---e----ecCCCCeeeEEEccC---CCEEEEE
Q 042146 101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKV---L----PAHSDPVTAIDFNRD---GTMIVTS 160 (262)
Q Consensus 101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~ 160 (262)
.....|+|.|+++ ++++ ...|.|++++.. ++.... + .........|+++|+ +..|+.+
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 3467899999999 5554 457999999853 332111 1 112346789999995 4444443
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.47 E-value=0.66 Score=36.00 Aligned_cols=70 Identities=6% Similarity=0.005 Sum_probs=43.7
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeee---cCCCCeeeEEEccC---CCEEEEEeC----C----Ce
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLP---AHSDPVTAIDFNRD---GTMIVTSSY----D----GL 165 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g~ 165 (262)
.....|+|.|+++++++ ..+|.|.++| .+++ .+..+. ........|+++|+ +..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45678999999986555 4469999997 4454 222211 12356889999997 444544432 2 45
Q ss_pred EEEEeCC
Q 042146 166 YRILDAS 172 (262)
Q Consensus 166 i~~~d~~ 172 (262)
|..|+..
T Consensus 107 v~r~~~~ 113 (354)
T 3a9g_A 107 VIRGRLD 113 (354)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 6666543
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.31 E-value=0.71 Score=35.58 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=25.2
Q ss_pred CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeC------CCeEEEEeC
Q 042146 122 ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSY------DGLYRILDA 171 (262)
Q Consensus 122 g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~ 171 (262)
..+.+||+.+.+-.. .+......-.+++. -++++++.|+. ...+..||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 578999998764322 22211111122332 25666666653 345677775
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.12 E-value=0.76 Score=34.72 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=45.9
Q ss_pred eCCCCEEEeecC-----C------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCC--------CeEE
Q 042146 109 NPQSNRIVSDTF-----N------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYD--------GLYR 167 (262)
Q Consensus 109 ~~~~~~l~~~~~-----d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~ 167 (262)
..++.+++.|+. . ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence 346777777763 1 127788988765322 11111111112222 56666777632 3588
Q ss_pred EEeCCC--------------------CCccEEEEEcC-C-----CeEEEEecCCC
Q 042146 168 ILDAST--------------------PNGKFILVGTL-D-----NTLRLWNYSTR 196 (262)
Q Consensus 168 ~~d~~~--------------------~~~~~l~~~~~-d-----g~i~i~d~~~~ 196 (262)
+||..+ .++..++.|+. + ..+.+||+.+.
T Consensus 121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 888766 24455566654 1 35677777654
No 326
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.03 E-value=1.6 Score=37.95 Aligned_cols=74 Identities=9% Similarity=-0.063 Sum_probs=49.4
Q ss_pred CcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CC-CeEEEEeCCC
Q 042146 100 TNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YD-GLYRILDAST 173 (262)
Q Consensus 100 ~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~ 173 (262)
......|++.+.++ ++++-...+.|.+.++........+.........|++.|....|+.+. .. +.|...++..
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 34567899998664 455666678999999875544333333345678999999755555554 33 6788777654
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.73 E-value=1.1 Score=34.65 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=58.9
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV 103 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v 103 (262)
.....++|.|+|+++++ ..+|.|++++ .. .. -.+-++. .........
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~------------------------~~~~~~~------v~~~g~~~p 77 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RL------------------------STYAELS------VYHRGESGL 77 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EE------------------------EEEEECC------CCCSTTCSE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-Cc------------------------cEeecce------EeecCCCCc
Confidence 34679999999985555 5568888875 21 00 0001111 111123457
Q ss_pred EEEEEeCC---CCEEEeecC-C-----CeEEEEECCCCe-----ee-eeee---cCCCCeeeEEEccCCCEEEEE
Q 042146 104 FCINFNPQ---SNRIVSDTF-N-----ETIRIWDIKTGK-----CL-KVLP---AHSDPVTAIDFNRDGTMIVTS 160 (262)
Q Consensus 104 ~~~~~~~~---~~~l~~~~~-d-----g~i~vwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~ 160 (262)
..|+++|+ +..|+++.. . +.|..++...++ .+ ..+. ........++|.|+|.++++.
T Consensus 78 ~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 78 LGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred eeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 88999998 555554433 2 578888876431 11 1132 111234689999999766654
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.72 E-value=2.4 Score=38.58 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=56.0
Q ss_pred eeEEEEecCCCccceeccc-CCcceEEEEEeC----CCCEEEeec----------CCCeEEEEECCCCee--eeeeecCC
Q 042146 80 ATIRLWDVPTATSLKTLIG-HTNYVFCINFNP----QSNRIVSDT----------FNETIRIWDIKTGKC--LKVLPAHS 142 (262)
Q Consensus 80 ~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~----~~~~l~~~~----------~dg~i~vwd~~~~~~--~~~~~~~~ 142 (262)
..|++.|..+.+.+..+.- ....+.+++... ...++++|+ ..|.|.+|++..++. ++.. ..+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~ 885 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVK 885 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EES
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcC
Confidence 4788999888876654432 234566665432 246787775 357899999875433 2222 246
Q ss_pred CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173 (262)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (262)
+++++++-- +| +|++| ...++++|++..
T Consensus 886 g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~ 913 (1158)
T 3ei3_A 886 GAVYSMVEF-NG-KLLAS-INSTVRLYEWTT 913 (1158)
T ss_dssp SCEEEEEEE-TT-EEEEE-ETTEEEEEEECT
T ss_pred CcCEEEeee-CC-EEEEE-cCCEEEEEECCC
Confidence 788887644 35 44443 357889998864
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.61 E-value=0.14 Score=42.08 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=50.7
Q ss_pred ceEEEEEeCCCCEEEeec-CCCeEEEEECCCC------ee-------eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146 102 YVFCINFNPQSNRIVSDT-FNETIRIWDIKTG------KC-------LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~------~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 167 (262)
....+.++|||+++++++ -+.++.++|++.. +. +.+.+. .......+|.++|....+...|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEE
Confidence 345678999999987654 5779999998742 11 223332 33457789999996666777999999
Q ss_pred EEeCCC
Q 042146 168 ILDAST 173 (262)
Q Consensus 168 ~~d~~~ 173 (262)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999654
No 330
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.46 E-value=1.3 Score=34.26 Aligned_cols=57 Identities=11% Similarity=0.265 Sum_probs=36.7
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECCCCee--eeeee---cCCCCeeeEEEccC---CCEEEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC--LKVLP---AHSDPVTAIDFNRD---GTMIVTS 160 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~ 160 (262)
.....++|.|+++++++ ...|.|.+++ .++. +..+. ........|+++|+ +..|+++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 34678999999986655 4569999998 3432 22111 12346789999997 4444443
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.32 E-value=1.4 Score=34.07 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=46.5
Q ss_pred CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee--eee----ecCCCCeeeEEEccC---CCEEEEE---eCCCeEE
Q 042146 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--KVL----PAHSDPVTAIDFNRD---GTMIVTS---SYDGLYR 167 (262)
Q Consensus 100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~ 167 (262)
-.....|+|.|++.++++--..|.|++++...++.. ..+ .........|+++|+ ...|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345679999999998887766899999987655432 111 123456789999995 3344432 2344555
Q ss_pred EEeC
Q 042146 168 ILDA 171 (262)
Q Consensus 168 ~~d~ 171 (262)
-|..
T Consensus 111 R~~~ 114 (347)
T 3das_A 111 RMLY 114 (347)
T ss_dssp EEEB
T ss_pred EEEe
Confidence 5543
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.06 E-value=1.9 Score=34.71 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeec
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSL 52 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~ 52 (262)
.....|+|.|+|+++++-...+.|++++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~ 55 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNP 55 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEEC
Confidence 45679999999997777554456777743
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.78 E-value=1.6 Score=32.92 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=33.6
Q ss_pred eCCCCEEEeecC----CC-------eEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC-------CeEEE
Q 042146 109 NPQSNRIVSDTF----NE-------TIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD-------GLYRI 168 (262)
Q Consensus 109 ~~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~ 168 (262)
..++.+++.|+. ++ .+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 346777777773 12 277889877653221 2111111122222 56777777754 24778
Q ss_pred EeCCC
Q 042146 169 LDAST 173 (262)
Q Consensus 169 ~d~~~ 173 (262)
||..+
T Consensus 132 yd~~~ 136 (318)
T 2woz_A 132 YDPVA 136 (318)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 88765
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.62 E-value=1.9 Score=33.13 Aligned_cols=152 Identities=11% Similarity=0.134 Sum_probs=88.2
Q ss_pred ccceecccC----cCceEEEEEccCCCeEEEec-------CCCeEEEeecCCCCCCCC------------C-CCC--CCc
Q 042146 14 TLTQTLNGH----LRAVSYVKFSHDGRLLTSSS-------AEKTLLTYSLSSISNFDS------------T-PPS--PLQ 67 (262)
Q Consensus 14 ~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~------------~-~~~--~~~ 67 (262)
.+.+.++.| ...|..-..+++.++++..+ -.|.+.+|+.+....... . ... .+.
T Consensus 138 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 138 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEE
Confidence 455555544 34577777788888776543 237888998875321100 0 000 011
Q ss_pred cccCCccccccceeEEEEecCCC---cccee-------cc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146 68 KFTGHEQGISDLATIRLWDVPTA---TSLKT-------LI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135 (262)
Q Consensus 68 ~~~~~~~~v~~~~~i~v~d~~~~---~~~~~-------~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 135 (262)
.+..... ..+.+++.++... .+... +. ...+---++.+++....++.-+.-|.|++||++++.++
T Consensus 218 ~fa~r~~---~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 218 CFAVRGQ---AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEET---TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEecC---CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 1111110 1136778877432 11110 11 12344567888888888999999999999999999998
Q ss_pred eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
..-+-...+|..-+-++...-++.....|.|..
T Consensus 295 ~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~ 327 (365)
T 2xzh_A 295 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 327 (365)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTCEEEE
T ss_pred EEeccCCCceEEecccCCCCcEEEEcCCCEEEE
Confidence 887766667765555544444444455555543
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.49 E-value=2.1 Score=33.19 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=58.6
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY 102 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~ 102 (262)
-.....|+|.|+|+++++ ..+|.|++++... . . .+-++. ........
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~-------~------------------~~~~~~------v~~~g~~g 74 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K-------K------------------LVASFD------VANVGEAG 74 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E-------E------------------EEEECC------CCCSTTCS
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c-------e------------------Eeeccc------eeecCCCc
Confidence 345689999999985555 5558888774211 0 0 000110 01112245
Q ss_pred eEEEEEeCC---CCEEEeecC----C----CeEEEEECCCC-------eee-eeeec-CCCCeeeEEEccCCCEEEEEe
Q 042146 103 VFCINFNPQ---SNRIVSDTF----N----ETIRIWDIKTG-------KCL-KVLPA-HSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 103 v~~~~~~~~---~~~l~~~~~----d----g~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~ 161 (262)
...|+++|+ +..|+++.. + ..|..|+.... +.+ ..+.. .......|+|.|+|.++++.+
T Consensus 75 ~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 75 LLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 778999997 555554433 2 56777876543 111 11221 112346799999998766643
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.81 E-value=2.6 Score=32.54 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeec
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSL 52 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~ 52 (262)
.....|+|.|+|+.|+++...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 34679999999993444456788888863
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.17 E-value=3.1 Score=31.89 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCCEEEeecC-C---------CeEEEEECCCCeeee--eee-cCCCCeeeEEEccCCCEEEEEeCC
Q 042146 111 QSNRIVSDTF-N---------ETIRIWDIKTGKCLK--VLP-AHSDPVTAIDFNRDGTMIVTSSYD 163 (262)
Q Consensus 111 ~~~~l~~~~~-d---------g~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d 163 (262)
++.+++.|+. + ..+.+||+.+.+-.. .+. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 4666666665 2 468899998765322 121 1111222222 567777888754
No 338
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=91.90 E-value=3 Score=31.04 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=45.4
Q ss_pred CcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 100 TNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 100 ~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
...|..+.. + +..+++..+.+|.++...+..- .....++. .+.+..+........++..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 344555433 3 4678888999999999887542 11222222 345555555555667888888898888875
Q ss_pred CC
Q 042146 172 ST 173 (262)
Q Consensus 172 ~~ 173 (262)
..
T Consensus 145 ~e 146 (276)
T 3no0_A 145 RE 146 (276)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.62 E-value=2.2 Score=35.38 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=40.7
Q ss_pred CeeeEEEccCCCEEEEEe-CCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEE
Q 042146 144 PVTAIDFNRDGTMIVTSS-YDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRL 190 (262)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i 190 (262)
....+..+|||++++.++ .+.++.++|.+. ++|.-..+--.|..|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 347789999999887776 688999999874 55655555568899999
Q ss_pred EecCC
Q 042146 191 WNYST 195 (262)
Q Consensus 191 ~d~~~ 195 (262)
|++..
T Consensus 404 Wni~~ 408 (638)
T 3sbq_A 404 WNMEE 408 (638)
T ss_dssp EEHHH
T ss_pred EeccH
Confidence 99864
No 340
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.36 E-value=3.3 Score=33.49 Aligned_cols=53 Identities=6% Similarity=-0.007 Sum_probs=33.7
Q ss_pred cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCe---eeeeee---c------CCCCeeeEEEccC
Q 042146 101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGK---CLKVLP---A------HSDPVTAIDFNRD 153 (262)
Q Consensus 101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~---~~~~~~---~------~~~~v~~~~~~~~ 153 (262)
..-..|+|.|++. .++++...|.|++++..... .+..+. . .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3456899999986 45555678999999754221 112111 1 1356788999985
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.28 E-value=2.7 Score=37.44 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
++..++++-+.|+++|+|++.+++++.+..
T Consensus 245 ~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 245 STYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 466789999999999999999999988764
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.21 E-value=4.2 Score=31.42 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
..-...+.|+|.|+|+++++--..|.|++++...... -.+-.+. .......
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~------------------------~~v~~~~-----~v~~~g~ 79 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK------------------------TELGEVP-----GVSPSGE 79 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------------------------EEEEECT-----TCCCBTT
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE------------------------eeecccC-----ceeecCC
Confidence 3345578999999999777766588888885321100 0000000 0111234
Q ss_pred cceEEEEEeCC---CCEEEee---cCCCeEEEEECCCC----------eee-eeeec-CCCCeeeEEEccCCCEEEEEe
Q 042146 101 NYVFCINFNPQ---SNRIVSD---TFNETIRIWDIKTG----------KCL-KVLPA-HSDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 101 ~~v~~~~~~~~---~~~l~~~---~~dg~i~vwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~ 161 (262)
.....|+++|+ +..|+.. ..++.|.-|.+..+ +.+ ..+.. .......|+|.|+|.++++.+
T Consensus 80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 56788999985 3444432 23456666765541 111 11211 112346799999998777654
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.05 E-value=6.8 Score=33.52 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCCCEEEeecCC----CeEEEEECCCCeeeeee--------ecCCCCeeeEEEcc-CCCEEEEEeCCC------eEEEEe
Q 042146 110 PQSNRIVSDTFN----ETIRIWDIKTGKCLKVL--------PAHSDPVTAIDFNR-DGTMIVTSSYDG------LYRILD 170 (262)
Q Consensus 110 ~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~~~dg------~i~~~d 170 (262)
.++.+++.|+.+ ..+.+||+.+++-...- ...... .+++..+ ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 456677777643 46888998876532221 111112 2333333 677778877543 477888
Q ss_pred CCC---------------------CCccEEEEEcCCC--eEEEEecCCCc
Q 042146 171 AST---------------------PNGKFILVGTLDN--TLRLWNYSTRK 197 (262)
Q Consensus 171 ~~~---------------------~~~~~l~~~~~dg--~i~i~d~~~~~ 197 (262)
..+ .++..++.|+.++ .+.+||+.+.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 766 2666677776544 57788877654
No 344
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.89 E-value=9.4 Score=34.89 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=75.5
Q ss_pred eEEEEecCCCccceecccC-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee--eeeecCCCCeeeEEEccC----
Q 042146 81 TIRLWDVPTATSLKTLIGH-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRD---- 153 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~---- 153 (262)
.|++.+......+..+... ...|...+.+ +.+++.++ ++.+.++++..++.. ... .-...|.|+++.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSN 568 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSST
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCc
Confidence 5777776655555555533 3456666665 34666654 678888877655422 222 23568999999863
Q ss_pred --CCEEEEEeC-CCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEec--CCCcee
Q 042146 154 --GTMIVTSSY-DGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNY--STRKIL 199 (262)
Q Consensus 154 --~~~l~~~~~-dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~--~~~~~~ 199 (262)
++++++|.. |++++++++.. ....+|..|-.||.+.-+.+ .+|++.
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~ 642 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 642 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence 468999996 99999999876 13457888889998765544 344443
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.57 E-value=5.7 Score=31.89 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=90.6
Q ss_pred ccceecccC----cCceEEEEEccCCCeEEEec-------CCCeEEEeecCCCCCCCCC-------------CCC--CCc
Q 042146 14 TLTQTLNGH----LRAVSYVKFSHDGRLLTSSS-------AEKTLLTYSLSSISNFDST-------------PPS--PLQ 67 (262)
Q Consensus 14 ~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~~-------------~~~--~~~ 67 (262)
.+.+.+..| ...|..-..+++.++++..+ -.|.+.+|+.+........ ... .+.
T Consensus 137 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEE
Confidence 455555554 35577777788999876543 2478889987653211000 000 001
Q ss_pred cccCCccccccceeEEEEecCCC---ccce-----e--cc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146 68 KFTGHEQGISDLATIRLWDVPTA---TSLK-----T--LI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135 (262)
Q Consensus 68 ~~~~~~~~v~~~~~i~v~d~~~~---~~~~-----~--~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 135 (262)
.+..... ..+.+++.++... .+.. . +. ...+--.++.+++....++.-+.-|.|.+||++++.++
T Consensus 217 ~fa~r~~---~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 217 CFAVRGQ---AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEECST---TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEecC---CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 1111100 0136777777432 1110 0 11 12344567889998888999999999999999999998
Q ss_pred eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
..-+-...+|..-+.+....-++.....|.|....+
T Consensus 294 ~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 294 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred eeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 887766667766555555455555556666544443
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.49 E-value=9.2 Score=34.11 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.9
Q ss_pred cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
..+.+++..++..++++-+ .|+++|+|++.+
T Consensus 236 ~~~~~~~~~~~~~~lftl~--~D~~LRiWsl~t 266 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLS--LDYKLKVLDLST 266 (950)
T ss_dssp TCEEEEEEETTTTEEEEEE--TTCEEEEEETTT
T ss_pred ceEEEEeecCCCcEEEEEE--CCCEEEEEECCC
Confidence 4577888888999999999 899999999865
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.97 E-value=8.5 Score=32.92 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=38.6
Q ss_pred EEEeC-CCCEEEeecCC------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEeCCC
Q 042146 106 INFNP-QSNRIVSDTFN------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDAST 173 (262)
Q Consensus 106 ~~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~ 173 (262)
++..+ ++.+++.|+.+ ..+.+||+.+.+-.. .+...... .+++...++.+++.|+.++ .+.+||..+
T Consensus 445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence 33343 67777777643 358889988754322 22111112 2233324778888887654 688888765
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.24 E-value=22 Score=33.40 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=84.7
Q ss_pred ccceecccC----cCceEEEEEccCCCeEEEec-------CCCeEEEeecCCCCCCCC---------------CCCCCCc
Q 042146 14 TLTQTLNGH----LRAVSYVKFSHDGRLLTSSS-------AEKTLLTYSLSSISNFDS---------------TPPSPLQ 67 (262)
Q Consensus 14 ~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~---------------~~~~~~~ 67 (262)
.+.+.+..| ...|..-..+++.++++..| -.|.+.+|+.+....... ..+..+.
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEE
Confidence 455666655 45677778888888877433 358889998875322100 0001111
Q ss_pred cccCCccccccceeEEEEecCCC---cccee-------cc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146 68 KFTGHEQGISDLATIRLWDVPTA---TSLKT-------LI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135 (262)
Q Consensus 68 ~~~~~~~~v~~~~~i~v~d~~~~---~~~~~-------~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 135 (262)
.+..... . .+.+++.++... .+... ++ ...+-..++..++....++.-+.-|.|.+||++++.++
T Consensus 217 ~f~~~~~--~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 217 CFAVRGQ--A-GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEecC--C-CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 1111111 0 136777777432 11110 11 11233456778887788888889999999999999887
Q ss_pred eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
..-+-...+|...+-++...-++.....|.|.-.
T Consensus 294 ~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 294 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred hhccccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 6655445555544444333333333344544333
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.50 E-value=13 Score=30.01 Aligned_cols=29 Identities=21% Similarity=0.024 Sum_probs=21.9
Q ss_pred CceEEEEEccCCC-eEEEecCCCeEEEeec
Q 042146 24 RAVSYVKFSHDGR-LLTSSSAEKTLLTYSL 52 (262)
Q Consensus 24 ~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~ 52 (262)
..-+.|+|.|++. .|+++...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 3457899999996 4555577899999854
No 350
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=85.20 E-value=4.7 Score=33.68 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCEEEeecCC------------CeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEe
Q 042146 103 VFCINFNPQSNRIVSDTFN------------ETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 103 v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 161 (262)
.--|+|+|.|+++++-..+ ..+.+.+..+++..+.+..+ ...++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4668999999977764322 34667777778776666554 45899999999998877653
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.02 E-value=4.5 Score=36.84 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203 (262)
Q Consensus 174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 203 (262)
++..++++-+.|+++|+|++.+++++.+..
T Consensus 247 ~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 247 STYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred CCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 456789999999999999999998887754
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.78 E-value=16 Score=27.50 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=46.5
Q ss_pred EEEeCCCCEEEeecC--------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CC--CeEE
Q 042146 106 INFNPQSNRIVSDTF--------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YD--GLYR 167 (262)
Q Consensus 106 ~~~~~~~~~l~~~~~--------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~ 167 (262)
--+++++.+|+-... ...|+..++..++.. .+.. . ....|+++++.|+-.. .+ ..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--D--PCIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--S--CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--C--CccEEEEeCCEEEEEeecCCCCceEE
Confidence 345777887765433 246777787765432 2221 1 1236778888877765 23 3444
Q ss_pred EEeCCC---------------CCccEEEEEc-CCCeEEEEecCCCc
Q 042146 168 ILDAST---------------PNGKFILVGT-LDNTLRLWNYSTRK 197 (262)
Q Consensus 168 ~~d~~~---------------~~~~~l~~~~-~dg~i~i~d~~~~~ 197 (262)
.-++.. ++++.|+-.+ ....|++-++..+.
T Consensus 133 ~~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp EEETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred EEECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 445443 2334444333 24566666665444
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=79.76 E-value=15 Score=30.56 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=43.8
Q ss_pred cceEEEEEeCCCCEEEeecC------------CCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEe
Q 042146 101 NYVFCINFNPQSNRIVSDTF------------NETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSS 161 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 161 (262)
.....|.|+++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999988773221 226777888778766555443 35789999999999887764
No 354
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=79.39 E-value=30 Score=29.79 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=69.4
Q ss_pred cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC---CCCCCCccc-cCCcc--ccccceeEEEEecCCCccceec
Q 042146 23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPLQKF-TGHEQ--GISDLATIRLWDVPTATSLKTL 96 (262)
Q Consensus 23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~-~~~~~--~v~~~~~i~v~d~~~~~~~~~~ 96 (262)
...|.++.-..+|. |-.|+.+| |..||-........ .....+..+ ..... .+....-+..+|..+.+.....
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~ 98 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPE 98 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTEEEEEETTTTEECCCS
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECcc
Confidence 45699998888775 44555666 55566322111110 001111111 11111 1111225677777665432211
Q ss_pred ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee----cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146 97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP----AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (262)
......|.++.. .++ .+..++.+ -|..+|..+++...... .....|.++...+++.+.+ ++..| +..++.
T Consensus 99 ~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~ 172 (758)
T 3ott_A 99 TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIP 172 (758)
T ss_dssp CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEET
T ss_pred cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCcc
Confidence 112235777654 344 45555555 57889987665332200 1234678888777776544 44443 556654
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.64 E-value=3.5 Score=37.59 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146 230 PVISVASHPAKNIIASGALDNDRTMKIWTQEK 261 (262)
Q Consensus 230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~ 261 (262)
.+.+++..++..++++-+ .|+++|+|++.+
T Consensus 239 ~~vs~~~~~~~~~lftL~--~D~~LRiWsl~t 268 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLS--LDYKLKVLDLST 268 (1139)
T ss_dssp CBSCCEEETTTTEEEEEB--TTCEEEEEETTT
T ss_pred eeEEeeccCCccEEEEEe--CCCEEEEEECCC
Confidence 455666778889999999 999999999865
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=74.52 E-value=25 Score=26.49 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=45.1
Q ss_pred cceEEEEEe---CCCCEEEeecCCCeEEEEECCC-------CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 101 NYVFCINFN---PQSNRIVSDTFNETIRIWDIKT-------GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 101 ~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..|..+..- +++.+++..+..|.++.-.+.. +.....+..+ +.+..+........++..+.+|.+..+.
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 445555432 3566788889999999987642 1122223333 5555555555556788888899888887
Q ss_pred CCC
Q 042146 171 AST 173 (262)
Q Consensus 171 ~~~ 173 (262)
...
T Consensus 174 ~~~ 176 (307)
T 1zi0_A 174 ESS 176 (307)
T ss_dssp GGG
T ss_pred HHH
Confidence 543
No 357
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=74.25 E-value=13 Score=23.12 Aligned_cols=79 Identities=6% Similarity=0.071 Sum_probs=44.3
Q ss_pred CCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeE
Q 042146 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTL 188 (262)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i 188 (262)
+.+.+.-..||.+.+|+...+..+..-... ...-..+.+..+|++++... ++.+ +|.... ..+.+.++=..||.+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~~~~~~~~L~~dGnl 101 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNTVGQEGDYVLILQINGQA 101 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSCCCSSSCCEEEECTTSCE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCCcCCCCCEEEEEcCCceE
Confidence 344444445555555554223333332211 12224577888888776543 4444 787766 234567777788999
Q ss_pred EEEe
Q 042146 189 RLWN 192 (262)
Q Consensus 189 ~i~d 192 (262)
.+|+
T Consensus 102 vly~ 105 (113)
T 3mez_B 102 VVYG 105 (113)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9986
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=73.07 E-value=6.9 Score=33.47 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=30.0
Q ss_pred ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec
Q 042146 102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140 (262)
Q Consensus 102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 140 (262)
.|.++.+ +..++++-+.|.++|+|++++++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 478999999999999999999998877654
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=71.51 E-value=13 Score=31.88 Aligned_cols=30 Identities=17% Similarity=0.573 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSG 204 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 204 (262)
+..++++-+.|..+|+|++++++++....-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 456888888888888888888887777654
No 360
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=68.85 E-value=34 Score=25.65 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=46.6
Q ss_pred eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146 81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM 156 (262)
Q Consensus 81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (262)
.|+..++...+... +... . +..++++++.|+-.. ....|...++.... ...+..+.. ..++|+++.
T Consensus 89 ~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 89 SLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE
T ss_pred eEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE
Confidence 46666666554322 2211 1 236777888877554 34567777776433 334433332 456777887
Q ss_pred EEEEeC-CCeEEEEeCCC
Q 042146 157 IVTSSY-DGLYRILDAST 173 (262)
Q Consensus 157 l~~~~~-dg~i~~~d~~~ 173 (262)
|+-.+. ...|...++..
T Consensus 159 iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEECTTTCCEEEEETTT
T ss_pred EEEEeCCCceEEEEECCC
Confidence 776554 56677776654
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.67 E-value=15 Score=30.72 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=15.0
Q ss_pred cccceEEEEEcCCCCeEEEe
Q 042146 227 HRDPVISVASHPAKNIIASG 246 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~ 246 (262)
....++.++|+||++.|+..
T Consensus 529 ~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 529 IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TTCEEEEEEECTTSSEEEEE
T ss_pred CCccCcCeeECCCCCEEEEE
Confidence 34578888888888877665
No 362
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=67.21 E-value=43 Score=26.11 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=44.9
Q ss_pred cceEEEEEeC---CCCEEEeecCCCeEEEEECCCC-------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 101 NYVFCINFNP---QSNRIVSDTFNETIRIWDIKTG-------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 101 ~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..|.++..-+ ++.+++.++..|.++.-.+..- .....+.. .+.+..+........++..+..|.+..|.
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence 4555554432 4568999999999999876432 22222322 34555555555556788888888888887
Q ss_pred CCC
Q 042146 171 AST 173 (262)
Q Consensus 171 ~~~ 173 (262)
...
T Consensus 178 ~~~ 180 (370)
T 3l6v_A 178 EST 180 (370)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
No 363
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=62.05 E-value=25 Score=21.72 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=29.2
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC----CCccEEEEEcCCCeEEEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST----PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~----~~~~~l~~~~~dg~i~i~d 192 (262)
..+.+..+|++++... ++...+|.-.. ..+.+.+.--.||.+.+|+
T Consensus 52 ~~l~l~~dGNLVl~~~-~~~~~vW~S~t~~~~~~~~~~l~Lq~dGNlvly~ 101 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSA-NSNTPVWVYPRSVNTVRGNYAATLGPDQHVTIYG 101 (111)
T ss_dssp CEEEECTTSCEEEECS-SCSSCSEEESSSCCCCSSCCEEEECTTSCEEEEC
T ss_pred EEEEEcCCCcEEEEeC-CCCEEEEEeccccCCCCcCEEEEECCCCeEEEec
Confidence 4567777887666533 34444675442 2345677777889999886
No 364
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=61.31 E-value=25 Score=21.47 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=28.5
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeEEEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i~i~d 192 (262)
..+.+..+|++++... ++. .+|...+ ..+.+.+.--.||.+.+|+
T Consensus 53 ~~L~l~~dGnLvL~d~-~~~-~vWss~t~~~~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDS-SGR-SLWASHSTRGSGNYILILQDDGNVIIYG 99 (105)
T ss_dssp CEEEECTTSCEEEECT-TCC-EEEECCCCCCSSCEEEEECTTSCEEEEE
T ss_pred EEEEEeCCccEEEECC-CcE-EEEEecCCCCCCCEEEEEeCCCeEEEEC
Confidence 3577888888766533 333 3676654 3345666666788888875
No 365
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=59.14 E-value=72 Score=26.02 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=41.8
Q ss_pred ceEEEEEeC----CCC--EEEeecCCCeEEEEEC-CCCe-------eeeeeec--CCCCeeeEEEccCCCEEEEEeCCCe
Q 042146 102 YVFCINFNP----QSN--RIVSDTFNETIRIWDI-KTGK-------CLKVLPA--HSDPVTAIDFNRDGTMIVTSSYDGL 165 (262)
Q Consensus 102 ~v~~~~~~~----~~~--~l~~~~~dg~i~vwd~-~~~~-------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~ 165 (262)
..+.|+... +++ .++.|+.+|.|.-.-+ ..+. .+.++.. ...+|..|.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 467776653 233 4778899997654333 2211 2223332 3578999999999889988888776
Q ss_pred EEE
Q 042146 166 YRI 168 (262)
Q Consensus 166 i~~ 168 (262)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.86 E-value=66 Score=24.25 Aligned_cols=113 Identities=8% Similarity=0.043 Sum_probs=56.3
Q ss_pred ccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCC
Q 042146 32 SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ 111 (262)
Q Consensus 32 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (262)
-|+..++++.+.+|.|+--.+......... ..+.....++.. +.+..+.....
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~--------------------------~~g~~~~~lke~-D~l~~~~~~~~ 57 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTG--------------------------GKGLSSFDLNDG-DEIVIALCVNT 57 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSS--------------------------CCCEECCCCCTT-CCEEEEEEEET
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccC--------------------------CCCceecccCCC-CEEEEEEEECC
Confidence 356778999999999998765432111000 001111122322 23333333334
Q ss_pred CCEEEeecCCCeEEEEECCC---C------ee---eeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCC
Q 042146 112 SNRIVSDTFNETIRIWDIKT---G------KC---LKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDAS 172 (262)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~---~------~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~ 172 (262)
...++..+..|.++-..... . .+ .-.+. ....|.++...+ +..+++..+..|.++...+.
T Consensus 58 ~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~ 132 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFEST 132 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHH
Confidence 45566667788776665431 1 11 01122 123444443332 35677888888888877664
No 367
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=53.42 E-value=47 Score=27.46 Aligned_cols=67 Identities=7% Similarity=0.074 Sum_probs=42.4
Q ss_pred ceEEEEEeCC--CCEEEeecCCCeEEEEECCCC----eeeeeee--cCCCCee-eEEEccCCCEEEEEeCCCeEEE
Q 042146 102 YVFCINFNPQ--SNRIVSDTFNETIRIWDIKTG----KCLKVLP--AHSDPVT-AIDFNRDGTMIVTSSYDGLYRI 168 (262)
Q Consensus 102 ~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~----~~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~ 168 (262)
..++++.... ...++.|+.+|.|.-..+... ..+.++. ....+|. .|.++++..+|++++..+.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4666766653 345778999998765544322 1223332 2245785 8999998888888887665544
No 368
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=51.95 E-value=55 Score=26.72 Aligned_cols=28 Identities=4% Similarity=0.128 Sum_probs=22.8
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
...+|..|.+++++..|..++ +++.++|
T Consensus 460 ~~~pI~~m~l~~~~~~Lyv~s--~~~V~~v 487 (495)
T 1q47_A 460 EPTTISAMELSTKQQQLYIGS--TAGVAQL 487 (495)
T ss_dssp SCCCCCEEEEETTTTEEEEEB--SSCEEEE
T ss_pred CCCccceEEEcCCCCEEEEEE--CCeEEEE
Confidence 346889999999999999998 6666654
No 369
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=51.63 E-value=85 Score=24.58 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=55.1
Q ss_pred eEEEEecCCC--ccceeccc------CCcceEEEEEe---CC----CCEEEee-cCCCeEEEEECCCCeeeeeee----c
Q 042146 81 TIRLWDVPTA--TSLKTLIG------HTNYVFCINFN---PQ----SNRIVSD-TFNETIRIWDIKTGKCLKVLP----A 140 (262)
Q Consensus 81 ~i~v~d~~~~--~~~~~~~~------~~~~v~~~~~~---~~----~~~l~~~-~~dg~i~vwd~~~~~~~~~~~----~ 140 (262)
.|.+||+.+. +.++.+.- ....+..+++. |. +.+++.+ +..+-|.|+|+.+++.-+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 7899999998 77765431 23568889988 22 3344433 346789999999876544331 0
Q ss_pred --------------CCCCeeeEEEccC----CCEEEEEeCCC
Q 042146 141 --------------HSDPVTAIDFNRD----GTMIVTSSYDG 164 (262)
Q Consensus 141 --------------~~~~v~~~~~~~~----~~~l~~~~~dg 164 (262)
-...+..|+++|+ ++.|+-....+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 0246888999987 67676665444
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=51.44 E-value=78 Score=24.10 Aligned_cols=119 Identities=9% Similarity=0.062 Sum_probs=68.8
Q ss_pred CceEEEEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146 24 RAVSYVKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT 100 (262)
Q Consensus 24 ~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~ 100 (262)
..|.++..-+ +..+++.++.+|.++.-.+....... ..+.....++. .
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~----------------------------r~G~~~i~lke-~ 145 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR----------------------------SGGIVAVNLRD-N 145 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC----------------------------SSCEESCBCCT-T
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc----------------------------cCceEEEEECC-C
Confidence 4455554333 57789999999999988765421110 01222223333 2
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEECC--CC---------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIK--TG---------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
+.+..+........++..+..|.+..+... .- ...-.+. ....|.++...+++..++..+..|.++.-
T Consensus 146 D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 146 DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRT 224 (327)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEE
Confidence 334444444445667777788888877665 21 1111222 24457776666666788888889988877
Q ss_pred eCC
Q 042146 170 DAS 172 (262)
Q Consensus 170 d~~ 172 (262)
.+.
T Consensus 225 ~l~ 227 (327)
T 3uc1_A 225 AIE 227 (327)
T ss_dssp EGG
T ss_pred EHH
Confidence 654
No 371
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=50.94 E-value=67 Score=27.38 Aligned_cols=28 Identities=4% Similarity=0.128 Sum_probs=23.0
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
...+|..|.+++++..|+.++ +++.++|
T Consensus 468 ~~~pI~~L~ld~~~~~LYV~t--~~~V~kV 495 (667)
T 4gz8_A 468 EPTTISAMELSTKQQQLYIGS--TAGVAQL 495 (667)
T ss_dssp SCCCCCEEEEETTTTEEEEEB--SSCEEEE
T ss_pred CCceeeeEEEcCCCCEEEEEE--CCEEEEE
Confidence 456889999999999999998 6776664
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.50 E-value=73 Score=23.50 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=37.9
Q ss_pred cceEEEEEeCCCCEEEeecCCCeEEEEE---CCCCeeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEeC
Q 042146 101 NYVFCINFNPQSNRIVSDTFNETIRIWD---IKTGKCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDA 171 (262)
Q Consensus 101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~ 171 (262)
+.+..+........++.-++.|.++--. +...+....+. ....|..+.. + +...++..+.+|.++-..+
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 3444444444444555556677666433 32221111132 3455666644 4 4678899999999988764
No 373
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=47.64 E-value=82 Score=23.23 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=76.6
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCcc---ccCCccccccceeEEEEecCCCccceeccc
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQK---FTGHEQGISDLATIRLWDVPTATSLKTLIG 98 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~---~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~ 98 (262)
..|..++....-. ++. . ||.|..|-........... ...+.. -..|...+. .+.|+.|-......+..-..
T Consensus 24 ~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~ 99 (282)
T 3qhy_B 24 SGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAE 99 (282)
T ss_dssp SSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG
T ss_pred CCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcc
Confidence 3577777654322 333 4 8999999754422211100 001111 112222332 44677776543222211111
Q ss_pred CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146 99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----- 173 (262)
Q Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 173 (262)
-...|..++.-.+ ..+.-. +|.|+.|-....-.+-........|..++.... +.+.-. ||.+..|-...
T Consensus 100 ~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 100 ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS
T ss_pred cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC
Confidence 1346777776643 333334 899999975432111111112345666655433 222223 78888886543
Q ss_pred --------------CCccEEEEEcCCCeEEEEecCC
Q 042146 174 --------------PNGKFILVGTLDNTLRLWNYST 195 (262)
Q Consensus 174 --------------~~~~~l~~~~~dg~i~i~d~~~ 195 (262)
-....++. .+|.|+.|-...
T Consensus 174 ~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 174 VPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp CCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred CceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 12233333 588888886543
No 374
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=46.56 E-value=1e+02 Score=24.00 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.9
Q ss_pred ccEEEEEcCCCeEEEEecC
Q 042146 176 GKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 176 ~~~l~~~~~dg~i~i~d~~ 194 (262)
+.+|+.++..|.++.-.+.
T Consensus 113 ~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 113 NRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp TCEEEEEETTSEEEEEEGG
T ss_pred CcEEEEEeCCCeEEEeEHH
Confidence 4578888888888876654
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=45.66 E-value=94 Score=23.34 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=13.3
Q ss_pred CccEEEEEcCCCeEEEEecC
Q 042146 175 NGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~ 194 (262)
++.+++..+.+|.++.-.+.
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGG
T ss_pred CCcEEEEEeCCCeEEEEEHH
Confidence 34567777777877776553
No 376
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=45.23 E-value=87 Score=22.82 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=14.7
Q ss_pred CccEEEEEcCCCeEEEEecC
Q 042146 175 NGKFILVGTLDNTLRLWNYS 194 (262)
Q Consensus 175 ~~~~l~~~~~dg~i~i~d~~ 194 (262)
++.+|+.++..|.++...+.
T Consensus 94 ~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 94 DDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp TTCEEEEEBTTSEEEEEEGG
T ss_pred CCCEEEEEeCCCeEEEeEHH
Confidence 34567788888888887664
No 377
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=42.90 E-value=98 Score=22.79 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=44.4
Q ss_pred ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146 79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158 (262)
Q Consensus 79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (262)
.+.|+.|-......+..-......|..++.-.... ++. . ||.|+.|-....-.+-.-..-...|..++...+ +.+
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~ 115 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY 115 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEE
Confidence 34677776544322221111223566666653322 222 4 899999975432111111111345777766533 333
Q ss_pred EEeCCCeEEEEeCCC
Q 042146 159 TSSYDGLYRILDAST 173 (262)
Q Consensus 159 ~~~~dg~i~~~d~~~ 173 (262)
.-. ||.|..|-...
T Consensus 116 al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 116 ALK-DGKVIAWGDDS 129 (282)
T ss_dssp EEE-TTEEEEEECCT
T ss_pred EEe-CCeEEEecCCC
Confidence 344 89999997544
No 378
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=40.68 E-value=1.7e+02 Score=25.02 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=86.4
Q ss_pred CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccccCCccc--cccceeEEEEecCCCccceecc--
Q 042146 24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKFTGHEQG--ISDLATIRLWDVPTATSLKTLI-- 97 (262)
Q Consensus 24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~--v~~~~~i~v~d~~~~~~~~~~~-- 97 (262)
..|.++.-..++. |..|+.+| +..||........... ...+..+...... +....-|..+|..+++.. .+.
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~ 139 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTR 139 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHH
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccC
Confidence 4688887777664 55555555 7788876532211100 0111111111111 111114666776554432 220
Q ss_pred ---cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ec----CCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146 98 ---GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PA----HSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 98 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
.....|.++...+++.+.+. +.. -|..++..+++..... .. ....|.++...+++..|..|+. +-+..+
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~ 216 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQY 216 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEE
Confidence 12346888888877776654 444 4778888766532211 11 1224788877777766666654 446667
Q ss_pred eCCC-------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146 170 DAST-------------------PNGKFILVGTLDNTLRLWNYSTRKI 198 (262)
Q Consensus 170 d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~ 198 (262)
|... .....|..|+. +-+.+++..+++.
T Consensus 217 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 217 FPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL 263 (758)
T ss_dssp ETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC
T ss_pred cCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE
Confidence 6543 11233444554 3577777765543
No 379
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=40.63 E-value=66 Score=20.11 Aligned_cols=45 Identities=16% Similarity=0.404 Sum_probs=26.8
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeEEEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i~i~d 192 (262)
..+.+..+|++++.. .++. .+|.-.. ..+.+.+.-..+|.+.+|+
T Consensus 63 ~~l~l~~dGNLVl~d-~~~~-~lW~S~~~~~~g~~~l~l~~~Gnlvl~~ 109 (119)
T 1b2p_A 63 CRAVLQPDGVLVVIT-NENV-TVWQSPVAGKAGHYVLVLQPDRNVVIYG 109 (119)
T ss_dssp CEEEECTTSCEEEEC-TTCC-EEEECSCCCCSSCEEEEECTTSCEEEEE
T ss_pred eEEEEccCCEEEEEe-CCCc-EEEcCCCCCCCCCEEEEEECCCcEEEEC
Confidence 356677788766653 3344 4776544 2345555556677777776
No 380
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=39.55 E-value=1.8e+02 Score=24.86 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=42.3
Q ss_pred ceEEEEEeC----CC--CEEEeecCCCeEE-EEECCCCe-------eeeeee--cCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146 102 YVFCINFNP----QS--NRIVSDTFNETIR-IWDIKTGK-------CLKVLP--AHSDPVTAIDFNRDGTMIVTSSYDGL 165 (262)
Q Consensus 102 ~v~~~~~~~----~~--~~l~~~~~dg~i~-vwd~~~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 165 (262)
..+.|+.+. ++ ..++.|+.+|.|. +.-...+. .+.++. ....+|..|.++++..+|++++.++.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V 492 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 492 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEE
Confidence 355666532 33 3577899999865 33222111 222222 34668999999999999999998887
Q ss_pred EEE
Q 042146 166 YRI 168 (262)
Q Consensus 166 i~~ 168 (262)
+++
T Consensus 493 ~kV 495 (667)
T 4gz8_A 493 AQL 495 (667)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 381
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=39.13 E-value=66 Score=19.70 Aligned_cols=45 Identities=13% Similarity=0.369 Sum_probs=26.4
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeEEEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i~i~d 192 (262)
..+.+..+|++++... ++. .+|.-.. ..+.+.+.-..||.+.+|+
T Consensus 53 ~~l~l~~dGNLVl~~~-~~~-~~W~S~t~~~~g~~~l~l~~dGnlvl~~ 99 (110)
T 3a0c_A 53 CRLTLHNNGNLVIYDQ-SNR-VIWQTKTNGKEDHYVLVLQQDRNVVIYG 99 (110)
T ss_dssp CEEEECTTSCEEEECT-TCC-EEEECCCCCSSSCCEEEECTTSCEEEEC
T ss_pred EEEEEeCCCCEEEECC-CCc-EEEecCCCCCCCCEEEEEeCCccEEEEC
Confidence 3566777887666543 343 4676544 2345555556677777765
No 382
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=38.98 E-value=60 Score=26.84 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=20.4
Q ss_pred ccceE-EEEEcCCCCeEEEeeecCCCcEEE
Q 042146 228 RDPVI-SVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 228 ~~~v~-~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
..+|. .|.+++++..|+.++ +++.++|
T Consensus 449 ~~pv~~~l~~~~~~~~Lyv~s--~~~V~kv 476 (539)
T 3al9_A 449 GSPILRDMAFSINQLYLYVMS--ERQVTRV 476 (539)
T ss_dssp CCCCCSCCEECTTSSEEEEEC--SSEEEEE
T ss_pred CCccccceEEccCCCeEEEEe--cccccee
Confidence 45775 889999999999988 5555554
No 383
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=38.85 E-value=1.7e+02 Score=24.39 Aligned_cols=68 Identities=6% Similarity=0.042 Sum_probs=43.5
Q ss_pred ceEEEEEeC----C--CCEEEeecCCCeEE-EEECCC-------Ceeeeeeec-----------CCCCeeeEEEccCCCE
Q 042146 102 YVFCINFNP----Q--SNRIVSDTFNETIR-IWDIKT-------GKCLKVLPA-----------HSDPVTAIDFNRDGTM 156 (262)
Q Consensus 102 ~v~~~~~~~----~--~~~l~~~~~dg~i~-vwd~~~-------~~~~~~~~~-----------~~~~v~~~~~~~~~~~ 156 (262)
..+.|+++. + ...++.|+.+|.|. +..... ...+.++.. ...+|..|.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 467777765 2 24577899999874 433221 112222221 1457889999998889
Q ss_pred EEEEeCCCeEEEE
Q 042146 157 IVTSSYDGLYRIL 169 (262)
Q Consensus 157 l~~~~~dg~i~~~ 169 (262)
|++++.++.+++-
T Consensus 484 LYV~s~~~V~qVP 496 (565)
T 3oky_B 484 LYVAFSTCVIKVP 496 (565)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEEecCeEEEee
Confidence 9998888777654
No 384
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=38.25 E-value=1.4e+02 Score=24.98 Aligned_cols=68 Identities=7% Similarity=0.004 Sum_probs=42.9
Q ss_pred ceEEEEEe----CCC---CEEEeecCCCeEEEEEC-CCC----e-eeeeee--cCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146 102 YVFCINFN----PQS---NRIVSDTFNETIRIWDI-KTG----K-CLKVLP--AHSDPVTAIDFNRDGTMIVTSSYDGLY 166 (262)
Q Consensus 102 ~v~~~~~~----~~~---~~l~~~~~dg~i~vwd~-~~~----~-~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i 166 (262)
..+.|+++ .++ ..++.|+.+|.|.-.-+ ..+ . .+.++. ....+|..|.++++...|++++.++.+
T Consensus 363 ~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~ 442 (590)
T 3nvq_A 363 HYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVS 442 (590)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEE
T ss_pred cEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEE
Confidence 35556554 233 35778888998764333 222 1 122232 245689999999998999998888766
Q ss_pred EEE
Q 042146 167 RIL 169 (262)
Q Consensus 167 ~~~ 169 (262)
++-
T Consensus 443 qVP 445 (590)
T 3nvq_A 443 QVP 445 (590)
T ss_dssp EEE
T ss_pred Ecc
Confidence 654
No 385
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=36.70 E-value=1.9e+02 Score=24.71 Aligned_cols=67 Identities=9% Similarity=0.123 Sum_probs=42.8
Q ss_pred ceEEEEEe----CCCC---EEEeecCCCeEE-EEECCCCe-eeeeee--cCCCCeeeEEEccCC--CEEEEEeCCCeEEE
Q 042146 102 YVFCINFN----PQSN---RIVSDTFNETIR-IWDIKTGK-CLKVLP--AHSDPVTAIDFNRDG--TMIVTSSYDGLYRI 168 (262)
Q Consensus 102 ~v~~~~~~----~~~~---~l~~~~~dg~i~-vwd~~~~~-~~~~~~--~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~ 168 (262)
..+.|+.. ++++ .++.|+.+|.|. +....... .+.++. ....+|..|.++++. .+|++++..+.+++
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 35667664 2333 578899999764 33443332 222222 235689999999987 88999888776655
No 386
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=36.23 E-value=1.4e+02 Score=25.03 Aligned_cols=28 Identities=0% Similarity=0.063 Sum_probs=21.7
Q ss_pred cccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 227 HRDPVISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
...+|..+.++++...|..++ .++.++|
T Consensus 417 ~~~pi~~L~ls~~~~~LyV~s--~~~V~qV 444 (590)
T 3nvq_A 417 RAAAIQTMSLDAERRKLYVSS--QWEVSQV 444 (590)
T ss_dssp SCCCCCEEEEETTTTEEEEEC--SSEEEEE
T ss_pred CCCceeeEEEcCCCCEEEEEe--cceEEEc
Confidence 346788999999988888887 6666554
No 387
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=35.84 E-value=75 Score=19.38 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=29.5
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCCC--CccEEEEEcCCCeEEEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDASTP--NGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~l~~~~~dg~i~i~d 192 (262)
..+.+..+|++++... ++. .+|..... .+.+.+.-..||.+.+|+
T Consensus 52 ~~l~l~~dGNLvl~~~-~~~-~~W~S~t~~~~~~~~~~L~ddGNlvly~ 98 (109)
T 3dzw_A 52 CHLSMQSDGNLVVYSP-RNN-PIWASNTGGENGNYVCVLQKDRNVVIYG 98 (109)
T ss_dssp CEEEECTTSCEEEECT-TSC-EEEECCCCCSSSCEEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCEEEECC-CCC-EEEECCCCCCCCCEEEEEeCCCEEEEEC
Confidence 4567778888766533 343 47866542 234667777888888887
No 388
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=33.21 E-value=1.4e+02 Score=24.60 Aligned_cols=68 Identities=4% Similarity=0.003 Sum_probs=43.1
Q ss_pred ceEEEEEeC--CCCEEEeecCCCeEEEEECC-CC--eeeeeee-cCCCCe-eeEEEccCCCEEEEEeCCCeEEEE
Q 042146 102 YVFCINFNP--QSNRIVSDTFNETIRIWDIK-TG--KCLKVLP-AHSDPV-TAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 102 ~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~-~~--~~~~~~~-~~~~~v-~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
..+.|+... ....++.|+.+|.|.-.-+. .. ..+.++. ....+| ..|.++++...|++++..+.+++-
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 467777765 23346678899987644433 21 1222222 234577 489999988889888887776653
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=32.40 E-value=1.2e+02 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=15.5
Q ss_pred cceEEEEEcCCCCeEEEee
Q 042146 229 DPVISVASHPAKNIIASGA 247 (262)
Q Consensus 229 ~~v~~~~~~p~~~~l~~~~ 247 (262)
..++.++|+||++.|+.+-
T Consensus 531 aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 531 CEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEEECTTSSEEEEEE
T ss_pred ccccCCEECCCCCEEEEEE
Confidence 4688999999999887764
No 390
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=31.39 E-value=1.8e+02 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=17.4
Q ss_pred cceEEEEEeC-C-CCEEEeecCCCeEEEE
Q 042146 101 NYVFCINFNP-Q-SNRIVSDTFNETIRIW 127 (262)
Q Consensus 101 ~~v~~~~~~~-~-~~~l~~~~~dg~i~vw 127 (262)
..|.++++.| + ...++++...+-|...
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 3577888887 3 5566666656655554
No 391
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=31.17 E-value=1.9e+02 Score=22.64 Aligned_cols=104 Identities=10% Similarity=0.082 Sum_probs=56.4
Q ss_pred eEEEEECCCC--eeeeeeecC------CCCeeeEEEc---cCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEE
Q 042146 123 TIRIWDIKTG--KCLKVLPAH------SDPVTAIDFN---RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLW 191 (262)
Q Consensus 123 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~ 191 (262)
+|.+||+.+. +.++.+.-. .+.+..+++. |.+ .+.++.+++ +-+..+.|.|+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~-----~c~~~~aYI------------tD~~~~gLIVy 186 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG-----DCSETFVYI------------TNFLRGALFIY 186 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT-----TSCSEEEEE------------EETTTTEEEEE
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC-----CCCccEEEE------------EcCCCCcEEEE
Confidence 6889999998 888776532 2345556655 111 011222222 22245678889
Q ss_pred ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC----CCeEEEee
Q 042146 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA----KNIIASGA 247 (262)
Q Consensus 192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~ 247 (262)
|+.+++.-+.+..+.... ....+...+..+. -...|..|+.+|+ ++.|.-..
T Consensus 187 dl~~~~swRv~~~~~~pd--~~~~~~i~G~~~~--~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 187 DHKKQDSWNVTHPTFKAE--RPTKFDYGGKEYE--FKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp ETTTTEEEEEECGGGSCC--SCEEEEETTEEEE--ECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred ECCCCcEEEEccCCCccc--cCcceEECCEEeE--eccCceEEEecCCcCCCCeEEEEEE
Confidence 998887766553211110 0011111111110 2457999999998 77777665
No 392
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=30.92 E-value=2.2e+02 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=21.3
Q ss_pred cccceEEEEEcCCC--CeEEEeeecCCCcEEE
Q 042146 227 HRDPVISVASHPAK--NIIASGALDNDRTMKI 256 (262)
Q Consensus 227 ~~~~v~~~~~~p~~--~~l~~~~~d~d~~i~i 256 (262)
...+|..|.+++++ ..|+.++ ..+.++|
T Consensus 448 ~~~pI~~l~l~~~~~~~~Lyv~s--~~~V~~v 477 (663)
T 1olz_A 448 DFEPVQTLLLSSKKGNRFVYAGS--NSGVVQA 477 (663)
T ss_dssp TCCCCCEEEECCSSSSCEEEEEC--SSCEEEE
T ss_pred CCCcceeeEeccCCCccEEEEEE--cCeEEEE
Confidence 45678889999988 8888887 6665554
No 393
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=26.04 E-value=1.2e+02 Score=18.56 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=30.0
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeEEEEe
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTLRLWN 192 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i~i~d 192 (262)
..+.+..+|++++... ++. .+|.-.. ..+.+.+.=..||.+.+|+
T Consensus 56 ~~l~l~~dGNLvl~d~-~~~-~iW~S~t~~~~~~~~~~L~~dGNlvly~ 102 (110)
T 3r0e_B 56 CFLRLNHKGELIIKDD-DFK-TIWSSRSSSKQGEYVLILQDDGFGVIYG 102 (110)
T ss_dssp CEEEECTTSCEEEECT-TCC-EEEECCCCCSSSCCEEEECTTSCEEEEC
T ss_pred EEEEEeCCCcEEEEeC-CCC-EEEEcCCcCCCCCEEEEEcCCccEEEec
Confidence 3567778888766533 444 3787655 3344667777889888887
No 394
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=25.13 E-value=1.3e+02 Score=18.72 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=23.1
Q ss_pred eeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeEEEEec
Q 042146 146 TAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTLRLWNY 193 (262)
Q Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i~i~d~ 193 (262)
..+.|.++|++++.-. + -.+|.... +.....+.-..||.+.++|-
T Consensus 32 ~~L~~~~dgnlvly~~--~-~~vW~sn~~~~~~~~~l~l~~dGNLVl~d~ 78 (119)
T 1b2p_A 32 YRFIMQTDCNLVLYDN--N-NPIWATNTGGLGNGCRAVLQPDGVLVVITN 78 (119)
T ss_dssp EEEEECTTSCEEEEET--T-EEEEECCCTTSCSSCEEEECTTSCEEEECT
T ss_pred EEEEEecCCCEEEEEC--C-EEEEeCCCccCCCceEEEEccCCEEEEEeC
Confidence 4455555555443221 2 35666544 22223444556777877773
No 395
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=24.65 E-value=2.3e+02 Score=21.49 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=46.1
Q ss_pred cceEEEEEeC---CCCEEEeecCCCeEEEEECCCCe-------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146 101 NYVFCINFNP---QSNRIVSDTFNETIRIWDIKTGK-------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170 (262)
Q Consensus 101 ~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 170 (262)
..|..+..-+ +..+++..+.+|.|+.-.+..-. ....++. .+.+..+........++..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 4454443333 57789999999999998875422 1222332 34555555555566788888899988887
Q ss_pred CC
Q 042146 171 AS 172 (262)
Q Consensus 171 ~~ 172 (262)
..
T Consensus 174 ~~ 175 (327)
T 3uc1_A 174 AT 175 (327)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 396
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=22.75 E-value=3.2e+02 Score=23.45 Aligned_cols=67 Identities=9% Similarity=0.124 Sum_probs=41.8
Q ss_pred eEEEEEeC--CCCEEEeecCCCeEEEEECCC----Ceeeeeeec--CCCCe-eeEEEccCCCEEEEEeCCCeEEEE
Q 042146 103 VFCINFNP--QSNRIVSDTFNETIRIWDIKT----GKCLKVLPA--HSDPV-TAIDFNRDGTMIVTSSYDGLYRIL 169 (262)
Q Consensus 103 v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~--~~~~v-~~~~~~~~~~~l~~~~~dg~i~~~ 169 (262)
.+.++... +...++.|+.+|.|.-.-+.. ...+.++.. ...+| ..|.++++...|++++..+.+++-
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qvP 476 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVP 476 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEEE
Confidence 44455544 334577899999876544432 122333322 34566 689999988899998887766553
No 397
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=22.62 E-value=2.3e+02 Score=24.33 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=19.6
Q ss_pred ccce-EEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 228 RDPV-ISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 228 ~~~v-~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
..+| ..+.++++...|+.++ ..+.++|
T Consensus 448 ~~pI~~~l~l~~~~~~Lyv~s--~~~V~qv 475 (681)
T 3oky_A 448 GSPILRDMAFSINQLYLYVMS--ERQVTRV 475 (681)
T ss_dssp CCCCCSCCEECTTSSEEEEEC--SSEEEEE
T ss_pred CCceeeeeEEcCCCCEEEEEe--cCEEEEE
Confidence 3455 6888999888888887 5655554
No 398
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.52 E-value=4e+02 Score=23.15 Aligned_cols=113 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc---
Q 042146 23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--- 98 (262)
Q Consensus 23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--- 98 (262)
.+.|.+|+++|. ...+++++..+.|...+-.. .+.+.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG---------------------------------~tW~~~~~~~~~~~ 60 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT---------------------------------SKWIPLNDFIEAQD 60 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT---------------------------------TEEEESCTTCCGGG
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC---------------------------------CCeeECccCCCccc
Q ss_pred -CCcceEEEEEeC-CCCEEEeecCCCe----EEEEECCCCeeeeeeecCCCC----------eeeEEEcc-CCCEEEEEe
Q 042146 99 -HTNYVFCINFNP-QSNRIVSDTFNET----IRIWDIKTGKCLKVLPAHSDP----------VTAIDFNR-DGTMIVTSS 161 (262)
Q Consensus 99 -~~~~v~~~~~~~-~~~~l~~~~~dg~----i~vwd~~~~~~~~~~~~~~~~----------v~~~~~~~-~~~~l~~~~ 161 (262)
....+.+|+++| +.+.++++..... -.||--..+-.-......... +..++++| +...++.+.
T Consensus 61 ~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~ 140 (789)
T 1sqj_A 61 MNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT 140 (789)
T ss_dssp GGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred ccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Q ss_pred CCCeEEE
Q 042146 162 YDGLYRI 168 (262)
Q Consensus 162 ~dg~i~~ 168 (262)
..+.|..
T Consensus 141 ~~~gl~~ 147 (789)
T 1sqj_A 141 RTEGIWK 147 (789)
T ss_dssp SSSCEEE
T ss_pred ccCCEEE
No 399
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.86 E-value=1.6e+02 Score=24.27 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=21.2
Q ss_pred cccce-EEEEEcCCCCeEEEeeecCCCcEEE
Q 042146 227 HRDPV-ISVASHPAKNIIASGALDNDRTMKI 256 (262)
Q Consensus 227 ~~~~v-~~~~~~p~~~~l~~~~~d~d~~i~i 256 (262)
...+| ..|.++++...|+.++ ..+.++|
T Consensus 433 ~~~pi~~~l~l~~~~~~Lyv~s--~~~V~~v 461 (528)
T 3ol2_B 433 QGSAVSRDLTFDGTFEHLYVMT--QSTLLKV 461 (528)
T ss_dssp TTSCCCSCCEECTTSSEEEEEC--SSCEEEE
T ss_pred CCCcceeeEEEecCCCEEEEEe--CCEEEEE
Confidence 34567 4888999999998888 6776665
Done!