Query 042147
Match_columns 69
No_of_seqs 100 out of 414
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w07_A Acyl-COA oxidase; oxido 99.9 1.2E-24 4.3E-29 167.3 2.9 63 1-63 596-658 (659)
2 2ddh_A Acyl-COA oxidase; beta 99.9 6.9E-24 2.4E-28 163.6 1.4 60 1-61 599-658 (661)
3 1wgn_A UBAP1, ubiquitin associ 60.9 1.4 4.6E-05 25.4 -0.5 39 3-42 20-58 (63)
4 1z3q_A Thaumatin-like protein; 21.6 22 0.00076 24.1 0.3 14 5-18 96-109 (200)
5 1du5_A Zeamatin; beta sandwich 21.2 23 0.00078 24.1 0.3 14 5-18 97-110 (206)
6 3cue_A Transport protein parti 20.7 82 0.0028 21.6 3.0 33 29-61 181-216 (219)
7 2vhk_A Thaumatin-I; kinetics o 20.4 24 0.00084 24.0 0.3 14 5-18 101-114 (206)
8 1aun_A PR-5D; antifungal prote 20.4 25 0.00084 24.0 0.3 14 5-18 98-111 (208)
9 2ahn_A Thaumatin-like protein; 19.8 26 0.00088 24.0 0.3 11 5-15 105-115 (222)
10 2j3w_A Sedlin, trafficking pro 16.7 1.3E+02 0.0044 18.4 3.1 33 29-62 103-138 (142)
No 1
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=99.89 E-value=1.2e-24 Score=167.30 Aligned_cols=63 Identities=87% Similarity=1.446 Sum_probs=60.9
Q ss_pred CccchhhhhhcccCCccchhccccccCCChHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhhh
Q 042147 1 VRPNAIALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGYHEYIRPLLKQQ 63 (69)
Q Consensus 1 lr~~av~LvDaf~~~D~~L~S~iG~~DG~vYe~l~~~~~~~p~n~~~~~~~~~~~l~p~l~~~ 63 (69)
|||+|++|||||++||++|+||||+|||+|||+||+|++++|+|+++++++|+++|+||++++
T Consensus 596 lrp~av~Lvdaf~~~d~~l~s~lg~~dg~vY~~l~~~~~~~p~n~~~~~~~~~~~~~~~~~~~ 658 (659)
T 1w07_A 596 VRPNAVALVDAFNYTDHYLNSVLGRYDGNVYPKLFEEALKDPLNDSVVPDGYQEYLRPVLQQQ 658 (659)
T ss_dssp HGGGHHHHHHTTCCCHHHHTCSTTCTTCCCHHHHHHHHHHSGGGGCSSCTTHHHHTHHHHTTC
T ss_pred HHHHHHHHHhhcCCCHHHhcChhhccCcHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHhcc
Confidence 699999999999999999999999999999999999999999999999999999999999764
No 2
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=99.87 E-value=6.9e-24 Score=163.59 Aligned_cols=60 Identities=60% Similarity=1.036 Sum_probs=55.8
Q ss_pred CccchhhhhhcccCCccchhccccccCCChHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHh
Q 042147 1 VRPNAIALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVVPDGYHEYIRPLLK 61 (69)
Q Consensus 1 lr~~av~LvDaf~~~D~~L~S~iG~~DG~vYe~l~~~~~~~p~n~~~~~~~~~~~l~p~l~ 61 (69)
|||+|++|||||++||++|+||||+|||+|||+||+|++++|+|++.+|+||+++|+|+ +
T Consensus 599 lrp~av~Lvdaf~~~d~~l~s~lg~~dg~vY~~l~~~~~~~p~n~~~~~~~~~~~l~~~-~ 658 (661)
T 2ddh_A 599 IRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESYHKHLKPL-Q 658 (661)
T ss_dssp HGGGHHHHHHTTCCCHHHHTCSTTCTTCCHHHHHHHHHHHSGGGSSSSCHHHHHHTC----
T ss_pred HHHHHHHHhhccCCChHHhCchhhccCCHHHHHHHHHHHhCCCCcCCCCccHHHHHhhh-h
Confidence 69999999999999999999999999999999999999999999888999999999998 5
No 3
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.94 E-value=1.4 Score=25.45 Aligned_cols=39 Identities=8% Similarity=0.199 Sum_probs=34.2
Q ss_pred cchhhhhhcccCCccchhccccccCCChHHHHHHHHHhCC
Q 042147 3 PNAIALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDP 42 (69)
Q Consensus 3 ~~av~LvDaf~~~D~~L~S~iG~~DG~vYe~l~~~~~~~p 42 (69)
+++|..+=++||+...-.-+|-..+||+ |+-.+|+..+|
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~Nv-ErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENI-EQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCH-HHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCH-HHHHHHHHhCC
Confidence 4567777799999999999999999999 99999998775
No 4
>1z3q_A Thaumatin-like protein; beta sandwich, antifungal protein; 1.70A {Musa acuminata}
Probab=21.59 E-value=22 Score=24.07 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.1
Q ss_pred hhhhhhcccCCccc
Q 042147 5 AIALVDAFNYTDHY 18 (69)
Q Consensus 5 av~LvDaf~~~D~~ 18 (69)
-|+|||.|++|=-+
T Consensus 96 DVSlVDGfNlP~~i 109 (200)
T 1z3q_A 96 DISLVDGFNVPMDF 109 (200)
T ss_dssp EEECTTCBSSCEEE
T ss_pred eeeeeccccCCeee
Confidence 58999999998443
No 5
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP: b.25.1.1
Probab=21.21 E-value=23 Score=24.09 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.0
Q ss_pred hhhhhhcccCCccc
Q 042147 5 AIALVDAFNYTDHY 18 (69)
Q Consensus 5 av~LvDaf~~~D~~ 18 (69)
-|+|||.|++|=.+
T Consensus 97 DVSlVDGfNlPm~i 110 (206)
T 1du5_A 97 DISLIDGFNVPMSF 110 (206)
T ss_dssp EEECTTCBCSCEEE
T ss_pred eeeeecccccCEEE
Confidence 58999999998333
No 6
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=20.75 E-value=82 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHhCCCCCCCCC---CCHHHHHHHHHh
Q 042147 29 NVYPKLYEEAWKDPLNDSVVP---DGYHEYIRPLLK 61 (69)
Q Consensus 29 ~vYe~l~~~~~~~p~n~~~~~---~~~~~~l~p~l~ 61 (69)
++||.|.+.+.+||+=..+-| +-|.+-++.+++
T Consensus 181 ~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~ 216 (219)
T 3cue_A 181 KVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216 (219)
T ss_dssp HHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHH
Confidence 789888888999987543222 236666666654
No 7
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=20.40 E-value=24 Score=23.97 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=11.0
Q ss_pred hhhhhhcccCCccc
Q 042147 5 AIALVDAFNYTDHY 18 (69)
Q Consensus 5 av~LvDaf~~~D~~ 18 (69)
-|+|||.|++|=.+
T Consensus 101 DVSlVDGfNlP~~i 114 (206)
T 2vhk_A 101 DISNIKGFNVPMNF 114 (206)
T ss_dssp EEECTTCBSSCEEE
T ss_pred eeeccCCccCCEEe
Confidence 48999999998433
No 8
>1aun_A PR-5D; antifungal protein, pathogenesis-related protein, osmotin, thaumatin-like protein; 1.80A {Nicotiana tabacum} SCOP: b.25.1.1 PDB: 2i0w_A 1pcv_A
Probab=20.37 E-value=25 Score=23.97 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=11.3
Q ss_pred hhhhhhcccCCccc
Q 042147 5 AIALVDAFNYTDHY 18 (69)
Q Consensus 5 av~LvDaf~~~D~~ 18 (69)
-|+|||.|++|=.+
T Consensus 98 DVSlVDGfNlP~~i 111 (208)
T 1aun_A 98 DISVIDGFNIPMSF 111 (208)
T ss_dssp EEECTTCBSSCEEE
T ss_pred eeecccCcccCeee
Confidence 58999999998444
No 9
>2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium}
Probab=19.76 E-value=26 Score=24.03 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=9.9
Q ss_pred hhhhhhcccCC
Q 042147 5 AIALVDAFNYT 15 (69)
Q Consensus 5 av~LvDaf~~~ 15 (69)
-|+|||.|++|
T Consensus 105 DVSlVDGfNlP 115 (222)
T 2ahn_A 105 DVSLVDGFNLP 115 (222)
T ss_dssp EEECTTCBSSC
T ss_pred eeecccccccc
Confidence 58999999998
No 10
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=16.74 E-value=1.3e+02 Score=18.42 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHhCCCCCCCCC---CCHHHHHHHHHhh
Q 042147 29 NVYPKLYEEAWKDPLNDSVVP---DGYHEYIRPLLKQ 62 (69)
Q Consensus 29 ~vYe~l~~~~~~~p~n~~~~~---~~~~~~l~p~l~~ 62 (69)
++|+-|.+.+. ||+-..+-| +.|.+-++.++++
T Consensus 103 ~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~ 138 (142)
T 2j3w_A 103 DVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKK 138 (142)
T ss_dssp HHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHH
Confidence 67887777777 987643322 2466666666654
Done!