BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042154
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 157 LGIEPDLVSYN---TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
LG +P +V+ N I A + NTLL+EM+++G R L T
Sbjct: 330 LGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATL 377
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 157 LGIEPDLVSYN---TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
LG +P +V+ N I A + NTLL+EM+++G R L T
Sbjct: 330 LGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATL 377
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 157 LGIEPDLVSYN---TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
LG +P +V+ N I A + NTLL+EM+++G R L T
Sbjct: 330 LGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATL 377
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 157 LGIEPDLVSYN---TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
LG +P +V+ N I A + NTLL+EM+++G R L T
Sbjct: 330 LGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATL 377
>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1.
pdb|4F5F|B Chain B, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1
Length = 406
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK-LGIEPDLV 164
A+F +A E + E L F+AL+ + ++ D V LF H GI+P L
Sbjct: 145 AIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVV--LFHGCCHNPTGIDPTLE 202
Query: 165 SYNTIIKAFVDKGSL 179
+ T+ + V+KG L
Sbjct: 203 QWQTLAQLSVEKGWL 217
>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4.
pdb|4F5I|B Chain B, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4
Length = 406
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK-LGIEPDLV 164
A+F +A E + E L F+AL+ + ++ D V LF H GI+P L
Sbjct: 145 AIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVV--LFHGCCHNPTGIDPTLE 202
Query: 165 SYNTIIKAFVDKGSL 179
+ T+ + V+KG L
Sbjct: 203 QWQTLAQLSVEKGWL 217
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 190 EKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249
++K + LD+ +N ++LG+ G F + + + + + P++ SY A L + + Q
Sbjct: 159 KRKLLTLDM--YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 250 KKALELVGEMRSKE 263
+E E S+E
Sbjct: 217 AGTIERCLEQMSQE 230
>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f
Mutation, With Bound Maleate
Length = 396
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 122 NCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK-LGIEPDLVSYNTIIKAFVDKGSL 179
+ E L F+AL+ + ++ D V LF H GI+P L + T+ + V+KG L
Sbjct: 151 DAENHTLDFDALINSLNEAQAGDVV--LFHGFCHNPTGIDPTLEQWQTLAQLSVEKGWL 207
>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase
Ech14, Northeast Structural Genomics Consortium Target
Or54
pdb|3UAK|B Chain B, Crystal Structure Of De Novo Designed Cysteine Esterase
Ech14, Northeast Structural Genomics Consortium Target
Or54
Length = 406
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK-LGIEPDLV 164
++F +A E + E L F+AL+ + ++ D V LF H GI+P L
Sbjct: 135 SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVV--LFTGCCHNPTGIDPTLE 192
Query: 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
+ T+ + V+KG L T Y+ +G+ D
Sbjct: 193 QWQTLAQLSVEKGWL-PLFTFFYQGFARGLEED 224
>pdb|2G39|A Chain A, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
pdb|2G39|B Chain B, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
Length = 497
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 39 RLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE 92
L+D FK+ D GR + G + +ANA IE E+ Y ++ ++
Sbjct: 239 HLIDFFKREVDAGRXSNSLGPLQAGIGSIANAVXCGLIESPFENLTXYSEVLQD 292
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLL---------LGFYSNGRFADAEKIWETMVN 226
KG + A L E + G++L +N LL N + I++ M+
Sbjct: 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV 98
Query: 227 MNVRPNVRSYN--ARLDGLAIEKQTKK-ALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
V PN ++ ARL A+ K + A ++V +M++ I P + ++ + GF +G+
Sbjct: 99 DKVVPNEATFTNGARL---AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 284 LEEA 287
++A
Sbjct: 156 ADKA 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,890,392
Number of Sequences: 62578
Number of extensions: 450867
Number of successful extensions: 1050
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 19
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)