BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042152
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 142/271 (52%), Gaps = 32/271 (11%)
Query: 1 MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFW--QRPGEIEGFGQNFVVSKEQKLDW 58
M L +HG+ + L+E+V +FF L +EE+EK+ Q G+I+G+G + +L+W
Sbjct: 80 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 139
Query: 59 GYGFTMFSLPALLRKPHLFPKLP------------------------LPSALKMDPNDSK 94
F + P R ++PK P L L ++P+ +
Sbjct: 140 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199
Query: 95 Q----FEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRV 150
+ E+ + M++NYYP C Q E +G HTD SALT +L N + GLQ+ +G V
Sbjct: 200 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 258
Query: 151 PVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEI-GPAP 209
K +PD+ ++++G+ LEIL+NG Y+SI+HR VN EK R+S+A F D + P P
Sbjct: 259 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 318
Query: 210 SLITPETPALFKKISFVDYTKGFLSRKLQEK 240
+++ E+PA F +F + + L K QE+
Sbjct: 319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 142/271 (52%), Gaps = 32/271 (11%)
Query: 1 MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFW--QRPGEIEGFGQNFVVSKEQKLDW 58
M L +HG+ + L+E+V +FF L +EE+EK+ Q G+I+G+G + +L+W
Sbjct: 79 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 138
Query: 59 GYGFTMFSLPALLRKPHLFPKLP------------------------LPSALKMDPNDSK 94
F + P R ++PK P L L ++P+ +
Sbjct: 139 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 198
Query: 95 Q----FEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRV 150
+ E+ + M++NYYP C Q E +G HTD SALT +L N + GLQ+ +G V
Sbjct: 199 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 257
Query: 151 PVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEI-GPAP 209
K +PD+ ++++G+ LEIL+NG Y+SI+HR VN EK R+S+A F D + P P
Sbjct: 258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 317
Query: 210 SLITPETPALFKKISFVDYTKGFLSRKLQEK 240
+++ E+PA F +F + + L K QE+
Sbjct: 318 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 32/270 (11%)
Query: 2 QLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFW--QRPGEIEGFGQNFVVSKEQKLDWG 59
L +HG+ + L E+V +FF L +EE+EK+ Q G+I+G+G + +L+W
Sbjct: 81 HLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWE 140
Query: 60 YGFTMFSLPALLRKPHLFPKLP------------------------LPSALKMDPNDSKQ 95
F + P R ++PK P L L ++P+ ++
Sbjct: 141 DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK 200
Query: 96 FEDGVQSM----RMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVP 151
G++ + ++NYYP C Q E +G HTD SALT +L N + GLQ+ +G V
Sbjct: 201 EVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVT 259
Query: 152 VKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEI-GPAPS 210
K +PD+ + ++G+ LEIL+NG Y+SI+HR VN EK R+S+A F D + P P
Sbjct: 260 AKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE 319
Query: 211 LITPETPALFKKISFVDYTKGFLSRKLQEK 240
++ E+PA F +F + + L K QE+
Sbjct: 320 XVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 104 RMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINV 163
+++ YP C + + + G HTD + +L Q +++ GLQ+ KDG + V + ++N+
Sbjct: 158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNL 217
Query: 164 GENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLI---TPETPALF 220
G+ LE++TNG Y+S+ HR + AR S A+FY+ D I PAP+L+ E ++
Sbjct: 218 GDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVY 277
Query: 221 KKISFVDYTKGFLSRKLQEK 240
K F DY K + K Q K
Sbjct: 278 PKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 97 EDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQI-KKDGMRVPVKTL 155
+DG +R+ +YP + + H D + +T+LL E GL++ +DG +P+
Sbjct: 165 QDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPP 223
Query: 156 PDTFIINVGENLEILTNGIYRSIVHRATVNSEK-----ARLSFATFYSMKLDGEIGPAPS 210
P +IN+G+ LE LTN + S VHR VN R S F D EI +
Sbjct: 224 PGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQN 282
Query: 211 LITPETPALFKKISFVDYTKGFLSRKLQE 239
+T E P + + D FL ++L+E
Sbjct: 283 CVTAENPDRYPESITADE---FLQQRLRE 308
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 118 IGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRS 177
+ F H D S +T+L Q N + LQ++ ++ ++IN G + LTN Y++
Sbjct: 209 LSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKA 267
Query: 178 IVHRAT-VNSEKARLSFATFYSMKLDGEIGP 207
+HR VN+E+ L F F ++ D I P
Sbjct: 268 PIHRVKWVNAERQSLPF--FVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 118 IGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRS 177
+ F H D S +T+L Q N + LQ++ ++ ++IN G + LTN Y++
Sbjct: 209 LSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKA 267
Query: 178 IVHRAT-VNSEKARLSFATFYSMKLDGEIGP 207
+HR VN+E+ L F F ++ D I P
Sbjct: 268 PIHRVKWVNAERQSLPF--FVNLGYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 103 MRMNYYP--SCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIK-KDGMRVPVKTLPDTF 159
+R+ +YP + ++ I H D + +T+L NE GLQ+K KDG + V +
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNI 210
Query: 160 IINVGENLEILTNGIYRSIVHRATVNSE-----KARLSFATFYSMKLDGEIGPAPSLITP 214
IIN+G+ L+ ++G + S HR +N E K+R+S F + P PS++
Sbjct: 211 IINIGDXLQEASDGYFPSTSHR-VINPEGTDKTKSRISLPLF--------LHPHPSVVLS 261
Query: 215 E 215
E
Sbjct: 262 E 262
>pdb|2EJB|A Chain A, Crystal Structure Of Phenylacrylic Acid Decarboxylase From
Aquifex Aeolicus
Length = 189
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 167 LEILTNGIYRSIVHRATVNSEKARLSF------ATFYSMKLDG--EIGPAPSLITPETPA 218
L + NGI ++++HR + K R+ A + + L+ +I ++ P +PA
Sbjct: 95 LSCIANGINKNLIHRVGEVALKERVPLVLLVREAPYNEIHLENMLKITRMGGVVVPASPA 154
Query: 219 LFKKISFVDYTKGFLSRKLQEKSNVDFMRIENEDSKSY 256
+ K +D F+ KL +D +RIE+ K +
Sbjct: 155 FYHKPQSIDDMINFVVGKL-----LDVLRIEHNLYKRW 187
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 134 QLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSF 193
Q EMD L+ DG+R+ P E+L++ N I + HR + + F
Sbjct: 62 QGKEMDSLRFLYDGIRIQADQTP--------EDLDMEDNDIIEA--HREQIGGGGETIKF 111
Query: 194 ATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDF 245
DG+IG +I P FVD S KL+ VD
Sbjct: 112 VA------DGDIGSGSVIIKP----------FVDMEHPETSIKLEMDQPVDL 147
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
Length = 390
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 126 GSALTILLQLNEMDGLQIKKDGMRVPVKTLPD 157
G A IL++LNE L ++ +G +PV +P+
Sbjct: 51 GYATEILVRLNEDGSLTVEDNGRGIPVDLMPE 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,761,437
Number of Sequences: 62578
Number of extensions: 318604
Number of successful extensions: 818
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 13
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)