BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042147
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 134 bits (338), Expect = 1e-32, Method: Composition-based stats.
Identities = 57/69 (82%), Positives = 64/69 (92%)
Query: 1 VRPNAIALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGYHEYIRPLL 60
+RPNA++LVDAFNYTDHYLGS+LGRYDGNVYPKLYE AWKDPLN S + DG+HEYIRPLL
Sbjct: 615 LRPNAVSLVDAFNYTDHYLGSILGRYDGNVYPKLYEAAWKDPLNKSDIADGFHEYIRPLL 674
Query: 61 KQQLRNARL 69
KQQLR A+L
Sbjct: 675 KQQLRTAKL 683
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/64 (87%), Positives = 61/64 (95%)
Query: 1 VRPNAIALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGYHEYIRPLL 60
VRPNA+ALVDAFNYTDHYL SVLGRYDGNVYPKL+EEA KDPLNDSVVPDGY EY+RP+L
Sbjct: 596 VRPNAVALVDAFNYTDHYLNSVLGRYDGNVYPKLFEEALKDPLNDSVVPDGYQEYLRPVL 655
Query: 61 KQQL 64
+QQL
Sbjct: 656 QQQL 659
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 82.0 bits (201), Expect = 8e-17, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 1 VRPNAIALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGYHEYIRPL 59
+RPNA+ALVDAF++ D LGSVLGRYDGNVY L+E A K PLN + V + YH++++PL
Sbjct: 599 IRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESYHKHLKPL 657
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 20/57 (35%)
Query: 24 GRYDGNVYPKLYEEAWK--------------------DPLNDSVVPDGYHEYIRPLL 60
G Y +YPKL E W+ DP+N V+ DG + IR +
Sbjct: 75 GDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFV 131
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 20/57 (35%)
Query: 24 GRYDGNVYPKLYEEAWK--------------------DPLNDSVVPDGYHEYIRPLL 60
G Y +YPKL E W+ DP+N V+ DG + IR +
Sbjct: 75 GDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFV 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,562,088
Number of Sequences: 62578
Number of extensions: 102851
Number of successful extensions: 225
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)