BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042154
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160,
mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1
SV=1
Length = 394
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/375 (52%), Positives = 260/375 (69%), Gaps = 6/375 (1%)
Query: 6 RLLSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQ 65
R S + AT + PK S+I + E + K + +KFKK+ FR N +Y TV+
Sbjct: 22 RFFSAVTAAAATPSPPK--PSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYERTVR 79
Query: 66 RLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQ 125
RLA AK+F W+EEILE Q +Y ++SKEGF AR+I LYG+ MFENA+KVFDEMP RNC++
Sbjct: 80 RLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKR 139
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTL 185
T LSFNALL ACVNSKKFD V+G+FK+LP KL IEPD+ SYNT+IK KGS A L
Sbjct: 140 TALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVAL 199
Query: 186 LYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245
+ E+E KG++ D ITFN LL Y+ G+F + E+IW MV NV+ ++RSYNARL GLA+
Sbjct: 200 IDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAM 259
Query: 246 EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAI 302
E ++++ + L +++ E+ PDVFTF A+IKGFV+EG L+EA WY K+GC K +
Sbjct: 260 ENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFV 319
Query: 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362
F L+P +C+ GDL+ A+ LCK F++R LVD+A LQ VVD L K + +EA+E+VEL K
Sbjct: 320 FNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVELAK 379
Query: 363 TNSYCRYNLK-FPSE 376
TN Y + L+ FP E
Sbjct: 380 TNDYLQCKLRLFPKE 394
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890,
mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1
SV=1
Length = 398
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 266/380 (70%), Gaps = 7/380 (1%)
Query: 2 SFPSRLLSCSFSTTATATGP-KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIY 60
S + ++S + TA + P K + S++ G E N KR+V+KFKK+ + RFRTN +Y
Sbjct: 21 SSAATVVSEPTAVTAAISPPQKSLTSLVNG---ERNPKRIVEKFKKACESERFRTNIAVY 77
Query: 61 TGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPG 120
TV+RL AKR ++EEILE QK+Y+D+SKEGF AR+I+LYGKA MFENA+KVF+EMP
Sbjct: 78 DRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPN 137
Query: 121 RNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLD 180
R+C+++VLSFNALL A SKKFD V+ LF +LP KL I+PD+VSYNT+IKA +K SL
Sbjct: 138 RDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLP 197
Query: 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARL 240
A LL E+E KG++ D++TFNTLLL Y G+F E+IW MV NV ++R+YNARL
Sbjct: 198 EAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARL 257
Query: 241 DGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCG 297
GLA E ++K+ + L GE+++ + PDVF+F A+I+G +NEG ++EA+ WY K G
Sbjct: 258 LGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYR 317
Query: 298 MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
+KA F LL+P +C+ GD + A L K TFS+R LV Q LQ +VD L K + EEA+E+
Sbjct: 318 PDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEI 377
Query: 358 VELGKTNSYCRYNLKFPSEE 377
V++ KTN + + L PS+E
Sbjct: 378 VKIAKTNDFLKLKLNLPSQE 397
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 228/370 (61%), Gaps = 8/370 (2%)
Query: 3 FPSRLLSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTG 62
FPS+L + ST + G + K + L + V+KFK+S + FR G+Y+
Sbjct: 38 FPSKLKA---STASVGDGGQSSNDAKDS--KNSKLTQKVEKFKRSCESESFRQVHGLYSA 92
Query: 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRN 122
++RL AK+F I+E+L++QK++ DI E F R++ LYG + M E+A K+FDEMP N
Sbjct: 93 FIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELN 152
Query: 123 CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSA 182
CE+TV SFNALL A VNSKK DE FK+LP KLGI PDLV+YNT+IKA KGS+D
Sbjct: 153 CERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDI 212
Query: 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242
++ E+EK G DLI+FNTLL FY F + ++IW+ M + N+ PN+RSYN+R+ G
Sbjct: 213 LSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRG 272
Query: 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMN 299
L K+ AL L+ M+++ I+PDV T+ ALI + + NLEE + YN + G +
Sbjct: 273 LTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPD 332
Query: 300 KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
+ +L+P +C+KGDLD A + + + L + VV+RL +++EA +LV+
Sbjct: 333 TVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVK 392
Query: 360 LGKTNSYCRY 369
GK SY RY
Sbjct: 393 NGKLQSYFRY 402
>sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150,
mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2
SV=2
Length = 397
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 189/368 (51%), Gaps = 18/368 (4%)
Query: 10 CSFSTTATATGPKFIGS---VIRGIY-----------KENNLKRLVDKFKKSSDLGRFRT 55
C F ++A ATG ++ + I+G+ E + ++L + FK ++
Sbjct: 11 CHFPSSA-ATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIE 69
Query: 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVF 115
N + TV RLA A R +IE++LEHQK +EGF R+I LYGKA M + A F
Sbjct: 70 NRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTF 129
Query: 116 DEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175
M C+++V SFNA L + + D P K GI+ D VS+N IK+F +
Sbjct: 130 FNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCE 189
Query: 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS 235
G LD A + EMEK G+ D++T+ TL+ Y + R +W MV +PN+ +
Sbjct: 190 LGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTT 249
Query: 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---N 292
+N R+ L ++ A +L+ M ++ PD T+ +IKGF + A+R Y +
Sbjct: 250 FNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMH 309
Query: 293 KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVE 352
G N I++ ++ ++C+ G+ D A+ +CK ++ + +++++ L K+ +++
Sbjct: 310 GKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLD 369
Query: 353 EAKELVEL 360
+AK ++EL
Sbjct: 370 QAKSIMEL 377
>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870,
mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2
SV=2
Length = 408
Score = 174 bits (442), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 183/329 (55%), Gaps = 4/329 (1%)
Query: 34 ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILE-HQKQYKDISKE 92
E + R+++ + +S R + ++ V+ LA K F + +L+ + D+ E
Sbjct: 57 EKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSE 116
Query: 93 GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKD 152
F A I LY +A M +++ +VF ++ +TV S NALL AC+ +K + E ++ +
Sbjct: 117 RFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIE 176
Query: 153 LPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212
+P GIEPDL +YN +IK F + GS S+ +++ EME+KGI+ + +F ++ GFY+
Sbjct: 177 MPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAED 236
Query: 213 RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272
+ + K+ M + V V +YN R+ L K++K+A L+ M S + P+ T+
Sbjct: 237 KSDEVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYS 296
Query: 273 ALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329
LI GF NE + EEAK+ + GC + + L+ ++C+ GD + A +LCK + +
Sbjct: 297 HLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEK 356
Query: 330 RCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+ + ++ +V+ LAK+ +VEEAKEL+
Sbjct: 357 NWVPSFSIMKSLVNGLAKDSKVEEAKELI 385
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Query: 113 KVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172
KV M R V ++N + + KK E L + G++P+ V+Y+ +I
Sbjct: 243 KVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGM-LSAGMKPNTVTYSHLIHG 301
Query: 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232
F ++ + A L M +G + D + TL+ G F A + + + N P+
Sbjct: 302 FCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPS 361
Query: 233 VRSYNARLDGLAIEKQTKKALELVGEMRSK 262
+ ++GLA + + ++A EL+G+++ K
Sbjct: 362 FSIMKSLVNGLAKDSKVEEAKELIGQVKEK 391
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520,
mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2
SV=1
Length = 418
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 165/304 (54%), Gaps = 9/304 (2%)
Query: 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRN 122
TVQRLA ++RF IE ++E K I E F + LI YG+A+MF++A K+F+EM
Sbjct: 73 TVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLG 132
Query: 123 CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL-GIEPDLVSYNTIIKAFVDKGSLDS 181
+TV+SFNALL AC++S F+ V LF + P + I PD +SY +IK++ D G +
Sbjct: 133 TPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEK 192
Query: 182 ANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLD 241
A ++ +ME KG+ + +I F T+L Y NG +AE +W MVN + YN RL
Sbjct: 193 AMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLM 252
Query: 242 GLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGM--- 298
A E ++ EL+ EM S + PD ++ L+ + +G + EAK+ Y G+
Sbjct: 253 NAAKE-SPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYE----GLEQP 307
Query: 299 NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
N A F+ L+ +C G D + K++ + D + + + L K R+E+A+ +
Sbjct: 308 NAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVA 367
Query: 359 ELGK 362
+ K
Sbjct: 368 RIVK 371
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 186/352 (52%), Gaps = 8/352 (2%)
Query: 13 STTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTG-TVQRLANAK 71
+TTA ++G + + KE++ + + + SD ++ TV+RLA +
Sbjct: 22 TTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCR 81
Query: 72 RFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN 131
RF IE ++E K I +E F + LI YG+A+MF +A + F++M ++ +SFN
Sbjct: 82 RFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFN 141
Query: 132 ALLGACVNSKKFDEVDGLFKDLPHKLG-IEPDLVSYNTIIKAFVDKGSLDSANTLLYEME 190
ALL AC++SK FD+V LF ++P + I PD +SY +IK++ D G+ + A ++ +M+
Sbjct: 142 ALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQ 201
Query: 191 KKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT- 249
KG+ + I F T+L Y G A+ +W MV + +YN R+ ++ +K++
Sbjct: 202 GKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRI--MSAQKESP 259
Query: 250 KKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLL 306
++ EL+ EM S + PD ++ L+ + G L+EAK+ Y + C N A F+ L
Sbjct: 260 ERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTL 319
Query: 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+ +C + + + K++ + D L+ +V L + + ++AK L+
Sbjct: 320 IFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLI 371
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 74 RWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNAL 133
+ IE + + Q + +++ FT L +LY K + E A +++EM + CE ++N
Sbjct: 192 KAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGEL-EVADNLWNEMVKKGCELDNAAYNVR 250
Query: 134 LGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKG 193
+ + + + V L +++ +G++PD +SYN ++ A+ ++G LD A + +E
Sbjct: 251 IMS-AQKESPERVKELIEEM-SSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNN 308
Query: 194 IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKAL 253
+ TF TL+ + + I++ V M+ P+ + + GL K+ A
Sbjct: 309 CAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAK 368
Query: 254 ELVGEMRSK 262
L+ ++ K
Sbjct: 369 GLIRTVKKK 377
>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630,
mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1
SV=1
Length = 405
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 174/333 (52%), Gaps = 4/333 (1%)
Query: 34 ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK-DISKE 92
ENN R+++ + +S + + I++ V LA K F + ++L+ Q + D E
Sbjct: 52 ENNPDRILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSE 111
Query: 93 GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKD 152
F R I LYG+A M + + + F + +TV S NALL AC+ +K + E + ++ +
Sbjct: 112 SFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLE 171
Query: 153 LPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212
+P GIEPDL +YN +I+ + GS S+ +++ EME+K I+ +F ++ GFY
Sbjct: 172 MPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEE 231
Query: 213 RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272
+F + K+ M V V +YN + L K++ +A L+ + S + P+ T+
Sbjct: 232 KFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYS 291
Query: 273 ALIKGFVNEGNLEEAKRWYNKSGCGMNKA---IFKLLVPFVCEKGDLDFAFNLCKRTFSE 329
LI GF +E NL+EA + C K + L+ +C+ GD + A LC+ + +
Sbjct: 292 LLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEK 351
Query: 330 RCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362
+ + ++ +V+ LA +V+EAKEL+ + K
Sbjct: 352 NWVPSFSVMKWLVNGLASRSKVDEAKELIAVVK 384
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 7/214 (3%)
Query: 160 EPDLVSYNTIIKAFVDKGS---LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216
+PD S + ++A + G LD + +E+ I + + N LL + +
Sbjct: 105 QPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKE 164
Query: 217 AEKIWETMVNM-NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
A +++ M M + P++ +YN + L T + +V EM K I P +F +I
Sbjct: 165 ANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMI 224
Query: 276 KGFVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332
GF E +E + R ++ G + A + +++ +C++ A L S R
Sbjct: 225 DGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMR 284
Query: 333 VDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366
+ L++ E ++EA L E+ N Y
Sbjct: 285 PNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGY 318
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 2/184 (1%)
Query: 79 ILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV 138
+ E ++++ + F + Y K F+ RKV M V ++N ++
Sbjct: 205 VAEMERKWIKPTAASFGLMIDGFY-KEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLC 263
Query: 139 NSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL 198
KK E L D + P+ V+Y+ +I F + +LD A L M G + D
Sbjct: 264 KRKKSAEAKALI-DGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDS 322
Query: 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258
+ TL+ G F A + + N P+ ++GLA + +A EL+
Sbjct: 323 ECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAV 382
Query: 259 MRSK 262
++ K
Sbjct: 383 VKEK 386
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 160/326 (49%), Gaps = 8/326 (2%)
Query: 53 FRTNTGIYTGTVQRLANAKRFRWIEEIL-EHQKQYKDI-SKEGFTARLIALYGKAAMFEN 110
F N Y + +L+ A+ F +E ++ + + Y I E L+ YG A +E+
Sbjct: 79 FTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYES 138
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
+ ++F +P +++V S N LL + +++FD V +FK+ GI P++ + N ++
Sbjct: 139 SMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLV 198
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
KA K ++SA +L E+ G+ +L+T+ T+L G+ + G A+++ E M++
Sbjct: 199 KALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWY 258
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
P+ +Y +DG + +A ++ +M EI P+ T+ +I+ E EA+
Sbjct: 259 PDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNM 318
Query: 291 YN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347
++ + + ++ ++ +CE +D A L ++ C+ D A L ++ L K
Sbjct: 319 FDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCK 378
Query: 348 ELRVEEAKEL---VELGKTNSYCRYN 370
E RV EA++L E G S YN
Sbjct: 379 EGRVTEARKLFDEFEKGSIPSLLTYN 404
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 131/304 (43%), Gaps = 50/304 (16%)
Query: 27 VIRGIYKENNLK---RLVDKFKKSSDLGRFRTNTGIYTGTVQR--LANAKRFRWIEEILE 81
+++ + K+N+++ +++D+ + T T I G V R + +AKR +EE+L+
Sbjct: 197 LVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRV--LEEMLD 254
Query: 82 HQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK 141
+ Y D + +T L+ Y K F A V D+M E +++ ++ A K
Sbjct: 255 -RGWYPDATT--YTV-LMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEK 310
Query: 142 K-------FDE----------------VDGLFKDLPHKL-------------GIEPDLVS 165
K FDE +D L +D HK+ PD
Sbjct: 311 KSGEARNMFDEMLERSFMPDSSLCCKVIDALCED--HKVDEACGLWRKMLKNNCMPDNAL 368
Query: 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225
+T+I +G + A L E EK I L+T+NTL+ G G +A ++W+ M
Sbjct: 369 LSTLIHWLCKEGRVTEARKLFDEFEKGSIP-SLLTYNTLIAGMCEKGELTEAGRLWDDMY 427
Query: 226 NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLE 285
+PN +YN ++GL+ K+ + ++ EM P+ TF L +G G E
Sbjct: 428 ERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEE 487
Query: 286 EAKR 289
+A +
Sbjct: 488 DAMK 491
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
+ A ++ +M NC + L+ + E LF + G P L++YNT
Sbjct: 348 DEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSLLTYNT 405
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I +KG L A L +M ++ + + T+N L+ G NG + ++ E M+ +
Sbjct: 406 LIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIG 465
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVG 257
PN ++ +GL + + A+++V
Sbjct: 466 CFPNKTTFLILFEGLQKLGKEEDAMKIVS 494
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 154/340 (45%), Gaps = 10/340 (2%)
Query: 7 LLSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQR 66
+L FS + A + S++ G+ K ++ ++ K+ D G N +Y +
Sbjct: 323 MLCLRFSPSEAA-----VSSLVEGLRKRGKIEEALNLVKRVVDFG-VSPNLFVYNALIDS 376
Query: 67 LANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQT 126
L ++F E + + + + + LI ++ + + A EM + +
Sbjct: 377 LCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLS 436
Query: 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLL 186
V +N+L+ +G ++ +K +EP +V+Y +++ + KG ++ A L
Sbjct: 437 VYPYNSLINGHCKFGDISAAEGFMAEMINK-KLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 187 YEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE 246
+EM KGI + TF TLL G + G DA K++ M NV+PN +YN ++G E
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555
Query: 247 KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIF 303
KA E + EM K I PD +++ LI G G EAK + +K C +N+ +
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615
Query: 304 KLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVD 343
L+ C +G L+ A ++C+ +D +++D
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLID 655
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 5/314 (1%)
Query: 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMP 119
Y V L + F E+++ + E + L+ K E A + +
Sbjct: 300 YCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVV 359
Query: 120 GRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL 179
+ +NAL+ + +KF E + LF D K+G+ P+ V+Y+ +I F +G L
Sbjct: 360 DFGVSPNLFVYNALIDSLCKGRKFHEAELLF-DRMGKIGLRPNDVTYSILIDMFCRRGKL 418
Query: 180 DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR 239
D+A + L EM G++L + +N+L+ G G + AE M+N + P V +Y +
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 240 LDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSG---C 296
+ G + + KAL L EM K I P ++TF L+ G G + +A + +N+
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 297 GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKE 356
N+ + +++ CE+GD+ AF K + + D + ++ L + EAK
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 357 LVELGKTNSYCRYN 370
V+ G C N
Sbjct: 599 FVD-GLHKGNCELN 611
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 128/296 (43%), Gaps = 28/296 (9%)
Query: 85 QYKDISK-EGFTARLI---------------ALYGKAAMFENARKVFDEMPGRNCEQTVL 128
++ DIS EGF A +I Y A +++ EM G+ ++
Sbjct: 449 KFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIY 508
Query: 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYE 188
+F LL + + LF ++ + ++P+ V+YN +I+ + ++G + A L E
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMA-EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKE 567
Query: 189 MEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ 248
M +KGI D ++ L+ G G+ ++A+ + + N N Y L G E +
Sbjct: 568 MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Query: 249 TKKALELVGEMRSKEINPDVFTFYALIKGFVNE-------GNLEEAKRWYNKSGCGMNKA 301
++AL + EM + ++ D+ + LI G + G L+E + G +
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM----HDRGLKPDDV 683
Query: 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
I+ ++ + GD AF + +E C+ ++ V++ L K V EA+ L
Sbjct: 684 IYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVL 739
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 42/319 (13%)
Query: 80 LEHQKQYKDISKE--GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGAC 137
L H+ K I+ FT L L+ +A + +A K+F+EM N + +++N ++
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLF-RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGY 552
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
+ K++ K GI PD SY +I G A + + K L+
Sbjct: 553 CEEGDMSKAFEFLKEMTEK-GIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
I + LL GF G+ +A + + MV V ++ Y +DG K K L+
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLK 671
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKG 314
EM + + PD + ++I G+ +EA ++ GC N+ + ++ +C+ G
Sbjct: 672 EMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAG 731
Query: 315 DLDFAFNLCKRT---------FSERCLVD--------------------------QAPLQ 339
++ A LC + + C +D A
Sbjct: 732 FVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYN 791
Query: 340 LVVDRLAKELRVEEAKELV 358
+++ ++ R+EEA EL+
Sbjct: 792 MLIRGFCRQGRIEEASELI 810
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 16/295 (5%)
Query: 70 AKRFRWIEEILEHQKQYKDISKEGFTARLI----ALYGKAAMFENARKVFDEMPGRNCEQ 125
+K F +++E+ E K I + ++ R + L G+A+ A+ D + NCE
Sbjct: 559 SKAFEFLKEMTE-----KGIVPDTYSYRPLIHGLCLTGQAS---EAKVFVDGLHKGNCEL 610
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTL 185
+ + LL K +E + +++ + G++ DLV Y +I + L
Sbjct: 611 NEICYTGLLHGFCREGKLEEALSVCQEMVQR-GVDLDLVCYGVLIDGSLKHKDRKLFFGL 669
Query: 186 LYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245
L EM +G++ D + + +++ G F +A IW+ M+N PN +Y A ++GL
Sbjct: 670 LKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729
Query: 246 EKQTKKALELVGEMRSKEINPDVFTFYALIKGFV-NEGNLEEAKRWYNK--SGCGMNKAI 302
+A L +M+ P+ T+ + E ++++A +N G N A
Sbjct: 730 AGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTAT 789
Query: 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
+ +L+ C +G ++ A L R + D +++ L + V++A EL
Sbjct: 790 YNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 138/306 (45%), Gaps = 13/306 (4%)
Query: 24 IGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQ 83
+ +++ G+ K + ++ F +G R + IYTG ++ L K +E++ H
Sbjct: 195 LSALLHGLVKFRHFGLAMELFNDMVSVG-IRPDVYIYTGVIRSLCELKDLSRAKEMIAHM 253
Query: 84 KQYK-DISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK 142
+ D++ + + L K ++E A + ++ G++ + V+++ L+ ++
Sbjct: 254 EATGCDVNIVPYNVLIDGLCKKQKVWE-AVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQE 312
Query: 143 FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202
F E+ D L P + +++++ +G ++ A L+ + G+ +L +N
Sbjct: 313 F-EIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYN 371
Query: 203 TLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262
L+ +F +AE +++ M + +RPN +Y+ +D + AL +GEM
Sbjct: 372 ALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431
Query: 263 EINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFV------CEKGDL 316
+ V+ + +LI G G++ A+ + + +NK + +V + C KG +
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEM---INKKLEPTVVTYTSLMGGYCSKGKI 488
Query: 317 DFAFNL 322
+ A L
Sbjct: 489 NKALRL 494
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 4/189 (2%)
Query: 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLL 186
V + +ALL V + F LF D+ +GI PD+ Y +I++ + L A ++
Sbjct: 192 VRTLSALLHGLVKFRHFGLAMELFNDMV-SVGIRPDVYIYTGVIRSLCELKDLSRAKEMI 250
Query: 187 YEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE 246
ME G ++++ +N L+ G + +A I + + +++P+V +Y + GL
Sbjct: 251 AHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKV 310
Query: 247 KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKS---GCGMNKAIF 303
++ + LE++ EM +P +L++G G +EEA + G N ++
Sbjct: 311 QEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVY 370
Query: 304 KLLVPFVCE 312
L+ +C+
Sbjct: 371 NALIDSLCK 379
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 3/197 (1%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
+I K F+ A ++D M C +++ A++ + +E + L + +
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKM-QPV 746
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTL-LYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216
P+ V+Y + + KG +D + L+ KG+ + T+N L+ GF GR +
Sbjct: 747 SSVPNQVTYGCFLD-ILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEE 805
Query: 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276
A ++ M+ V P+ +Y ++ L KKA+EL M K I PD + LI
Sbjct: 806 ASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865
Query: 277 GFVNEGNLEEAKRWYNK 293
G G + +A N+
Sbjct: 866 GCCVAGEMGKATELRNE 882
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G+ + +YN +I+ F +G ++ A+ L+ M G+ D IT+ T++ A
Sbjct: 782 GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKA 841
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267
++W +M +RP+ +YN + G + + KA EL EM + + P+
Sbjct: 842 IELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 201 FNTLLLGFYSNGRFADAEKIWETMVN-MNVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259
F+ L+ + + R D +++ M+ +++ P VR+ +A L GL + A+EL +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 260 RSKEINPDVFTFYALIKGFVNEGNLEEAKRW---YNKSGCGMNKAIFKLLVPFVCEK 313
S I PDV+ + +I+ +L AK +GC +N + +L+ +C+K
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKK 275
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 130/254 (51%), Gaps = 4/254 (1%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
++A +VFDEM R ++++N L+G K +E + + + GI P+L++YNT
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD-GINPNLITYNT 343
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I F G L A +L +++ +G+ L+T+N L+ GF G + A K+ + M
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAK 288
++P+ +Y +D A +KA++L M + PDV T+ LI GF +G + EA
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 289 RWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL 345
R + + C N+ I+ ++ C++G A L K + + A + +++ L
Sbjct: 464 RLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Query: 346 AKELRVEEAKELVE 359
KE + +EA+ LVE
Sbjct: 524 CKERKSKEAERLVE 537
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 4/201 (1%)
Query: 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLL 186
V SF L+ C + + ++ L +L + G P++V Y T+I KG ++ A L
Sbjct: 163 VYSFGILIKGCCEAGEIEKSFDLLIELT-EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 187 YEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE 246
+EM K G+ + T+ L+ G + NG +++E M V PN+ +YN ++ L +
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281
Query: 247 KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIF 303
+TK A ++ EMR + ++ ++ T+ LI G E L EA + ++ G N +
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341
Query: 304 KLLVPFVCEKGDLDFAFNLCK 324
L+ C G L A +LC+
Sbjct: 342 NTLIDGFCGVGKLGKALSLCR 362
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 140/319 (43%), Gaps = 42/319 (13%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
+I G++K K+ + ++K + G F N Y + +L R + ++ + ++
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVF-PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE- 296
Query: 87 KDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE 145
+ +S T LI + A KV D+M ++++N L+ K +
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGK 356
Query: 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRL--------- 196
L +DL + G+ P LV+YN ++ F KG A ++ EME++GI+
Sbjct: 357 ALSLCRDLKSR-GLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Query: 197 --------------------------DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
D+ T++ L+ GF G+ +A +++++MV N
Sbjct: 416 DTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCE 475
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
PN YN + G E + +AL+L+ EM KE+ P+V ++ +I+ E +EA+R
Sbjct: 476 PNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERL 535
Query: 291 YNK---SGCGMNKAIFKLL 306
K SG + +I L+
Sbjct: 536 VEKMIDSGIDPSTSILSLI 554
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 132/258 (51%), Gaps = 6/258 (2%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
E A ++ +EM G C +++++ L+ A + K DE G K++ +G+E DLV Y
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKF-MGLEADLVVYT 251
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
++I+ F D G LD L E+ ++G IT+NTL+ GF G+ +A +I+E M+
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
VRPNV +Y +DGL +TK+AL+L+ M K+ P+ T+ +I +G + +A
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADA 371
Query: 288 ---KRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL--VV 342
K + + +L+ +C KGDLD A L + D + ++
Sbjct: 372 VEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALI 431
Query: 343 DRLAKELRVEEAKELVEL 360
L KE R+ +A ++ +L
Sbjct: 432 HGLCKENRLHQALDIYDL 449
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 114/268 (42%), Gaps = 4/268 (1%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++IRG K LK + F+ + G R N YTG + L + + ++L +
Sbjct: 287 TLIRGFCKLGQLKEASEIFEFMIERG-VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIE 345
Query: 86 YKDISKEGFTARLIA-LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
KD T +I K + +A ++ + M R +++N LLG D
Sbjct: 346 -KDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLD 404
Query: 145 EVDGL-FKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT 203
E L + L +PD++SYN +I + L A + + +K D +T N
Sbjct: 405 EASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNI 464
Query: 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263
LL G A ++W+ + + + N +Y A +DG A L+ +MR E
Sbjct: 465 LLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSE 524
Query: 264 INPDVFTFYALIKGFVNEGNLEEAKRWY 291
+ P VF + L+ EG+L++A R +
Sbjct: 525 LQPSVFDYNCLLSSLCKEGSLDQAWRLF 552
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 127/281 (45%), Gaps = 13/281 (4%)
Query: 16 ATATGPKFIG--SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF 73
++ T P I ++I G+ KEN L + +D + DL + G T L + +
Sbjct: 417 SSYTDPDVISYNALIHGLCKENRLHQALDIY----DLLVEKLGAGDRVTTNILLNSTLKA 472
Query: 74 RWIEEILEHQKQYKDI----SKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLS 129
+ + +E KQ D + + +TA +I + K M A+ + +M + +V
Sbjct: 473 GDVNKAMELWKQISDSKIVRNSDTYTA-MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFD 531
Query: 130 FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEM 189
+N LL + D+ LF+++ PD+VS+N +I + G + SA +LL M
Sbjct: 532 YNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKSAESLLVGM 590
Query: 190 EKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249
+ G+ DL T++ L+ F G +A ++ MV+ P+ ++ L + +T
Sbjct: 591 SRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGET 650
Query: 250 KKALELVGEMRSKEINPDVFTFYALIKGFVN-EGNLEEAKR 289
K ELV ++ K+I D ++ N N++ AKR
Sbjct: 651 DKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKR 691
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 3/205 (1%)
Query: 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI 220
PD+ SYNT+I+ F + L+ A L EM+ G L+T+ L+ F G+ +A
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234
Query: 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN 280
+ M M + ++ Y + + G + + L E+ + +P T+ LI+GF
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294
Query: 281 EGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAP 337
G L+EA + + G N + L+ +C G A L + +
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Query: 338 LQLVVDRLAKELRVEEAKELVELGK 362
+++++L K+ V +A E+VEL K
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMK 379
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 13/205 (6%)
Query: 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETM 224
+Y +I F G L+ A LL +M ++ + +N LL G A +++E M
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555
Query: 225 VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNL 284
N P+V S+N +DG K A L+ M ++PD+FT+ LI F+ G L
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615
Query: 285 EEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLV 341
+EA +++K SG + I ++ + +G+ D L K+ + ++D+ V
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTV 675
Query: 342 VDRLAKE----------LRVEEAKE 356
+D + LRV + KE
Sbjct: 676 MDYMCNSSANMDLAKRLLRVTDDKE 700
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 4/262 (1%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
L+A+ + ++E AR +FDEM R EQ V S+N LL A + D + +P K
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR 404
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
I P++VSY+T+I F G D A L EM GI LD +++NTLL + GR +A
Sbjct: 405 -IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEA 463
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
I M ++ ++ +V +YNA L G + + + ++ EM+ + + P++ T+ LI G
Sbjct: 464 LDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDG 523
Query: 278 FVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334
+ G +EA R + +G + ++ L+ +C+ G + A +L E +
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Query: 335 QAPLQLVVDRLAKELRVEEAKE 356
++D + ++ + +
Sbjct: 584 VVTYNSIIDAFGRSATMDRSAD 605
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 127/269 (47%), Gaps = 7/269 (2%)
Query: 94 FTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
+ +I+ G+ A+++F+ TV +F+AL+ A S +E +F +
Sbjct: 235 LASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSM 294
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY--EMEKKGIRLDLITFNTLLLGFYSN 211
+ G+ P+LV+YN +I A KG ++ + EM++ G++ D ITFN+LL
Sbjct: 295 -KEYGLRPNLVTYNAVIDA-CGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRG 352
Query: 212 GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTF 271
G + A +++ M N + +V SYN LD + Q A E++ +M K I P+V ++
Sbjct: 353 GLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSY 412
Query: 272 YALIKGFVNEGNLEEAKRWYNKS---GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328
+I GF G +EA + + G +++ + L+ + G + A ++ + S
Sbjct: 413 STVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMAS 472
Query: 329 ERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
D ++ K+ + +E K++
Sbjct: 473 VGIKKDVVTYNALLGGYGKQGKYDEVKKV 501
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 100/195 (51%), Gaps = 1/195 (0%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
+I + KA F+ A +F EM +S+N LL + +E + +++ +
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA-SV 473
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
GI+ D+V+YN ++ + +G D + EM+++ + +L+T++TL+ G+ G + +A
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEA 533
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
+I+ + +R +V Y+A +D L A+ L+ EM + I+P+V T+ ++I
Sbjct: 534 MEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593
Query: 278 FVNEGNLEEAKRWYN 292
F ++ + + N
Sbjct: 594 FGRSATMDRSADYSN 608
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 63/295 (21%)
Query: 52 RFRTNTGIYTGTVQRLANAKRFRWIEEILE--HQKQYKDISKEGFTAR-LIALYGKAAMF 108
R N Y+ + A A RF +E L + +Y I+ + + L+++Y K
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRF---DEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRS 460
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
E A + EM ++ V+++NALLG K+DEV +F ++ + + P+L++Y+T
Sbjct: 461 EEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE-HVLPNLLTYST 519
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I + G A + E + G+R D++ ++ L+ NG A + + M
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 229 VRPNVRSYNARLDGLA---------------------------IEKQTKKALELVGE--- 258
+ PNV +YN+ +D E + + ++L G+
Sbjct: 580 ISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTT 639
Query: 259 --------------------------MRSKEINPDVFTFYALIKGFVNEGNLEEA 287
M EI P+V TF A++ + E+A
Sbjct: 640 ESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDA 694
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156
R+I L+G+ N R ++CE+ + + +L EV F+ + H+
Sbjct: 629 RVIQLFGQLTTESNNRTT------KDCEEGMQELSCIL----------EV---FRKM-HQ 668
Query: 157 LGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216
L I+P++V+++ I+ A S + A+ LL E+ ++ + + LL+G N +
Sbjct: 669 LEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVV-HGLLMGQREN-VWLQ 726
Query: 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG-EMRSKEINPDVFT 270
A+ +++ + M+ YNA D L Q K+ ELV E RS+++ +V++
Sbjct: 727 AQSLFDKVNEMDGSTASAFYNALTDMLWHFGQ-KRGAELVALEGRSRQVWENVWS 780
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 154/304 (50%), Gaps = 10/304 (3%)
Query: 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL-IALYGKAAMFENARKVFDEM 118
++ + ++A +K + + + H + I + ++ + I + + F A V +M
Sbjct: 72 FSKVLSKIAKSKNYDLVISLFHHM-EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKM 130
Query: 119 PGRNCEQTVLSFNALL-GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177
E V++ ++L+ G C ++ FD +D + K ++G PD+V YNTII G
Sbjct: 131 MKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSK--MEEMGFRPDVVIYNTIIDGSCKIG 188
Query: 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYN 237
++ A L ME+ G+R D +T+N+L+ G +GR++DA ++ MV ++ PNV ++
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248
Query: 238 ARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KS 294
A +D E + +A++L EM + ++PDVFT+ +LI G G ++EAK+ +
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK 308
Query: 295 GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV-DQAPLQLVVDRLAKELRVEE 353
GC + + L+ C+ +D L R ++R LV D ++ + R +
Sbjct: 309 GCLPDVVTYNTLINGFCKSKRVDEGTKL-FREMAQRGLVGDTITYNTIIQGYFQAGRPDA 367
Query: 354 AKEL 357
A+E+
Sbjct: 368 AQEI 371
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 5/203 (2%)
Query: 94 FTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
FTA +I ++ K F A K+++EM R + V ++N+L+ + DE + DL
Sbjct: 247 FTA-VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DL 304
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
G PD+V+YNT+I F +D L EM ++G+ D IT+NT++ G++ GR
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
A++I+ M+ RPN+R+Y+ L GL + + +KAL L M+ EI D+ T+
Sbjct: 365 PDAAQEIFS---RMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 421
Query: 274 LIKGFVNEGNLEEAKRWYNKSGC 296
+I G GN+E+A + C
Sbjct: 422 VIHGMCKIGNVEDAWDLFRSLSC 444
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 123/254 (48%), Gaps = 1/254 (0%)
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
K + +A ++FD M +++N+L+ S ++ + L +D+ + I P++
Sbjct: 186 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR-DIVPNV 244
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
+++ +I FV +G A L EM ++ + D+ T+N+L+ G +GR +A+++ +
Sbjct: 245 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDL 304
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
MV P+V +YN ++G K+ + +L EM + + D T+ +I+G+ G
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 284 LEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVD 343
+ A+ +++ N + +L+ +C ++ A L + +D +V+
Sbjct: 365 PDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 424
Query: 344 RLAKELRVEEAKEL 357
+ K VE+A +L
Sbjct: 425 GMCKIGNVEDAWDL 438
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 36/200 (18%)
Query: 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG 158
+ ++G+ + A+++ D M + C V+++N L+ SK+ DE LF+++ + G
Sbjct: 289 LCMHGRV---DEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR-G 344
Query: 159 IEPDLVSYNTIIKAFVDKGSLDSA----------------NTLLY--------------- 187
+ D ++YNTII+ + G D+A + LLY
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLF 404
Query: 188 -EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE 246
M+K I LD+ T+N ++ G G DA ++ ++ ++P+V SY + G +
Sbjct: 405 ENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRK 464
Query: 247 KQTKKALELVGEMRSKEINP 266
+Q K+ L +M+ + P
Sbjct: 465 RQWDKSDLLYRKMQEDGLLP 484
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI 220
P +V ++ ++ + D +L + ME GI DL ++N ++ RF A +
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN 280
M+ P+V + ++ ++G + A++LV +M PDV + +I G
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186
Query: 281 EGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAP 337
G + +A ++ + G + + LV +C G A L + + +
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 338 LQLVVDRLAKELRVEEAKELVE 359
V+D KE + EA +L E
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYE 268
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 7/278 (2%)
Query: 90 SKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL 149
S +T + AL + + + A +FDEM R C+ V ++ L+ K +E +G+
Sbjct: 300 STRTYTVLIKALCDRG-LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGV 358
Query: 150 FKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFY 209
+ + K I P +++YN +I + G + A LL MEK+ + ++ TFN L+ G
Sbjct: 359 CRKMV-KDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLC 417
Query: 210 SNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVF 269
G+ A + + M++ + P++ SYN +DGL E A +L+ M +I PD
Sbjct: 418 RVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCL 477
Query: 270 TFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRT 326
TF A+I F +G + A + + G +++ L+ VC+ G A + +
Sbjct: 478 TFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETL 537
Query: 327 FSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364
R L L +++D L+K +V+E EL LGK N
Sbjct: 538 VKMRILTTPHSLNVILDMLSKGCKVKE--ELAMLGKIN 573
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKFDEV---------- 146
LI Y K A ++ M R C+ V +FN L+ G C K + V
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436
Query: 147 ------------DGLFKD----LPHKL-------GIEPDLVSYNTIIKAFVDKGSLDSAN 183
DGL ++ +KL IEPD +++ II AF +G D A+
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVAS 496
Query: 184 TLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGL 243
L M +KGI LD +T TL+ G G+ DA I ET+V M + S N LD L
Sbjct: 497 AFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDML 556
Query: 244 AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR---WYNKSGCGMNK 300
+ + K+ L ++G++ + P V T+ L+ G + G++ + R SGC N
Sbjct: 557 SKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNV 616
Query: 301 AIFKLLVPFVCEKGDLDFA 319
+ +++ +C+ G ++ A
Sbjct: 617 YPYTIIINGLCQFGRVEEA 635
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 4/229 (1%)
Query: 133 LLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192
LLG C D + +F + ++ P+ VSY+ +I + G L+ A L +M +K
Sbjct: 237 LLGFCRGLNLRDALK-VFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295
Query: 193 GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA 252
G + T+ L+ G A +++ M+ +PNV +Y +DGL + + ++A
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEA 355
Query: 253 LELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPF 309
+ +M I P V T+ ALI G+ +G + A K C N F L+
Sbjct: 356 NGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415
Query: 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+C G A +L KR D +++D L +E + A +L+
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLL 464
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 5/219 (2%)
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G ++ Y TI+ A G ++A + ++ K G LD +LLLGF DA
Sbjct: 190 GFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDA 249
Query: 218 EKIWETMV-NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276
K+++ M + PN SY+ + GL + ++A L +M K P T+ LIK
Sbjct: 250 LKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIK 309
Query: 277 GFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333
+ G +++A +++ GC N + +L+ +C G ++ A +C++ +R
Sbjct: 310 ALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFP 369
Query: 334 DQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLK 372
+++ K+ RV A EL+ + + + C+ N++
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELLTVMEKRA-CKPNVR 407
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
PH L + D++S +K + +L ++ K G+ ++T+ TL+ G +G
Sbjct: 546 PHSLNVILDMLSKGCKVKEEL---------AMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
+ +I E M PNV Y ++GL + ++A +L+ M+ ++P+ T+
Sbjct: 597 ITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTV 656
Query: 274 LIKGFVNEGNLE---EAKRWYNKSGCGMNKAIF-KLLVPFVCEKGDLDFAFNLCKRTFSE 329
++KG+VN G L+ E R + G +N I+ LL FV + +D N + T S+
Sbjct: 657 MVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGID---NSEESTVSD 713
Query: 330 RCLVDQAP--------------------LQLVVDRLAKELRVEEAKELVE 359
L + P +V RL KE R +E+ +LV+
Sbjct: 714 IALRETDPECINELISVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQ 763
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 152/304 (50%), Gaps = 7/304 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I + K ++ ++ FK+ G R N Y+ + L + R+ ++L +
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKG-IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 86 YK-DISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
K + + F A LI + K F A K++D+M R+ + + ++N+L+ + D
Sbjct: 324 KKINPNLVTFNA-LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
+ +F+ + K PD+V+YNT+IK F ++ L EM +G+ D +T+ TL
Sbjct: 383 KAKQMFEFMVSK-DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ G + +G +A+K+++ MV+ V P++ +Y+ LDGL + +KALE+ M+ EI
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 265 NPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321
D++ + +I+G G +++ + + G N + ++ +C K L A+
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 561
Query: 322 LCKR 325
L K+
Sbjct: 562 LLKK 565
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Query: 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIE 160
L+ KA+ A + D M R C+ ++++ ++ D L + IE
Sbjct: 202 LHNKAS---EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM-EAAKIE 257
Query: 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI 220
D+V +NTII + +D A L EME KGIR +++T+++L+ S GR++DA ++
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317
Query: 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN 280
M+ + PN+ ++NA +D E + +A +L +M + I+PD+FT+ +L+ GF
Sbjct: 318 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377
Query: 281 EGNLEEAKRWY 291
L++AK+ +
Sbjct: 378 HDRLDKAKQMF 388
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 4/220 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
++A +F M +++ FN LL A KKFD V L + + +L I L +YN
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKM-QRLEIVHGLYTYN 124
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I F + + A LL +M K G ++T ++LL G+ R +DA + + MV M
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
RP+ ++ + GL + + +A+ LV M + P++ T+ ++ G G+ + A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 288 KRWYNKSGCGMNKA---IFKLLVPFVCEKGDLDFAFNLCK 324
NK +A IF ++ +C+ +D A NL K
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 284
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 133/296 (44%), Gaps = 21/296 (7%)
Query: 5 SRLLSCSFSTTATATGPKFIGSVIRGIYKEN--NLKRLVDKFKKSSDLGRFRTNTGIYTG 62
S L+SC S + + + +I N L+D F K G+F +Y
Sbjct: 299 SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE---GKFVEAEKLYDD 355
Query: 63 TVQRLANAKRFRW--------IEEILEHQKQYKD--ISKEGFTA-----RLIALYGKAAM 107
++R + F + + + L+ KQ + +SK+ F LI + K+
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
E+ ++F EM R +++ L+ + D +FK + G+ PD+++Y+
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYS 474
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
++ + G L+ A + M+K I+LD+ + T++ G G+ D ++ ++
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
V+PNV +YN + GL ++ ++A L+ +M+ P+ T+ LI+ + +G+
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 4/223 (1%)
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
++ K D+ GLF + + P +V +N ++ A D +L +M++ I
Sbjct: 61 LHDMKLDDAIGLFGGMVKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHG 119
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
L T+N L+ F + + A + M+ + P++ + ++ L+G K+ A+ LV
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKG 314
+M PD TF LI G EA ++ GC N + ++V +C++G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239
Query: 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
D D A NL + + + D ++D L K V++A L
Sbjct: 240 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
+NA+KVF +M +++++ LL N+ K ++ +F D K I+ D+ Y T
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIYIYTT 510
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I+ G +D L + KG++ +++T+NT++ G S +A + + M
Sbjct: 511 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 570
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
PN +YN + + + EL+ EMRS D T L+ +++G L+++
Sbjct: 571 PLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI-GLVANMLHDGRLDKS 628
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 157/360 (43%), Gaps = 41/360 (11%)
Query: 44 FKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYG 103
F + ++G FR + Y+ + +LA ++ F +++IL + +E LI YG
Sbjct: 69 FHQYQEMG-FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYG 127
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
KA + A VF ++ +C +T+ S N L+ V++ + ++ F D + + P+
Sbjct: 128 KAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFF-DGAKDMRLRPNS 186
Query: 164 VSYNTIIKAFVDKGSLDSA-----------------------------------NTLLYE 188
VS+N +IK F+DK ++A +LL +
Sbjct: 187 VSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLED 246
Query: 189 MEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ 248
M KK IR + +TF L+ G G + +A+K+ M +P + +Y + L +
Sbjct: 247 MIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGR 306
Query: 249 TKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKL 305
+A L+GEM+ + I PDV + L+ E + EA R + GC N A +++
Sbjct: 307 IDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRM 366
Query: 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE-LGKTN 364
++ C D D N+ + R A +V L K ++ A ++E +GK N
Sbjct: 367 MIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKN 426
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 109/253 (43%), Gaps = 4/253 (1%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
E A +F + S+++L+ S+ FD VD + + + ++ + +
Sbjct: 63 EEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYR-NVRCRESLFMG 121
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I+ + GS+D A + +++ + + NTL+ NG A+ ++ +M
Sbjct: 122 LIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMR 181
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAK 288
+RPN S+N + G + + A ++ EM E+ P V T+ +LI ++ +AK
Sbjct: 182 LRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAK 241
Query: 289 RWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL 345
K N F LL+ +C KG+ + A L C +++ L
Sbjct: 242 SLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDL 301
Query: 346 AKELRVEEAKELV 358
K R++EAK L+
Sbjct: 302 GKRGRIDEAKLLL 314
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 180/353 (50%), Gaps = 14/353 (3%)
Query: 19 TGPK--FIG--SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFR 74
T PK FI S + + +E + + ++D F K+S F N Y+ + L K+F
Sbjct: 47 TNPKTKFISHESAVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFL 106
Query: 75 WIEEILEHQKQYKDIS-KEGFTARLIALYGKAAMFENARKVFD--EMPGRNCEQTVLSFN 131
++ IL HQ +Y+ +E L+ + ++ + + ++F+ ++ R + ++ + +
Sbjct: 107 AVDAIL-HQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIAR-VKPSLNAIS 164
Query: 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191
L ++S + + L H LG++P+ +N ++K G ++ A ++ EM++
Sbjct: 165 TCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKR 224
Query: 192 KGIRL-DLITFNTLLLGFYSNGRFADAEKIWETMVNM-NVRPNVRSYNARLDGLAIEKQT 249
GI + IT++TL+ +++ R +A +++E M++ + P+ ++N ++G +
Sbjct: 225 SGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEV 284
Query: 250 KKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLL 306
++A +++ M+ NP+V+ + AL+ GF G ++EAK+ ++ K+G ++ + L
Sbjct: 285 ERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTL 344
Query: 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
+ C G+ D A L + RC D +++ L+ E R EEA ++++
Sbjct: 345 MNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLD 397
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 102/195 (52%), Gaps = 3/195 (1%)
Query: 128 LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY 187
++++ L+ + E LF+D+ K GI PD V++N +I F G ++ A +L
Sbjct: 233 ITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILD 292
Query: 188 EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247
M+K G ++ ++ L+ GF G+ +A++ ++ + ++ + Y ++
Sbjct: 293 FMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNG 352
Query: 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW---YNKSGCGMNKAIFK 304
+T +A++L+GEM++ D T+ +++G +EG EEA + + G +NK ++
Sbjct: 353 ETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYR 412
Query: 305 LLVPFVCEKGDLDFA 319
+++ +C G+L+ A
Sbjct: 413 IILNALCCNGELEKA 427
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 95/190 (50%), Gaps = 4/190 (2%)
Query: 128 LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY 187
++FN ++ + + + + D K G P++ +Y+ ++ F G + A
Sbjct: 269 VTFNVMINGFCRAGEVERAKKIL-DFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFD 327
Query: 188 EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247
E++K G++LD + + TL+ F NG +A K+ M R + +YN L GL+ E
Sbjct: 328 EVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEG 387
Query: 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW---YNKSGCGMNKAIFK 304
++++AL+++ + S+ ++ + ++ ++ G LE+A ++ ++ G + A +
Sbjct: 388 RSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWN 447
Query: 305 LLVPFVCEKG 314
LV +CE G
Sbjct: 448 ELVVRLCESG 457
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 81/192 (42%), Gaps = 7/192 (3%)
Query: 76 IEEILEHQKQYKDISKEGFT------ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLS 129
+ +I E ++ + ++ K G L+ + + + A K+ EM C L+
Sbjct: 316 VGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLT 375
Query: 130 FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEM 189
+N +L + + +E + + G+ + SY I+ A G L+ A L M
Sbjct: 376 YNVILRGLSSEGRSEEALQMLDQWGSE-GVHLNKGSYRIILNALCCNGELEKAVKFLSVM 434
Query: 190 EKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249
++GI T+N L++ +G ++ + + + P +S+ A ++ + E++
Sbjct: 435 SERGIWPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKL 494
Query: 250 KKALELVGEMRS 261
EL+ + S
Sbjct: 495 VHVFELLDSLVS 506
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 7/304 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
+VI G+ K +L ++ F G R + Y + L+N+ R+ +L +
Sbjct: 189 TVINGLCKNRDLNNALEVFYCMEKKG-IRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 247
Query: 86 YKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKFD 144
K F LI + K AR ++ EM R+ V ++N+L+ G C++
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC-LG 306
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
+ +F DL G PD+V+YNT+I F ++ L EM +G+ D T+NTL
Sbjct: 307 DAKYMF-DLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTL 365
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ G+ G+ A+K++ MV+ V P++ +YN LD L + +KAL +V +++ E+
Sbjct: 366 IHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEM 425
Query: 265 NPDVFTFYALIKGFVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321
+ D+ T+ +I+G L+EA R + G + + ++ +C KG A
Sbjct: 426 DVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADK 485
Query: 322 LCKR 325
LC+R
Sbjct: 486 LCRR 489
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 5/206 (2%)
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTL 185
++++ +LL +F E L + G P++V YNT+I L++A +
Sbjct: 148 SIVTLGSLLNGFCQGNRFQEAVSLVDSMD-GFGFVPNVVIYNTVINGLCKNRDLNNALEV 206
Query: 186 LYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245
Y MEKKGIR D +T+NTL+ G ++GR+ DA ++ MV + PNV + A +D
Sbjct: 207 FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 266
Query: 246 EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAI 302
E +A L EM + + P+VFT+ +LI GF G L +AK ++ GC +
Sbjct: 267 EGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVT 326
Query: 303 FKLLVPFVCEKGDLDFAFNL-CKRTF 327
+ L+ C+ ++ L C+ T+
Sbjct: 327 YNTLITGFCKSKRVEDGMKLFCEMTY 352
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 101/289 (34%), Gaps = 74/289 (25%)
Query: 142 KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL--- 198
KFD+ LF ++ I P +V + ++ D L ++ME GI DL
Sbjct: 59 KFDDAFSLFCEMLQSRPI-PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSF 117
Query: 199 --------------------------------ITFNTLLLGFYSNGRFADAEKIWETMVN 226
+T +LL GF RF +A + ++M
Sbjct: 118 TILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDG 177
Query: 227 MNVRPNVRSYNARLDGLAIEKQTKKALE-------------------------------- 254
PNV YN ++GL + ALE
Sbjct: 178 FGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTD 237
Query: 255 ---LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVP 308
L+ +M ++I+P+V F ALI FV EGNL EA+ Y + N + L+
Sbjct: 238 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 297
Query: 309 FVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
C G L A + S+ C D ++ K RVE+ +L
Sbjct: 298 GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 10/348 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I + K ++ ++ FK+ G R N Y+ + L + R+ ++L +
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKG-IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 86 YK-DISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
K + + F A LI + K F A K+ D+M R+ + + ++N+L+ + D
Sbjct: 249 KKINPNLVTFNA-LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
+ +F+ + K PDL +YNT+IK F ++ L EM +G+ D +T+ TL
Sbjct: 308 KAKQMFEFMVSK-DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ G + +G +A+K+++ MV+ V P++ +Y+ LDGL + +KALE+ M+ EI
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 265 NPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321
D++ + +I+G G +++ + + G N + ++ +C K L A+
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486
Query: 322 LCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRY 369
L K+ + L D ++ LR + EL + CR+
Sbjct: 487 LLKKMKEDGPLPDSGTYNTLI---RAHLRDGDKAASAELIREMRSCRF 531
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Query: 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKFDEVDGLFKDLPHKL-- 157
L+ KA+ A + D M R C+ ++++ ++ G C K ++D F +L +K+
Sbjct: 127 LHNKAS---EAVALVDRMVQRGCQPNLVTYGVVVNGLC----KRGDIDLAF-NLLNKMEA 178
Query: 158 -GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216
IE D+V +NTII + +D A L EME KGIR +++T+++L+ S GR++D
Sbjct: 179 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 238
Query: 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276
A ++ M+ + PN+ ++NA +D E + +A +L +M + I+PD+FT+ +LI
Sbjct: 239 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLIN 298
Query: 277 GFVNEGNLEEAKRWY 291
GF L++AK+ +
Sbjct: 299 GFCMHDRLDKAKQMF 313
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 33/232 (14%)
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTL 185
++ FN LL A KKFD V L + + +LGI +L +YN +I F + + A L
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKM-QRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 186 LYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245
L +M K G ++T ++LL G+ R +DA + + MV M RP+ ++ + GL +
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 246 EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKL 305
+ +A+ LV M + P++ T+ ++ G
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNG---------------------------- 159
Query: 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
+C++GD+D AFNL + + + D ++D L K V++A L
Sbjct: 160 ----LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 41/330 (12%)
Query: 67 LANAKRFRWIEEILEHQKQYKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQ 125
+A K+F + + E + Q IS +T LI + + + A + +M E
Sbjct: 20 IAKMKKFDLVISLGE-KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEP 78
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIK------------AF 173
++++ ++LL + K+ + L + ++G PD +++ T+I A
Sbjct: 79 SIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKASEAVAL 137
Query: 174 VD-----------------------KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS 210
VD +G +D A LL +ME I D++ FNT++
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197
Query: 211 NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT 270
DA +++ M +RPNV +Y++ + L + A +L+ +M K+INP++ T
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257
Query: 271 FYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTF 327
F ALI FV EG EA++ ++ K + + L+ C LD A + +
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 328 SERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
S+ C D ++ K RVE+ EL
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
+NA+KVF +M +++++ LL N+ K ++ +F D K I+ D+ Y T
Sbjct: 377 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIYIYTT 435
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I+ G +D L + KG++ +++T+NT++ G S +A + + M
Sbjct: 436 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 495
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
P+ +YN + + + EL+ EMRS D T L+ +++G L+++
Sbjct: 496 PLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI-GLVANMLHDGRLDKS 553
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 4/252 (1%)
Query: 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI 169
+A K+ +M + +V++FN L+ + + +P G +P+ +SYN +
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH-GCQPNSLSYNPL 385
Query: 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229
+ F + +D A L M +G D++T+NT+L +G+ DA +I + +
Sbjct: 386 LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR 289
P + +YN +DGLA +T KA++L+ EMR+K++ PD T+ +L+ G EG ++EA +
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505
Query: 290 WYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346
+++ + G N F ++ +C+ D A + + C ++ ++++ LA
Sbjct: 506 FFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565
Query: 347 KELRVEEAKELV 358
E +EA EL+
Sbjct: 566 YEGMAKEALELL 577
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 145/324 (44%), Gaps = 13/324 (4%)
Query: 35 NNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGF 94
NN ++D+ S D+ + T ++ L ++ + + E+L+ Q +D +
Sbjct: 189 NNALSVLDRMSVSPDVVTYNT-------ILRSLCDSGKLKQAMEVLDRMLQ-RDCYPDVI 240
Query: 95 T-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
T LI + + +A K+ DEM R C V+++N L+ + DE D+
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
P G +P+++++N I+++ G A LL +M +KG ++TFN L+ G
Sbjct: 301 PSS-GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL 359
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
A I E M +PN SYN L G EK+ +A+E + M S+ PD+ T+
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 274 LIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330
++ +G +E+A N+ GC + ++ + + G A L ++
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 331 CLVDQAPLQLVVDRLAKELRVEEA 354
D +V L++E +V+EA
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEA 503
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 121/255 (47%), Gaps = 4/255 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
+ A +V D M R+C V+++ L+ A L ++ + G PD+V+YN
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR-GCTPDVVTYN 278
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
++ +G LD A L +M G + ++IT N +L S GR+ DAEK+ M+
Sbjct: 279 VLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
P+V ++N ++ L + +A++++ +M P+ ++ L+ GF E ++ A
Sbjct: 339 GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRA 398
Query: 288 KRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344
+ + GC + + ++ +C+ G ++ A + + S+ C V+D
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458
Query: 345 LAKELRVEEAKELVE 359
LAK + +A +L++
Sbjct: 459 LAKAGKTGKAIKLLD 473
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 47/307 (15%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
++ GI KE RL + K +D+ + T + + RW ++ +K
Sbjct: 280 LVNGICKEG---RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW----MDAEKLL 332
Query: 87 KDISKEGFTAR------LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNS 140
D+ ++GF+ LI + + A + ++MP C+ LS+N LL
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 141 KKFDEV----------------------------DGLFKDLPHKL------GIEPDLVSY 166
KK D DG +D L G P L++Y
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452
Query: 167 NTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN 226
NT+I G A LL EM K ++ D IT+++L+ G G+ +A K +
Sbjct: 453 NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 227 MNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEE 286
M +RPN ++N+ + GL +QT +A++ + M ++ P+ ++ LI+G EG +E
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE 572
Query: 287 AKRWYNK 293
A N+
Sbjct: 573 ALELLNE 579
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 136/291 (46%), Gaps = 13/291 (4%)
Query: 73 FRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA 132
F+++E ++ H DI LI + + A K+ + + G V+++N
Sbjct: 122 FKFLENMVYH-GNVPDIIP---CTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177
Query: 133 LL-GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191
++ G C K E++ L ++ + PD+V+YNTI+++ D G L A +L M +
Sbjct: 178 MISGYC----KAGEINNALSVL-DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232
Query: 192 KGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKK 251
+ D+IT+ L+ + A K+ + M + P+V +YN ++G+ E + +
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292
Query: 252 ALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVP 308
A++ + +M S P+V T +++ + G +A++ + G + F +L+
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352
Query: 309 FVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
F+C KG L A ++ ++ C + ++ KE +++ A E +E
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 6/194 (3%)
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
V N ++ V G L+ L M G D+I TL+ GF G+ A KI E
Sbjct: 103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
+ P+V +YN + G + AL ++ M ++PDV T+ +++ + G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGK 219
Query: 284 LEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340
L++A ++ C + + +L+ C + A L C D +
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Query: 341 VVDRLAKELRVEEA 354
+V+ + KE R++EA
Sbjct: 280 LVNGICKEGRLDEA 293
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 65/164 (39%)
Query: 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255
L+ + N L G + K E MV P++ + G +T+KA ++
Sbjct: 100 LEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKI 159
Query: 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGD 315
+ + PDV T+ +I G+ G + A ++ + + ++ +C+ G
Sbjct: 160 LEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGK 219
Query: 316 LDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
L A + R C D ++++ ++ V A +L++
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLD 263
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 148/293 (50%), Gaps = 7/293 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I G+ K ++ ++ FK+ G R N Y+ + L N R+ +L +
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETKG-IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 86 YKDISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
K I+ + FT + LI + K A K++DEM R+ + +++++++L+ + D
Sbjct: 320 RK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
E +F+ + K PD+V+YNT+IK F ++ + EM ++G+ + +T+N L
Sbjct: 379 EAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ G + G A++I++ MV+ V PN+ +YN LDGL + +KA+ + ++ ++
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 265 NPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKG 314
P ++T+ +I+G G +E+ + + G + + ++ C KG
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKG 550
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 8/283 (2%)
Query: 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPH 155
+ L+ Y + A + D+M + ++FN L+ K E L +
Sbjct: 155 SSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA 214
Query: 156 KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215
K G +PDLV+Y ++ +G D A LL +ME+ + ++ +NT++ G
Sbjct: 215 K-GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 273
Query: 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
DA +++ M +RPNV +Y++ + L + A L+ +M ++INPDVFTF ALI
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333
Query: 276 KGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332
FV EG L EA++ Y+ K + + L+ C LD A + + S+ C
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF 393
Query: 333 VDQAPLQLVVDRLAKELRVEEA----KELVELGKTNSYCRYNL 371
D ++ K RVEE +E+ + G + YN+
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 4/220 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
++A +F EM +++ F+ LL A KFD V L + + LGI + +Y+
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQM-QNLGIPHNHYTYS 120
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I F + L A +L +M K G +++T ++LL G+ + R ++A + + M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+PN ++N + GL + + +A+ L+ M +K PD+ T+ ++ G G+ + A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 288 KRWYNKSGCGMNKA---IFKLLVPFVCEKGDLDFAFNLCK 324
NK G + I+ ++ +C+ +D A NL K
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 280
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 114/252 (45%), Gaps = 8/252 (3%)
Query: 42 DKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR---- 97
D+ ++ + F + + V K F + + E + ++++S+ G
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 98 --LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPH 155
LI +A + A+++F EM ++++N LL + K ++ +F+ L
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL-Q 493
Query: 156 KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215
+ +EP + +YN +I+ G ++ L + KG++ D++ +NT++ GF G
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
Query: 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
+A+ +++ M PN YN + + + + EL+ EMRS D T L+
Sbjct: 554 EADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLV 612
Query: 276 KGFVNEGNLEEA 287
+++G L+++
Sbjct: 613 TNMLHDGRLDKS 624
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 38/217 (17%)
Query: 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV--------- 229
LD A L EM K +I F+ LL +F + E M N+ +
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 230 --------------------------RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263
PN+ + ++ L+G K+ +A+ LV +M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 264 INPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAF 320
P+ TF LI G EA ++ GC + + ++V +C++GD D AF
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 321 NLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
NL + + ++D L K +++A L
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 278
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 136/266 (51%), Gaps = 7/266 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I + K ++ + F + + G R + +YT V L N+ R+R + +L +
Sbjct: 182 TIIDSLCKNGHVNYALSLFDQMENYG-IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240
Query: 86 YKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
K I + T LI + K F +A ++++EM + + ++ +L+ D
Sbjct: 241 RK-IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVD 299
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
E +F + K G PD+V+Y ++I F +D A + YEM +KG+ + IT+ TL
Sbjct: 300 EARQMFYLMETK-GCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ GF G+ A++++ MV+ V PN+R+YN L L + KKAL + +M+ +E+
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418
Query: 265 N---PDVFTFYALIKGFVNEGNLEEA 287
+ P+++T+ L+ G G LE+A
Sbjct: 419 DGVAPNIWTYNVLLHGLCYNGKLEKA 444
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 135/267 (50%), Gaps = 6/267 (2%)
Query: 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA-LYGKAAMFENARKVFDEM 118
+T + +A K+F + + +H Q +S + +T L+ + +++ A +M
Sbjct: 75 FTKLLNVIAKMKKFDVVINLCDHL-QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKM 133
Query: 119 PGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178
E +++F +L+ + +E + + ++GI+PD+V Y TII + G
Sbjct: 134 MKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGH 192
Query: 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNA 238
++ A +L +ME GIR D++ + +L+ G ++GR+ DA+ + M ++P+V ++NA
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252
Query: 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSG 295
+D E + A EL EM I P++FT+ +LI GF EG ++EA++ + G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 296 CGMNKAIFKLLVPFVCEKGDLDFAFNL 322
C + + L+ C+ +D A +
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKI 339
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 4/223 (1%)
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
++S +F+E LF + + P ++ + ++ D L ++ G+ D
Sbjct: 48 LHSLQFNEALDLFTHMVESRPL-PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHD 106
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
L T N L+ F + + A M+ + P++ ++ + ++G + + ++A+ +V
Sbjct: 107 LYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVN 166
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKS---GCGMNKAIFKLLVPFVCEKG 314
+M I PDV + +I G++ A +++ G + ++ LV +C G
Sbjct: 167 QMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSG 226
Query: 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
A +L + + D ++D KE + +A+EL
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEEL 269
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 101/216 (46%), Gaps = 8/216 (3%)
Query: 58 GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR------LIALYGKAAMFENA 111
G + V + F +++ + K + ++S++G T LI +G+ A
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVA 371
Query: 112 RKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL--GIEPDLVSYNTI 169
++VF M R + ++N LL + K + +F+D+ + G+ P++ +YN +
Sbjct: 372 QEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVL 431
Query: 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229
+ G L+ A + +M K+ + + +IT+ ++ G G+ +A ++ ++ + V
Sbjct: 432 LHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGV 491
Query: 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEIN 265
+PNV +Y + GL E +A L +M+ ++
Sbjct: 492 KPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 7/264 (2%)
Query: 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG 158
+ L GK A A + D+M C+ +++ +L S + L + + +
Sbjct: 203 LCLSGKEA---EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER-N 258
Query: 159 IEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAE 218
I+ D V Y+ II GSLD+A L EME KGI ++IT+N L+ GF + GR+ D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 219 KIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGF 278
K+ M+ + PNV +++ +D E + ++A EL EM + I PD T+ +LI GF
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 279 VNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335
E +L++A + + GC N F +L+ C+ +D L ++ + D
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 336 APLQLVVDRLAKELRVEEAKELVE 359
++ + ++ AKEL +
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQ 462
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 130/257 (50%), Gaps = 4/257 (1%)
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
K +NA +F+EM + ++++N L+G N+ ++D+ L +D+ K I P++
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI-KRKINPNV 333
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
V+++ +I +FV +G L A L EM +GI D IT+ +L+ GF A ++ +
Sbjct: 334 VTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDL 393
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
MV+ PN+R++N ++G + LEL +M + + D T+ LI+GF G
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453
Query: 284 LEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340
L AK + + N +K+L+ +C+ G+ + A + ++ + +D +
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513
Query: 341 VVDRLAKELRVEEAKEL 357
++ + +V++A +L
Sbjct: 514 IIHGMCNASKVDDAWDL 530
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 39/260 (15%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI + A +++ K+ +M R V++F+ L+ + V K E + L K++ H+
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR- 362
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANT--------------------------------- 184
GI PD ++Y ++I F + LD AN
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422
Query: 185 --LLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242
L +M +G+ D +T+NTL+ GF G+ A+++++ MV+ V PN+ +Y LDG
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMN 299
L +++KALE+ ++ ++ D+ + +I G N +++A + G
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542
Query: 300 KAIFKLLVPFVCEKGDLDFA 319
+ +++ +C+KG L A
Sbjct: 543 VKTYNIMIGGLCKKGPLSEA 562
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 150/339 (44%), Gaps = 15/339 (4%)
Query: 14 TTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF 73
TT T IG ++ K L D K+ + N ++ + +
Sbjct: 295 TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR-----KINPNVVTFSVLIDSFVKEGKL 349
Query: 74 RWIEEILEHQKQYKDISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA 132
R EE L + ++ I+ + T LI + K + A ++ D M + C+ + +FN
Sbjct: 350 REAEE-LHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 133 LLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192
L+ + + D+ LF+ + + G+ D V+YNT+I+ F + G L+ A L EM +
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLR-GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 467
Query: 193 GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA 252
+ +++T+ LL G NG A +I+E + + ++ YN + G+ + A
Sbjct: 468 KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 527
Query: 253 LELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPF 309
+L + K + P V T+ +I G +G L EA+ + K G + + +L+
Sbjct: 528 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587
Query: 310 VCEKGDLDFAFNLCKRTFSERC--LVDQAPLQLVVDRLA 346
GD + L + +RC VD + +++V+D L+
Sbjct: 588 HLGDGDATKSVKLIEEL--KRCGFSVDASTIKMVIDMLS 624
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 37/286 (12%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL-----FKDLPH-------- 155
++A +F +M TV+ F+ L A +K++D V L K + H
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129
Query: 156 ---------------------KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI 194
KLG EP+ ++++T+I +G + A L+ M + G
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189
Query: 195 RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254
+ DLIT NTL+ G +G+ A+A + + MV +PN +Y L+ + QT A+E
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 249
Query: 255 LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVC 311
L+ +M + I D + +I G G+L+ A +N+ G N + +L+ C
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 309
Query: 312 EKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
G D L + + + +++D KE ++ EA+EL
Sbjct: 310 NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 355
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 9/241 (3%)
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
V+ K D +D LF+D+ H + P ++ ++ + A D L +ME KGI +
Sbjct: 65 VDIKADDAID-LFRDMIHSRPL-PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHN 122
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
L T + ++ F + A ++ + PN +++ ++GL +E + +ALELV
Sbjct: 123 LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 182
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKS---GCGMNKAIFKLLVPFVCEKG 314
M PD+ T L+ G G EA +K GC N + ++ +C+ G
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA----KELVELGKTNSYCRYN 370
A L ++ +D +++D L K ++ A E+ G T + YN
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 302
Query: 371 L 371
+
Sbjct: 303 I 303
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
E A ++F+++ E + +N ++ N+ K D+ LF LP K G++P + +YN
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNI 548
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I KG L A L +ME+ G D T+N L+ +G + K+ E +
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELV 256
+ + +D L+ + K L+++
Sbjct: 609 FSVDASTIKMVIDMLSDGRLKKSFLDML 636
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 138/275 (50%), Gaps = 8/275 (2%)
Query: 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT-ARLIALYGKAAMFENARKVFDEM 118
+T + AN +R+ + + + Y IS + ++ LI + + + A V +M
Sbjct: 74 FTRLLTATANLRRYETVIYFSQKMELY-GISHDLYSFTILIHCFCRCSRLSFALSVLGKM 132
Query: 119 PGRNCEQTVLSFNALL-GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177
E ++++F +LL G C+ ++ D + L K G EP++V YNT+I G
Sbjct: 133 MKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVI--LMVKSGYEPNVVVYNTLIDGLCKNG 190
Query: 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYN 237
L+ A LL EMEKKG+ D++T+NTLL G +GR++DA ++ M+ ++ P+V ++
Sbjct: 191 ELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFT 250
Query: 238 ARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KS 294
A +D + +A EL EM ++P+ T+ ++I G G L +AK+ ++
Sbjct: 251 ALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASK 310
Query: 295 GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329
GC N + L+ C+ +D L +R E
Sbjct: 311 GCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 4/250 (1%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A ++ +EM + V+++N LL S ++ + + +D+ K I PD+V++ +I
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDM-MKRSINPDVVTFTALI 253
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
FV +G+LD A L EM + + + +T+N+++ G +GR DA+K ++ M +
Sbjct: 254 DVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCF 313
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR- 289
PNV +YN + G + + ++L M + N D+FT+ LI G+ G L A
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI 373
Query: 290 --WYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347
W + +L+ +C G+++ A + +++ L K
Sbjct: 374 FCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCK 433
Query: 348 ELRVEEAKEL 357
+VE+A EL
Sbjct: 434 ADKVEKAWEL 443
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 112/256 (43%), Gaps = 4/256 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
FE+A +F EM +++ F LL A N ++++ V F GI DL S+
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVI-YFSQKMELYGISHDLYSFT 110
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I F L A ++L +M K G ++TF +LL GF R DA + MV
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
PNV YN +DGL + ALEL+ EM K + DV T+ L+ G G +A
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 288 KRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344
R K + F L+ ++G+LD A L K + +++
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290
Query: 345 LAKELRVEEAKELVEL 360
L R+ +AK+ +L
Sbjct: 291 LCMHGRLYDAKKTFDL 306
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 1/178 (0%)
Query: 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI 169
+A+K FD M + C V+++N L+ + DE LF+ + + G D+ +YNT+
Sbjct: 299 DAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTL 357
Query: 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229
I + G L A + M + + D+IT LL G NG A ++ M
Sbjct: 358 IHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEK 417
Query: 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+ +YN + GL + +KA EL + + + PD T+ +I G G EA
Sbjct: 418 YIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREA 475
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 114/302 (37%), Gaps = 88/302 (29%)
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY---EMEKKGI 194
++S +F++ LF ++ H + P +V + ++ A +L T++Y +ME GI
Sbjct: 47 LHSIRFEDAFALFFEMVHSQPL-PSIVDFTRLLTA---TANLRRYETVIYFSQKMELYGI 102
Query: 195 RLDL-----------------------------------ITFNTLLLGFYSNGRFADAEK 219
DL +TF +LL GF R DA
Sbjct: 103 SHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFS 162
Query: 220 IWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK----------------- 262
+ MV PNV YN +DGL + ALEL+ EM K
Sbjct: 163 LVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222
Query: 263 ------------------EINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKA 301
INPDV TF ALI FV +GNL+EA+ Y +S N
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282
Query: 302 IFKLLVPFVCEKGDLDFAFNLCKRTF----SERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
+ ++ +C G L A K+TF S+ C + ++ K V+E +L
Sbjct: 283 TYNSIINGLCMHGRLYDA----KKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338
Query: 358 VE 359
+
Sbjct: 339 FQ 340
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 5/266 (1%)
Query: 64 VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNC 123
V RL +A +F+ E+++ K + E + YG+ ++ +VF +M +C
Sbjct: 58 VLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDC 117
Query: 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV-DKGSLDSA 182
+ + ++ +L V + + +K++ ++G+ P + S N +IKA + G++D+
Sbjct: 118 DPSQKAYVTVLAILVEENQLNLAFKFYKNM-REIGLPPTVASLNVLIKALCRNDGTVDAG 176
Query: 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242
+ EM K+G D T+ TL+ G GR +A+K++ MV + P V +Y + ++G
Sbjct: 177 LKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLING 236
Query: 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMN 299
L K +A+ + EM+SK I P+VFT+ +L+ G +G +A + GC N
Sbjct: 237 LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 300 KAIFKLLVPFVCEKGDLDFAFNLCKR 325
+ L+ +C++ + A L R
Sbjct: 297 MVTYTTLITGLCKEQKIQEAVELLDR 322
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
Query: 113 KVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172
K+F EMP R C+ ++ L+ + DE LF ++ K P +V+Y ++I
Sbjct: 178 KIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEK-DCAPTVVTYTSLING 236
Query: 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232
++D A L EM+ KGI ++ T+++L+ G +GR A +++E M+ RPN
Sbjct: 237 LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292
+ +Y + GL E++ ++A+EL+ M + + PD + +I GF EA + +
Sbjct: 297 MVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD 356
Query: 293 K 293
+
Sbjct: 357 E 357
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 120/268 (44%), Gaps = 10/268 (3%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI+ + + A+K+F EM ++C TV+++ +L+ SK DE +++ K
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSK- 256
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
GIEP++ +Y++++ G A L M +G R +++T+ TL+ G + +A
Sbjct: 257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEA 316
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA---- 273
++ + M ++P+ Y + G + ++A + EM I P+ T+
Sbjct: 317 VELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKT 376
Query: 274 ---LIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKL--LVPFVCEKGDLDFAFNLCKRTFS 328
+++G + + G++ + L LV +C+KG+ A L +
Sbjct: 377 SNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVT 436
Query: 329 ERCLVDQAPLQLVVDRLAKELRVEEAKE 356
+ C+ + +L++ + V EA +
Sbjct: 437 DGCIPSKGTWKLLIGHTLDKTIVGEASD 464
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA-LELVGEMRSKEINPDVFTFYALI 275
A K ++ M + + P V S N + L T A L++ EM + +PD +T+ LI
Sbjct: 140 AFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLI 199
Query: 276 KGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332
G G ++EAK+ + + C + L+ +C ++D A + S+
Sbjct: 200 SGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIE 259
Query: 333 VDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNL 371
+ ++D L K+ R +A EL E+ CR N+
Sbjct: 260 PNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG-CRPNM 297
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 147/312 (47%), Gaps = 16/312 (5%)
Query: 55 TNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR------LIALYGKAAMF 108
+N ++ ++ A++ R E + + + +GFT LI +
Sbjct: 163 SNDSVFDLLIRTYVQARKLR------EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWV 216
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
E A V+ E+ V + N ++ A K ++V G F + G+ PD+V+YNT
Sbjct: 217 ELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKV-GTFLSQVQEKGVYPDIVTYNT 275
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I A+ KG ++ A L+ M KG + T+NT++ G +G++ A++++ M+
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAK 288
+ P+ +Y + L + + ++ +MRS+++ PD+ F +++ F GNL++A
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 289 RWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL 345
++N ++G + I+ +L+ C KG + A NL + C +D ++ L
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455
Query: 346 AKELRVEEAKEL 357
K + EA +L
Sbjct: 456 CKRKMLGEADKL 467
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI Y + M A + +EM + C V+++N +L K E D LF ++ +
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER- 474
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
+ PD + +I G+L +A L +M++K IRLD++T+NTLL GF G A
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
++IW MV+ + P SY+ ++ L + +A + EM SK I P V ++IKG
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 278 FVNEGNLEEAKRWYNK 293
+ GN + + + K
Sbjct: 595 YCRSGNASDGESFLEK 610
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 16/242 (6%)
Query: 113 KVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172
KVF +M R+ ++ F++++ S D+ F + G+ PD V Y +I+
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA-GLIPDNVIYTILIQG 419
Query: 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232
+ KG + A L EM ++G +D++T+NT+L G +A+K++ M + P+
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479
Query: 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR-WY 291
+ +DG + A+EL +M+ K I DV T+ L+ GF G+++ AK W
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 292 NKSGCGMNKAI------FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL 345
+ ++K I + +LV +C KG L AF R + E + P ++ + +
Sbjct: 540 DM----VSKEILPTPISYSILVNALCSKGHLAEAF----RVWDEMISKNIKPTVMICNSM 591
Query: 346 AK 347
K
Sbjct: 592 IK 593
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 102/194 (52%), Gaps = 3/194 (1%)
Query: 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP 161
+GK + A++++ +M + T +S++ L+ A + E ++ ++ K I+P
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK-NIKP 583
Query: 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIW 221
++ N++IK + G+ + L +M +G D I++NTL+ GF + A +
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLV 643
Query: 222 ETMV--NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFV 279
+ M + P+V +YN+ L G + Q K+A ++ +M + +NPD T+ +I GFV
Sbjct: 644 KKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFV 703
Query: 280 NEGNLEEAKRWYNK 293
++ NL EA R +++
Sbjct: 704 SQDNLTEAFRIHDE 717
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 18/250 (7%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
+I G K NL+ ++ F+K + R R + Y + +EI
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKE-KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM--- 541
Query: 87 KDISKE------GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVN 139
+SKE ++ + AL K + E A +V+DEM +N + TV+ N+++ G C +
Sbjct: 542 --VSKEILPTPISYSILVNALCSKGHLAE-AFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 140 SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK--GIRLD 197
D L K + G PD +SYNT+I FV + ++ A L+ +ME++ G+ D
Sbjct: 599 GNASDGESFLEKMISE--GFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
+ T+N++L GF + +AE + M+ V P+ +Y ++G + +A +
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHD 716
Query: 258 EMRSKEINPD 267
EM + +PD
Sbjct: 717 EMLQRGFSPD 726
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 134/315 (42%), Gaps = 16/315 (5%)
Query: 54 RTNTGIYTGTVQRLANA----KRFRWIEEILEHQKQYKDISKEGFTAR-LIALYGKAAMF 108
R+ GI T+ + NA + + L Q Q K + + T LI+ Y +
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLS-QVQEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
E A ++ + MPG+ V ++N ++ K++ +F ++ G+ PD +Y +
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRS 345
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
++ KG + + +M + + DL+ F++++ F +G A + ++
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAK 288
+ P+ Y + G + A+ L EM + DV T+ ++ G L EA
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465
Query: 289 RWYNKSGCGMNKAIF------KLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVV 342
+ +N+ +A+F +L+ C+ G+L A L ++ +R +D ++
Sbjct: 466 KLFNEM---TERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522
Query: 343 DRLAKELRVEEAKEL 357
D K ++ AKE+
Sbjct: 523 DGFGKVGDIDTAKEI 537
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 8/236 (3%)
Query: 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIE 160
L+ KA+ A + D+M R C+ ++++ ++ D L K + K IE
Sbjct: 200 LHNKAS---EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIE 255
Query: 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI 220
D+V YNTII +D A L EM+ KGIR D+ T+++L+ + GR++DA ++
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN 280
M+ + PNV +++A +D E + +A +L EM + I+PD+FT+ +LI GF
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 375
Query: 281 EGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333
L+EAK + C N + L+ C+ ++ L R S+R LV
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELF-REMSQRGLV 430
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 154/307 (50%), Gaps = 13/307 (4%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF----RWIEEILE 81
++I G+ K ++ ++ F + + G R + Y+ + L N R+ R + +++E
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKG-IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE 321
Query: 82 HQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK 141
+ ++ F+A LI + K A K++DEM R+ + + ++++L+
Sbjct: 322 RKINPNVVT---FSA-LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377
Query: 142 KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
+ DE +F+ + K P++V+Y+T+IK F ++ L EM ++G+ + +T+
Sbjct: 378 RLDEAKHMFELMISK-DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 202 NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261
TL+ GF+ +A+ +++ MV++ V PN+ +YN LDGL + KA+ + ++
Sbjct: 437 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 496
Query: 262 KEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKGDLDF 318
+ PD++T+ +I+G G +E+ + + G N + ++ C KG +
Sbjct: 497 STMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEE 556
Query: 319 AFNLCKR 325
A +L K+
Sbjct: 557 ADSLLKK 563
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 4/217 (1%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
++A +F +M +++ FN LL A KF+ V L + + LGI DL +Y+
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQM-QTLGISHDLYTYSI 123
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
I F + L A +L +M K G D++T ++LL G+ + R +DA + + MV M
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAK 288
+P+ ++ + GL + + +A+ LV +M + PD+ T+ ++ G G+++ A
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 289 RWYNKSGCGMNKA---IFKLLVPFVCEKGDLDFAFNL 322
K G +A I+ ++ +C+ +D A NL
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNL 280
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 40/317 (12%)
Query: 80 LEHQKQYKDISKEGFTARL-IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV 138
L Q Q IS + +T + I + + + A V +M E +++ ++LL
Sbjct: 105 LGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYC 164
Query: 139 NSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL 198
+SK+ + L + ++G +PD ++ T+I A L+ +M ++G + DL
Sbjct: 165 HSKRISDAVALVDQMV-EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223
Query: 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258
+T+ T++ G G A + + M + +V YN +DGL K AL L E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283
Query: 259 MRSKEINPDVF-----------------------------------TFYALIKGFVNEGN 283
M +K I PDVF TF ALI FV EG
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 284 LEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340
L EA++ Y+ K + + L+ C LD A ++ + S+ C +
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 341 VVDRLAKELRVEEAKEL 357
++ K RVEE EL
Sbjct: 404 LIKGFCKAKRVEEGMEL 420
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 104/232 (44%), Gaps = 2/232 (0%)
Query: 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVF 115
N Y+ ++ AKR E+ Q + LI + +A +NA+ VF
Sbjct: 397 NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 456
Query: 116 DEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175
+M +L++N LL + K + +F+ L + +EPD+ +YN +I+
Sbjct: 457 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL-QRSTMEPDIYTYNIMIEGMCK 515
Query: 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS 235
G ++ L + KG+ ++I +NT++ GF G +A+ + + M PN +
Sbjct: 516 AGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGT 575
Query: 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
YN + + + + EL+ EMRS D T L+ +++G L+++
Sbjct: 576 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLDKS 626
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 4/266 (1%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I+G KE N + + + G + YT + + A E L+ +
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHG-LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 86 YKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKFD 144
E L+ + + A +V EM +V+++NAL+ G CV K D
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
+ + +D+ K G+ PD+VSY+T++ F +D A + EM +KGI+ D IT+++L
Sbjct: 434 AI-AVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSL 491
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ GF R +A ++E M+ + + P+ +Y A ++ +E +KAL+L EM K +
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 265 NPDVFTFYALIKGFVNEGNLEEAKRW 290
PDV T+ LI G + EAKR
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRL 577
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 139/280 (49%), Gaps = 15/280 (5%)
Query: 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK-FDEVDGLFKDLPHKL 157
++L KA + + MPG VLS+NA+L A + SK+ + +FK++
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPG------VLSYNAVLDATIRSKRNISFAENVFKEMLES- 199
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
+ P++ +YN +I+ F G++D A TL +ME KG +++T+NTL+ G+ + D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
K+ +M + PN+ SYN ++GL E + K+ ++ EM + + D T+ LIKG
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 278 FVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334
+ EGN +A + + G + + L+ +C+ G+++ A + +
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379
Query: 335 QAPLQLVVDRLAKELRVEEA----KELVELGKTNSYCRYN 370
+ +VD +++ + EA +E+ + G + S YN
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 36/293 (12%)
Query: 37 LKRLVDKFK--KSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGF 94
L+++ D FK +S L N Y + L R + + +L + E
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312
Query: 95 TARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-------------------- 134
LI Y K F A + EM +V+++ +L+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 135 --GACVNSKKFDE-VDGL----FKDLPHKL-------GIEPDLVSYNTIIKAFVDKGSLD 180
G C N + + VDG + + +++ G P +V+YN +I G ++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARL 240
A +L +M++KG+ D+++++T+L GF + +A ++ MV ++P+ +Y++ +
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 241 DGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK 293
G +++TK+A +L EM + PD FT+ ALI + EG+LE+A + +N+
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNE 545
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 159/361 (44%), Gaps = 40/361 (11%)
Query: 26 SVIRGIYKENNLKR---LVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEH 82
S+I + K N+ R +D+ + RT T + G Q+ + +R + E+
Sbjct: 350 SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM--- 406
Query: 83 QKQYKDISKEGFTARLIAL------YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA 136
+ GF+ ++ + E+A V ++M + V+S++ +L
Sbjct: 407 -------NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 137 CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRL 196
S DE + +++ K GI+PD ++Y+++I+ F ++ A L EM + G+
Sbjct: 460 FCRSYDVDEALRVKREMVEK-GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518
Query: 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256
D T+ L+ + G A ++ MV V P+V +Y+ ++GL + +T++A L+
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Query: 257 GEMRSKEINPDVFTFY---------------ALIKGFVNEGNLEEAKRWYNKSGCGMNK- 300
++ +E P T++ +LIKGF +G + EA + + +S G N
Sbjct: 579 LKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF-ESMLGKNHK 637
Query: 301 ---AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
+ +++ C GD+ A+ L K L+ + +V L KE +V E +
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSV 697
Query: 358 V 358
+
Sbjct: 698 I 698
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 118/266 (44%), Gaps = 6/266 (2%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI Y K ++ K+ M + E ++S+N ++ + EV + ++ +
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR- 304
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G D V+YNT+IK + +G+ A + EM + G+ +IT+ +L+ G A
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
+ + M + PN R+Y +DG + + +A ++ EM +P V T+ ALI G
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Query: 278 FVNEGNLEEAKRW---YNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL-V 333
G +E+A + G + + ++ C D+D A + KR E+ +
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV-KREMVEKGIKP 483
Query: 334 DQAPLQLVVDRLAKELRVEEAKELVE 359
D ++ ++ R +EA +L E
Sbjct: 484 DTITYSSLIQGFCEQRRTKEACDLYE 509
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 5/226 (2%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A + D M + C+ ++++ ++ D L K + IEP +V YNTII
Sbjct: 205 AVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTII 263
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
A + +++ A L EM+ KGIR +++T+N+L+ + GR++DA ++ M+ +
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
PNV +++A +D E + +A +L EM + I+PD+FT+ +LI GF L+EAK
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 291 YN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333
+ C N + L+ C+ +D L R S+R LV
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF-REMSQRGLV 428
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 147/302 (48%), Gaps = 13/302 (4%)
Query: 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF----RW 75
G ++I + N+ ++ F + + G R N Y ++ L N R+ R
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMDNKG-IRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 76 IEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLG 135
+ +++E + ++ F+A LI + K A K++DEM R+ + + ++++L+
Sbjct: 314 LSDMIERKINPNVVT---FSA-LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Query: 136 ACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR 195
+ DE +F+ + K P++V+YNT+IK F +D L EM ++G+
Sbjct: 370 GFCMHDRLDEAKHMFELMISK-DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428
Query: 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255
+ +T+ TL+ GF+ +A+ +++ MV+ V P++ +Y+ LDGL + + AL +
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVV 488
Query: 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCE 312
++ ++ PD++T+ +I+G G +E+ + + G N + ++ C
Sbjct: 489 FEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 548
Query: 313 KG 314
KG
Sbjct: 549 KG 550
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 159/368 (43%), Gaps = 44/368 (11%)
Query: 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGI--YTGTVQRLANAKRFRWIEEILEHQKQYKD 88
I + N+LK L D D+ + R I ++ + +A +F + + E Q Q
Sbjct: 54 INRLNDLK-LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGE-QMQNLG 111
Query: 89 ISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVD 147
IS +T + LI + + + A V +M E +++ N+LL + + +
Sbjct: 112 ISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV 171
Query: 148 GLFKDLPHKLGIEPDLVSYNTIIK------------AFVD-------------------- 175
L + ++G +PD ++NT+I A VD
Sbjct: 172 SLVGQMV-EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNG 230
Query: 176 ---KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232
+G +D A +LL +ME+ I ++ +NT++ + DA ++ M N +RPN
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
Query: 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292
V +YN+ + L + A L+ +M ++INP+V TF ALI FV EG L EA++ Y+
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350
Query: 293 ---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL 349
K + + L+ C LD A ++ + S+ C + ++ K
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410
Query: 350 RVEEAKEL 357
RV+E EL
Sbjct: 411 RVDEGMEL 418
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 2/232 (0%)
Query: 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVF 115
N Y ++ AKR E+ Q + LI + +A +NA+ VF
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 116 DEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175
+M +++++ LL N+ K + +F+ L + +EPD+ +YN +I+
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL-QRSKMEPDIYTYNIMIEGMCK 513
Query: 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS 235
G ++ L + KG++ +++T+ T++ GF G +A+ ++ M P+ +
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573
Query: 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
YN + + + EL+ EMRS D T L+ +++G L+++
Sbjct: 574 YNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI-GLVTNMLHDGRLDKS 624
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 8/236 (3%)
Query: 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIE 160
L+ KA+ A + D M R C+ + ++ ++ D L K + K IE
Sbjct: 197 LHNKAS---EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIE 252
Query: 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI 220
D+V Y TII A + +++ A L EM+ KGIR +++T+N+L+ + GR++DA ++
Sbjct: 253 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 312
Query: 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN 280
M+ + PNV +++A +D E + +A +L EM + I+PD+FT+ +LI GF
Sbjct: 313 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 372
Query: 281 EGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333
L+EAK + C N + L+ C+ ++ L R S+R LV
Sbjct: 373 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF-REMSQRGLV 427
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 149/296 (50%), Gaps = 13/296 (4%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF----RWIEEILE 81
++I + N+ ++ F + + G R N Y ++ L N R+ R + +++E
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKG-IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 82 HQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK 141
+ ++ F+A LI + K A K++DEM R+ + + ++++L+
Sbjct: 319 RKINPNVVT---FSA-LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374
Query: 142 KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
+ DE +F+ + K P++V+YNT+IK F ++ L EM ++G+ + +T+
Sbjct: 375 RLDEAKHMFELMISK-DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 433
Query: 202 NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261
NTL+ G + G A+KI++ MV+ V P++ +Y+ LDGL + +KAL + ++
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493
Query: 262 KEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKG 314
++ PD++T+ +I+G G +E+ + + G N I+ ++ C KG
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 145/315 (46%), Gaps = 6/315 (1%)
Query: 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIE-EILEHQKQYKDISKEGF 94
N R D + SD+ + N + T + A K + +E E L + + I + F
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361
Query: 95 T-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
T + LI + + A+ +F+ M ++C V+++N L+ +K+ +E LF+++
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
+ G+ + V+YNT+I+ G D A + +M G+ D+IT++ LL G G+
Sbjct: 422 SQR-GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
A ++E + + P++ +YN ++G+ + + +L + K + P+V +
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540
Query: 274 LIKGFVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330
+I GF +G EEA R + G N + L+ GD + L K S
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600
Query: 331 CLVDQAPLQLVVDRL 345
+ D + + +V++ L
Sbjct: 601 FVGDASTISMVINML 615
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 4/218 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
++A +F EM +++ FN LL A KFD V L + + L I DL SYN
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERM-QNLRISYDLYSYN 119
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I F + L A +L +M K G D++T ++LL G+ R ++A + + M M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+PN ++N + GL + + +A+ L+ M ++ PD+FT+ ++ G G+++ A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 288 KRWYNKSGCGMNKA---IFKLLVPFVCEKGDLDFAFNL 322
K G +A I+ ++ +C +++ A NL
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNL 277
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 3/252 (1%)
Query: 38 KRLVDKFKKSSDLGR--FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95
KR+ D F ++ R R N YT V L N+ R+ +L + K
Sbjct: 204 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 263
Query: 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPH 155
+ L+ + K A+++F+EM + + ++++++L+ + DE + +F DL
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF-DLMV 322
Query: 156 KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215
G D+VSYNT+I F ++ L EM ++G+ + +T+NTL+ GF+ G
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382
Query: 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
A++ + M + P++ +YN L GL + +KAL + +M+ +E++ D+ T+ +I
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442
Query: 276 KGFVNEGNLEEA 287
+G G +EEA
Sbjct: 443 RGMCKTGKVEEA 454
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 156/352 (44%), Gaps = 48/352 (13%)
Query: 24 IGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQ 83
IGS++ G + N + V K ++G ++ + Y + L KR
Sbjct: 158 IGSLVNGFCRRNRVSDAVSLVDKMVEIG-YKPDIVAYNAIIDSLCKTKRV---------- 206
Query: 84 KQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF 143
+A F E+ + V+++ AL+ NS ++
Sbjct: 207 -------------------------NDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241
Query: 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT 203
+ L D+ K I P++++Y+ ++ AFV G + A L EM + I D++T+++
Sbjct: 242 SDAARLLSDMIKK-KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300
Query: 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263
L+ G + R +A ++++ MV+ +V SYN ++G K+ + ++L EM +
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 264 INPDVFTFYALIKGFVNEGNLEEAKRWYNKS---GCGMNKAIFKLLVPFVCEKGDLDFAF 320
+ + T+ LI+GF G++++A+ ++++ G + + +L+ +C+ G+L+ A
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420
Query: 321 NLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLK 372
+ + +D V+ + K +VEEA L +C +LK
Sbjct: 421 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL--------FCSLSLK 464
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 1/186 (0%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
+ A ++FD M + C V+S+N L+ +K+ ++ LF+++ + G+ + V+YN
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR-GLVSNTVTYN 369
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
T+I+ F G +D A +M+ GI D+ T+N LL G NG A I+E M
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+ ++ +Y + G+ + ++A L + K + PD+ T+ ++ G +G L E
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 489
Query: 288 KRWYNK 293
+ Y K
Sbjct: 490 EALYTK 495
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 1/182 (0%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
+A +F +M +++ FN LL A V KK+D V L K + LGI DL ++N
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKM-EVLGIRNDLYTFN 124
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I F + A ++L +M K G D +T +L+ GF R +DA + + MV +
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+P++ +YNA +D L K+ A + E+ K I P+V T+ AL+ G N +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 288 KR 289
R
Sbjct: 245 AR 246
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 102/218 (46%), Gaps = 10/218 (4%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI + KA E+ K+F EM R +++N L+ + D+ F +
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF-F 394
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
GI PD+ +YN ++ D G L+ A + +M+K+ + LD++T+ T++ G G+ +A
Sbjct: 395 GISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 454
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
++ ++ ++P++ +Y + GL + + L +M+ + + + T
Sbjct: 455 WSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT------- 507
Query: 278 FVNEGNLEEAKRWYNKS-GCGMNKAIFKLLVPFVCEKG 314
+++G++ + K CG ++ K + VC+K
Sbjct: 508 -LSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKA 544
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%)
Query: 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNA 238
L+ A L +M K ++ FN LL ++ + + M + +R ++ ++N
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK 293
++ Q AL ++G+M PD T +L+ GF + +A +K
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDK 180
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 41/288 (14%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKFDEVDGLFKDLPHKLGIEP-------- 161
A ++ D M + T+++ NAL+ G C+N K D V L D + G +P
Sbjct: 161 ALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV--LLIDRMVETGFQPNEVTYGPV 218
Query: 162 ---------------------------DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI 194
D V Y+ II GSLD+A L EME KG
Sbjct: 219 LKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 278
Query: 195 RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254
+ D+I + TL+ GF GR+ D K+ M+ + P+V +++A +D E + ++A E
Sbjct: 279 KADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEE 338
Query: 255 LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVC 311
L EM + I+PD T+ +LI GF E L++A + GCG N F +L+ C
Sbjct: 339 LHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYC 398
Query: 312 EKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
+ +D L ++ + D ++ + ++E AKEL +
Sbjct: 399 KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 10/293 (3%)
Query: 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT-ARLIALYGKAAMFENARKVFDEM 118
++ + + R EE+ + Q + IS + T LI + K + A + D M
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQ-RGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378
Query: 119 PGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178
+ C + +FN L+ + D+ LF+ + + G+ D V+YNT+I+ F + G
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR-GVVADTVTYNTLIQGFCELGK 437
Query: 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNA 238
L+ A L EM + +R D++++ LL G NG A +I+E + + ++ YN
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497
Query: 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SG 295
+ G+ + A +L + K + PDV T+ +I G +G+L EA + K G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 296 CGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC--LVDQAPLQLVVDRLA 346
N + +L+ +GD + L + +RC VD + +++VVD L+
Sbjct: 558 HSPNGCTYNILIRAHLGEGDATKSAKLIEEI--KRCGFSVDASTVKMVVDMLS 608
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 130/260 (50%), Gaps = 10/260 (3%)
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
K +NA +F+EM + + ++ + L+ + ++D+ L +D+ + I PD+
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR-KITPDV 317
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
V+++ +I FV +G L A L EM ++GI D +T+ +L+ GF + A + +
Sbjct: 318 VAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDL 377
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
MV+ PN+R++N ++G LEL +M + + D T+ LI+GF G
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437
Query: 284 LEEAKRWYNKSGCGMNKAI------FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAP 337
LE AK + + +++ + +K+L+ +C+ G+ + A + ++ + +D
Sbjct: 438 LEVAKELFQEM---VSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Query: 338 LQLVVDRLAKELRVEEAKEL 357
+++ + +V++A +L
Sbjct: 495 YNIIIHGMCNASKVDDAWDL 514
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 4/265 (1%)
Query: 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPH 155
+RL ++ + ++ + +M + + + + ++ C +K +
Sbjct: 76 SRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKII- 134
Query: 156 KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215
KLG EPD V+++T+I +G + A L+ M + G + LIT N L+ G NG+ +
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS 194
Query: 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
DA + + MV +PN +Y L + QT A+EL+ +M ++I D + +I
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254
Query: 276 KGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332
G +G+L+ A +N+ G + I+ L+ C G D L + +
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT 314
Query: 333 VDQAPLQLVVDRLAKELRVEEAKEL 357
D ++D KE ++ EA+EL
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEEL 339
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 5/220 (2%)
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
V+ K+ D VD LF+++ P L+ ++ + D L +ME KGI +
Sbjct: 49 VDIKEDDAVD-LFQEMTRSRP-RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHN 106
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
L T + ++ + + A ++ + P+ +++ ++GL +E + +ALELV
Sbjct: 107 LYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVD 166
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKG 314
M P + T AL+ G G + +A ++ +G N+ + ++ +C+ G
Sbjct: 167 RMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSG 226
Query: 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA 354
A L ++ + +D +++D L K+ ++ A
Sbjct: 227 QTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNA 266
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168
E A ++F+++ E + +N ++ N+ K D+ LF LP K G++PD+ +YN
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNI 532
Query: 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228
+I KGSL A+ L +ME+ G + T+N L+ G + K+ E +
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592
Query: 229 VRPNVRSYNARLDGLAIEKQTKKALELV 256
+ + +D L+ + K L+++
Sbjct: 593 FSVDASTVKMVVDMLSDGRLKKSFLDML 620
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 154/342 (45%), Gaps = 4/342 (1%)
Query: 35 NNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGF 94
N+LK + K S G + + + ++ L A + R +LE Y + E
Sbjct: 168 NSLKLVEISHAKMSVWG-IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226
Query: 95 TARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLP 154
++ Y + + A ++ ++M C + +S N ++ + ++ +++
Sbjct: 227 FTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286
Query: 155 HKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRF 214
++ G PD ++NT++ G + A ++ M ++G D+ T+N+++ G G
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346
Query: 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYAL 274
+A ++ + M+ + PN +YN + L E Q ++A EL + SK I PDV TF +L
Sbjct: 347 KEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406
Query: 275 IKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331
I+G N A + + GC ++ + +L+ +C KG LD A N+ K+ C
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466
Query: 332 LVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLKF 373
++D K + EA+E+ + + + R ++ +
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 143/303 (47%), Gaps = 7/303 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
+++ G+ K ++K ++ G + + Y + L + E+L+ Q
Sbjct: 300 TLVNGLCKAGHVKHAIEIMDVMLQEG-YDPDVYTYNSVISGLCKLGEVKEAVEVLD-QMI 357
Query: 86 YKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
+D S T LI+ K E A ++ + + V +FN+L+ ++
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR 417
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
LF+++ K G EPD +YN +I + KG LD A +L +ME G +IT+NTL
Sbjct: 418 VAMELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ GF + +AE+I++ M V N +YN +DGL ++ + A +L+ +M +
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536
Query: 265 NPDVFTFYALIKGFVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321
PD +T+ +L+ F G++++A + +GC + + L+ +C+ G ++ A
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596
Query: 322 LCK 324
L +
Sbjct: 597 LLR 599
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 154/358 (43%), Gaps = 23/358 (6%)
Query: 10 CSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN 69
CS+S + + ++ G KE ++ ++ ++ S+ F + + V L
Sbjct: 255 CSWSNVS-------VNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCK 307
Query: 70 AKRFRWIEEILEHQKQYKDISKEGFTA------RLIALYGKAAMFENARKVFDEMPGRNC 123
A + EI++ Q EG+ +I+ K + A +V D+M R+C
Sbjct: 308 AGHVKHAIEIMDVMLQ------EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361
Query: 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSAN 183
+++N L+ + +E L + L K GI PD+ ++N++I+ + A
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTRNHRVAM 420
Query: 184 TLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGL 243
L EM KG D T+N L+ S G+ +A + + M +V +YN +DG
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 244 AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNK 300
+T++A E+ EM ++ + T+ LI G +E+A + ++ G +K
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 540
Query: 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+ L+ C GD+ A ++ + S C D ++ L K RVE A +L+
Sbjct: 541 YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI + KA A ++FDEM + +++N L+ S++ ++ L + +
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME- 534
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G +PD +YN+++ F G + A ++ M G D++T+ TL+ G GR A
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594
Query: 218 EKIWET--MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEM-RSKEINPDVFTFYAL 274
K+ + M +N+ P+ +YN + GL +++T +A+ L EM E PD ++ +
Sbjct: 595 SKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652
Query: 275 IKGFVNEG 282
+G N G
Sbjct: 653 FRGLCNGG 660
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 43/311 (13%)
Query: 103 GKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD 162
G++ F++ +K+ ++M CE +F L+ + + DE+ + + + G++PD
Sbjct: 94 GRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPD 153
Query: 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN-------------------- 202
YN ++ VD SL +M GI+ D+ TFN
Sbjct: 154 THFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLE 213
Query: 203 ---------------TLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247
T++ G+ G A +I E MV + S N + G E
Sbjct: 214 DMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEG 273
Query: 248 QTKKALELVGEMRSKE-INPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIF 303
+ + AL + EM +++ PD +TF L+ G G+++ A + + G + +
Sbjct: 274 RVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTY 333
Query: 304 KLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVEL--- 360
++ +C+ G++ A + + + C + ++ L KE +VEEA EL +
Sbjct: 334 NSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTS 393
Query: 361 -GKTNSYCRYN 370
G C +N
Sbjct: 394 KGILPDVCTFN 404
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 18/270 (6%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGI------YTGTVQRLANAKRFRWIEEI 79
++I + KEN + +++++L R T+ GI + +Q L + R E+
Sbjct: 370 TLISTLCKEN-------QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 80 LEHQKQYKDISKEGFTARLI--ALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGAC 137
E + K + FT ++ +L K + E A + +M C ++V+++N L+
Sbjct: 423 FEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDE-ALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
+ K E + +F ++ G+ + V+YNT+I ++ A L+ +M +G + D
Sbjct: 481 CKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPD 539
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
T+N+LL F G A I + M + P++ +Y + GL + + A +L+
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLR 599
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
++ K IN + +I+G + EA
Sbjct: 600 SIQMKGINLTPHAYNPVIQGLFRKRKTTEA 629
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 39/296 (13%)
Query: 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP 161
Y + +AR+VFD+M V +FN L+ K ++ G+ + + + + P
Sbjct: 179 YPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNP 238
Query: 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIW 221
D V+YNTI+KA KG L LL +M+K G+ + +T+N L+ G+ G +A +I
Sbjct: 239 DNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIV 298
Query: 222 ETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE 281
E M NV P++ +YN ++GL ++ LEL+ M+S ++ PDV T+ LI G
Sbjct: 299 ELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFEL 358
Query: 282 GNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEK------------------------- 313
G EA++ + G N+ + + ++C++
Sbjct: 359 GLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVT 418
Query: 314 -----------GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
GDL A + + + ++ L ++D L KE +++EA L+
Sbjct: 419 YHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLL 474
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 47/290 (16%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
ARK+ ++M + ++ N L +K + V K+L G PD+V+Y+T+I
Sbjct: 364 ARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLI 423
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT--------------------------- 203
KA++ G L A ++ EM +KGI+++ IT NT
Sbjct: 424 KAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFI 483
Query: 204 --------LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255
L++GF+ + A ++W+ M + + P V ++N+ + GL +T+ A+E
Sbjct: 484 VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEK 543
Query: 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFK-------LLVP 308
E+ + PD TF ++I G+ EG +E+A +YN+S K FK +L+
Sbjct: 544 FDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESI----KHSFKPDNYTCNILLN 599
Query: 309 FVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+C++G + A N ER VD ++ K+ +++EA +L+
Sbjct: 600 GLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLL 648
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 3/268 (1%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I+ K +L ++ ++ G + NT + L ++ +L +
Sbjct: 421 TLIKAYLKVGDLSGALEMMREMGQKG-IKMNTITLNTILDALCKERKLDEAHNLLNSAHK 479
Query: 86 YKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE 145
I E LI + + E A +++DEM TV +FN+L+G + K +
Sbjct: 480 RGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTEL 539
Query: 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205
F +L G+ PD ++N+II + +G ++ A E K + D T N LL
Sbjct: 540 AMEKFDELAES-GLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILL 598
Query: 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEIN 265
G G A + T++ V +YN + +K+ K+A +L+ EM K +
Sbjct: 599 NGLCKEGMTEKALNFFNTLIEEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGLE 657
Query: 266 PDVFTFYALIKGFVNEGNLEEAKRWYNK 293
PD FT+ + I + +G L E K
Sbjct: 658 PDRFTYNSFISLLMEDGKLSETDELLKK 685
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 106/214 (49%), Gaps = 7/214 (3%)
Query: 157 LGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLG---FYSNGR 213
L P ++ + A++ +G A + +M + ++ +L+T NTLL+G + S+
Sbjct: 125 LSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFS 184
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK-EINPDVFTFY 272
+ A ++++ MV + V NV+++N ++G +E + + AL ++ M S+ ++NPD T+
Sbjct: 185 ISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244
Query: 273 ALIKGFVNEGNLEEAKRW---YNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329
++K +G L + K K+G N+ + LV C+ G L AF + +
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT 304
Query: 330 RCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363
L D ++++ L + E EL++ K+
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGLELMDAMKS 338
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 160 EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEK 219
E D V+YNT+I AF L A LL EME+KG+ D T+N+ + +G+ ++ ++
Sbjct: 622 EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDE 681
Query: 220 IWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFV 279
+ ++ ++ + + + Q + +E+N + + +I
Sbjct: 682 L------------LKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELC 729
Query: 280 NEGNLEEAKRWY 291
+ G L+E R Y
Sbjct: 730 SRGRLKEHSRSY 741
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 132/257 (51%), Gaps = 4/257 (1%)
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
K F++A +F+EM + + V+++++L+G N K+D+ + +++ + I PD+
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDV 315
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
V+++ +I FV +G L A L EM +GI D IT+N+L+ GF +A ++++
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
MV+ P++ +Y+ ++ K+ + L E+ SK + P+ T+ L+ GF G
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 284 LEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340
L AK + + G + + +L+ +C+ G+L+ A + ++ R + +
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 341 VVDRLAKELRVEEAKEL 357
++ + +V++A L
Sbjct: 496 IIHGMCNASKVDDAWSL 512
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 128/252 (50%), Gaps = 5/252 (1%)
Query: 94 FTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
F+A LI ++ K A+++++EM R +++N+L+ E + +F DL
Sbjct: 318 FSA-LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DL 375
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
G EPD+V+Y+ +I ++ +D L E+ KG+ + IT+NTL+LGF +G+
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
A+++++ MV+ V P+V +Y LDGL + KALE+ +M+ + + +
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 274 LIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330
+I G N +++A + + G + + +++ +C+KG L A L ++ +
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 331 CLVDQAPLQLVV 342
C D +++
Sbjct: 556 CTPDDFTYNILI 567
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 112/214 (52%), Gaps = 4/214 (1%)
Query: 149 LFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF 208
LF+ + + I+ +V Y+ +I + GS D A +L EME KGI+ D++T+++L+ G
Sbjct: 232 LFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 209 YSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDV 268
++G++ D K+ M+ N+ P+V +++A +D E + +A EL EM ++ I PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 269 FTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325
T+ +LI GF E L EA + ++ GC + + +L+ C+ +D L +
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 326 TFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
S+ + + +V + ++ AKEL +
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 78 EILEHQKQYKDISKEGFTA------RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN 131
++LE ++ Y ++ G LI + K A ++FD M + CE +++++
Sbjct: 330 KLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS 389
Query: 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191
L+ + +K+ D+ LF+++ K G+ P+ ++YNT++ F G L++A L EM
Sbjct: 390 ILINSYCKAKRVDDGMRLFREISSK-GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 448
Query: 192 KGIRLDLITFNTLLLGFYSNGRFADAEKIWETM--------------------------- 224
+G+ ++T+ LL G NG A +I+E M
Sbjct: 449 RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDD 508
Query: 225 --------VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276
+ V+P+V +YN + GL + +A L +M+ PD FT+ LI+
Sbjct: 509 AWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR 568
Query: 277 GFVNEGNL 284
+ L
Sbjct: 569 AHLGGSGL 576
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 3/203 (1%)
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G +PD V+Y ++ G+ A L +ME++ I+ ++ ++ ++ +G F DA
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
++ M ++ +V +Y++ + GL + + +++ EM + I PDV TF ALI
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324
Query: 278 FVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334
FV EG L EAK YN+ G + + L+ C++ L A + S+ C D
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384
Query: 335 QAPLQLVVDRLAKELRVEEAKEL 357
++++ K RV++ L
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRL 407
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 37/285 (12%)
Query: 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD---------EVDGLFKDL------- 153
+A +F+ M T + FN L A +K++D E++G+ D+
Sbjct: 53 DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112
Query: 154 ------------------PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR 195
KLG EPD ++++T++ F +G + A L+ M + R
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255
DL+T +TL+ G GR ++A + + MV +P+ +Y L+ L + AL+L
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCE 312
+M + I V + +I +G+ ++A +N+ G + + L+ +C
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292
Query: 313 KGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
G D + + + D ++D KE ++ EAKEL
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKEL 337
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A ++F++M + +N ++ N+ K D+ LF L K G++PD+V+YN +I
Sbjct: 474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK-GVKPDVVTYNVMI 532
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
KGSL A+ L +M++ G D T+N L+ + ++ E M
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 592
Query: 231 PNVRSYNARLDGLAIEKQTKKALELV 256
+ + +D L+ + K L+++
Sbjct: 593 ADSSTIKMVIDMLSDRRLDKSFLDML 618
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 161/344 (46%), Gaps = 7/344 (2%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
+I G+ K+ +L + F + G F+ + Y + NA R+ ++L +
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKG-FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 87 KDISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE 145
K IS T + LI + K A ++ EM R +++N+L+ + +E
Sbjct: 328 K-ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205
+ DL G +PD++++N +I + +D L EM +G+ + +T+NTL+
Sbjct: 387 AIQMV-DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Query: 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEIN 265
GF +G+ A+K+++ MV+ VRP++ SY LDGL + +KALE+ G++ ++
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505
Query: 266 PDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNL 322
D+ + +I G N +++A + G ++ + +++ +C K L A L
Sbjct: 506 LDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADIL 565
Query: 323 CKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366
++ E D+ +++ + A EL+E K++ +
Sbjct: 566 FRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGF 609
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 3/204 (1%)
Query: 159 IEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAE 218
I+ D V Y+ II GSLD+A L EME KG + D+IT+NTL+ GF + GR+ D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 219 KIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGF 278
K+ M+ + PNV +++ +D E + ++A +L+ EM + I P+ T+ +LI GF
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 279 VNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335
E LEEA + + GC + F +L+ C+ +D L + + +
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438
Query: 336 APLQLVVDRLAKELRVEEAKELVE 359
+V + ++E AK+L +
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQ 462
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 8/281 (2%)
Query: 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156
RL + K +E + +M + ++ + + ++ +K + K
Sbjct: 93 RLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKI-MK 151
Query: 157 LGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216
LG EPD V +NT++ + + A L+ M + G + LIT NTL+ G NG+ +D
Sbjct: 152 LGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSD 211
Query: 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276
A + + MV +PN +Y L+ + QT A+EL+ +M + I D + +I
Sbjct: 212 AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271
Query: 277 GFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333
G +G+L+ A +N+ G + + L+ C G D L + +
Sbjct: 272 GLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP 331
Query: 334 DQAPLQLVVDRLAKELRVEEA----KELVELGKTNSYCRYN 370
+ +++D KE ++ EA KE+++ G + YN
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 99/230 (43%), Gaps = 4/230 (1%)
Query: 128 LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY 187
LS+ L + + K D+ LF+D+ + P ++ +N + A + L
Sbjct: 54 LSYRDKLSSGLVGIKADDAVDLFRDMIQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCK 112
Query: 188 EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247
+ME KGI + T + ++ F + + A ++ + P+ +N L+GL +E
Sbjct: 113 QMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLEC 172
Query: 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFK 304
+ +ALELV M P + T L+ G G + +A ++ +G N+ +
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
Query: 305 LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA 354
++ +C+ G A L ++ +D +++D L K+ ++ A
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA 282
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 8/208 (3%)
Query: 86 YKDISKEGFTAR------LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN 139
++++S G A L+ + ++ E A+K+F EM R ++S+ LL +
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 140 SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199
+ + ++ +F + K +E D+ Y II + +D A L + KG++LD
Sbjct: 486 NGELEKALEIFGKI-EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDAR 544
Query: 200 TFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259
+N ++ + A+ ++ M P+ +YN + + A EL+ EM
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604
Query: 260 RSKEINPDVFTFYALIKGFVNEGNLEEA 287
+S DV T +I ++ G L+++
Sbjct: 605 KSSGFPADVSTVKMVIN-MLSSGELDKS 631
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 6/237 (2%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
+I G K N + ++ F++ S G NT Y VQ + + +++ +
Sbjct: 409 LINGYCKANRIDDGLELFREMSLRGVI-ANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467
Query: 87 KDISKEGFTARLIALYGKA--AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
+ + + I L G E A ++F ++ E + + ++ N+ K D
Sbjct: 468 R--VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVD 525
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
+ LF LP K G++ D +YN +I K SL A+ L +M ++G D +T+N L
Sbjct: 526 DAWDLFCSLPLK-GVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNIL 584
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261
+ + A ++ E M + +V + ++ L+ + K L+++ R+
Sbjct: 585 IRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTRA 641
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI + + A A +M E ++++F +L+ + +F E L + L
Sbjct: 120 LIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIV-GL 178
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G EP++V YNTII + +KG +++A +L M+K GIR D++T+N+L+ + +G + +
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
+I M+ M + P+V +++A +D E Q +A + EM + +NP++ T+ +LI G
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLING 298
Query: 278 FVNEGNLEEAKRWYN 292
G L+EAK+ N
Sbjct: 299 LCIHGLLDEAKKVLN 313
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 132/268 (49%), Gaps = 8/268 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I + ++ + +D K +G R + Y + RL ++ + IL +
Sbjct: 189 TIIDSLCEKGQVNTALDVLKHMKKMG-IRPDVVTYNSLITRLFHSGTWGVSARILSDMMR 247
Query: 86 YKDISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKF 143
IS + T + LI +YGK A+K ++EM R+ ++++N+L+ G C++
Sbjct: 248 M-GISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGL-L 305
Query: 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT 203
DE + L K G P+ V+YNT+I + +D +L M + G+ D T+NT
Sbjct: 306 DEAKKVLNVLVSK-GFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNT 364
Query: 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263
L G+ G+F+ AEK+ MV+ V P++ ++N LDGL + KAL + +++ +
Sbjct: 365 LYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSK 424
Query: 264 INPDVFTFYALIKGFVNEGNLEEAKRWY 291
+ T+ +IKG +E+A WY
Sbjct: 425 TVVGIITYNIIIKGLCKADKVEDA--WY 450
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 119/250 (47%), Gaps = 4/250 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
F A + D++ G E V+ +N ++ + + + + K + K+GI PD+V+YN
Sbjct: 165 FYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMK-KMGIRPDVVTYN 223
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
++I G+ + +L +M + GI D+ITF+ L+ + G+ +A+K + M+
Sbjct: 224 SLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQR 283
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+V PN+ +YN+ ++GL I +A +++ + SK P+ T+ LI G+ +++
Sbjct: 284 SVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDG 343
Query: 288 KRW---YNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344
+ ++ G + + L C+ G A + R S D +++D
Sbjct: 344 MKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDG 403
Query: 345 LAKELRVEEA 354
L ++ +A
Sbjct: 404 LCDHGKIGKA 413
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 124/289 (42%), Gaps = 39/289 (13%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
F +A +F +M + +++ F+ LL A K++ V LF+ L LGI DL S+
Sbjct: 60 FNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHL-EMLGISHDLYSFT 118
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
T+I F L A + L +M K G ++TF +L+ GF RF +A + + +V +
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALE--------------------------------- 254
PNV YN +D L + Q AL+
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238
Query: 255 --LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPF 309
++ +M I+PDV TF ALI + EG L EAK+ YN + N + L+
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLING 298
Query: 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+C G LD A + S+ + +++ K RV++ +++
Sbjct: 299 LCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKIL 347
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI Y KA ++ K+ M + ++N L + KF + + +
Sbjct: 330 LINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMV-SC 388
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G+ PD+ ++N ++ D G + A L +++K + +IT+N ++ G + DA
Sbjct: 389 GVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDA 448
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263
++ ++ V P+V +Y + GL ++ ++A EL +M+ ++
Sbjct: 449 WYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKED 494
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 43/193 (22%)
Query: 138 VNSKKFDEVDGLFKDLP--HKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR 195
++S KF++ LF D+ H L P +V ++ ++ A ++ +L +E GI
Sbjct: 55 LHSIKFNDALTLFCDMAESHPL---PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGIS 111
Query: 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255
DL +F TL+ F R + AL
Sbjct: 112 HDLYSFTTLIDCFCRCARLS-----------------------------------LALSC 136
Query: 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK-SGCGM--NKAIFKLLVPFVCE 312
+G+M P + TF +L+ GF + EA ++ G G N I+ ++ +CE
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196
Query: 313 KGDLDFAFNLCKR 325
KG ++ A ++ K
Sbjct: 197 KGQVNTALDVLKH 209
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 153/314 (48%), Gaps = 10/314 (3%)
Query: 40 LVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDIS-KEGFTARL 98
L+ ++ S ++ +Y + + AK + IEE++ K K E F L
Sbjct: 78 LLPAYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNL 137
Query: 99 IALYGK-AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
+ +YG A A ++ MP C + SFN +L V++K FDE+ +F P KL
Sbjct: 138 MRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAP-KL 196
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G+E D N +IK + G+L++A LL E ++ R +++TF+ L+ GF + G+F +A
Sbjct: 197 GVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEA 256
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
K+ E M + P+ ++N + GL + + ++ ++L+ M+ K P+ T+ ++ G
Sbjct: 257 FKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYG 316
Query: 278 FVNEG-NLEEAKRWYNKSGCGMNKAI--FKLLVPFVCEKG---DLDFAF-NLCKRTFSER 330
+++ NLE + GM + +K +V +CE ++D+ + F +
Sbjct: 317 LLDKKRNLEAKEMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVPK 376
Query: 331 CLVDQAPLQLVVDR 344
L+ +Q VV +
Sbjct: 377 TLMWWKVVQCVVSK 390
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 68 ANAKRFRWIEEILEHQKQYKDISKEGFTAR-------------LIALYGKAAMFENARKV 114
++K F +I +L K + +I K +A LI ++ E A ++
Sbjct: 165 PSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQL 224
Query: 115 FDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV 174
DE P + V++F+ L+ N KF+E L + + K IEPD +++N +I
Sbjct: 225 LDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERM-EKERIEPDTITFNILISGLR 283
Query: 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVR 234
KG ++ LL M+ KG + T+ +L G R +A+++ M++ +RP+
Sbjct: 284 KKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISWGMRPSFL 343
Query: 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
SY + GL K + ++ +M + P ++ +++ V++ N
Sbjct: 344 SYKKMVLGLCETKSVVEMDWVLRQMVNHGFVPKTLMWWKVVQCVVSKNN 392
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 32/183 (17%)
Query: 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSY 236
G ++ A +L+ M G +FN +L S F + KI+ + + V +
Sbjct: 146 GRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCL 205
Query: 237 NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGC 296
N + GL + AL+L+ E ++ P+V TF LI+GF
Sbjct: 206 NILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGF------------------ 247
Query: 297 GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKE 356
C KG + AF L +R ER D +++ L K+ RVEE +
Sbjct: 248 --------------CNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGID 293
Query: 357 LVE 359
L+E
Sbjct: 294 LLE 296
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 141/300 (47%), Gaps = 8/300 (2%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
+I+G + N+ + V + G+ + Y + R +L+ +
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFGQ--PDVFAYNALINGFCKMNRIDDATRVLDRMRS- 186
Query: 87 KDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE 145
KD S + T +I + A KV +++ NC+ TV+++ L+ A + DE
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDE 246
Query: 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205
L ++ + G++PD+ +YNTII+ +G +D A ++ +E KG D+I++N LL
Sbjct: 247 ALKLMDEMLSR-GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEIN 265
+ G++ + EK+ M + PNV +Y+ + L + + ++A+ L+ M+ K +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365
Query: 266 PDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNL 322
PD +++ LI F EG L+ A + GC + + ++ +C+ G D A +
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 160 EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEK 219
+PD+ +YN +I F +D A +L M K D +T+N ++ S G+ A K
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214
Query: 220 IWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFV 279
+ +++ N +P V +Y ++ +E +AL+L+ EM S+ + PD+FT+ +I+G
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 280 NEGNLE---EAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336
EG ++ E R GC + + +L+ + +G + L + FSE+C +
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334
Query: 337 PLQLVVDRLAKELRVEEAKELVELGK 362
+++ L ++ ++EEA L++L K
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMK 360
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 127/276 (46%), Gaps = 10/276 (3%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
+E K+ +M C+ V++++ L+ K +E L K + K G+ PD SY+
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYD 372
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I AF +G LD A L M G D++ +NT+L NG+ A +I+ + +
Sbjct: 373 PLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 432
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
PN SYN L +AL ++ EM S I+PD T+ ++I EG ++EA
Sbjct: 433 GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEA 492
Query: 288 -KRWYNKSGCGMNKAI--FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344
+ + C + ++ + +++ C+ ++ A N+ + C ++ ++++
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552
Query: 345 LA----KELRVEEAKELVELGKTNSYC--RYNLKFP 374
+ + +E A +LV + + Y R + FP
Sbjct: 553 IGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTFP 588
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 8/262 (3%)
Query: 104 KAAMFEN----ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGI 159
+A M E A K+ DEM R + + ++N ++ D + ++L K G
Sbjct: 236 EATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK-GC 294
Query: 160 EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEK 219
EPD++SYN +++A +++G + L+ +M + +++T++ L+ +G+ +A
Sbjct: 295 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMN 354
Query: 220 IWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFV 279
+ + M + P+ SY+ + E + A+E + M S PD+ + ++
Sbjct: 355 LLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLC 414
Query: 280 NEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336
G ++A + K GC N + + + + GD A ++ S D+
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474
Query: 337 PLQLVVDRLAKELRVEEAKELV 358
++ L +E V+EA EL+
Sbjct: 475 TYNSMISCLCREGMVDEAFELL 496
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 4/177 (2%)
Query: 185 LLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244
LL M +KG D+I L+ GF++ A ++ E + +P+V +YNA ++G
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFC 169
Query: 245 IEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKA 301
+ A ++ MRSK+ +PD T+ +I + G L+ A + N+ C
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVI 229
Query: 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+ +L+ +G +D A L S D ++ + KE V+ A E+V
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMV 286
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 165/351 (47%), Gaps = 16/351 (4%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF----RWIEEILE 81
+VI + K ++ ++ F + + G R + Y+ + L N R+ R + ++LE
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKG-IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303
Query: 82 HQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK 141
+ ++ F + LI + K A K+FDEM R+ + ++++N+L+
Sbjct: 304 RKINPNVVT---FNS-LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 142 KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
+ DE +F + K + PD+V+YNT+I F + L +M ++G+ + +T+
Sbjct: 360 RLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTY 418
Query: 202 NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261
TL+ GF+ +A+ +++ MV+ V PN+ +YN LDGL + +KA+ + ++
Sbjct: 419 TTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQK 478
Query: 262 KEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKGDLDF 318
++ PD++T+ + +G G +E+ + + G + + ++ C+KG +
Sbjct: 479 SKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEE 538
Query: 319 AFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRY 369
A+ L + + L D ++ LR + EL K CR+
Sbjct: 539 AYTLFIKMKEDGPLPDSGTYNTLI---RAHLRDGDKAASAELIKEMRSCRF 586
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 128/252 (50%), Gaps = 4/252 (1%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A + ++M E V+ ++ ++ + + D+ LF ++ +K GI PD+ +Y+++I
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK-GIRPDVFTYSSLI 282
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
+ G A+ LL +M ++ I +++TFN+L+ F G+ +AEK+++ M+ ++
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
PN+ +YN+ ++G + + +A ++ M SK+ PDV T+ LI GF + +
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 291 Y---NKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347
+ ++ G N + L+ + D D A + K+ S+ + ++D L K
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 348 ELRVEEAKELVE 359
++E+A + E
Sbjct: 463 NGKLEKAMVVFE 474
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 4/250 (1%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A + D+M + ++F L+ K E L + + K G +PDLV+Y +I
Sbjct: 154 AVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVI 212
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
+G D A LL +MEK I D++ ++T++ DA ++ M N +R
Sbjct: 213 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIR 272
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
P+V +Y++ + L + A L+ +M ++INP+V TF +LI F EG L EA++
Sbjct: 273 PDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKL 332
Query: 291 YN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347
++ + N + L+ C LD A + S+ CL D +++ K
Sbjct: 333 FDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCK 392
Query: 348 ELRVEEAKEL 357
+V + EL
Sbjct: 393 AKKVVDGMEL 402
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
+ A +F EM +++ F+ LL A KKFD V F + LG+ +L +YN
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVIS-FGEKMEILGVSHNLYTYN 104
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I + L A +L +M K G ++T N+LL GF R ++A + + MV M
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+P+ ++ + GL + +A+ LV M K PD+ T+ A+I G G + A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 288 KRWYNKSGCGMNKA---IFKLLVPFVCEKGDLDFAFNL 322
NK G +A I+ ++ +C+ +D A NL
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNL 262
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 8/217 (3%)
Query: 77 EEILEHQKQYKDISKEGFTAR------LIALYGKAAMFENARKVFDEMPGRNCEQTVLSF 130
+++++ + ++D+S+ G LI + +A+ +NA+ VF +M ++++
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 131 NALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEME 190
N LL + K ++ +F+ L K +EPD+ +YN + + G ++ L +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYL-QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLS 512
Query: 191 KKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTK 250
KG++ D+I +NT++ GF G +A ++ M P+ +YN + +
Sbjct: 513 LKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572
Query: 251 KALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+ EL+ EMRS D T Y L+ +++G L++
Sbjct: 573 ASAELIKEMRSCRFAGDAST-YGLVTDMLHDGRLDKG 608
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 165/379 (43%), Gaps = 40/379 (10%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
V++ + E N + F ++ + + +Y ++RL+ + + I+E +
Sbjct: 13 VLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQ 72
Query: 87 KDISKEGFTARLIALYGKAAMFENARKVFDEMPGR-NCEQTVLSFNALLGACVNSKKFDE 145
+ E +I YGK +M + A VF M CE + S+N LL A V +K++ +
Sbjct: 73 ECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVK 132
Query: 146 VDGLFK----------------------------------DLPHKLGIEPDLVSYNTIIK 171
V+ LF D K G +PD+ SY+T+I
Sbjct: 133 VESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVIN 192
Query: 172 AFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV-NMNVR 230
G LD A L EM ++G+ D+ +N L+ GF A ++W+ ++ + +V
Sbjct: 193 DLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVY 252
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
PNV+++N + GL+ + L++ M+ E D++T+ +LI G + GN+++A+
Sbjct: 253 PNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESV 312
Query: 291 YN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347
+N + ++ + ++ C G + + L R + V+ +++ L +
Sbjct: 313 FNELDERKASIDVVTYNTMLGGFCRCGKIKESLEL-WRIMEHKNSVNIVSYNILIKGLLE 371
Query: 348 ELRVEEAKELVELGKTNSY 366
+++EA + L Y
Sbjct: 372 NGKIDEATMIWRLMPAKGY 390
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 7/186 (3%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI KA F A EM + + +++ LL +K D L +L H+
Sbjct: 505 LICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKID----LALELWHQF 560
Query: 158 ---GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRF 214
G+E D++ +N +I G LD A T++ ME + +L+T+NTL+ GF+ G
Sbjct: 561 LQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620
Query: 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYAL 274
A IW M M ++P++ SYN + GL + + A+E + R+ I P V+T+ L
Sbjct: 621 NRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNIL 680
Query: 275 IKGFVN 280
++ VN
Sbjct: 681 VRAVVN 686
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 145/335 (43%), Gaps = 7/335 (2%)
Query: 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86
+I G KE + K ++ + + + N + + L+ R +I E KQ
Sbjct: 225 LIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQ- 283
Query: 87 KDISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE 145
+ K+ +T + LI A + A VF+E+ R V+++N +LG K E
Sbjct: 284 NEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKE 343
Query: 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205
L++ + HK + ++VSYN +IK ++ G +D A + M KG D T+ +
Sbjct: 344 SLELWRIMEHKNSV--NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFI 401
Query: 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEIN 265
G NG A + + + + +V +Y + +D L +K+ ++A LV EM +
Sbjct: 402 HGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVE 461
Query: 266 PDVFTFYALIKGFVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNL 322
+ ALI G + + L EA R K+GC + +L+ +C+ G A
Sbjct: 462 LNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAF 521
Query: 323 CKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
K D +++ L ++ +++ A EL
Sbjct: 522 VKEMLENGWKPDLKTYSILLCGLCRDRKIDLALEL 556
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 10/278 (3%)
Query: 91 KEGFT------ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144
KEGF + +I KA ++A ++FDEM R V +N L+ + K
Sbjct: 177 KEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHK 236
Query: 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204
L+ L + P++ ++N +I G +D + M++ DL T+++L
Sbjct: 237 TAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSL 296
Query: 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264
+ G G AE ++ + +V +YN L G + K++LEL M K
Sbjct: 297 IHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN- 355
Query: 265 NPDVFTFYALIKGFVNEGNLEEAK---RWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321
+ ++ ++ LIKG + G ++EA R G +K + + + +C G ++ A
Sbjct: 356 SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALG 415
Query: 322 LCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359
+ + S +D ++D L K+ R+EEA LV+
Sbjct: 416 VMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVK 453
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A V E+ V ++ +++ K+ +E L K++ K G+E + N +I
Sbjct: 413 ALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMS-KHGVELNSHVCNALI 471
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
+ L A+ L EM K G R ++++N L+ G G+F +A + M+ +
Sbjct: 472 GGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWK 531
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
P++++Y+ L GL +++ ALEL + + DV LI G + G L++A
Sbjct: 532 PDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDA 588
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 134/268 (50%), Gaps = 12/268 (4%)
Query: 54 RTNTGIYTGTVQRLANAKRF----RWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFE 109
R N Y+ + L N +R+ R + +++E + ++ F A LI + K
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT---FNA-LIDAFVKEGKLV 347
Query: 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI 169
A K++DEM R+ + + ++++L+ + DE +F+ + K P++V+YNT+
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK-DCFPNVVTYNTL 406
Query: 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229
I F +D L EM ++G+ + +T+ TL+ GF+ +A+ +++ MV+ V
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466
Query: 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR 289
PN+ +YN LDGL + +KA+ + ++ ++ P ++T+ +I+G G +E+
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526
Query: 290 WY---NKSGCGMNKAIFKLLVPFVCEKG 314
+ + G + I+ ++ C KG
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKG 554
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 8/236 (3%)
Query: 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIE 160
L+ KA+ A + D M R C+ ++++ ++ D L + IE
Sbjct: 202 LHNKAS---EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM-EAAKIE 257
Query: 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI 220
++V Y+T+I + D A L EME KG+R ++IT+++L+ + R++DA ++
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317
Query: 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN 280
M+ + PNV ++NA +D E + +A +L EM + I+PD+FT+ +LI GF
Sbjct: 318 LSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 377
Query: 281 EGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333
L+EAK + C N + L+ C+ +D L R S+R LV
Sbjct: 378 HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL-FREMSQRGLV 432
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 125/260 (48%), Gaps = 3/260 (1%)
Query: 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIE-EILEHQKQYKDISKEGF 94
N +R D + SD+ + N + T A K + +E E L + + I + F
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 366
Query: 95 T-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
T + LI + + A+ +F+ M ++C V+++N L+ +K+ DE LF+++
Sbjct: 367 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
+ G+ + V+Y T+I F D+A + +M G+ +++T+NTLL G NG+
Sbjct: 427 SQR-GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 485
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
A ++E + + P + +YN ++G+ + + +L + K + PDV +
Sbjct: 486 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNT 545
Query: 274 LIKGFVNEGNLEEAKRWYNK 293
+I GF +G EEA + K
Sbjct: 546 MISGFCRKGLKEEADALFRK 565
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 4/218 (1%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
++A +F M ++ FN LL A KKFD V L + + +LGI +L +YN
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKM-QRLGISHNLYTYN 124
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I F + + A LL +M K G ++T ++LL G+ R +DA + + MV M
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
RP+ ++ + GL + + +A+ LV M + P++ T+ ++ G G+++ A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 288 KRWYNKSGCG---MNKAIFKLLVPFVCEKGDLDFAFNL 322
NK N I+ ++ +C+ D A NL
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 144/330 (43%), Gaps = 41/330 (12%)
Query: 67 LANAKRFRWIEEILEHQKQYKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQ 125
+A K+F + + E + Q IS +T LI + + + A + +M E
Sbjct: 95 IAKMKKFDLVISLGE-KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEP 153
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIK------------AF 173
++++ ++LL + K+ + L + ++G PD +++ T+I A
Sbjct: 154 SIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKASEAVAL 212
Query: 174 VD-----------------------KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS 210
VD +G +D A LL +ME I +++ ++T++
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272
Query: 211 NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT 270
DA ++ M N VRPNV +Y++ + L ++ A L+ +M ++INP+V T
Sbjct: 273 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT 332
Query: 271 FYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTF 327
F ALI FV EG L EA++ Y+ K + + L+ C LD A ++ +
Sbjct: 333 FNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 392
Query: 328 SERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
S+ C + +++ K R++E EL
Sbjct: 393 SKDCFPNVVTYNTLINGFCKAKRIDEGVEL 422
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 4/223 (1%)
Query: 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197
++S K D+ GLF + + P + +N ++ A D +L +M++ GI +
Sbjct: 61 LHSMKLDDAIGLFGGMVKSRPL-PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHN 119
Query: 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257
L T+N L+ F + + A + M+ + P++ + ++ L+G K+ A+ LV
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKG 314
+M PD TF LI G EA ++ GC N + ++V +C++G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239
Query: 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
D+D AFNL + + + + V+D L K ++A L
Sbjct: 240 DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 18/269 (6%)
Query: 99 IALYGKAAM--FENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKFDEVDGLFKDLPH 155
+AL+G F A +FD+M V++FN L+ G C+ + E L +
Sbjct: 196 LALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVL-EAAALVNKMVG 254
Query: 156 KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215
K G+ D+V+Y TI+ G SA LL +ME+ I+ D++ ++ ++ +G +
Sbjct: 255 K-GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313
Query: 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
DA+ ++ M+ + PNV +YN +DG + A L+ +M +EINPDV TF ALI
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373
Query: 276 KGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPF------VCEKGDLDFAFNLCKRTFSE 329
V EG L EA++ ++ +++ IF V + C+ D A K F
Sbjct: 374 SASVKEGKLFEAEKLCDEM---LHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDL 426
Query: 330 RCLVDQAPLQLVVDRLAKELRVEEAKELV 358
D ++D + RV+E +L+
Sbjct: 427 MASPDVVTFNTIIDVYCRAKRVDEGMQLL 455
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 122/251 (48%), Gaps = 10/251 (3%)
Query: 101 LYG--KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG 158
+YG K F++A+ +FD M + V++FN ++ +K+ DE L +++ + G
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMASPD----VVTFNTIIDVYCRAKRVDEGMQLLREISRR-G 462
Query: 159 IEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAE 218
+ + +YNT+I F + +L++A L EM G+ D IT N LL GF N + +A
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL 522
Query: 219 KIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGF 278
+++E + + + +YN + G+ + +A +L + + PDV T+ +I GF
Sbjct: 523 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582
Query: 279 VNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335
+ + +A ++K +G + + + L+ + G++D + L S D
Sbjct: 583 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDA 642
Query: 336 APLQLVVDRLA 346
+++V D +
Sbjct: 643 FTIKMVADLIT 653
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 94 FTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153
F A + A + +FE A K+ DEM R +++N+++ +FD+ +F
Sbjct: 369 FNALISASVKEGKLFE-AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF--- 424
Query: 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213
L PD+V++NTII + +D LL E+ ++G+ + T+NTL+ GF
Sbjct: 425 --DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482
Query: 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA 273
A+ +++ M++ V P+ + N L G ++ ++ALEL ++ +I+ D +
Sbjct: 483 LNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542
Query: 274 LIKGFVNEGNLEEA 287
+I G ++EA
Sbjct: 543 IIHGMCKGSKVDEA 556
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 22/229 (9%)
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
V N +I FV D A +L +ME + I L++ +FN L+ F + + + +
Sbjct: 107 VDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGK 166
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG---------------EMRSKEINPDV 268
+ + +P+V ++N L GL +E + +AL L G +M + P V
Sbjct: 167 LTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVV 226
Query: 269 FTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325
TF LI G EG + EA NK G ++ + +V +C+ GD A NL +
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286
Query: 326 TFSERCLVDQAPLQLVVDRLAKELRVEEAK----ELVELGKTNSYCRYN 370
D ++DRL K+ +A+ E++E G + YN
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 335
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
++A FD M T + N ++G V + D L++ + + I ++ S+N
Sbjct: 87 LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIR-RIPLNIYSFN 145
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR-------------- 213
+IK F D L + + ++ K G + D++TFNTLL G R
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205
Query: 214 -FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272
F +A +++ MV + + P V ++N ++GL +E + +A LV +M K ++ DV T+
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265
Query: 273 ALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKG---DLDFAFN----- 321
++ G G+ + A +K + + I+ ++ +C+ G D + F+
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325
Query: 322 -LCKRTFSERCLVD 334
+ F+ C++D
Sbjct: 326 GIAPNVFTYNCMID 339
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 8/234 (3%)
Query: 93 GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKD 152
GF LI+ + K A ++F EMP + C+ V +FN+L+ + L +D
Sbjct: 461 GFNC-LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD 519
Query: 153 LPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212
+ + G+ + V+YNT+I AF+ +G + A L+ EM +G LD IT+N+L+ G G
Sbjct: 520 MISE-GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAG 578
Query: 213 RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272
A ++E M+ P+ S N ++GL ++A+E EM + PD+ TF
Sbjct: 579 EVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFN 638
Query: 273 ALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLC 323
+LI G G +E+ + K G + F L+ ++C+ G F ++ C
Sbjct: 639 SLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGG---FVYDAC 689
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 135/309 (43%), Gaps = 46/309 (14%)
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
K + A+ +F +P + ++ FN L+ V + D+ + D+ GI PD+
Sbjct: 334 KIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV 389
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
+YN++I + +G + A +L++M KG + ++ ++ L+ GF G+ +A +
Sbjct: 390 CTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNE 449
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG------ 277
M ++PN +N + E + +A+E+ EM K PDV+TF +LI G
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE 509
Query: 278 -----------------------------FVNEGNLEEAKRWYNK---SGCGMNKAIFKL 305
F+ G ++EA++ N+ G +++ +
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA----KELVELG 361
L+ +C G++D A +L ++ + ++++ L + VEEA KE+V G
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Query: 362 KTNSYCRYN 370
T +N
Sbjct: 630 STPDIVTFN 638
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 4/260 (1%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI Y K + A +V +M + C+ V S+ L+ K DE + ++
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD- 453
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G++P+ V +N +I AF + + A + EM +KG + D+ TFN+L+ G A
Sbjct: 454 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 513
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
+ M++ V N +YN ++ + K+A +LV EM + D T+ +LIKG
Sbjct: 514 LWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573
Query: 278 FVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334
G +++A+ + K G + +L+ +C G ++ A K D
Sbjct: 574 LCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD 633
Query: 335 QAPLQLVVDRLAKELRVEEA 354
+++ L + R+E+
Sbjct: 634 IVTFNSLINGLCRAGRIEDG 653
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 114/259 (44%), Gaps = 6/259 (2%)
Query: 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95
N+ ++ F + +R + +Y + +L F+ I+ +L K + KE
Sbjct: 90 NVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLF 149
Query: 96 ARLIALYGKAAMFENARKVFDEMPGRN---CEQTVLSFNALLGACVNSKKFDEVDGLFKD 152
++ Y KA ++ EM RN CE T S+N +L V+ +F D
Sbjct: 150 ISIMRDYDKAGFPGQTTRLMLEM--RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYD 207
Query: 153 LPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212
+ + I P L ++ ++KAF +DSA +LL +M K G + + + TL+
Sbjct: 208 MLSR-KIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCN 266
Query: 213 RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272
R +A ++ E M M P+ ++N + GL + +A ++V M + PD T+
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326
Query: 273 ALIKGFVNEGNLEEAKRWY 291
L+ G G ++ AK +
Sbjct: 327 YLMNGLCKIGRVDAAKDLF 345
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 8/215 (3%)
Query: 41 VDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA---- 96
VD+ K + L R + G+ TV F EI E +K ++ +G
Sbjct: 507 VDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEIT 566
Query: 97 --RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLP 154
LI +A + AR +F++M + +S N L+ S +E K++
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMV 626
Query: 155 HKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRF 214
+ G PD+V++N++I G ++ T+ +++ +GI D +TFNTL+ G
Sbjct: 627 LR-GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFV 685
Query: 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249
DA + + + PN R+++ L + I ++T
Sbjct: 686 YDACLLLDEGIEDGFVPNHRTWSILLQSI-IPQET 719
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 4/219 (1%)
Query: 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI 169
+A +FD+M G + V+ +N ++ SK+ D L + K GI PD+V+YN++
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM-EKDGIGPDVVTYNSL 227
Query: 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229
I G A ++ M K+ I D+ TFN L+ GR ++AE+ +E M+ ++
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287
Query: 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR 289
P++ +Y+ + GL + + +A E+ G M SK PDV T+ LI G+ +E +
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347
Query: 290 WY---NKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325
+ ++ G N + +L+ C G L+ A + +R
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 124 EQTVLSFNALL-GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSA 182
E ++++F +LL G C + +D + D +G +P++V YNTII +D+A
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDAL--YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNA 205
Query: 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242
LL MEK GI D++T+N+L+ G S+GR++DA ++ M + P+V ++NA +D
Sbjct: 206 LDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265
Query: 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMN 299
E + +A E EM + ++PD+ T+ LI G L+EA+ + GC +
Sbjct: 266 CVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325
Query: 300 KAIFKLLVPFVCEKGDLDFAFNL 322
+ +L+ C+ ++ L
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKL 348
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 117/270 (43%), Gaps = 39/270 (14%)
Query: 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTL 185
++ F+ LL A KK+D V L++ + LGI +L + N ++ F L A +
Sbjct: 80 SIADFSRLLSAISKMKKYDVVIYLWEQM-QMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 186 LYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245
L +M K G ++TF +LL GF R DA +++ MV M +PNV YN +DGL
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198
Query: 246 EKQTKKALEL-----------------------------------VGEMRSKEINPDVFT 270
KQ AL+L V M +EI PDVFT
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258
Query: 271 FYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTF 327
F ALI V EG + EA+ +Y + + + LL+ +C LD A +
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318
Query: 328 SERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
S+ C D ++++ K +VE +L
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKL 348
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 132/273 (48%), Gaps = 6/273 (2%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85
++I G+ K + +D + G + Y + L ++ R+ ++ +
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEKDG-IGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK 249
Query: 86 YKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVNSKKF 143
++I + FT LI K A + ++EM R+ + +++++ L+ G C+ S+
Sbjct: 250 -REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR-L 307
Query: 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT 203
DE + +F + K G PD+V+Y+ +I + ++ L EM ++G+ + +T+
Sbjct: 308 DEAEEMFGFMVSK-GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263
L+ G+ G+ AE+I+ MV V PN+ +YN L GL + +KAL ++ +M+
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNG 426
Query: 264 INPDVFTFYALIKGFVNEGNLEEAKRWYNKSGC 296
++ D+ T+ +I+G G + +A Y C
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNC 459
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 1/170 (0%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI Y K+ E+ K+F EM R + +++ L+ + K + + +F+ +
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVF-C 390
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G+ P++++YN ++ D G ++ A +L +M+K G+ D++T+N ++ G G ADA
Sbjct: 391 GVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADA 450
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267
I+ ++ + P++ +Y + GL + ++A L +M+ I P+
Sbjct: 451 WDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 1/186 (0%)
Query: 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN 167
+ A ++F M + C V++++ L+ SKK + LF ++ + G+ + V+Y
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR-GVVRNTVTYT 365
Query: 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227
+I+ + G L+ A + M G+ ++IT+N LL G NG+ A I M
Sbjct: 366 ILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN 425
Query: 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287
+ ++ +YN + G+ + A ++ + + + PD++T+ ++ G +G EA
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 288 KRWYNK 293
+ K
Sbjct: 486 DALFRK 491
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 73/184 (39%), Gaps = 3/184 (1%)
Query: 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNA 238
LD + L + M + + F+ LL ++ +WE M + + N+ + N
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SG 295
L+ Q AL +G+M P + TF +L+ GF + +A +++ G
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 296 CGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAK 355
N I+ ++ +C+ +D A +L R + D ++ L R +A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 356 ELVE 359
+V
Sbjct: 242 RMVS 245
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 4/230 (1%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
+I L + A + F EM + + + L+ F ++ H
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEM-HSR 380
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
I PD+++Y II F G + A L +EM KG+ D +TF L+ G+ G DA
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440
Query: 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277
++ M+ PNV +Y +DGL E A EL+ EM + P++FT+ +++ G
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500
Query: 278 FVNEGNLEEAKRW---YNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCK 324
GN+EEA + + +G + + L+ C+ G++D A + K
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 16/281 (5%)
Query: 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT-ARLIALYGKAAMFENARKV 114
+T +YT + R + ++ +DI+ + T +I+ + + A K+
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFF-YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 115 FDEMPGRNCEQTVLSFNALL-GACVNSKKFDEVDGLFKDLPHKL--GIEPDLVSYNTIIK 171
F EM + E ++F L+ G C K + F+ H + G P++V+Y T+I
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYC----KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID 464
Query: 172 AFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRP 231
+G LDSAN LL+EM K G++ ++ T+N+++ G +G +A K+ +
Sbjct: 465 GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA 524
Query: 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKR-- 289
+ +Y +D + KA E++ EM K + P + TF L+ GF G LE+ ++
Sbjct: 525 DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Query: 290 -WYNKSGCGMNKAIFKLLVPFVCEKGDLDFAF----NLCKR 325
W G N F LV C + +L A ++C R
Sbjct: 585 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 10/238 (4%)
Query: 127 VLSFNALL-GACVNSKKFDEVDGLFK--DLPHKLGIEPDLVSYNTIIKAFVDKGSLDSAN 183
V+S++ ++ G C +F E+D ++K ++ + G++P+ Y +II L A
Sbjct: 281 VISYSTVVNGYC----RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 184 TLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGL 243
EM ++GI D + + TL+ GF G A K + M + ++ P+V +Y A + G
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396
Query: 244 AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNK 300
+A +L EM K + PD TF LI G+ G++++A R +N ++GC N
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456
Query: 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358
+ L+ +C++GDLD A L + + +V+ L K +EEA +LV
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 3/188 (1%)
Query: 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL 163
K ++A ++ EM + + ++N+++ S +E L + G+ D
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGLNADT 526
Query: 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223
V+Y T++ A+ G +D A +L EM KG++ ++TFN L+ GF +G D EK+
Sbjct: 527 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 586
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
M+ + PN ++N+ + I K A + +M S+ + PD T+ L+KG N
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 646
Query: 284 LEEAKRWY 291
++EA W+
Sbjct: 647 MKEA--WF 652
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 11/256 (4%)
Query: 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACV-NSKKFDEVDGLFKDLPHKLGIEPDLV 164
+ AR+VF++M +V S N L + K +F++ P ++G+ ++
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFP-EVGVCWNVA 247
Query: 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIW--- 221
SYN +I G + A+ LL ME KG D+I+++T++ G+ RF + +K+W
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY---CRFGELDKVWKLI 304
Query: 222 ETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE 281
E M ++PN Y + + L + +A E EM + I PD + LI GF
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 282 GNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPL 338
G++ A +++ + + + ++ C+ GD+ A L F + D
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 339 QLVVDRLAKELRVEEA 354
+++ K +++A
Sbjct: 425 TELINGYCKAGHMKDA 440
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 41/298 (13%)
Query: 103 GKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD 162
GKA E A ++ M G CE ++++N L+ S + ++ +FKD+ PD
Sbjct: 220 GKA---EKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276
Query: 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKI-- 220
+V+Y ++I + G + A++LL +M + GI +TFN L+ G+ G AE+I
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336
Query: 221 ---------------------------------WETMVNMNVRPNVRSYNARLDGLAIEK 247
WE M + PN +Y+ ++ L E
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNEN 396
Query: 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAK---RWYNKSGCGMNKAIFK 304
+ KA EL+G++ SK+I P F + +I GF G + EA K C +K F
Sbjct: 397 RLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFT 456
Query: 305 LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362
+L+ C KG + A ++ + + C D+ + ++ L K +EA L ++ +
Sbjct: 457 ILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIAR 514
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 13/259 (5%)
Query: 109 ENARKVFDE-MPGRNCEQTVLSFNALL-GACVNSK--KFDEVDGLFKDLPHKLGIEPDLV 164
E+A K+FDE + ++C T +FN L+ G C K K E+ G+ G EPD+V
Sbjct: 188 EDAMKLFDEHLRFQSCNDTK-TFNILIRGLCGVGKAEKALELLGVMSGF----GCEPDIV 242
Query: 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGI-RLDLITFNTLLLGFYSNGRFADAEKIWET 223
+YNT+I+ F L+ A+ + +++ + D++T+ +++ G+ G+ +A + +
Sbjct: 243 TYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDD 302
Query: 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283
M+ + + P ++N +DG A + A E+ G+M S PDV TF +LI G+ G
Sbjct: 303 MLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQ 362
Query: 284 LEEAKR-WYNKSGCGM--NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340
+ + R W + GM N + +L+ +C + L A L + S+ +
Sbjct: 363 VSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP 422
Query: 341 VVDRLAKELRVEEAKELVE 359
V+D K +V EA +VE
Sbjct: 423 VIDGFCKAGKVNEANVIVE 441
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 11/270 (4%)
Query: 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT-ARLIALYGKAAMFENARKVFDEM 118
Y +Q + E+ + K S + T +I+ Y KA A + D+M
Sbjct: 244 YNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDM 303
Query: 119 PGRNCEQTVLSFNALLGACVNSKKF---DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175
T ++FN L+ + + +E+ G G PD+V++ ++I +
Sbjct: 304 LRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF----GCFPDVVTFTSLIDGYCR 359
Query: 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS 235
G + L EM +G+ + T++ L+ + R A ++ + + ++ P
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419
Query: 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKS- 294
YN +DG + +A +V EM K+ PD TF LI G +G + EA ++K
Sbjct: 420 YNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479
Query: 295 --GCGMNKAIFKLLVPFVCEKGDLDFAFNL 322
GC +K L+ + + G A++L
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 8/205 (3%)
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYE-MEKKGIRLDLITFNTLLLGFYSNGRFAD 216
G+ P+ ++ +F +KG L A LL + E +G + N+LL R D
Sbjct: 133 GVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGC---CMVVNSLLNTLVKLDRVED 189
Query: 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276
A K+++ + + +++N + GL + +KALEL+G M PD+ T+ LI+
Sbjct: 190 AMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQ 249
Query: 277 GFVNEGNLEEAKRWYN--KSG--CGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332
GF L +A + KSG C + + ++ C+ G + A +L
Sbjct: 250 GFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIY 309
Query: 333 VDQAPLQLVVDRLAKELRVEEAKEL 357
++VD AK + A+E+
Sbjct: 310 PTNVTFNVLVDGYAKAGEMLTAEEI 334
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 15/271 (5%)
Query: 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157
LI YG A +F+ + K+F M +VL+FN+LL + + LF ++
Sbjct: 144 LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTY 203
Query: 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217
G+ PD ++NT+I F +D A + +ME D++T+NT++ G G+ A
Sbjct: 204 GVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIA 263
Query: 218 EKIWETMVN--MNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
+ M+ +V PNV SY + G ++++ +A+ + +M S+ + P+ T+ LI
Sbjct: 264 HNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLI 323
Query: 276 KGFVNEGNLEEAKRWYNKSGCGMNKAI---------FKLLVPFVCEKGDLDFAFNLCKRT 326
KG +E K G N A F +L+ C+ G LD A + +
Sbjct: 324 KGLSEAHRYDEIKDIL----IGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEM 379
Query: 327 FSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
+ + D A +++ L + A+ L
Sbjct: 380 LNMKLHPDSASYSVLIRTLCMRNEFDRAETL 410
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/375 (18%), Positives = 151/375 (40%), Gaps = 51/375 (13%)
Query: 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILE 81
++ S+IR + V F+ +G + + + L R ++ +
Sbjct: 139 RYFNSLIRSYGNAGLFQESVKLFQTMKQMG-ISPSVLTFNSLLSILLKRGRTGMAHDLFD 197
Query: 82 HQKQYKDISKEGFT-ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALL-GACVN 139
++ ++ + +T LI + K +M + A ++F +M +C V+++N ++ G C
Sbjct: 198 EMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRA 257
Query: 140 SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199
K + L L + P++VSY T+++ + K +D A + ++M +G++ + +
Sbjct: 258 GKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAV 317
Query: 200 TFNTLLLGFYSNGRFAD-------------------------------------AEKIWE 222
T+NTL+ G R+ + A K+++
Sbjct: 318 TYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQ 377
Query: 223 TMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI-------NPDVFTFYALI 275
M+NM + P+ SY+ + L + + +A L E+ KE+ P + +
Sbjct: 378 EMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMF 437
Query: 276 KGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332
+ G ++A++ + K G + +K L+ C +G A+ L +
Sbjct: 438 EYLCANGKTKQAEKVFRQLMKRGV-QDPPSYKTLITGHCREGKFKPAYELLVLMLRREFV 496
Query: 333 VDQAPLQLVVDRLAK 347
D +L++D L K
Sbjct: 497 PDLETYELLIDGLLK 511
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 178 SLDSANTLLYEMEKKG---IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVR 234
+L+ A L+ +E++ ++L FN+L+ + + G F ++ K+++TM M + P+V
Sbjct: 115 NLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVL 174
Query: 235 SYNARLDGLAIEKQTKKALELVGEM-RSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNK 293
++N+ L L +T A +L EM R+ + PD +TF LI GF ++EA R +
Sbjct: 175 TFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKD 234
Query: 294 S---GCGMNKAIFKLLVPFVCEKGDLDFAFNL 322
C + + ++ +C G + A N+
Sbjct: 235 MELYHCNPDVVTYNTIIDGLCRAGKVKIAHNV 266
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 21/292 (7%)
Query: 16 ATATGPKFIG--SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF 73
AT P + +++RG + + V F G + N Y ++ L+ A R+
Sbjct: 274 ATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRG-LKPNAVTYNTLIKGLSEAHRY 332
Query: 74 RWIEEIL-EHQKQYKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN 131
I++IL + + + T LI + A + A KVF EM S++
Sbjct: 333 DEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYS 392
Query: 132 ALLGACVNSKKFDEVDGLFKDLPHK---LG---IEPDLVSYNTIIKAFVDKGSLDSANTL 185
L+ +FD + LF +L K LG +P +YN + + G A +
Sbjct: 393 VLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKV 452
Query: 186 LYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245
++ K+G++ D ++ TL+ G G+F A ++ M+ P++ +Y +DGL
Sbjct: 453 FRQLMKRGVQ-DPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLK 511
Query: 246 EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY-NKSGC 296
+ A + + M P TF++++ E AKR + N+S C
Sbjct: 512 IGEALLAHDTLQRMLRSSYLPVATTFHSVLA--------ELAKRKFANESFC 555
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 147/299 (49%), Gaps = 16/299 (5%)
Query: 25 GSVIRGIYK--ENNLK-RLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILE 81
G+VI G+ K E +L L++K +K G+ + IY + L +++ +++ +
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEK----GKIEADVVIYNTIIDGLC---KYKHMDDAFD 271
Query: 82 --HQKQYKDISKEGFTAR-LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV 138
++ + K I + FT LI+ + +A ++ +M +N ++ FNAL+ A V
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331
Query: 139 NSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL 198
K E + L+ ++ PD+V+YNT+IK F ++ + EM ++G+ +
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391
Query: 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258
+T+ TL+ GF+ +A+ +++ MV+ V P++ +YN LDGL + AL +
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEY 451
Query: 259 MRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY---NKSGCGMNKAIFKLLVPFVCEKG 314
M+ +++ D+ T+ +I+ G +E+ + + G N + ++ C KG
Sbjct: 452 MQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG 510
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 1/183 (0%)
Query: 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170
A + D+M + ++F L+ K E L + + K G +PDLV+Y +I
Sbjct: 164 AVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVI 222
Query: 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230
+G D A LL +MEK I D++ +NT++ G DA ++ M ++
Sbjct: 223 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 282
Query: 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290
P+V +YN + L + A L+ +M K INPD+ F ALI FV EG L EA++
Sbjct: 283 PDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342
Query: 291 YNK 293
Y++
Sbjct: 343 YDE 345
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 130/272 (47%), Gaps = 13/272 (4%)
Query: 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF----RWIEEILE 81
++I G+ K ++ D F K G + + Y + L N R+ R + ++LE
Sbjct: 255 TIIDGLCKYKHMDDAFDLFNKMETKG-IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Query: 82 HQKQYKDISKE-GFTARLIALYGKAAMFENARKVFDEM-PGRNCEQTVLSFNALLGACVN 139
K+I+ + F LI + K A K++DEM ++C V+++N L+
Sbjct: 314 -----KNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368
Query: 140 SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199
K+ +E +F+++ + G+ + V+Y T+I F D+A + +M G+ D++
Sbjct: 369 YKRVEEGMEVFREMSQR-GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 200 TFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259
T+N LL G +NG A ++E M +++ ++ +Y ++ L + + +L +
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL 487
Query: 260 RSKEINPDVFTFYALIKGFVNEGNLEEAKRWY 291
K + P+V T+ ++ GF +G EEA +
Sbjct: 488 SLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 3/215 (1%)
Query: 156 KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215
KLG P +V+ N+++ F + A L+ +M + G + D +TF TL+ G + + + +
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197
Query: 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI 275
+A + E MV +P++ +Y A ++GL + AL L+ +M +I DV + +I
Sbjct: 198 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTII 257
Query: 276 KGFVNEGNLEEAKRWYNKSGC-GMNKAIFKL--LVPFVCEKGDLDFAFNLCKRTFSERCL 332
G ++++A +NK G+ +F L+ +C G A L +
Sbjct: 258 DGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNIN 317
Query: 333 VDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367
D ++D KE ++ EA++L + + +C
Sbjct: 318 PDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHC 352
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Query: 142 KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201
K D+ GLF D+ P +V ++ ++ A D +L +M+ GI +L T+
Sbjct: 55 KLDDAIGLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTY 113
Query: 202 NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261
+ + F + + A I M+ + P++ + N+ L+G + +A+ LV +M
Sbjct: 114 SIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 173
Query: 262 KEINPDVFTFYALIKGFVNEGNLEEAKRWYNK---SGCGMNKAIFKLLVPFVCEKGDLDF 318
PD TF L+ G EA + GC + + ++ +C++G+ D
Sbjct: 174 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 233
Query: 319 AFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357
A NL + + D ++D L K +++A +L
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,367,482
Number of Sequences: 539616
Number of extensions: 5705167
Number of successful extensions: 21632
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 15957
Number of HSP's gapped (non-prelim): 2497
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)