Query 042154
Match_columns 377
No_of_seqs 581 out of 1780
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 03:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.7E-59 8E-64 438.0 42.8 351 19-370 435-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-57 4.7E-62 426.1 41.8 349 17-371 402-755 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.1E-52 8.8E-57 387.4 36.1 336 19-366 187-559 (697)
4 PLN03081 pentatricopeptide (PP 100.0 9.3E-52 2E-56 385.0 35.0 341 18-368 84-460 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.9E-51 6.3E-56 390.3 35.7 338 18-368 250-623 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 5.2E-51 1.1E-55 388.5 34.5 299 18-326 149-450 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-24 2.3E-29 211.8 40.5 332 19-362 565-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-24 5.4E-29 209.3 40.2 340 17-366 461-801 (899)
9 PRK11788 tetratricopeptide rep 99.9 5E-24 1.1E-28 187.1 33.1 302 28-336 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.5E-27 178.4 32.3 301 62-368 40-351 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.6E-21 1E-25 176.6 37.9 337 20-367 41-384 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-20 1E-24 170.3 39.6 338 19-365 158-572 (615)
13 PRK15174 Vi polysaccharide exp 99.9 4.1E-19 8.8E-24 163.8 37.1 306 18-332 73-384 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 2.4E-20 5.2E-25 158.9 24.3 336 20-367 115-488 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 4.3E-20 9.2E-25 157.4 25.1 301 33-346 196-501 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 3E-18 6.6E-23 158.4 39.3 336 24-366 130-539 (615)
17 PRK11447 cellulose synthase su 99.9 4.5E-18 9.8E-23 167.2 39.7 328 28-364 276-700 (1157)
18 PRK11447 cellulose synthase su 99.9 5.6E-18 1.2E-22 166.6 39.6 339 18-363 300-739 (1157)
19 PRK10049 pgaA outer membrane p 99.9 1.3E-17 2.7E-22 157.1 39.5 343 18-367 46-459 (765)
20 PRK10049 pgaA outer membrane p 99.8 8.4E-17 1.8E-21 151.6 36.8 343 16-368 10-426 (765)
21 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.8E-20 141.5 39.0 155 29-192 42-198 (822)
22 KOG4422 Uncharacterized conser 99.8 3.3E-16 7.2E-21 128.3 30.5 350 16-370 202-596 (625)
23 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3E-19 134.7 38.4 189 173-362 302-511 (822)
24 PRK09782 bacteriophage N4 rece 99.8 2.2E-14 4.8E-19 136.0 38.4 321 34-367 355-709 (987)
25 PF13429 TPR_15: Tetratricopep 99.8 5.8E-18 1.2E-22 141.2 11.4 259 97-363 13-276 (280)
26 KOG2076 RNA polymerase III tra 99.8 1.8E-14 3.9E-19 128.5 32.7 341 17-365 135-513 (895)
27 PRK10747 putative protoheme IX 99.7 1.4E-14 3E-19 126.4 31.7 282 70-363 97-389 (398)
28 PRK10747 putative protoheme IX 99.7 1.9E-14 4.1E-19 125.5 32.1 296 24-329 85-390 (398)
29 TIGR00540 hemY_coli hemY prote 99.7 1.6E-14 3.5E-19 126.6 31.9 289 68-363 95-398 (409)
30 PF13429 TPR_15: Tetratricopep 99.7 1.4E-17 3E-22 139.0 11.7 256 64-326 15-274 (280)
31 TIGR00540 hemY_coli hemY prote 99.7 1.2E-14 2.5E-19 127.6 30.4 298 23-329 84-399 (409)
32 PRK09782 bacteriophage N4 rece 99.7 1.6E-13 3.4E-18 130.4 36.3 340 18-368 373-744 (987)
33 KOG4422 Uncharacterized conser 99.7 8.8E-14 1.9E-18 114.4 28.3 323 21-366 116-464 (625)
34 COG3071 HemY Uncharacterized e 99.7 3.4E-13 7.5E-18 110.0 30.4 284 69-362 96-388 (400)
35 COG2956 Predicted N-acetylgluc 99.7 1.4E-13 2.9E-18 109.2 26.6 292 34-332 48-350 (389)
36 COG3071 HemY Uncharacterized e 99.7 4.7E-13 1E-17 109.2 30.5 300 25-334 86-395 (400)
37 KOG2076 RNA polymerase III tra 99.7 1E-12 2.3E-17 117.5 32.6 342 18-363 170-554 (895)
38 KOG1126 DNA-binding cell divis 99.7 8.7E-14 1.9E-18 120.4 23.9 283 37-332 335-623 (638)
39 KOG1155 Anaphase-promoting com 99.6 1.4E-12 2.9E-17 108.4 27.5 316 31-363 174-494 (559)
40 KOG0547 Translocase of outer m 99.6 1.1E-12 2.5E-17 109.6 26.9 328 23-362 117-564 (606)
41 KOG1126 DNA-binding cell divis 99.6 1.7E-13 3.8E-18 118.6 21.8 289 71-370 333-626 (638)
42 KOG2003 TPR repeat-containing 99.6 6.1E-13 1.3E-17 110.4 24.1 337 22-366 277-691 (840)
43 KOG2002 TPR-containing nuclear 99.6 1.1E-12 2.3E-17 118.3 26.7 341 18-367 411-801 (1018)
44 COG2956 Predicted N-acetylgluc 99.6 5.3E-12 1.1E-16 100.3 26.7 286 69-363 47-346 (389)
45 KOG0495 HAT repeat protein [RN 99.6 4E-11 8.7E-16 104.0 33.5 333 22-365 517-881 (913)
46 KOG1129 TPR repeat-containing 99.6 4.7E-13 1E-17 106.4 19.2 240 126-372 222-466 (478)
47 KOG2002 TPR-containing nuclear 99.6 3.1E-11 6.7E-16 109.1 32.6 342 17-365 160-526 (1018)
48 KOG2003 TPR repeat-containing 99.6 2.6E-12 5.7E-17 106.7 23.4 278 66-350 428-709 (840)
49 KOG1155 Anaphase-promoting com 99.6 1E-11 2.3E-16 103.3 26.8 289 63-361 233-533 (559)
50 TIGR02521 type_IV_pilW type IV 99.6 1.2E-11 2.7E-16 100.5 26.0 199 163-364 31-232 (234)
51 KOG1915 Cell cycle control pro 99.5 1.2E-10 2.5E-15 97.6 30.8 323 32-365 84-501 (677)
52 KOG0495 HAT repeat protein [RN 99.5 5.2E-10 1.1E-14 97.3 35.3 326 29-365 414-783 (913)
53 PRK12370 invasion protein regu 99.5 1.2E-11 2.6E-16 112.7 26.2 263 55-330 254-536 (553)
54 TIGR02521 type_IV_pilW type IV 99.5 1.1E-11 2.4E-16 100.8 23.3 199 58-260 32-230 (234)
55 PRK12370 invasion protein regu 99.5 1.9E-11 4.1E-16 111.5 27.1 253 106-369 275-540 (553)
56 KOG1129 TPR repeat-containing 99.5 4.6E-12 9.9E-17 100.9 18.5 231 94-330 225-459 (478)
57 PF12569 NARP1: NMDA receptor- 99.5 1.7E-10 3.8E-15 102.0 28.8 289 64-363 11-333 (517)
58 KOG4318 Bicoid mRNA stability 99.4 2.1E-11 4.5E-16 109.1 19.6 247 15-283 19-286 (1088)
59 KOG1173 Anaphase-promoting com 99.4 4E-10 8.6E-15 96.4 25.9 281 20-308 243-530 (611)
60 KOG1915 Cell cycle control pro 99.4 3.8E-09 8.2E-14 88.7 31.1 98 18-118 171-270 (677)
61 PF13041 PPR_2: PPR repeat fam 99.4 7.1E-13 1.5E-17 78.3 6.5 49 231-279 1-49 (50)
62 KOG1173 Anaphase-promoting com 99.4 4.8E-10 1E-14 95.9 25.8 265 95-366 247-520 (611)
63 PF13041 PPR_2: PPR repeat fam 99.4 8.5E-13 1.8E-17 78.0 6.4 49 196-244 1-49 (50)
64 PF12569 NARP1: NMDA receptor- 99.4 5.7E-09 1.2E-13 92.6 31.1 294 24-329 7-334 (517)
65 KOG1174 Anaphase-promoting com 99.4 3.3E-09 7.1E-14 87.6 27.1 288 71-367 210-503 (564)
66 KOG1840 Kinesin light chain [C 99.4 1.6E-09 3.4E-14 95.0 26.6 241 122-362 194-477 (508)
67 KOG1156 N-terminal acetyltrans 99.4 1.4E-08 3E-13 88.5 31.4 94 272-366 375-470 (700)
68 KOG1174 Anaphase-promoting com 99.4 3.6E-09 7.7E-14 87.4 26.2 308 16-332 189-503 (564)
69 PRK11189 lipoprotein NlpI; Pro 99.4 7.6E-10 1.6E-14 92.7 23.1 228 102-339 36-274 (296)
70 KOG0547 Translocase of outer m 99.3 6.1E-09 1.3E-13 87.8 26.3 84 60-147 118-203 (606)
71 KOG1840 Kinesin light chain [C 99.3 2E-09 4.4E-14 94.3 24.7 195 133-327 247-477 (508)
72 PRK11189 lipoprotein NlpI; Pro 99.3 7.3E-09 1.6E-13 86.8 27.1 212 70-292 39-260 (296)
73 cd05804 StaR_like StaR_like; a 99.3 6E-08 1.3E-12 84.3 31.9 196 167-363 118-335 (355)
74 KOG4162 Predicted calmodulin-b 99.2 1.5E-07 3.3E-12 83.9 32.0 349 19-373 321-792 (799)
75 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.7E-13 77.8 21.7 197 23-226 37-235 (250)
76 COG3063 PilF Tfp pilus assembl 99.2 1.4E-08 3E-13 77.5 21.8 195 129-328 37-235 (250)
77 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.9E-12 81.3 31.7 306 20-329 5-336 (355)
78 PF04733 Coatomer_E: Coatomer 99.2 2.8E-09 6E-14 88.1 16.9 250 64-329 8-265 (290)
79 KOG4340 Uncharacterized conser 99.2 2.3E-08 5E-13 79.2 20.8 325 23-361 12-372 (459)
80 KOG4340 Uncharacterized conser 99.2 9.6E-08 2.1E-12 75.8 24.1 262 20-292 43-334 (459)
81 KOG2047 mRNA splicing factor [ 99.2 6.9E-07 1.5E-11 78.3 31.0 93 23-119 104-196 (835)
82 PF04733 Coatomer_E: Coatomer 99.2 7E-09 1.5E-13 85.7 18.4 247 28-292 8-260 (290)
83 KOG2376 Signal recognition par 99.1 7.3E-07 1.6E-11 77.3 30.0 193 26-228 17-254 (652)
84 KOG3785 Uncharacterized conser 99.1 4.1E-08 9E-13 79.7 21.2 53 29-83 65-117 (557)
85 KOG4318 Bicoid mRNA stability 99.1 3.9E-09 8.4E-14 95.0 16.8 250 42-315 11-286 (1088)
86 KOG0624 dsRNA-activated protei 99.1 3.4E-07 7.4E-12 74.2 25.5 301 19-329 36-370 (504)
87 KOG2047 mRNA splicing factor [ 99.1 3E-06 6.5E-11 74.5 32.2 72 7-83 124-195 (835)
88 KOG0548 Molecular co-chaperone 99.1 2.4E-07 5.3E-12 79.3 24.9 331 28-366 9-457 (539)
89 PRK04841 transcriptional regul 99.1 1.8E-06 3.9E-11 84.7 34.0 304 62-365 414-761 (903)
90 KOG1125 TPR repeat-containing 99.0 3.5E-08 7.6E-13 85.1 16.9 255 31-321 295-563 (579)
91 KOG1070 rRNA processing protei 99.0 4.2E-07 9.2E-12 86.1 24.1 228 124-356 1455-1692(1710)
92 KOG1156 N-terminal acetyltrans 99.0 6E-06 1.3E-10 72.7 29.2 344 18-371 38-441 (700)
93 KOG1914 mRNA cleavage and poly 98.9 2.1E-05 4.5E-10 68.0 30.7 149 214-364 347-501 (656)
94 KOG1070 rRNA processing protei 98.9 6.3E-07 1.4E-11 85.0 22.8 207 56-267 1457-1668(1710)
95 KOG1125 TPR repeat-containing 98.9 3.7E-07 8E-12 78.9 19.7 251 98-356 291-563 (579)
96 PRK04841 transcriptional regul 98.9 8.9E-06 1.9E-10 79.9 31.9 338 23-364 343-720 (903)
97 PLN02789 farnesyltranstransfer 98.9 4.1E-06 9E-11 70.4 25.2 201 140-347 50-267 (320)
98 KOG4162 Predicted calmodulin-b 98.9 1.3E-05 2.8E-10 72.0 28.3 206 53-260 319-540 (799)
99 TIGR03302 OM_YfiO outer membra 98.9 3.2E-07 6.8E-12 74.7 17.5 185 20-227 32-232 (235)
100 KOG1128 Uncharacterized conser 98.9 9.5E-07 2.1E-11 78.6 20.9 221 123-364 394-616 (777)
101 PF12854 PPR_1: PPR repeat 98.9 4.8E-09 1E-13 55.6 4.2 32 228-259 2-33 (34)
102 KOG2376 Signal recognition par 98.9 5E-05 1.1E-09 66.4 31.8 170 18-194 43-255 (652)
103 TIGR03302 OM_YfiO outer membra 98.8 8.4E-07 1.8E-11 72.2 18.3 188 161-365 31-233 (235)
104 KOG3616 Selective LIM binding 98.8 1.8E-06 3.9E-11 77.0 21.1 288 26-357 620-930 (1636)
105 PF12854 PPR_1: PPR repeat 98.8 8.8E-09 1.9E-13 54.6 4.3 32 330-361 2-33 (34)
106 KOG0985 Vesicle coat protein c 98.8 3.4E-05 7.4E-10 71.5 29.3 298 19-362 982-1306(1666)
107 KOG3617 WD40 and TPR repeat-co 98.8 1.2E-05 2.6E-10 72.9 25.7 314 20-362 725-1107(1416)
108 KOG1128 Uncharacterized conser 98.8 5.3E-07 1.1E-11 80.1 17.1 224 16-262 393-616 (777)
109 KOG3081 Vesicle coat complex C 98.8 5.6E-06 1.2E-10 65.0 20.6 117 135-262 116-236 (299)
110 PLN02789 farnesyltranstransfer 98.8 6.4E-06 1.4E-10 69.3 22.5 215 23-245 39-267 (320)
111 PRK14720 transcript cleavage f 98.8 5.9E-06 1.3E-10 77.5 24.2 148 56-226 30-177 (906)
112 PRK14720 transcript cleavage f 98.8 8.3E-06 1.8E-10 76.6 24.8 173 17-228 27-199 (906)
113 COG5010 TadD Flp pilus assembl 98.8 2.9E-06 6.3E-11 66.5 18.1 157 98-259 72-228 (257)
114 KOG3616 Selective LIM binding 98.7 9.2E-06 2E-10 72.7 22.0 169 63-257 738-906 (1636)
115 KOG3617 WD40 and TPR repeat-co 98.7 5.8E-06 1.3E-10 74.8 20.5 242 55-328 724-995 (1416)
116 PRK10370 formate-dependent nit 98.7 5.2E-06 1.1E-10 65.0 18.0 119 140-262 52-173 (198)
117 PRK10370 formate-dependent nit 98.7 5.8E-06 1.3E-10 64.7 18.3 154 170-338 23-181 (198)
118 KOG3081 Vesicle coat complex C 98.7 7.5E-05 1.6E-09 58.9 23.3 247 65-328 16-270 (299)
119 KOG0548 Molecular co-chaperone 98.7 0.00019 4.1E-09 62.2 27.9 305 18-330 33-456 (539)
120 COG5010 TadD Flp pilus assembl 98.7 9.9E-06 2.1E-10 63.6 18.6 157 131-292 70-226 (257)
121 PRK15179 Vi polysaccharide bio 98.6 2.2E-05 4.7E-10 73.0 23.3 201 57-276 28-230 (694)
122 COG4783 Putative Zn-dependent 98.6 0.00021 4.5E-09 61.4 26.8 200 107-329 252-454 (484)
123 COG4783 Putative Zn-dependent 98.6 7.6E-05 1.7E-09 63.9 23.8 207 72-303 252-462 (484)
124 KOG2053 Mitochondrial inherita 98.6 0.00047 1E-08 63.5 31.6 188 32-228 54-256 (932)
125 KOG3785 Uncharacterized conser 98.6 5.9E-05 1.3E-09 61.9 22.0 299 26-338 156-497 (557)
126 PRK15179 Vi polysaccharide bio 98.6 3.5E-05 7.6E-10 71.6 23.6 234 20-280 27-267 (694)
127 PRK15359 type III secretion sy 98.6 1.3E-06 2.8E-11 64.7 11.6 90 63-154 30-119 (144)
128 KOG3060 Uncharacterized conser 98.6 6.4E-05 1.4E-09 58.8 20.4 187 140-329 25-220 (289)
129 KOG0624 dsRNA-activated protei 98.5 0.0003 6.6E-09 57.7 25.0 304 53-367 34-373 (504)
130 PRK15359 type III secretion sy 98.5 1E-05 2.2E-10 59.9 15.0 92 237-329 28-121 (144)
131 KOG3060 Uncharacterized conser 98.5 9.7E-05 2.1E-09 57.8 20.5 189 34-227 25-220 (289)
132 KOG1127 TPR repeat-containing 98.5 3.9E-05 8.4E-10 71.1 20.6 164 21-191 492-658 (1238)
133 PF09976 TPR_21: Tetratricopep 98.5 2.2E-05 4.7E-10 58.4 15.7 22 241-262 56-77 (145)
134 KOG0985 Vesicle coat protein c 98.5 0.0003 6.5E-09 65.7 25.4 163 19-213 1102-1264(1666)
135 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.4E-10 58.4 13.8 92 132-226 22-113 (135)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-05 3.6E-10 68.3 15.6 121 237-362 173-295 (395)
137 KOG1127 TPR repeat-containing 98.4 0.0001 2.2E-09 68.5 21.1 116 243-360 860-992 (1238)
138 TIGR02552 LcrH_SycD type III s 98.4 4.5E-06 9.8E-11 61.3 10.2 95 58-154 18-112 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.2E-05 9.1E-10 65.8 17.0 118 135-259 177-294 (395)
140 KOG1914 mRNA cleavage and poly 98.3 0.0016 3.5E-08 56.8 28.2 343 16-367 15-467 (656)
141 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 47.1 4.2 33 235-267 2-34 (35)
142 PF10037 MRP-S27: Mitochondria 98.3 2.3E-05 4.9E-10 67.7 13.7 120 229-348 62-186 (429)
143 PF09976 TPR_21: Tetratricopep 98.3 6.2E-05 1.3E-09 55.9 14.5 19 173-191 58-76 (145)
144 KOG0550 Molecular chaperone (D 98.3 0.00033 7.2E-09 58.8 19.1 58 26-85 54-111 (486)
145 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.8E-11 46.0 4.3 34 302-335 2-35 (35)
146 PF13812 PPR_3: Pentatricopept 98.2 2.3E-06 5.1E-11 45.6 4.3 32 235-266 3-34 (34)
147 PF10037 MRP-S27: Mitochondria 98.2 1.7E-05 3.7E-10 68.5 11.5 122 124-245 63-185 (429)
148 PF13812 PPR_3: Pentatricopept 98.2 2.4E-06 5.2E-11 45.5 4.1 32 200-231 3-34 (34)
149 KOG2053 Mitochondrial inherita 98.2 0.0014 2.9E-08 60.6 23.1 224 101-332 18-258 (932)
150 PF08579 RPM2: Mitochondrial r 98.2 5.5E-05 1.2E-09 51.4 10.0 76 169-244 31-115 (120)
151 COG3898 Uncharacterized membra 98.1 0.0034 7.4E-08 52.6 27.9 26 165-190 190-215 (531)
152 PF08579 RPM2: Mitochondrial r 98.1 7.5E-05 1.6E-09 50.7 9.9 79 202-280 29-116 (120)
153 cd00189 TPR Tetratricopeptide 98.1 7.8E-05 1.7E-09 50.5 10.6 92 272-364 4-97 (100)
154 PRK15363 pathogenicity island 98.1 0.00012 2.7E-09 53.6 11.6 85 277-362 44-130 (157)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.3E-05 1.8E-09 53.1 10.7 99 23-121 4-105 (119)
156 PF14938 SNAP: Soluble NSF att 98.1 0.0013 2.9E-08 54.9 18.9 26 166-191 158-183 (282)
157 KOG2041 WD40 repeat protein [G 98.0 0.00086 1.9E-08 60.2 18.0 247 7-292 643-902 (1189)
158 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00015 3.2E-09 51.8 11.5 96 235-330 4-106 (119)
159 PF12895 Apc3: Anaphase-promot 98.0 1.1E-05 2.3E-10 53.6 4.3 48 35-82 3-50 (84)
160 PRK10866 outer membrane biogen 98.0 0.0025 5.4E-08 51.7 18.7 178 169-363 38-240 (243)
161 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.2E-10 42.0 3.3 29 235-263 2-30 (31)
162 cd00189 TPR Tetratricopeptide 98.0 0.00026 5.7E-09 47.8 11.5 92 168-261 5-96 (100)
163 PF01535 PPR: PPR repeat; Int 98.0 1.4E-05 2.9E-10 41.5 3.5 29 200-228 2-30 (31)
164 PF05843 Suf: Suppressor of fo 97.9 0.00057 1.2E-08 56.9 14.6 126 164-292 2-131 (280)
165 PF12895 Apc3: Anaphase-promot 97.9 2.7E-05 5.9E-10 51.6 5.5 20 133-152 31-50 (84)
166 PF05843 Suf: Suppressor of fo 97.9 0.00027 5.9E-09 58.8 12.6 129 23-155 3-135 (280)
167 PF06239 ECSIT: Evolutionarily 97.9 0.00038 8.2E-09 53.6 11.8 105 160-283 44-153 (228)
168 PRK02603 photosystem I assembl 97.9 0.0013 2.8E-08 50.5 15.2 62 130-191 38-100 (172)
169 PRK10153 DNA-binding transcrip 97.9 0.00037 8.1E-09 62.9 13.8 64 126-192 419-482 (517)
170 PRK15363 pathogenicity island 97.9 0.00038 8.2E-09 51.0 11.0 96 59-156 37-132 (157)
171 PF13414 TPR_11: TPR repeat; P 97.9 5.2E-05 1.1E-09 48.1 5.9 66 299-365 2-68 (69)
172 PRK02603 photosystem I assembl 97.9 0.00024 5.2E-09 54.5 10.4 65 22-86 36-101 (172)
173 PLN03088 SGT1, suppressor of 97.9 0.0002 4.3E-09 61.8 10.9 93 27-122 8-100 (356)
174 CHL00033 ycf3 photosystem I as 97.8 0.00059 1.3E-08 52.1 12.4 61 201-261 38-100 (168)
175 PLN03088 SGT1, suppressor of 97.8 0.00091 2E-08 57.8 14.8 93 133-228 8-100 (356)
176 CHL00033 ycf3 photosystem I as 97.8 0.00062 1.3E-08 52.0 12.4 94 163-257 35-137 (168)
177 PRK10866 outer membrane biogen 97.8 0.01 2.2E-07 48.2 19.7 179 62-260 37-239 (243)
178 PF06239 ECSIT: Evolutionarily 97.8 0.00036 7.9E-09 53.7 10.5 101 196-315 45-153 (228)
179 PF14938 SNAP: Soluble NSF att 97.8 0.0044 9.5E-08 51.8 17.9 92 171-262 122-225 (282)
180 PF13432 TPR_16: Tetratricopep 97.8 8.2E-05 1.8E-09 46.5 5.5 60 306-366 3-62 (65)
181 KOG0553 TPR repeat-containing 97.8 0.00058 1.3E-08 55.1 11.3 98 207-307 90-189 (304)
182 PRK10153 DNA-binding transcrip 97.8 0.0036 7.7E-08 56.7 17.5 141 194-338 333-489 (517)
183 KOG0550 Molecular chaperone (D 97.7 0.0055 1.2E-07 51.8 16.1 258 66-330 58-351 (486)
184 PF14559 TPR_19: Tetratricopep 97.7 0.00013 2.8E-09 46.1 5.3 55 311-366 2-56 (68)
185 PF13281 DUF4071: Domain of un 97.6 0.036 7.7E-07 47.5 20.5 161 167-329 145-334 (374)
186 PF04840 Vps16_C: Vps16, C-ter 97.6 0.034 7.4E-07 47.0 24.4 103 203-322 182-284 (319)
187 PF13414 TPR_11: TPR repeat; P 97.6 0.00023 5E-09 45.1 5.7 65 20-86 2-67 (69)
188 KOG0553 TPR repeat-containing 97.6 0.00061 1.3E-08 55.0 9.0 104 65-173 89-192 (304)
189 COG4700 Uncharacterized protei 97.6 0.017 3.8E-07 43.4 17.0 129 195-325 86-218 (251)
190 PF13281 DUF4071: Domain of un 97.6 0.026 5.7E-07 48.2 19.0 173 198-370 141-340 (374)
191 PF14559 TPR_19: Tetratricopep 97.6 0.00027 5.9E-09 44.6 5.6 21 98-118 31-51 (68)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.006 1.3E-07 43.1 12.7 88 240-327 8-102 (120)
193 PF13432 TPR_16: Tetratricopep 97.6 0.00042 9.2E-09 43.2 6.4 59 27-87 3-61 (65)
194 PRK15331 chaperone protein Sic 97.5 0.0046 9.9E-08 45.7 12.3 83 244-328 48-133 (165)
195 PF12688 TPR_5: Tetratrico pep 97.5 0.015 3.3E-07 41.1 14.3 88 171-260 9-102 (120)
196 PF04840 Vps16_C: Vps16, C-ter 97.5 0.052 1.1E-06 45.9 25.9 107 234-357 178-284 (319)
197 KOG1130 Predicted G-alpha GTPa 97.4 0.002 4.2E-08 54.4 10.4 283 29-329 25-344 (639)
198 COG4235 Cytochrome c biogenesi 97.4 0.0049 1.1E-07 50.1 12.3 101 160-262 153-256 (287)
199 PF13525 YfiO: Outer membrane 97.4 0.016 3.5E-07 45.8 15.0 171 170-356 12-199 (203)
200 COG4235 Cytochrome c biogenesi 97.4 0.0025 5.4E-08 51.7 10.3 129 37-172 138-269 (287)
201 PF13371 TPR_9: Tetratricopept 97.4 0.00067 1.5E-08 43.5 5.9 58 308-366 3-60 (73)
202 KOG2796 Uncharacterized conser 97.3 0.012 2.5E-07 46.9 12.7 129 97-227 182-315 (366)
203 KOG2041 WD40 repeat protein [G 97.3 0.14 3E-06 46.9 22.8 53 126-188 851-903 (1189)
204 PF12921 ATP13: Mitochondrial 97.3 0.0081 1.8E-07 42.9 10.8 101 57-177 2-102 (126)
205 KOG1538 Uncharacterized conser 97.3 0.1 2.2E-06 47.3 19.4 86 235-329 749-846 (1081)
206 PF13525 YfiO: Outer membrane 97.3 0.064 1.4E-06 42.4 17.0 59 98-156 11-71 (203)
207 PRK10803 tol-pal system protei 97.2 0.005 1.1E-07 50.4 10.2 94 234-329 144-246 (263)
208 PRK10803 tol-pal system protei 97.2 0.014 3E-07 47.9 12.5 95 130-227 146-246 (263)
209 PF13424 TPR_12: Tetratricopep 97.2 0.001 2.2E-08 43.3 4.9 62 301-362 6-73 (78)
210 PF10300 DUF3808: Protein of u 97.1 0.029 6.3E-07 50.5 15.4 178 183-367 177-379 (468)
211 PF03704 BTAD: Bacterial trans 97.1 0.016 3.4E-07 43.0 11.7 69 201-270 65-138 (146)
212 PF03704 BTAD: Bacterial trans 97.1 0.004 8.6E-08 46.3 8.3 69 166-235 65-138 (146)
213 PF04053 Coatomer_WDAD: Coatom 97.1 0.025 5.4E-07 50.2 14.3 156 68-258 272-427 (443)
214 COG4700 Uncharacterized protei 97.1 0.074 1.6E-06 40.2 17.7 130 158-291 84-216 (251)
215 PF09205 DUF1955: Domain of un 97.0 0.038 8.3E-07 39.0 11.6 137 209-367 13-152 (161)
216 PF12921 ATP13: Mitochondrial 97.0 0.016 3.5E-07 41.4 10.2 94 232-343 1-96 (126)
217 PF13371 TPR_9: Tetratricopept 97.0 0.0021 4.6E-08 41.1 5.4 57 29-87 3-59 (73)
218 KOG2796 Uncharacterized conser 97.0 0.14 3.1E-06 41.0 21.5 141 199-341 178-325 (366)
219 PF13424 TPR_12: Tetratricopep 96.9 0.0012 2.7E-08 42.9 3.6 64 21-84 5-73 (78)
220 PRK15331 chaperone protein Sic 96.9 0.025 5.4E-07 42.0 10.5 87 31-120 47-133 (165)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.019 4.2E-07 49.8 11.2 66 19-86 73-141 (453)
222 COG3118 Thioredoxin domain-con 96.8 0.063 1.4E-06 43.8 13.2 150 64-219 141-293 (304)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.29 6.3E-06 42.5 27.0 127 234-362 398-529 (660)
224 PF07079 DUF1347: Protein of u 96.8 0.3 6.5E-06 42.4 30.0 69 293-363 449-523 (549)
225 PF04053 Coatomer_WDAD: Coatom 96.8 0.09 1.9E-06 46.7 15.1 159 29-223 269-427 (443)
226 COG3898 Uncharacterized membra 96.7 0.33 7E-06 41.4 29.2 295 23-329 84-392 (531)
227 PF08631 SPO22: Meiosis protei 96.7 0.31 6.8E-06 40.6 23.1 62 129-192 86-150 (278)
228 COG3118 Thioredoxin domain-con 96.6 0.29 6.3E-06 40.1 15.6 184 65-256 111-295 (304)
229 KOG3941 Intermediate in Toll s 96.6 0.039 8.4E-07 44.5 10.0 34 215-248 140-173 (406)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.013 2.9E-07 50.8 8.0 97 266-366 73-176 (453)
231 PF09205 DUF1955: Domain of un 96.5 0.099 2.1E-06 37.0 10.6 137 105-264 15-151 (161)
232 PF10300 DUF3808: Protein of u 96.5 0.25 5.4E-06 44.6 15.9 164 60-226 191-375 (468)
233 COG4105 ComL DNA uptake lipopr 96.4 0.36 7.9E-06 38.7 19.0 76 28-103 41-117 (254)
234 KOG1538 Uncharacterized conser 96.4 0.6 1.3E-05 42.6 17.2 195 75-292 618-828 (1081)
235 COG4649 Uncharacterized protei 96.4 0.27 5.9E-06 36.8 14.1 131 59-191 61-195 (221)
236 KOG2114 Vacuolar assembly/sort 96.4 0.18 3.8E-06 47.1 14.2 244 97-365 339-591 (933)
237 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.73 1.6E-05 40.2 20.7 145 197-346 396-546 (660)
238 PF04184 ST7: ST7 protein; In 96.2 0.66 1.4E-05 41.0 16.2 165 26-206 173-339 (539)
239 KOG1941 Acetylcholine receptor 96.1 0.24 5.3E-06 41.7 12.6 52 239-290 128-184 (518)
240 smart00299 CLH Clathrin heavy 96.1 0.35 7.6E-06 35.5 15.0 42 26-69 12-53 (140)
241 KOG2610 Uncharacterized conser 96.1 0.3 6.5E-06 40.7 12.9 153 137-292 113-271 (491)
242 KOG1130 Predicted G-alpha GTPa 96.1 0.046 1E-06 46.5 8.6 240 21-261 55-343 (639)
243 COG1729 Uncharacterized protei 96.0 0.23 4.9E-06 40.2 11.9 94 235-329 144-244 (262)
244 PF13428 TPR_14: Tetratricopep 96.0 0.02 4.3E-07 32.2 4.5 40 301-341 2-41 (44)
245 KOG2280 Vacuolar assembly/sort 96.0 1.3 2.8E-05 41.2 26.7 318 24-360 440-795 (829)
246 COG1729 Uncharacterized protei 96.0 0.11 2.5E-06 41.8 10.1 98 129-227 144-244 (262)
247 PF13428 TPR_14: Tetratricopep 96.0 0.018 3.8E-07 32.4 4.1 40 22-63 2-41 (44)
248 KOG4555 TPR repeat-containing 96.0 0.33 7.1E-06 34.4 10.8 91 136-228 52-145 (175)
249 smart00299 CLH Clathrin heavy 95.9 0.43 9.4E-06 35.0 15.6 35 174-209 18-52 (140)
250 COG1747 Uncharacterized N-term 95.9 1.2 2.5E-05 39.7 17.4 193 8-209 53-250 (711)
251 KOG0543 FKBP-type peptidyl-pro 95.9 0.063 1.4E-06 45.7 8.5 57 97-154 262-318 (397)
252 KOG1585 Protein required for f 95.9 0.7 1.5E-05 36.8 15.7 22 271-292 193-214 (308)
253 PF13170 DUF4003: Protein of u 95.9 0.92 2E-05 38.1 19.3 131 108-240 78-224 (297)
254 KOG3941 Intermediate in Toll s 95.8 0.12 2.7E-06 41.8 9.3 107 160-285 64-175 (406)
255 KOG2114 Vacuolar assembly/sort 95.8 1.8 3.8E-05 40.9 22.4 55 64-119 404-458 (933)
256 KOG1941 Acetylcholine receptor 95.8 1.1 2.3E-05 38.1 15.6 48 31-78 16-64 (518)
257 KOG1585 Protein required for f 95.7 0.82 1.8E-05 36.5 14.5 54 201-255 193-249 (308)
258 KOG2280 Vacuolar assembly/sort 95.7 1.8 4E-05 40.3 27.8 298 53-363 428-772 (829)
259 COG0457 NrfG FOG: TPR repeat [ 95.6 0.89 1.9E-05 36.2 27.0 223 105-329 36-265 (291)
260 KOG0890 Protein kinase of the 95.6 4 8.7E-05 43.5 27.1 323 26-368 1388-1735(2382)
261 COG4105 ComL DNA uptake lipopr 95.6 0.99 2.2E-05 36.3 19.6 176 172-366 43-235 (254)
262 KOG0543 FKBP-type peptidyl-pro 95.5 0.5 1.1E-05 40.5 12.5 92 135-227 216-320 (397)
263 PF04184 ST7: ST7 protein; In 95.5 1.7 3.7E-05 38.6 16.0 59 270-328 261-323 (539)
264 PF07079 DUF1347: Protein of u 95.4 1.7 3.6E-05 38.1 27.2 308 24-340 131-530 (549)
265 KOG4555 TPR repeat-containing 95.3 0.48 1E-05 33.7 9.6 95 99-194 50-146 (175)
266 PRK11906 transcriptional regul 95.3 1.2 2.5E-05 39.3 14.1 111 108-223 320-432 (458)
267 PF13512 TPR_18: Tetratricopep 95.2 0.82 1.8E-05 33.3 11.9 54 174-227 21-76 (142)
268 COG4649 Uncharacterized protei 95.1 1.1 2.3E-05 33.8 13.0 131 101-232 67-201 (221)
269 COG4785 NlpI Lipoprotein NlpI, 95.0 1.3 2.9E-05 34.6 13.1 86 138-227 76-162 (297)
270 PF13431 TPR_17: Tetratricopep 94.8 0.038 8.1E-07 29.0 2.7 32 323-355 2-33 (34)
271 COG3629 DnrI DNA-binding trans 94.8 0.54 1.2E-05 38.7 10.3 77 200-277 155-236 (280)
272 PF13512 TPR_18: Tetratricopep 94.6 1.2 2.6E-05 32.4 12.8 84 23-106 12-96 (142)
273 PF02259 FAT: FAT domain; Int 94.5 2.9 6.3E-05 36.2 19.5 61 232-292 145-208 (352)
274 PF13176 TPR_7: Tetratricopept 94.5 0.11 2.3E-06 27.7 3.9 25 303-327 2-26 (36)
275 COG2976 Uncharacterized protei 94.5 1.7 3.7E-05 33.4 12.9 86 277-365 98-189 (207)
276 PF10602 RPN7: 26S proteasome 94.4 0.82 1.8E-05 35.1 10.2 60 59-118 38-99 (177)
277 KOG1920 IkappaB kinase complex 94.3 6.2 0.00013 39.2 22.4 28 93-120 791-820 (1265)
278 PF09613 HrpB1_HrpK: Bacterial 94.3 1.6 3.5E-05 32.5 10.9 54 68-122 21-74 (160)
279 COG3629 DnrI DNA-binding trans 94.3 0.9 1.9E-05 37.4 10.5 78 164-242 154-236 (280)
280 PRK11906 transcriptional regul 94.2 3.7 8E-05 36.4 18.0 107 214-324 320-431 (458)
281 KOG2610 Uncharacterized conser 94.2 3 6.5E-05 35.1 17.1 155 102-260 113-274 (491)
282 PF13176 TPR_7: Tetratricopept 94.2 0.096 2.1E-06 27.9 3.4 26 337-362 1-26 (36)
283 PF10602 RPN7: 26S proteasome 94.2 0.96 2.1E-05 34.7 10.1 60 130-190 39-100 (177)
284 PF02259 FAT: FAT domain; Int 94.1 3.6 7.7E-05 35.7 18.2 65 299-363 145-212 (352)
285 PF08631 SPO22: Meiosis protei 94.1 3.1 6.6E-05 34.8 25.9 19 344-362 255-273 (278)
286 KOG4570 Uncharacterized conser 94.0 0.62 1.3E-05 38.5 9.0 98 193-292 59-159 (418)
287 COG0457 NrfG FOG: TPR repeat [ 94.0 2.5 5.4E-05 33.6 30.3 217 71-292 37-260 (291)
288 KOG1550 Extracellular protein 93.7 5.9 0.00013 36.9 18.5 148 174-330 260-427 (552)
289 KOG4570 Uncharacterized conser 93.7 1.2 2.5E-05 37.0 9.9 104 122-227 59-164 (418)
290 PF00637 Clathrin: Region in C 93.6 0.0061 1.3E-07 45.1 -2.8 129 26-178 12-140 (143)
291 COG2909 MalT ATP-dependent tra 93.5 7.6 0.00016 37.3 25.6 165 21-192 347-526 (894)
292 COG4785 NlpI Lipoprotein NlpI, 93.4 3.1 6.8E-05 32.7 11.7 161 91-262 98-266 (297)
293 PF07163 Pex26: Pex26 protein; 93.1 2.9 6.3E-05 34.2 11.2 128 23-150 37-181 (309)
294 TIGR02561 HrpB1_HrpK type III 93.1 2.6 5.6E-05 30.9 11.8 52 69-122 22-74 (153)
295 PF02284 COX5A: Cytochrome c o 93.0 1.9 4.1E-05 29.1 8.4 63 107-171 25-87 (108)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 92.9 1.5 3.2E-05 29.3 7.7 50 107-156 22-71 (103)
297 KOG1258 mRNA processing protei 92.8 7.5 0.00016 35.5 23.0 323 20-355 44-420 (577)
298 PF13929 mRNA_stabil: mRNA sta 92.6 5.2 0.00011 33.1 16.0 138 141-278 142-288 (292)
299 PF00515 TPR_1: Tetratricopept 92.6 0.45 9.9E-06 24.6 4.4 27 302-328 3-29 (34)
300 PF07035 Mic1: Colon cancer-as 92.5 3.6 7.9E-05 31.1 15.1 134 183-327 14-147 (167)
301 KOG1550 Extracellular protein 92.4 9.4 0.0002 35.6 21.5 180 37-228 228-427 (552)
302 PF13374 TPR_10: Tetratricopep 92.4 0.14 3E-06 28.1 2.3 26 302-327 4-29 (42)
303 PF07035 Mic1: Colon cancer-as 92.4 3.8 8.2E-05 31.0 13.5 36 114-149 16-51 (167)
304 PF11207 DUF2989: Protein of u 92.2 2.2 4.8E-05 33.1 9.2 71 216-287 124-197 (203)
305 COG2976 Uncharacterized protei 92.2 4.4 9.5E-05 31.3 13.6 125 198-330 54-189 (207)
306 PF00515 TPR_1: Tetratricopept 92.1 0.24 5.2E-06 25.7 3.0 31 336-366 2-32 (34)
307 PF07719 TPR_2: Tetratricopept 92.0 0.27 5.8E-06 25.4 3.1 26 338-363 4-29 (34)
308 PF07719 TPR_2: Tetratricopept 92.0 0.59 1.3E-05 24.0 4.4 29 301-329 2-30 (34)
309 PRK15180 Vi polysaccharide bio 91.7 3.8 8.1E-05 36.3 10.9 121 244-367 300-423 (831)
310 PF10345 Cohesin_load: Cohesin 91.6 12 0.00027 35.4 29.2 186 38-224 38-251 (608)
311 PF13431 TPR_17: Tetratricopep 91.6 0.17 3.7E-06 26.5 1.9 24 54-77 10-33 (34)
312 PF09613 HrpB1_HrpK: Bacterial 91.5 4.6 0.0001 30.2 12.5 17 210-226 56-72 (160)
313 PF02284 COX5A: Cytochrome c o 91.4 3.2 6.9E-05 28.1 8.1 41 252-292 29-69 (108)
314 KOG4648 Uncharacterized conser 91.0 0.54 1.2E-05 39.4 5.1 86 241-328 105-193 (536)
315 KOG0276 Vesicle coat complex C 90.8 5.5 0.00012 36.5 11.3 158 102-300 596-753 (794)
316 PF11207 DUF2989: Protein of u 90.8 3.1 6.8E-05 32.3 8.8 78 277-355 116-198 (203)
317 PF13374 TPR_10: Tetratricopep 90.5 0.81 1.8E-05 24.9 4.3 33 336-368 3-35 (42)
318 PF07721 TPR_4: Tetratricopept 90.3 0.66 1.4E-05 22.4 3.2 21 339-359 5-25 (26)
319 KOG4234 TPR repeat-containing 90.2 1.9 4.1E-05 33.4 7.0 89 241-330 103-198 (271)
320 KOG1920 IkappaB kinase complex 90.2 22 0.00047 35.7 19.2 104 204-324 945-1050(1265)
321 KOG1258 mRNA processing protei 90.2 15 0.00032 33.7 31.5 88 32-121 90-180 (577)
322 KOG0276 Vesicle coat complex C 90.1 11 0.00023 34.8 12.4 148 137-325 596-746 (794)
323 KOG2582 COP9 signalosome, subu 89.6 12 0.00027 32.0 12.6 128 18-154 72-210 (422)
324 PF13181 TPR_8: Tetratricopept 89.5 0.76 1.6E-05 23.7 3.4 27 337-363 3-29 (34)
325 PF13174 TPR_6: Tetratricopept 89.3 0.38 8.2E-06 24.6 2.1 23 306-328 6-28 (33)
326 PF13929 mRNA_stabil: mRNA sta 89.2 12 0.00025 31.1 17.7 114 179-292 144-262 (292)
327 PF00637 Clathrin: Region in C 89.1 0.15 3.3E-06 37.6 0.6 84 63-153 13-96 (143)
328 PF13181 TPR_8: Tetratricopept 88.7 1.5 3.2E-05 22.5 4.2 29 301-329 2-30 (34)
329 PF10579 Rapsyn_N: Rapsyn N-te 88.7 1.9 4.1E-05 27.6 5.1 46 312-357 18-65 (80)
330 COG4455 ImpE Protein of avirul 88.7 2.7 5.9E-05 33.0 6.9 52 28-81 8-59 (273)
331 COG4455 ImpE Protein of avirul 88.4 5.1 0.00011 31.6 8.2 51 171-222 9-59 (273)
332 PF08424 NRDE-2: NRDE-2, neces 88.2 16 0.00034 31.4 13.2 80 73-154 47-129 (321)
333 TIGR03504 FimV_Cterm FimV C-te 88.0 0.81 1.8E-05 25.6 2.9 25 341-365 5-29 (44)
334 TIGR02561 HrpB1_HrpK type III 87.9 8.9 0.00019 28.2 11.4 18 210-227 56-73 (153)
335 PRK15180 Vi polysaccharide bio 87.8 17 0.00037 32.5 11.8 88 173-262 333-420 (831)
336 PRK09687 putative lyase; Provi 87.3 16 0.00035 30.5 24.3 233 55-311 35-278 (280)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 7.6 0.00016 26.1 9.0 41 252-292 26-66 (103)
338 KOG1464 COP9 signalosome, subu 86.4 17 0.00036 29.8 15.2 27 302-328 193-219 (440)
339 PF09986 DUF2225: Uncharacteri 86.4 11 0.00025 29.9 9.6 24 341-364 171-194 (214)
340 COG5159 RPN6 26S proteasome re 86.4 17 0.00037 30.1 10.4 121 239-359 9-149 (421)
341 PF08311 Mad3_BUB1_I: Mad3/BUB 86.4 10 0.00022 27.2 8.7 44 318-361 81-125 (126)
342 KOG0687 26S proteasome regulat 86.3 19 0.00041 30.4 13.2 24 236-259 107-130 (393)
343 KOG4279 Serine/threonine prote 85.6 7.6 0.00017 36.6 9.1 119 145-269 181-321 (1226)
344 TIGR03504 FimV_Cterm FimV C-te 85.3 2.1 4.5E-05 24.0 3.6 26 305-330 4-29 (44)
345 KOG1586 Protein required for f 85.0 18 0.0004 29.0 14.8 13 280-292 166-178 (288)
346 PF13174 TPR_6: Tetratricopept 84.6 2.2 4.7E-05 21.6 3.4 29 338-366 3-31 (33)
347 PF13170 DUF4003: Protein of u 83.6 26 0.00056 29.6 21.7 131 143-276 78-225 (297)
348 COG1747 Uncharacterized N-term 83.6 34 0.00075 31.0 22.4 195 89-292 63-264 (711)
349 COG3947 Response regulator con 83.4 25 0.00054 29.3 14.0 54 237-291 283-336 (361)
350 KOG1464 COP9 signalosome, subu 83.0 25 0.00054 28.9 16.7 183 70-253 40-251 (440)
351 smart00028 TPR Tetratricopepti 82.9 2.4 5.3E-05 20.6 3.3 25 339-363 5-29 (34)
352 PF07163 Pex26: Pex26 protein; 82.0 28 0.0006 28.8 12.7 87 170-256 90-181 (309)
353 PF11846 DUF3366: Domain of un 81.6 8.3 0.00018 30.1 7.1 36 293-328 137-172 (193)
354 KOG4234 TPR repeat-containing 81.4 24 0.00051 27.7 9.6 88 137-227 105-197 (271)
355 PF10366 Vps39_1: Vacuolar sor 81.4 5.3 0.00012 27.7 5.2 40 283-328 28-67 (108)
356 PF06552 TOM20_plant: Plant sp 81.2 5.9 0.00013 30.2 5.6 66 37-105 7-82 (186)
357 PF10579 Rapsyn_N: Rapsyn N-te 81.0 4.9 0.00011 25.8 4.4 46 139-184 18-64 (80)
358 PRK11619 lytic murein transgly 80.9 53 0.0012 31.4 30.3 312 31-363 43-374 (644)
359 KOG4507 Uncharacterized conser 80.7 10 0.00022 34.8 7.7 150 55-209 569-721 (886)
360 PF11846 DUF3366: Domain of un 80.6 9.5 0.00021 29.8 7.1 35 158-192 139-173 (193)
361 PF10345 Cohesin_load: Cohesin 80.3 55 0.0012 31.1 18.9 190 162-361 29-251 (608)
362 KOG4642 Chaperone-dependent E3 79.8 31 0.00066 27.9 10.2 78 211-292 23-102 (284)
363 KOG4648 Uncharacterized conser 79.5 17 0.00037 30.9 8.2 53 135-190 105-158 (536)
364 COG2909 MalT ATP-dependent tra 79.3 66 0.0014 31.5 26.4 265 97-361 365-685 (894)
365 KOG4077 Cytochrome c oxidase, 79.3 16 0.00034 26.0 6.8 35 258-292 74-108 (149)
366 KOG1308 Hsp70-interacting prot 78.8 1.6 3.4E-05 36.7 2.2 89 34-125 127-215 (377)
367 KOG2659 LisH motif-containing 78.8 32 0.00069 27.5 9.8 18 275-292 71-88 (228)
368 KOG3807 Predicted membrane pro 78.8 40 0.00087 28.7 11.3 60 133-192 281-340 (556)
369 KOG4077 Cytochrome c oxidase, 78.6 21 0.00046 25.4 7.8 47 110-156 67-113 (149)
370 PF04910 Tcf25: Transcriptiona 76.0 54 0.0012 28.7 17.1 117 31-153 20-165 (360)
371 COG0790 FOG: TPR repeat, SEL1 76.0 46 0.001 27.9 19.1 144 139-292 53-215 (292)
372 PRK10941 hypothetical protein; 75.3 28 0.0006 28.9 8.5 75 131-208 185-261 (269)
373 PF07575 Nucleopor_Nup85: Nup8 75.0 25 0.00054 33.0 9.2 31 245-275 507-537 (566)
374 PF11838 ERAP1_C: ERAP1-like C 74.8 53 0.0011 28.0 21.8 109 179-292 146-261 (324)
375 COG3947 Response regulator con 74.3 51 0.0011 27.6 15.6 56 305-361 284-339 (361)
376 TIGR02508 type_III_yscG type I 74.3 25 0.00053 24.0 8.4 52 206-263 47-98 (115)
377 PF04097 Nic96: Nup93/Nic96; 74.0 84 0.0018 30.0 24.4 89 273-362 419-532 (613)
378 PF04097 Nic96: Nup93/Nic96; 73.3 87 0.0019 29.9 21.6 84 204-292 264-351 (613)
379 PRK10564 maltose regulon perip 72.7 12 0.00025 31.3 5.6 44 159-202 252-296 (303)
380 KOG1308 Hsp70-interacting prot 71.9 4.2 9.2E-05 34.3 3.0 94 102-199 124-218 (377)
381 COG0735 Fur Fe2+/Zn2+ uptake r 71.4 31 0.00067 25.5 7.2 62 220-282 8-69 (145)
382 PF14689 SPOB_a: Sensor_kinase 71.4 7.3 0.00016 23.8 3.3 23 340-362 28-50 (62)
383 PF14561 TPR_20: Tetratricopep 71.2 28 0.0006 23.2 6.9 31 56-86 21-51 (90)
384 PF11817 Foie-gras_1: Foie gra 70.8 29 0.00063 28.4 7.7 61 165-225 180-245 (247)
385 PF13762 MNE1: Mitochondrial s 70.7 40 0.00087 24.9 10.0 51 298-348 77-128 (145)
386 KOG0687 26S proteasome regulat 70.7 67 0.0014 27.4 12.1 25 165-189 106-130 (393)
387 PF11663 Toxin_YhaV: Toxin wit 70.6 5.3 0.00012 28.7 2.9 28 212-241 109-136 (140)
388 KOG2063 Vacuolar assembly/sort 70.0 1.2E+02 0.0026 30.1 16.2 182 166-347 507-744 (877)
389 PRK11639 zinc uptake transcrip 70.0 36 0.00079 25.9 7.5 36 314-349 39-74 (169)
390 PF12862 Apc5: Anaphase-promot 69.8 25 0.00055 23.5 6.0 24 306-329 47-70 (94)
391 PF11848 DUF3368: Domain of un 69.0 19 0.00042 20.5 4.8 36 308-343 10-45 (48)
392 PF09986 DUF2225: Uncharacteri 68.8 58 0.0013 26.0 11.0 31 302-332 167-197 (214)
393 PF12862 Apc5: Anaphase-promot 68.5 33 0.00071 23.0 6.6 19 274-292 47-65 (94)
394 PF11817 Foie-gras_1: Foie gra 68.0 35 0.00075 28.0 7.6 57 304-360 182-243 (247)
395 PRK10941 hypothetical protein; 67.8 52 0.0011 27.4 8.5 59 60-119 184-242 (269)
396 PHA02875 ankyrin repeat protei 67.4 59 0.0013 29.0 9.7 203 147-360 15-224 (413)
397 cd08819 CARD_MDA5_2 Caspase ac 67.2 33 0.00072 22.6 7.5 15 246-260 49-63 (88)
398 PF09670 Cas_Cas02710: CRISPR- 66.9 92 0.002 27.6 12.4 55 172-227 140-198 (379)
399 COG4259 Uncharacterized protei 66.9 37 0.00079 23.0 5.9 56 73-130 53-108 (121)
400 cd08819 CARD_MDA5_2 Caspase ac 66.9 34 0.00074 22.6 6.9 67 181-253 20-86 (88)
401 PF14689 SPOB_a: Sensor_kinase 66.7 20 0.00043 21.8 4.5 21 169-189 29-49 (62)
402 KOG2396 HAT (Half-A-TPR) repea 66.6 1E+02 0.0022 28.1 25.9 97 265-363 456-558 (568)
403 COG0735 Fur Fe2+/Zn2+ uptake r 66.5 17 0.00036 26.9 4.9 58 83-141 12-69 (145)
404 PF06552 TOM20_plant: Plant sp 66.3 58 0.0013 25.1 9.0 73 181-263 53-137 (186)
405 KOG4507 Uncharacterized conser 66.1 75 0.0016 29.6 9.4 115 160-276 604-718 (886)
406 KOG3364 Membrane protein invol 65.8 50 0.0011 24.1 6.9 66 265-330 29-101 (149)
407 KOG2066 Vacuolar assembly/sort 64.9 1.4E+02 0.003 28.9 19.8 153 28-191 363-533 (846)
408 PF09670 Cas_Cas02710: CRISPR- 64.6 75 0.0016 28.1 9.4 58 98-156 137-198 (379)
409 smart00804 TAP_C C-terminal do 64.2 6.2 0.00014 24.2 1.9 25 34-58 38-62 (63)
410 KOG0376 Serine-threonine phosp 64.2 22 0.00048 31.7 5.9 106 27-137 10-115 (476)
411 PRK10564 maltose regulon perip 64.0 18 0.0004 30.2 5.1 36 236-271 260-295 (303)
412 PF02631 RecX: RecX family; I 63.9 49 0.0011 23.4 8.6 107 74-186 9-116 (121)
413 PF09797 NatB_MDM20: N-acetylt 63.8 45 0.00098 29.2 8.0 118 60-188 183-311 (365)
414 PF04762 IKI3: IKI3 family; I 63.6 1.3E+02 0.0028 30.5 11.6 110 165-292 814-925 (928)
415 smart00777 Mad3_BUB1_I Mad3/BU 63.5 52 0.0011 23.6 9.0 44 317-360 80-124 (125)
416 PF10255 Paf67: RNA polymerase 63.5 66 0.0014 28.6 8.6 93 236-328 78-192 (404)
417 COG2137 OraA Uncharacterized p 63.5 66 0.0014 24.7 8.9 109 77-189 55-164 (174)
418 PRK13184 pknD serine/threonine 63.0 1.8E+02 0.0038 29.4 26.4 92 25-120 479-580 (932)
419 PF03745 DUF309: Domain of unk 62.9 32 0.0007 21.0 5.3 48 310-357 9-61 (62)
420 PF10255 Paf67: RNA polymerase 62.5 81 0.0018 28.0 9.0 97 196-292 73-188 (404)
421 PF04910 Tcf25: Transcriptiona 61.4 1.1E+02 0.0025 26.8 15.4 65 299-363 99-167 (360)
422 PF09454 Vps23_core: Vps23 cor 61.4 30 0.00065 21.4 4.6 49 19-69 6-54 (65)
423 PRK11619 lytic murein transgly 60.6 1.6E+02 0.0035 28.3 30.5 55 204-259 318-372 (644)
424 PF03943 TAP_C: TAP C-terminal 60.6 4.6 0.0001 23.5 0.9 25 34-58 26-50 (51)
425 COG0790 FOG: TPR repeat, SEL1 60.2 1E+02 0.0022 25.8 20.8 116 106-228 91-221 (292)
426 KOG2300 Uncharacterized conser 60.2 1.4E+02 0.003 27.3 18.5 153 136-292 332-509 (629)
427 PF06957 COPI_C: Coatomer (COP 59.9 1E+02 0.0022 27.7 9.1 57 302-373 302-358 (422)
428 KOG2297 Predicted translation 59.7 1.1E+02 0.0024 25.9 12.6 21 300-320 321-341 (412)
429 PF11848 DUF3368: Domain of un 59.6 31 0.00067 19.7 5.0 31 245-275 14-44 (48)
430 PF14853 Fis1_TPR_C: Fis1 C-te 58.8 35 0.00076 20.0 4.8 31 306-338 7-37 (53)
431 PRK09687 putative lyase; Provi 58.5 1.1E+02 0.0024 25.7 27.5 226 97-346 42-278 (280)
432 cd00280 TRFH Telomeric Repeat 58.4 60 0.0013 25.1 6.5 67 108-178 85-158 (200)
433 PRK14136 recX recombination re 58.3 1.1E+02 0.0025 25.8 12.3 73 74-152 194-266 (309)
434 PRK14956 DNA polymerase III su 57.7 1.6E+02 0.0034 27.1 12.1 100 145-268 184-283 (484)
435 KOG2066 Vacuolar assembly/sort 57.5 1.9E+02 0.0041 28.1 27.0 125 21-154 392-532 (846)
436 PF14669 Asp_Glu_race_2: Putat 57.4 91 0.002 24.4 14.2 55 305-359 137-205 (233)
437 KOG0991 Replication factor C, 56.8 1.1E+02 0.0023 25.0 10.8 67 175-243 204-282 (333)
438 KOG4279 Serine/threonine prote 56.5 2E+02 0.0043 28.0 11.6 185 180-369 180-400 (1226)
439 KOG2908 26S proteasome regulat 56.4 1.3E+02 0.0028 25.9 11.0 55 137-191 85-143 (380)
440 COG5108 RPO41 Mitochondrial DN 56.4 70 0.0015 30.2 7.7 91 238-328 33-131 (1117)
441 PF09477 Type_III_YscG: Bacter 56.0 66 0.0014 22.3 8.5 76 72-154 21-96 (116)
442 PF13762 MNE1: Mitochondrial s 55.9 81 0.0018 23.3 11.4 82 165-246 41-128 (145)
443 COG5187 RPN7 26S proteasome re 55.8 1.2E+02 0.0027 25.4 8.6 118 250-367 55-187 (412)
444 KOG0545 Aryl-hydrocarbon recep 55.5 93 0.002 25.5 7.4 90 240-329 185-293 (329)
445 cd07153 Fur_like Ferric uptake 55.4 36 0.00078 23.8 5.0 46 306-351 6-51 (116)
446 KOG1498 26S proteasome regulat 54.5 1.5E+02 0.0033 26.1 12.9 194 34-228 25-242 (439)
447 KOG4567 GTPase-activating prot 54.1 1.4E+02 0.003 25.4 10.1 39 254-292 264-302 (370)
448 PF10366 Vps39_1: Vacuolar sor 53.8 72 0.0016 22.1 6.7 26 95-120 42-67 (108)
449 COG5108 RPO41 Mitochondrial DN 53.8 1.6E+02 0.0034 28.2 9.4 74 203-279 33-114 (1117)
450 PRK09462 fur ferric uptake reg 53.7 86 0.0019 23.2 6.9 34 316-349 33-66 (148)
451 KOG4567 GTPase-activating prot 53.7 78 0.0017 26.8 6.9 71 147-223 263-343 (370)
452 PF11663 Toxin_YhaV: Toxin wit 53.6 18 0.00038 26.2 2.9 31 175-207 107-137 (140)
453 PF10475 DUF2450: Protein of u 53.4 1.4E+02 0.003 25.3 9.9 113 169-292 104-221 (291)
454 PF01475 FUR: Ferric uptake re 52.3 32 0.00069 24.3 4.3 48 304-351 11-58 (120)
455 COG4259 Uncharacterized protei 52.3 73 0.0016 21.7 6.1 29 275-303 79-108 (121)
456 KOG4642 Chaperone-dependent E3 52.2 1.3E+02 0.0028 24.6 10.3 118 171-292 18-141 (284)
457 PRK07003 DNA polymerase III su 51.8 2.5E+02 0.0054 27.7 11.9 44 145-190 182-225 (830)
458 PRK14963 DNA polymerase III su 51.6 2E+02 0.0044 26.7 10.5 86 144-232 178-275 (504)
459 COG2178 Predicted RNA-binding 51.3 1.2E+02 0.0025 23.8 8.1 27 235-261 31-57 (204)
460 KOG4521 Nuclear pore complex, 51.1 3E+02 0.0065 28.4 14.8 122 235-357 985-1124(1480)
461 KOG2581 26S proteasome regulat 50.6 1.8E+02 0.004 25.8 14.5 133 19-156 122-276 (493)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 50.4 92 0.002 22.3 9.1 23 165-187 101-123 (126)
463 smart00386 HAT HAT (Half-A-TPR 50.3 31 0.00067 16.8 3.7 29 314-343 1-29 (33)
464 KOG4814 Uncharacterized conser 50.0 94 0.002 29.3 7.5 85 279-364 365-457 (872)
465 PF09477 Type_III_YscG: Bacter 49.9 85 0.0018 21.8 8.8 79 178-263 21-99 (116)
466 KOG1586 Protein required for f 49.1 1.5E+02 0.0031 24.2 16.4 17 67-83 24-40 (288)
467 PF06957 COPI_C: Coatomer (COP 48.5 1E+02 0.0022 27.6 7.4 25 239-263 306-330 (422)
468 KOG0292 Vesicle coat complex C 48.1 1.8E+02 0.0039 28.8 9.2 129 103-262 654-782 (1202)
469 COG4003 Uncharacterized protei 47.6 24 0.00053 22.7 2.6 29 26-54 36-64 (98)
470 KOG2471 TPR repeat-containing 46.9 2.1E+02 0.0045 26.3 8.8 109 100-210 248-381 (696)
471 PRK09857 putative transposase; 46.8 1.8E+02 0.0039 24.6 8.7 66 201-267 209-274 (292)
472 PRK11639 zinc uptake transcrip 46.5 1.3E+02 0.0028 22.9 7.4 57 225-282 18-74 (169)
473 KOG0403 Neoplastic transformat 46.4 2.3E+02 0.0049 25.7 20.5 61 271-331 512-574 (645)
474 PF11768 DUF3312: Protein of u 46.4 2.5E+02 0.0054 26.1 10.3 124 27-158 414-537 (545)
475 PF13934 ELYS: Nuclear pore co 46.2 1.6E+02 0.0034 23.8 15.1 169 37-220 26-198 (226)
476 COG2178 Predicted RNA-binding 46.0 1.1E+02 0.0024 23.9 6.3 17 102-118 39-55 (204)
477 KOG1839 Uncharacterized protei 45.9 3.3E+02 0.0071 28.4 10.9 154 171-324 940-1123(1236)
478 PF12926 MOZART2: Mitotic-spin 45.6 87 0.0019 20.7 8.0 43 184-226 29-71 (88)
479 PRK14951 DNA polymerase III su 45.6 2.8E+02 0.0061 26.6 12.1 85 144-231 186-283 (618)
480 PRK06645 DNA polymerase III su 45.6 2.6E+02 0.0055 26.1 10.6 86 144-232 190-291 (507)
481 KOG2582 COP9 signalosome, subu 45.5 2.1E+02 0.0045 25.0 19.1 57 310-366 287-347 (422)
482 KOG2297 Predicted translation 45.2 1.9E+02 0.0042 24.6 14.2 66 280-354 267-340 (412)
483 PRK14958 DNA polymerase III su 45.0 2.6E+02 0.0057 26.0 11.6 86 144-232 181-279 (509)
484 PF04762 IKI3: IKI3 family; I 44.7 3.6E+02 0.0078 27.5 17.2 113 233-361 812-927 (928)
485 PRK00117 recX recombination re 44.5 1.3E+02 0.0029 22.4 9.8 46 78-125 47-92 (157)
486 PRK08691 DNA polymerase III su 44.0 3.2E+02 0.0068 26.7 13.0 47 143-191 180-226 (709)
487 cd07153 Fur_like Ferric uptake 43.4 69 0.0015 22.3 4.9 45 239-283 6-50 (116)
488 KOG0686 COP9 signalosome, subu 43.3 2.4E+02 0.0052 25.1 14.1 23 201-223 153-175 (466)
489 PF05944 Phage_term_smal: Phag 42.6 1.3E+02 0.0028 21.9 7.4 25 98-122 54-78 (132)
490 PRK09462 fur ferric uptake reg 42.6 1.4E+02 0.003 22.1 7.3 59 224-283 8-67 (148)
491 PF02184 HAT: HAT (Half-A-TPR) 42.4 50 0.0011 17.0 3.4 24 315-340 2-25 (32)
492 KOG0686 COP9 signalosome, subu 42.4 2.5E+02 0.0054 25.0 14.6 25 59-83 152-176 (466)
493 COG4976 Predicted methyltransf 42.3 63 0.0014 26.1 4.6 54 311-365 6-59 (287)
494 PF09868 DUF2095: Uncharacteri 41.9 72 0.0016 22.3 4.3 25 64-88 68-92 (128)
495 KOG2396 HAT (Half-A-TPR) repea 41.6 2.8E+02 0.0062 25.5 17.9 236 40-292 301-554 (568)
496 PF07064 RIC1: RIC1; InterPro 41.5 2E+02 0.0044 23.8 14.5 162 201-372 85-257 (258)
497 PF09454 Vps23_core: Vps23 cor 40.9 87 0.0019 19.4 4.3 51 297-348 5-55 (65)
498 PF08870 DUF1832: Domain of un 40.9 81 0.0018 22.1 4.7 17 145-161 7-23 (113)
499 KOG0991 Replication factor C, 40.5 2E+02 0.0044 23.5 15.7 77 254-333 180-271 (333)
500 PRK06645 DNA polymerase III su 40.5 3.1E+02 0.0067 25.5 9.9 23 269-291 399-421 (507)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-59 Score=438.02 Aligned_cols=351 Identities=15% Similarity=0.214 Sum_probs=341.9
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
|+..+|+.++.+|++.|+++.|.++|+.|.+.| +.||..+|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 899999999999999999999999999999887 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh-cCCCcCHHHHHHHHHHHHHcC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK-LGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~ 177 (377)
+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999753 488999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 042154 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 334 (377)
+|.+.|+.||..+|+.|+.+|++.|++++|.++|+ ..++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999 678999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeee
Q 042154 335 QAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYN 370 (377)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 370 (377)
..||+.++.+|++.|++++|.+++++|.+.|+.+..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999986643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-57 Score=426.11 Aligned_cols=349 Identities=18% Similarity=0.258 Sum_probs=327.2
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.+++...++.++.+|.+.|.+++|+.+|+.|. .|+..+|+.++.+|++.|+++.|.++++.|.+.+..|+..+|+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34555556666666666666666666666664 2788999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK 176 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 176 (377)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.+|.+|++.
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999776 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHH--CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 177 GSLDSANTLLYEMEK--KGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999986 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 042154 255 LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331 (377)
Q Consensus 255 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 331 (377)
+|++|.+.|+.||..+|+.++.+|++.|++++|.++++ +.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999 889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeeec
Q 042154 332 LVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNL 371 (377)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 371 (377)
.||..+|+.||.+|++.|++++|.++|++|.+.|..+...
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999998766543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-52 Score=387.37 Aligned_cols=336 Identities=19% Similarity=0.288 Sum_probs=193.7
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
||..+|+.++.+|++.|++++|+++|++|.+.+ +.|+..+|..++.+|++.|+.+.+.+++..+.+.+..++..+++.|
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 344455555555555555555555555554433 3333333333333333333333333333333333444455556667
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccc
Confidence 7777777777777777777754 46677777777777777777777777777554 777777777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.++|++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777766666666666666666655555555555555532 3445555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----hcCCCCCHHHHHHHHHHHHhcCChHHHHHH------------
Q 042154 259 MRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN----KSGCGMNKAIFKLLVPFVCEKGDLDFAFNL------------ 322 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~------------ 322 (377)
|.+.|+.||..||+.++.+|++.|..++|.++|+ ..++.|+..+|+.++++|++.|++++|.++
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 5555555555555555555555555555555555 234445555555555555555555555444
Q ss_pred --------------------HHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 323 --------------------CKRTFSERCLV-DQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 323 --------------------~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
++++.+. .| +..+|..|+..|++.|++++|.++++.|.+.|.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4444332 22 344666666667777777777777777777665
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.3e-52 Score=384.96 Aligned_cols=341 Identities=16% Similarity=0.217 Sum_probs=256.8
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
..+..+|+.+|.++.+.|++++|+++|++|...+++.|+..+|+.++.+|++.++++.+.+++..+.+.|..|+..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34555677777777777777777777777766554667777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCC-----------------
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIE----------------- 160 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 160 (377)
++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+. |+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCC
Confidence 77777777777777777777754 56777777777777777777777777777543 443
Q ss_pred ------------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 042154 161 ------------------PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWE 222 (377)
Q Consensus 161 ------------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (377)
||..+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444556677777777777777777777753 477788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHH
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAI 302 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (377)
+|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+.+|++.|++++|.++|+... .||..+
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t 393 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLIS 393 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeee
Confidence 8888888888888888888888888888888888888888888888888888888888888888888887443 467788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc-CCcee
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT-NSYCR 368 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 368 (377)
|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 8888888888888888888888888888888888888888888888888888888888865 34443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-51 Score=390.26 Aligned_cols=338 Identities=16% Similarity=0.186 Sum_probs=274.2
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
.||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+.+.+.+++..+.+.|..++..+|+.
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 4688899999999999999999999999998877 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999975 67889999999999999999999999999766 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888888764 455667777777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHH-----------------------------------HHHHhcCCHHHHHHHHHhcCCCCCHHH
Q 042154 258 EMRSKEINPDVFTFYALI-----------------------------------KGFVNEGNLEEAKRWYNKSGCGMNKAI 302 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~-----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (377)
+|.. ++.||..||+.++ .+|++.|++++|.++|+.. .||..+
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s 556 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVS 556 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhh
Confidence 7654 3556555554444 4445555555555555533 567777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc-cCCcee
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK-TNSYCR 368 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 368 (377)
|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|..+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 777777777777777777777777777777777777777777777777777777777776 445433
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-51 Score=388.52 Aligned_cols=299 Identities=19% Similarity=0.259 Sum_probs=231.1
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
+||..+|+.+|.+|++.|++++|+++|+.|...| +.||..||+.++++|+..+++..+.+++..+.+.|..++..+++.
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 4788999999999999999999999999998776 889999998888888888888888888888888888888888888
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
++.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|... |+.||..||+.++.+|++.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcC
Confidence 88888888988888888888875 57788888888888888888888888888665 88888888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888888888888777877777777777777777777777776643 566667777777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042154 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRT 326 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 326 (377)
+|.+.|+.||..||+.++.+|++.|++++|.++++ +.|+.|+..+|+.|+.+|++.|++++|.++|++|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 66666666666666666666666666666666555 5555555555555555555555555555555544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.1e-24 Score=211.79 Aligned_cols=332 Identities=12% Similarity=0.038 Sum_probs=228.0
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
.+...+..++..+...|++++|+..++.+.+.. +.+...|..+...+...|++++|.+.++++.+..+. +...+..+
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 344555666666666666666666666665443 455566666777777777777777777766654322 23334456
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+... .+.+...+..+...+...|+
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCC
Confidence 666777777777777777766543 344666667777777777777777777776543 23455566667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 777777777777653 333566667777777777777777777777654 35666777777777778888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 042154 259 MRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 336 (377)
+.+.. +.+...+..+...+...|+ .+|+.+++ .....| +..++..+...+...|++++|.++++++++.++. ++.
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~ 872 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAA 872 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChH
Confidence 77753 4466677777777777777 66777777 222233 4456667777788888888888888888887654 777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 337 PLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 337 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
++..+..++.+.|+.++|.+++++|.
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888888888888888888775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.5e-24 Score=209.25 Aligned_cols=340 Identities=10% Similarity=0.011 Sum_probs=226.9
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.|+++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++....+. +...+.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 537 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAIL 537 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHH
Confidence 34566777777778888888888888887776654 445556667777777777777777777777665432 334444
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK 176 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 176 (377)
.+...+.+.|+.++|...++++...+ +.+...+..++..+.+.|++++|..+++.+.. ..+.+..+|..+..++...
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHc
Confidence 56777777777777777777776554 34555666677777777777777777777654 2344556677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
|++++|...++.+.+.. +.+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776653 2355566677777777777777777777776654 334566666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 042154 257 GEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 335 (377)
+.+.+.+ +.+...+..+...+...|++++|.+.++ .....|+..++..++.++.+.|++++|.+.++++.+.... +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~ 770 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DA 770 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 7776653 3455566666667777777777777777 3333454455666666677777777777777776665332 55
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 336 APLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
..+..+...|.+.|++++|.+.++++.+..+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 5666666677777777777777777665543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=5e-24 Score=187.07 Aligned_cols=302 Identities=13% Similarity=0.079 Sum_probs=231.9
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc---cchhHHHHHHHHc
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK---EGFTARLIALYGK 104 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 104 (377)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..+. ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567788999999999998765 55677888888888899999999999988876532221 1345567888888
Q ss_pred cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----HHHHHHHHHHHHHcCCHH
Q 042154 105 AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----LVSYNTIIKAFVDKGSLD 180 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~ 180 (377)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+. +..+. ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999988754 456778888888999999999999999888654 22221 124556677778889999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042154 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMR 260 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (377)
+|.+.++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999888763 235667777888888899999999999988876422224567788888889999999999999888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCChh
Q 042154 261 SKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCE---KGDLDFAFNLCKRTFSERCLVDQA 336 (377)
Q Consensus 261 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 336 (377)
+. .|+...+..++..+.+.|++++|..+++ .....|+...+..++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 75 4566666788888888999999999888 44557888888877776664 458888999999888877777665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=178.38 Aligned_cols=301 Identities=12% Similarity=0.061 Sum_probs=246.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCcc---HHHHHHHHHHHH
Q 042154 62 GTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQT---VLSFNALLGACV 138 (377)
Q Consensus 62 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 138 (377)
.....+...|++++|++.|+++.+..+ .+...+..+...+...|++++|..+++.+...+..++ ...+..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 334456778999999999999998753 3445566799999999999999999999987542221 356788899999
Q ss_pred hCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHcCCCH
Q 042154 139 NSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD----LITFNTLLLGFYSNGRF 214 (377)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 214 (377)
+.|++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999753 244667899999999999999999999999988654332 22456677888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-h
Q 042154 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-K 293 (377)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~ 293 (377)
++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++ .
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999765 345667888889999999999999999999976322224678889999999999999999999 3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHhhccCCcee
Q 042154 294 SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK---ELRVEEAKELVELGKTNSYCR 368 (377)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 368 (377)
....|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.++.+
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 444677777788999999999999999999999885 6788888888887765 568999999999998766543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=4.6e-21 Score=176.56 Aligned_cols=337 Identities=9% Similarity=-0.033 Sum_probs=271.6
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
+..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|++.++++....+.. ...+..+.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHH
Confidence 34456677788889999999999999998765 5556677778888888999999999999999875444 34445688
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCC
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGS 178 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 178 (377)
..+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+... .|+ ...+..+ ..+...|+
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHH-HHHHHcCC
Confidence 99999999999999999998864 456778888999999999999999999987643 333 3333333 34788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKK----ALE 254 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 254 (377)
+++|...++.+.+....++...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999998876544455556666788999999999999999999875 4467788889999999999986 899
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 042154 255 LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332 (377)
Q Consensus 255 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 332 (377)
.|++..+.. +.+...+..+...+...|++++|...++ .....| +...+..+..++.+.|++++|++.++++...+..
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999998863 3356788999999999999999999999 333445 4567778889999999999999999999886432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 333 VDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
+...+..+..++...|+.++|.+.++++.+..+.
T Consensus 351 -~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 351 -TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred -chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 2234444677899999999999999998877554
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.7e-20 Score=170.29 Aligned_cols=338 Identities=12% Similarity=0.058 Sum_probs=238.8
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCC---------
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDI--------- 89 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 89 (377)
|++..|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|++++|+..+......+..
T Consensus 158 p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 158 PDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 455667777777777777777777777776654 445666777777777777777776544332211000
Q ss_pred --------------------CccchhHHH------------------------------HHHH------HccCCHHHHHH
Q 042154 90 --------------------SKEGFTARL------------------------------IALY------GKAAMFENARK 113 (377)
Q Consensus 90 --------------------~~~~~~~~l------------------------------~~~~------~~~~~~~~A~~ 113 (377)
........+ +... ...+++++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 000000000 0000 11246777777
Q ss_pred HHHhcCCCC--CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 114 VFDEMPGRN--CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 114 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
.|++..+.+ .+.....|..+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...|+++.
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777776543 1234556777788888899999999999988743 454 4578888888899999999999999988
Q ss_pred HCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 042154 191 KKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT 270 (377)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 270 (377)
+... .+..++..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+. .+.+...
T Consensus 393 ~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~ 469 (615)
T TIGR00990 393 KLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDV 469 (615)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHH
Confidence 7643 367788889999999999999999999998875 345677778888899999999999999998875 2335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH-hcCCCCCH-H-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042154 271 FYALIKGFVNEGNLEEAKRWYN-KSGCGMNK-A-------IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLV 341 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (377)
++.+...+...|++++|.+.++ .....|+. . .++..+..+...|++++|.+++++.+..... +...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 8889999999999999999998 33333321 1 1122222334468999999999998886533 44578889
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCC
Q 042154 342 VDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 342 ~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
..++.+.|++++|.+.++++.+..
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999999999999886653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.1e-19 Score=163.75 Aligned_cols=306 Identities=12% Similarity=0.046 Sum_probs=246.4
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|-++..+..++.+....|++++|+..|+++.+.. |.+...+..+...+...|++++|+..++++....+. +...+..
T Consensus 73 p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~ 149 (656)
T PRK15174 73 KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFAL 149 (656)
T ss_pred CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 3456667777788888999999999999998875 667788999999999999999999999999887433 3445557
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+... ...++...+..+..++...|
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g 226 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVG 226 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCC
Confidence 8999999999999999999887654 2233344333 3488899999999999998654 22233445556678889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD----AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (377)
++++|+..++++..... .+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|.
T Consensus 227 ~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 227 KYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998753 367788889999999999985 899999999865 346778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 042154 254 ELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKA-IFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 331 (377)
..+++..+.. +.+...+..+..++...|++++|...++ .....|+.. .+..+..++...|+.++|.+.|+++.+...
T Consensus 305 ~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 305 PLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999863 3345677788999999999999999999 333455543 344456788999999999999999988643
Q ss_pred C
Q 042154 332 L 332 (377)
Q Consensus 332 ~ 332 (377)
.
T Consensus 384 ~ 384 (656)
T PRK15174 384 S 384 (656)
T ss_pred h
Confidence 3
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-20 Score=158.88 Aligned_cols=336 Identities=12% Similarity=0.071 Sum_probs=257.7
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc--------
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK-------- 91 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 91 (377)
-..+|..+.+.+...|+++.|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+..+..-
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 46789999999999999999999999999875 55788899999999999998888888877766432110
Q ss_pred -------------------------cchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCcc-HHHHHHHHHHHHhCCChhH
Q 042154 92 -------------------------EGFTARLIALYGKAAMFENARKVFDEMPGRNCEQT-VLSFNALLGACVNSKKFDE 145 (377)
Q Consensus 92 -------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 145 (377)
...|+.|...+-..|+...|++.|++..+.+ |+ ..+|..|...|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence 0112234455556677777777777776654 33 5567777777777778888
Q ss_pred HHHHHHhchhhcCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 146 VDGLFKDLPHKLGIEPDL-VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 146 a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
|+..|.+.. ...|+. .++..+...|..+|+++.|+..+++..+.... -...|+.|..++-..|++.+|.+.|.+.
T Consensus 271 Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 887777665 345553 46777777778888888888888888876322 3567888888888889999999998888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCH-H
Q 042154 225 VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNK-A 301 (377)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~ 301 (377)
+... +-.....+.|...|...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..++ ...+.|+. .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 8764 23456777888888888999999999888877 3555 3567888888889999999999998 77778865 4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
.|+.+...|-..|+.+.|++.+.+++..++. -.+.++.|...|-.+|++.+|..-++.+.+..+.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 7888888999999999999999888875433 3447788999999999999999999998876653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=4.3e-20 Score=157.37 Aligned_cols=301 Identities=13% Similarity=0.111 Sum_probs=247.3
Q ss_pred hcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHH
Q 042154 33 KENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENAR 112 (377)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 112 (377)
..|+..+|...|.+..+.. +.-+..|+.|.-.+-..|+...|++.|++..+..+..-..++| |...|...+.+++|.
T Consensus 196 a~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN-LGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN-LGNVYKEARIFDRAV 272 (966)
T ss_pred hhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh-HHHHHHHHhcchHHH
Confidence 3555555555555554432 2335567777778888899999999999998887666666664 999999999999999
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 113 KVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
..|.+..... +-...++..+...|..+|+.|-|++.|++.++ ..|+ ...|+.+..++-..|++.+|.+.+.+...
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999987764 34677888888899999999999999999874 4666 45899999999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 042154 192 KGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN-VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDV-F 269 (377)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~ 269 (377)
... ......+.|...|...|.++.|..+|....+-. |. ...++.|...|-+.|++++|+..|++.++ +.|+. .
T Consensus 349 l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 349 LCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred hCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 743 367788999999999999999999999998753 44 46789999999999999999999999998 57774 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 270 TFYALIKGFVNEGNLEEAKRWYN-KSGCGMNK-AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
.|+.+...|-..|+.+.|.+.+. ...+.|.. ..++.|...|-..|+..+|++-|++.++..+. -+..|..++.++-
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq 501 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQ 501 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHH
Confidence 89999999999999999999999 77777754 57899999999999999999999999985433 2345666665543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=3e-18 Score=158.35 Aligned_cols=336 Identities=10% Similarity=0.024 Sum_probs=253.4
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHH
Q 042154 24 IGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYG 103 (377)
Q Consensus 24 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (377)
+......+.+.|++++|+..|++..+. .|+...|..+..++...|++++|++.++...+..+.....++ .+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~-~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN-RRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH
Confidence 456678889999999999999998864 467888999999999999999999999999887654444444 6899999
Q ss_pred ccCCHHHHHHHHHhcCCCCC-----------------------------CccHHHHHHHHH-------------------
Q 042154 104 KAAMFENARKVFDEMPGRNC-----------------------------EQTVLSFNALLG------------------- 135 (377)
Q Consensus 104 ~~~~~~~A~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------- 135 (377)
..|++++|...|......+- +++...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999876544321110 000000000000
Q ss_pred -----------H------HHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 042154 136 -----------A------CVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD 197 (377)
Q Consensus 136 -----------~------~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 197 (377)
. ....+++++|...|++........| ....+..+...+...|++++|+..+++..+... ..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc
Confidence 0 0112568889999988875422334 345788888889999999999999999988632 24
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG 277 (377)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 277 (377)
...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 6688889999999999999999999998865 3467888899999999999999999999998863 3356778888899
Q ss_pred HHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh------HHHHHHHHHhcC
Q 042154 278 FVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAP------LQLVVDRLAKEL 349 (377)
Q Consensus 278 ~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g 349 (377)
+.+.|++++|+..++ .....| +...++.+...+...|++++|++.|++.+......+... ++.....+...|
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999999 333344 567888999999999999999999999988643311111 122222344479
Q ss_pred CHHHHHHHHHhhccCCc
Q 042154 350 RVEEAKELVELGKTNSY 366 (377)
Q Consensus 350 ~~~~A~~~~~~~~~~~~ 366 (377)
++++|.++++++.+.++
T Consensus 523 ~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 523 DFIEAENLCEKALIIDP 539 (615)
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 99999999999877654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=4.5e-18 Score=167.18 Aligned_cols=328 Identities=10% Similarity=0.021 Sum_probs=205.5
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc-c----------hh-
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE-G----------FT- 95 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----------~~- 95 (377)
...+...|++++|+..|++..+.. |.+..++..+...+.+.|++++|+..|++..+..+.... . ++
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 455677899999999999988765 567788889999999999999999999988876443221 1 11
Q ss_pred -HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHH-----
Q 042154 96 -ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNT----- 168 (377)
Q Consensus 96 -~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~----- 168 (377)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 123456778899999999999988765 445677778888899999999999999888653 232 222222
Q ss_pred -------------------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 042154 169 -------------------------------------IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN 211 (377)
Q Consensus 169 -------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (377)
+...+...|++++|++.++++.+.... +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 233455678888899988888876433 566777888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------------------------
Q 042154 212 GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK----------------------------- 262 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------- 262 (377)
|++++|...++++.+... .+...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999988876431 22222222222222233333333332221100
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 263 ----------EINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 263 ----------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
..+.+...+..+...+.+.|++++|++.++ .....| +...+..++..|...|++++|++.++.+.+..
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 012233344455555566666666666666 222222 44555556666666666666666666555432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 331 CLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
.. +..++..+..++...|++++|.++++++.+.
T Consensus 668 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 11 3334445555566666666666666665543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=5.6e-18 Score=166.56 Aligned_cols=339 Identities=13% Similarity=0.067 Sum_probs=247.2
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhH------------HHHHHHHHhcCChHHHHHHHHHhhh
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIY------------TGTVQRLANAKRFRWIEEILEHQKQ 85 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~ 85 (377)
|.++..+..+..++.+.|++++|+..|++..+...-.+....+ ......+.+.|++++|++.++++..
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999988654212221112 1224566788999999999999988
Q ss_pred hcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHH---------------------------------
Q 042154 86 YKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA--------------------------------- 132 (377)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--------------------------------- 132 (377)
..+.. ...+..+...+...|++++|++.|++..+.. +.+...+..
T Consensus 380 ~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 380 VDNTD-SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 75433 3344468899999999999999999987654 222333322
Q ss_pred ---------HHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 042154 133 ---------LLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202 (377)
Q Consensus 133 ---------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (377)
+...+...|++++|+..|++..+. .| +...+..+...+.+.|++++|...++++.+.... +...+.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~ 533 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVY 533 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 223455678899999999888753 44 4557778889999999999999999998875332 333333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHH
Q 042154 203 TLLLGFYSNGRFADAEKIWETMVNM---------------------------------------NVRPNVRSYNARLDGL 243 (377)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~ 243 (377)
.+...+...++.++|...++.+... ..+.+...+..+...+
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3333344444555544444332110 1234555677788889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 042154 244 AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFN 321 (377)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 321 (377)
.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++ .....| +...+..+..++...|++++|.+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999863 3467888999999999999999999999 333444 45567778889999999999999
Q ss_pred HHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 322 LCKRTFSERCLVD-----QAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 322 ~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
++++++....... ...+..+...+...|+.++|.+.|+++..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987643221 24566678889999999999999999864
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.3e-17 Score=157.10 Aligned_cols=343 Identities=11% Similarity=-0.010 Sum_probs=241.0
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|.+...+..+...+...|++++|+.+|+...+.. |.+...+..++..+...|++++|+..++++.+..+.... +..
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~ 121 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLA 121 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHH
Confidence 4455568888889999999999999999987764 556777778888888999999999999998877544334 556
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHH--------------------------
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFK-------------------------- 151 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------------------- 151 (377)
+..++...|+.++|+..++++.+.. |.+...+..+...+...+..+.|+..++
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 8888889999999999999988865 3345555666666666666665554444
Q ss_pred --------------------hchhhcCCCcCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHH
Q 042154 152 --------------------DLPHKLGIEPDLV-SYN----TIIKAFVDKGSLDSANTLLYEMEKKGIR-LDLITFNTLL 205 (377)
Q Consensus 152 --------------------~~~~~~~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 205 (377)
.+.+.....|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+. ....+.
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la 279 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVA 279 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHH
Confidence 2222111122211 111 1123445678888999999988876532 222 222256
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---H
Q 042154 206 LGFYSNGRFADAEKIWETMVNMNVRP---NVRSYNARLDGLAIEKQTKKALELVGEMRSKEI-----------NPD---V 268 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-----------~p~---~ 268 (377)
.+|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... .|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78888899999999998887643111 124455666678888999999999888876521 123 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 269 FTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
..+..+...+...|+.++|++.++ ....+.+...+..+...+...|++++|++.+++++...+. +...+..++..+.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al 438 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 244566777888899999999988 3333446677888888888999999999999988885432 4556667777888
Q ss_pred hcCCHHHHHHHHHhhccCCce
Q 042154 347 KELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 347 ~~g~~~~A~~~~~~~~~~~~~ 367 (377)
+.|++++|..+++++.+..+.
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCC
Confidence 899999999999888765543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=8.4e-17 Score=151.60 Aligned_cols=343 Identities=10% Similarity=-0.001 Sum_probs=253.3
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
..+-++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.+++++.....+.. ....
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN-DDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Confidence 345566677778888889999999999999997533 4566678999999999999999999999988875433 3444
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFV 174 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 174 (377)
..++.++...|++++|...++++.+.. |.+.. +..+...+...|+.++|+..++++.+. .|+ ...+..+..++.
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 478889999999999999999998874 44566 888899999999999999999999764 444 345555666666
Q ss_pred HcCCHHHHHHHH----------------------------------------------HHHHHC-CCCCCHH-hHH----
Q 042154 175 DKGSLDSANTLL----------------------------------------------YEMEKK-GIRLDLI-TFN---- 202 (377)
Q Consensus 175 ~~~~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~-~~~---- 202 (377)
..+..+.|++.+ +.+.+. ...|+.. .+.
T Consensus 162 ~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 162 NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 666655444333 333322 1112211 111
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 042154 203 TLLLGFYSNGRFADAEKIWETMVNMNVR-PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP---DVFTFYALIKGF 278 (377)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~~~~~l~~~~ 278 (377)
..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456778999999999999987632 332 22225778999999999999999987653111 134566677788
Q ss_pred HhcCCHHHHHHHHH-hcCCC-------------CC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042154 279 VNEGNLEEAKRWYN-KSGCG-------------MN---KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLV 341 (377)
Q Consensus 279 ~~~~~~~~a~~~~~-~~~~~-------------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (377)
...|++++|.++++ ..... |+ ...+..+...+...|++++|+++++++....+. +...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 99999999999988 11111 23 234556777889999999999999999887544 67788889
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCcee
Q 042154 342 VDRLAKELRVEEAKELVELGKTNSYCR 368 (377)
Q Consensus 342 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 368 (377)
...+...|++++|++.++++.+..+..
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999998877544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.3e-15 Score=141.47 Aligned_cols=155 Identities=11% Similarity=0.052 Sum_probs=92.1
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH--HHHHHHccC
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR--LIALYGKAA 106 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~ 106 (377)
-...+.|+++.|++.|+++.+.. |-+......++..+...|+.++|+.++++... +.+...+.. ++..+...|
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~---p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS---SMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHcC
Confidence 34456777888888887777654 22211222666666777777777777777661 112222222 355677777
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLL 186 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (377)
++++|.++|+++.+.. |-++..+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|++.+
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 7777777777777665 334555666666777777777777777777543 445444433333333344444466666
Q ss_pred HHHHHC
Q 042154 187 YEMEKK 192 (377)
Q Consensus 187 ~~~~~~ 192 (377)
+++.+.
T Consensus 193 ekll~~ 198 (822)
T PRK14574 193 SEAVRL 198 (822)
T ss_pred HHHHHh
Confidence 666654
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.3e-16 Score=128.32 Aligned_cols=350 Identities=11% Similarity=0.093 Sum_probs=265.8
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
..|-++.++..+|.++|+-...+.|.+++++..... .+.+..+||.+|.+-.-... .+++.+|......|+..++
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 345678899999999999999999999999987665 57888899999886654433 7788899999999999999
Q ss_pred HHHHHHHHccCCHHH----HHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhH-HHHHHHhchhhc---CCC---c-CH
Q 042154 96 ARLIALYGKAAMFEN----ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE-VDGLFKDLPHKL---GIE---P-DL 163 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~---~~~---p-~~ 163 (377)
|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ +..+..++.... .++ | |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998876 45778889999999999999999999999888644 444554443221 222 2 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042154 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKG----IRLD---LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSY 236 (377)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 236 (377)
..|...+..|.+..|.+.|.++..-+.... +.|+ ..-|..+..+.|+....+.-...|+.|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 577888999999999999998877665321 2222 234667788888888999999999999987777899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHHH--------hc
Q 042154 237 NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG-NL--------EE-----AKRWYN--------KS 294 (377)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~--------~~ 294 (377)
..++++..-.|.++-.-++|.++...|.......-..++..+++.. +. .. |..+++ ..
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999998886555555555555555443 11 11 112222 22
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-C---CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeee
Q 042154 295 GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER-C---LVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYN 370 (377)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 370 (377)
.........+.+.-.+.+.|+.++|.+++.-+.+.+ - .|......-+++.-.+......|..+++-|...+.+..+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 344556677777778999999999999999996654 2 223333446677777888999999999999887776544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.4e-14 Score=134.66 Aligned_cols=189 Identities=12% Similarity=-0.016 Sum_probs=84.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcC
Q 042154 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN-----VRPNVRSYNARLDGLAIEK 247 (377)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 247 (377)
+...++..++++.++.+...+.+....+-..+.++|...+++++|..+|+.+.... ..++......|.-+|...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 33444455555555555544443334444445555555555555555555543321 1112222344455555555
Q ss_pred CHHHHHHHHHHHHhCCC-------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHH
Q 042154 248 QTKKALELVGEMRSKEI-------------NPDV-FTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVC 311 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~-------------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~ 311 (377)
++++|..+++.+.+... .||- ..+..++..+...|++.+|++.++ ...-+-|......+...+.
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL 461 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 55555555555544200 0111 112233444445555555555555 2222234445555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 312 EKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 312 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
..|.+.+|.+.++.+....+. +..+....+.++...|++++|..+.+...
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555555555555444433211 33344444455555555555555544443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=2.2e-14 Score=136.03 Aligned_cols=321 Identities=11% Similarity=-0.005 Sum_probs=179.8
Q ss_pred cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh-c-CCCccchhHHHHHHHHccCC---H
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY-K-DISKEGFTARLIALYGKAAM---F 108 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~ 108 (377)
.+...++...++.|-+.. +-+......+.-...+.|+.++|.++++..... + ...+..+...++..|.+.+. .
T Consensus 355 ~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 344555555555554432 334455555555566666666666666665542 1 11122333345555555544 2
Q ss_pred HHHHHH-------------------------HHhcCCCCCCc--cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc
Q 042154 109 ENARKV-------------------------FDEMPGRNCEQ--TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP 161 (377)
Q Consensus 109 ~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 161 (377)
.++..+ +....... ++ +...|..+..++.. ++.++|+..+.+.... .|
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~P 507 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QP 507 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CC
Confidence 222222 11111111 23 45566666665555 5666677766655433 35
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLD 241 (377)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (377)
+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+.+ +.+...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 5443333344445677777777777766543 2333344555666666777777777777766654 222223333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 042154 242 GLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a 319 (377)
.....|++++|...+++..+. .|+...+..+..++.+.|++++|...++ .....| +...+..+..++...|++++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 334457777777777777664 4556666667777777777777777777 333344 444566666667777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 320 FNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
+..+++.++..+. ++..+..+..++...|++++|...++++.+..+.
T Consensus 663 i~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 663 REMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7777777665433 5556666777777777777777777777665543
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=5.8e-18 Score=141.21 Aligned_cols=259 Identities=17% Similarity=0.167 Sum_probs=92.4
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCC-CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRN-CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (377)
.+...+.+.|++++|.+++++..... .+.+...|..+.......++++.|...|+++... + +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence 35666777777777777775443332 1234444555555566677777777777777643 1 1133455555555 57
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN-VRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
.+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777776665442 355556667777777777877777777766432 33566667777777777888888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 042154 255 LVGEMRSKEINP-DVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331 (377)
Q Consensus 255 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 331 (377)
.+++..+. .| |......++..+...|+.+++.++++ ....+.|+..+..+..+|...|+.++|+..|++..+...
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 88887775 34 45667777777777888877777776 222244555667777788888888888888888777543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 332 LVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
. |+.+...+.+++...|+.++|.++.+++.+
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 3 777777788888888888888887776643
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.8e-14 Score=128.48 Aligned_cols=341 Identities=13% Similarity=0.032 Sum_probs=257.8
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.+|.........+.+...|++++|.+++.++.+.. |-+...|.+|...|-..|+.+++...+-.+.-.. +.+..+|.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~ 211 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWK 211 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHH
Confidence 33444555555666677799999999999999886 7788899999999999999999998876655544 34447787
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-H----HHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-L----VSYNTIIK 171 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~ 171 (377)
.+.....+.|+++.|.-+|.+.++.. |++...+-.-...|-+.|+...|..-|.++.+.. +|. . .....+++
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHH
Confidence 89999999999999999999999986 5566666667788999999999999999997642 222 1 23344567
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--------------------
Q 042154 172 AFVDKGSLDSANTLLYEMEKK-GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR-------------------- 230 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------- 230 (377)
.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 778888889999999888762 23446667889999999999999999888877662111
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCC
Q 042154 231 -------PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP--DVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGM 298 (377)
Q Consensus 231 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~ 298 (377)
++... -.++-++.+....+....+...+....+.| +...|.-+..++...|++.+|+.++. .....-
T Consensus 369 ~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 369 EVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred cCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 22222 122233444455555555555555555333 46688899999999999999999999 222223
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 299 NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
+...|-.+..+|...|.+++|.+.|+..+...+. +...-..|...+.+.|+.++|.+.+..+...+
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 5678999999999999999999999999986433 44455678889999999999999999987443
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.4e-14 Score=126.36 Aligned_cols=282 Identities=11% Similarity=0.046 Sum_probs=211.7
Q ss_pred cCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHH--HHHHHHHhCCChhHHH
Q 042154 70 AKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN--ALLGACVNSKKFDEVD 147 (377)
Q Consensus 70 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 147 (377)
.|+++.|.+.+.........|. ..+-.......+.|+++.|...+.++.+.. |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 6999999988877655432222 222233455588999999999999998754 5554333 3366788999999999
Q ss_pred HHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHcCCCHHHHHHH
Q 042154 148 GLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL-------ITFNTLLLGFYSNGRFADAEKI 220 (377)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 220 (377)
..++++.+. .+-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999998753 2334567888889999999999999999999987655322 1333344444445566777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCC
Q 042154 221 WETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGM 298 (377)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~ 298 (377)
++.+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++.+....++.+++.+.++ ....+-
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7776543 2457788888999999999999999999999884 5555322 2334446699999999998 444344
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 299 NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
|+..+..+...+.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666788899999999999999999999988 468888888999999999999999999998754
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.9e-14 Score=125.55 Aligned_cols=296 Identities=7% Similarity=0.009 Sum_probs=224.1
Q ss_pred HHHHHHHhhh--cccHHHHHHHHHhcccCCCCccchhhHHHH-HHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 24 IGSVIRGIYK--ENNLKRLVDKFKKSSDLGRFRTNTGIYTGT-VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 24 ~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
...+..++.. .|++++|.+.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+..+.......-....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3344454443 699999998888765442 223333333 4455789999999999999987543332222223467
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH------HHHHHHHHHHH
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL------VSYNTIIKAFV 174 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~ 174 (377)
.+...|+++.|...++++.+.. |-+...+..+...|.+.|+|++|..++..+.+.....++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999876 5578889999999999999999999999997653332221 13334444444
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
...+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++..
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 555667777777776544 3457888899999999999999999999999885 3555322 3344456699999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 255 LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 255 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
..+...+. .+-|...+..+...|.+.+++++|.+.|+ .....|+...+..+...+.+.|+.++|.+++++....
T Consensus 316 ~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 316 VLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999886 23456678899999999999999999999 6667899999999999999999999999999988653
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.6e-14 Score=126.63 Aligned_cols=289 Identities=11% Similarity=0.004 Sum_probs=192.7
Q ss_pred HhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccH--HHHHHHHHHHHhCCChhH
Q 042154 68 ANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTV--LSFNALLGACVNSKKFDE 145 (377)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 145 (377)
...|+++.|.+.+.+..+..+.+..... .....+...|+.+.|.+.+.+..+.. |+. .........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~l-laA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLI-KAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4578888888888877665433222222 45667777888888888888876543 343 233345777888888888
Q ss_pred HHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH---HcCCCHHHHHHHHH
Q 042154 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF---YSNGRFADAEKIWE 222 (377)
Q Consensus 146 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~ 222 (377)
|...++.+.+. -+-+..+...+...+...|++++|.+.+..+.+.++.+.......-..++ ...+..++..+.+.
T Consensus 172 Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888754 13345577788888888889988888888888876542222211111111 22223333333444
Q ss_pred HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH-hcC
Q 042154 223 TMVNMN---VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT---FYALIKGFVNEGNLEEAKRWYN-KSG 295 (377)
Q Consensus 223 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~-~~~ 295 (377)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++ ...
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 444332 1136778888888889999999999999998885 344331 1111222234577788888887 222
Q ss_pred CCC-CH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 296 CGM-NK--AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 296 ~~~-~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
..| |+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233 33 556688888999999999999999544444578888888999999999999999999988643
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.4e-17 Score=138.95 Aligned_cols=256 Identities=14% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhc-CCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYK-DISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK 142 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (377)
...+.+.|++++|.++++...... .+.+..++..+...+...++++.|.+.++++...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444445555555555553322222 23333444444444445555555555555555443 1133334444444 45555
Q ss_pred hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 042154 143 FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKG-IRLDLITFNTLLLGFYSNGRFADAEKIW 221 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (377)
+++|.+++....++ .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555444332 2333444445555555555555555555544321 2234444555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcC-CCCC
Q 042154 222 ETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSG-CGMN 299 (377)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~-~~~~ 299 (377)
++..+.. +.|......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|..+++ ... .+.|
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 5555443 1134444455555555555555555555544431 2233344455555555555555555555 111 1224
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042154 300 KAIFKLLVPFVCEKGDLDFAFNLCKRT 326 (377)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 326 (377)
+.....+..++...|+.++|.++.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444455555555555555555555444
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=1.2e-14 Score=127.56 Aligned_cols=298 Identities=11% Similarity=0.042 Sum_probs=222.0
Q ss_pred HHHHHHHHhh--hcccHHHHHHHHHhcccCCCCccch-hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 23 FIGSVIRGIY--KENNLKRLVDKFKKSSDLGRFRTNT-GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 23 ~~~~li~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
....+.+++. ..|+++.|.+.+.+..+.. |+. ..+-.........|+.+.|.+++.+..+..+.+...+.-...
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 4455555554 4899999999998876643 443 334455677788999999999999987654333323443468
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHH-HHHHH---HHH
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYN-TIIKA---FVD 175 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~---~~~ 175 (377)
..+...|+++.|...++.+.+.. |-+..++..+...+.+.|++++|.+.+..+.+. +.. +...+. .-..+ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999886 457778899999999999999999999999765 433 333232 22222 233
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCH
Q 042154 176 KGSLDSANTLLYEMEKKGIR---LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS---YNARLDGLAIEKQT 249 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 249 (377)
.+..+.+.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 44444455567666665321 378889999999999999999999999999875 44432 12222233445788
Q ss_pred HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 250 KKALELVGEMRSKEINPDV--FTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 250 ~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
+.+.+.++...+. .+-|+ .....+...+.+.|++++|.+.|+ .....|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999888875 22344 566788999999999999999999 55568999999999999999999999999999
Q ss_pred HHHhc
Q 042154 325 RTFSE 329 (377)
Q Consensus 325 ~~~~~ 329 (377)
+....
T Consensus 395 ~~l~~ 399 (409)
T TIGR00540 395 DSLGL 399 (409)
T ss_pred HHHHH
Confidence 87553
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=1.6e-13 Score=130.38 Aligned_cols=340 Identities=11% Similarity=0.050 Sum_probs=251.4
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhccc-CCCCccchhhHHHHHHHHHhcCC---hHHHHHH--------------
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSD-LGRFRTNTGIYTGTVQRLANAKR---FRWIEEI-------------- 79 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~-------------- 79 (377)
|-+......+.-...++|+.++|.++|+.... .+.-..+......++..+.+.+. ...+..+
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 33556666666677889999999999998876 22223344445577777777655 2222222
Q ss_pred --------HHHhhhh-cC-CC--ccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHH
Q 042154 80 --------LEHQKQY-KD-IS--KEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVD 147 (377)
Q Consensus 80 --------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (377)
.+..... +. +. +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHH
Confidence 2222221 11 12 34455567777776 88999999888877654 66555444555667899999999
Q ss_pred HHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 148 GLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
..|+++.. ..|+...+..+...+.+.|+.++|...++...+... .+...+..+.......|++++|...+++..+.
T Consensus 530 ~~~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 530 AAWQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99998753 255555677778888999999999999999988742 23333444444555679999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHH
Q 042154 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKL 305 (377)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~ 305 (377)
. |+...|..+..++.+.|++++|+..+++..... +.+...+..+..++...|++++|+..++ .....| +...+..
T Consensus 606 ~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 606 A--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5 678889999999999999999999999999863 3356778888889999999999999999 444445 6678889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCcee
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCR 368 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 368 (377)
+..++...|++++|+..+++..+..+. +..+.........+..+++.|.+-+++....++.+
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999999999999999999986432 33556667778888888999999888877666544
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=8.8e-14 Score=114.35 Aligned_cols=323 Identities=15% Similarity=0.199 Sum_probs=239.6
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhc--CChH-HHHHHHHHhhhhcCCCccchhHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANA--KRFR-WIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~-~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
+.+-|.|+.. ..+|....+.-+|+.|.+.+ ++.+...-..|++..+-. .++- .-++.|-.|...+......+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 4455555543 45788899999999998877 666776666666544432 2222 22344555555554433332
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
+.|++.+ -+|+... .+..+|..||.++++-...+.|.++|++.... ..+.+..+||.+|.+-.-..
T Consensus 191 ------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc
Confidence 3455444 4455443 36789999999999999999999999998766 66788899999987654333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-H
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD----AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKK-A 252 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a 252 (377)
+ .+++.+|......||..|||+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +
T Consensus 257 ~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 257 G----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred c----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 3 7888999999999999999999999999998765 56678899999999999999999999999888755 4
Q ss_pred HHHHHHHHhC----CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHH--h-----cCCCCCH---HHHHHHHHHHHhcC
Q 042154 253 LELVGEMRSK----EIN---P-DVFTFYALIKGFVNEGNLEEAKRWYN--K-----SGCGMNK---AIFKLLVPFVCEKG 314 (377)
Q Consensus 253 ~~~~~~~~~~----g~~---p-~~~~~~~l~~~~~~~~~~~~a~~~~~--~-----~~~~~~~---~~~~~l~~~~~~~g 314 (377)
..++.++... .++ | |..-|...+..|.+..+.+-|.++.. + .-+.|+. .-|..+....|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 4555554432 222 2 34567778888889999988888777 1 1123332 24667777888999
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
..+.-...|+.|+-.-.-|+..+...++++....|.++-..++|..++..|.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 9999999999999887888999999999999999999999999988887774
No 34
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=3.4e-13 Score=110.01 Aligned_cols=284 Identities=11% Similarity=0.084 Sum_probs=226.6
Q ss_pred hcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHH
Q 042154 69 NAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDG 148 (377)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (377)
..|+|.+|+++..+..+++..|...+. .-+.+.-..||.+.+-.++.+.-+..-.++...+-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l-~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYL-LAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHH-HHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 379999999999998888766655555 5677788889999999999999886334667778888888999999999999
Q ss_pred HHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHcCCCHHHHHHHH
Q 042154 149 LFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL-------ITFNTLLLGFYSNGRFADAEKIW 221 (377)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 221 (377)
-++++.+. -+..........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|
T Consensus 175 ~v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99888653 2345667888899999999999999999999998875553 45777777777777777766677
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCC
Q 042154 222 ETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMN 299 (377)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~ 299 (377)
+....+ .+-++..-..++.-+.+.|+.++|.++.++..+.+..|+ ... .-.+.+-++.+.-.+..+ ....+-+
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 776643 244566777888889999999999999999998876555 222 224567777777777777 2233334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 300 KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
+..+..|...|.+.+.|.+|...|+...+ ..|+..+|..+.+++.+.|+.++|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 47788999999999999999999998777 57899999999999999999999999999887
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.4e-13 Score=109.18 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=219.9
Q ss_pred cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc-c--hhHHHHHHHHccCCHHH
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE-G--FTARLIALYGKAAMFEN 110 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~ 110 (377)
.+++++|++.|-.|.+.+ +.+.++.-+|.+.+.+.|..+.|+++.+.+......+.. . ..-.|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 677899999999998755 556777788999999999999999999988776322221 1 11257778899999999
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 042154 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----LVSYNTIIKAFVDKGSLDSANTLL 186 (377)
Q Consensus 111 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 186 (377)
|+.+|..+.+.+ .--..+...|+..|-...+|++|+++-+++... +-.+. ...|.-+...+....+++.|..++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999998865 234667888999999999999999999887654 22222 124556666667788999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042154 187 YEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP 266 (377)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p 266 (377)
.+..+.+.+ .+..--.+.+.+...|++.+|.+.++...+.+..--..+...+..+|.+.|+.++....+.++.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 999887433 4445556778889999999999999999988744445677888899999999999999999988863 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHhcCCC
Q 042154 267 DVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVC---EKGDLDFAFNLCKRTFSERCL 332 (377)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~ 332 (377)
....-..+...-......+.|..++. ...-+|+...+..++.... ..|...+-+.+++.|+...++
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 33344444444445566677777777 6667899999888888554 334567777778888765443
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=4.7e-13 Score=109.22 Aligned_cols=300 Identities=11% Similarity=0.081 Sum_probs=237.6
Q ss_pred HHHHHHhhh--cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHH
Q 042154 25 GSVIRGIYK--ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALY 102 (377)
Q Consensus 25 ~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (377)
..+..++.+ .|+|.+|.....+..+.+ +-....|..-+.+.-..|+.+.+..++.++.+....++....-......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 345555554 799999999998877665 2223356666777778999999999999998875556666666788889
Q ss_pred HccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH-------HHHHHHHHHHHH
Q 042154 103 GKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL-------VSYNTIIKAFVD 175 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~ 175 (377)
...|+.+.|..-.+++.+.+ +-.+.......++|.+.|++..+..++.++.+. +.-.+. .+|..+++-...
T Consensus 164 l~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998876 557888999999999999999999999999665 554443 367777776666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
.+..+.-...++..... ..-++..-..++.-+.++|+.++|.++.++..+++..|+ -...-.+.+-++.+.-++.
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHH
Confidence 66666666677666543 344666777889999999999999999999998876555 2223345677888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 042154 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334 (377)
Q Consensus 256 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 334 (377)
.+.-.+. .+-++..+..|...|.+.+.+.+|...|+ .....|+..+|+.+.+++.+.|+..+|.++.++....-..|+
T Consensus 317 ~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 317 AEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7776665 23355788899999999999999999999 788899999999999999999999999999998875544443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1e-12 Score=117.47 Aligned_cols=342 Identities=14% Similarity=0.117 Sum_probs=262.6
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|-.+..|-.|...|-+.|+.++++..+-.+-... |.|...|..+.....+.|+++.|.-.|.++.+..+..-...+ .
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~-e 246 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIY-E 246 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHH-H
Confidence 4567889999999999999999999987776654 667789999999999999999999999999998776666666 4
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHH----HHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHH
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN----ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAF 173 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 173 (377)
-+..|-+.|+...|...|.++.....+.|..-+. .++..+...++-+.|.+.++....+.+-..+...+++++..+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 8889999999999999999998875322333232 345667778888999999988876544455666889999999
Q ss_pred HHcCCHHHHHHHHHHHHHCC---------------------------CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 174 VDKGSLDSANTLLYEMEKKG---------------------------IRLDLITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
.+...++.+......+.... ..++..++ .++-++......+....+.....+
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH
Confidence 99999999998888776611 12233331 233344445555556666666666
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHH
Q 042154 227 MNVR--PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAI 302 (377)
Q Consensus 227 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~ 302 (377)
..+. -+...|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..+|...|..++|.+.++ .....| +...
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 6633 34567888999999999999999999999987444467789999999999999999999999 444455 4445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSE--------RCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
--.|...+.+.|+.++|.+++..+... +..|+........+.|.+.|+.++-..+...++.
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666777899999999999999886532 2445555666677889999999886666655554
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=8.7e-14 Score=120.41 Aligned_cols=283 Identities=14% Similarity=0.067 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCC--CccchhHHHHHHHHccCCHH-HHHH
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDI--SKEGFTARLIALYGKAAMFE-NARK 113 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~A~~ 113 (377)
..+|+..|++..+. +.-+......+.++|...++++++.++|+.+.+..+. ....+|.+.+..+-+.-... -|..
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45666666664332 2333345556666666666666666666666554321 22334444443332111110 1122
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 114 VFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
+.+.. +-++.+|.++.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+....++|.|...|+..+..
T Consensus 413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22221 23456666666666666666666666666552 344 4456666666666666666666666666543
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042154 193 GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272 (377)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 272 (377)
... +-..|.-+.-.|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|+.++++......+ |+..-.
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 111 22233334455666666666666666666554 234444555555566666666666666666554322 333323
Q ss_pred HHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 042154 273 ALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332 (377)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 332 (377)
.-+..+...+++++|+..++ -..+.| +...|..+...|.+.|+.+.|+.-|.-+.+..++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 33444555666666666666 222233 3345555666666666666666666666554433
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-12 Score=108.44 Aligned_cols=316 Identities=11% Similarity=0.060 Sum_probs=225.8
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH--HHHHHHHccCCH
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA--RLIALYGKAAMF 108 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 108 (377)
+.+.|....|++.|......- |-.-..|..|...+. +.+.+..+.. +.+.+..+.. .+..++-...+.
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVV-----GLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHHHH
Confidence 445677777888777765432 333334444433322 2222222211 1122122211 355667777788
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042154 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLY 187 (377)
Q Consensus 109 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (377)
+++.+-.+.+...|++-+...-+....+.-...|+++|+.+|+++.+...... |..+|..++-. +..+-.. ..+.
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skL--s~LA 319 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKL--SYLA 319 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHH--HHHH
Confidence 89998888888888776666666666667788899999999999976522222 45677776543 3322221 1111
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042154 188 EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267 (377)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 267 (377)
.-...--+-.+.|+..+.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|++-++..++-. +-|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 11111011244577788889999999999999999999876 3456789999999999999999999999999863 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 042154 268 VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL 345 (377)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (377)
-..|..|.++|.-.+.+.-|+-+|+ ...++| |...|.+|..+|.+.++.++|++.|++....+-. +...+..|.+.|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 7899999999999999999999999 666666 6779999999999999999999999999987644 667899999999
Q ss_pred HhcCCHHHHHHHHHhhcc
Q 042154 346 AKELRVEEAKELVELGKT 363 (377)
Q Consensus 346 ~~~g~~~~A~~~~~~~~~ 363 (377)
-+.++.++|...+++.++
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999888765
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.1e-12 Score=109.61 Aligned_cols=328 Identities=10% Similarity=0.106 Sum_probs=214.2
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccc-hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN-TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
.+-...+-+.++|++++|++.|.+..+. .|+ +..|+....+|...|+|+++++--.+..+.++.-...++ .-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~-RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALL-RRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHH-HHHHH
Confidence 3445556788999999999999999875 466 788999999999999999999877776665443333333 23334
Q ss_pred HHccCCHHHHH----------------------HHHHh---------cCCCC--CCccHHHHHHHHHHHHh---------
Q 042154 102 YGKAAMFENAR----------------------KVFDE---------MPGRN--CEQTVLSFNALLGACVN--------- 139 (377)
Q Consensus 102 ~~~~~~~~~A~----------------------~~~~~---------~~~~~--~~~~~~~~~~l~~~~~~--------- 139 (377)
+-..|++++|+ +++.+ +.+.+ +-|+.....+..+.+..
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 44444444433 22211 22111 22333333332222211
Q ss_pred ------------------------------------------------------------------CCChhHHHHHHHhc
Q 042154 140 ------------------------------------------------------------------SKKFDEVDGLFKDL 153 (377)
Q Consensus 140 ------------------------------------------------------------------~~~~~~a~~~~~~~ 153 (377)
.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 11111111111111
Q ss_pred hhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 042154 154 PHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 154 ~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (377)
+. ..|. ...|-.+..+|....+.++..+.|....+.+.. ++.+|..-.+.+.-.+++++|..-|++.+... +-+
T Consensus 353 I~---l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~ 427 (606)
T KOG0547|consen 353 IK---LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PEN 427 (606)
T ss_pred Hh---cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhh
Confidence 11 1111 112555556677777888888888888776544 66677777777777778888888888888765 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC-------H--HH
Q 042154 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN-------K--AI 302 (377)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-------~--~~ 302 (377)
...|-.+.-+..+.+++++++..|++..+. ++..+..|+.....+..++++++|.+.|+ ...+.|. . .+
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 455666666667888999999999998876 55567889999999999999999999998 2222332 2 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
...++..-.+ +++..|.++++++++.+++ ....|..|...-.+.|+.++|.++|++..
T Consensus 507 ~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2233332233 8899999999999886554 44578889999999999999999998764
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.7e-13 Score=118.58 Aligned_cols=289 Identities=9% Similarity=-0.038 Sum_probs=217.3
Q ss_pred CChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHHhCCChhHHHH
Q 042154 71 KRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRN--CEQTVLSFNALLGACVNSKKFDEVDG 148 (377)
Q Consensus 71 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (377)
-+..+|+..|++...+ ......+...+..+|...+++++|+++|+.+.+.. ..-+...|.+.+--+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3567888999885554 33444566678999999999999999999987643 112466676665443221 1122
Q ss_pred HH-HhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 149 LF-KDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 149 ~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
.+ +.+.. .-+-.+.+|.++..+|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|+|...|+..+..
T Consensus 408 ~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 22222 12335679999999999999999999999999987432 7788998888889999999999999998864
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHH
Q 042154 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKL 305 (377)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~ 305 (377)
. +.+...|--+...|.+.++++.|+-.|+...+-+ +-+.+....+...+.+.|+.++|+++++ .....| |+-.--.
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 3 1233445556778999999999999999999853 2356777888888999999999999999 444444 4444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeee
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYN 370 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 370 (377)
-+..+...+++++|++.++++.+.-+. +...+..++..|.+.|+.+.|+.-|--|.+.++....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 566788899999999999999885322 4557888899999999999999999888887765544
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=6.1e-13 Score=110.38 Aligned_cols=337 Identities=13% Similarity=0.062 Sum_probs=207.2
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh------
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT------ 95 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 95 (377)
...+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.++......++..-|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~dd 353 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDD 353 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCC
Confidence 34555555677888888888888888764 366555555555566678888888888887765433332211
Q ss_pred --HHHHHHHHccC-----------CHHHHHHHHHhcCCCCCCccHH-------------HHHH--------HHHHHHhCC
Q 042154 96 --ARLIALYGKAA-----------MFENARKVFDEMPGRNCEQTVL-------------SFNA--------LLGACVNSK 141 (377)
Q Consensus 96 --~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~-------------~~~~--------l~~~~~~~~ 141 (377)
..|+.--.+.. +.++++-.--+++.--+.|+-. .+.. -...+.++|
T Consensus 354 p~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 354 PDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 11222211111 1122221112222211222211 0111 123488888
Q ss_pred ChhHHHHHHHhchhhcCCCcCHHH------------------------------HHH-----HHHHHHHcCCHHHHHHHH
Q 042154 142 KFDEVDGLFKDLPHKLGIEPDLVS------------------------------YNT-----IIKAFVDKGSLDSANTLL 186 (377)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~p~~~~------------------------------~~~-----l~~~~~~~~~~~~a~~~~ 186 (377)
+++.|+++++.+.++.+-..+... ||. -.......|++++|.+.+
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 888888888776543111111100 000 001112357888899888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042154 187 YEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP 266 (377)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p 266 (377)
.+.......-....|+ +.-.+-..|++++|++.|-++... +.-+......+...|....+...|++++.+.... ++.
T Consensus 514 keal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 8888764332233333 233456678889998888766532 1235566667778888888888888888777654 556
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042154 267 DVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344 (377)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (377)
|+.....|...|-+.|+-.+|.++.- -.-++-|..+...|..-|....-+++|+.+|++..- +.|+..-|..++..
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 77888888888888888888888766 333445777777777778888888888888887654 67888888776654
Q ss_pred -HHhcCCHHHHHHHHHhhccCCc
Q 042154 345 -LAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 345 -~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
+.+.|++++|.++++...++-+
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCc
Confidence 4568888888888888766544
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.1e-12 Score=118.28 Aligned_cols=341 Identities=13% Similarity=0.054 Sum_probs=241.2
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcc----cCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh---cCCC
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSS----DLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY---KDIS 90 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 90 (377)
|.|...|-.+...+-..+- ..++.+|..+. ..+ -++-++..|.+...+...|+++.|...|...... ...+
T Consensus 411 ~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 5567777777766655443 33366665543 333 2356677888888888899999999988887665 1222
Q ss_pred ccc-------hhHHHHHHHHccCCHHHHHHHHHhcCCCCCCcc-HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC
Q 042154 91 KEG-------FTARLIALYGKAAMFENARKVFDEMPGRNCEQT-VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD 162 (377)
Q Consensus 91 ~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 162 (377)
+.. -|| +..++-..++.+.|.+.|..+.+.. |. +..|..+.......+...+|..+++.... ....+
T Consensus 489 de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~n 563 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSN 563 (1018)
T ss_pred cccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCC
Confidence 221 343 7777777888899999998888764 44 34454454444455778888888888765 44455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHcC------------CCHHHHHHHHHHHHhCCC
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKG-IRLDLITFNTLLLGFYSN------------GRFADAEKIWETMVNMNV 229 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~ 229 (377)
+..++.+...+.+..++..|.+-|....+.- ..+|+.+.-.|.+.|.+. +..++|+++|.+.++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 6667777788888888888888777776542 235777777777765532 35678899999888875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----hcCCCCCHHHHHH
Q 042154 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN----KSGCGMNKAIFKL 305 (377)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~ 305 (377)
+-|...-|-+.-.++..|++.+|..+|.+..+... -...+|..+.++|...|++..|+++|+ .....-+..+.+.
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 45667777888888999999999999999988743 244578889999999999999999999 3444557778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH------------------HHHhcCCHHHHHHHHHhhccCCce
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVD------------------RLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------------~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
|.+++.+.|.+.+|.+.+..+....+.-....||..+- .....+..+.|.++|..+...+..
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999888877654433334443321 112334567788888888877755
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=5.3e-12 Score=100.32 Aligned_cols=286 Identities=12% Similarity=0.064 Sum_probs=214.9
Q ss_pred hcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccH------HHHHHHHHHHHhCCC
Q 042154 69 NAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTV------LSFNALLGACVNSKK 142 (377)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 142 (377)
-..+.++|+++|-+|.+.....-+... +|.+.|.+.|..+.|+++-+.+.+. ||. .+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~l-tLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHL-TLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHH-HHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 356889999999999886443333334 6999999999999999999998875 442 345567778999999
Q ss_pred hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHcCCCHHHHH
Q 042154 143 FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL----ITFNTLLLGFYSNGRFADAE 218 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 218 (377)
+|.|+++|..+.+.. .--......++..|-...+|++|+++-+++.+.+..+.. ..|--+...+....+.+.|.
T Consensus 123 ~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 123 LDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999987632 223446788999999999999999999999887655432 34555666667778999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCC
Q 042154 219 KIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCG 297 (377)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~ 297 (377)
.++.+..+.+. ..+..--.+.+.+...|++++|.+.|+...+.+..--+.+...|..+|...|+.++...++. .....
T Consensus 201 ~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999988752 23344445667888999999999999999998655456778899999999999999999999 44445
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHhhcc
Q 042154 298 MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK---ELRVEEAKELVELGKT 363 (377)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 363 (377)
++...-..+...-....-.+.|...+.+-+.. +|+...+..+++.-.. .|...+-..+++.|+.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 55555555555445555567777776665553 6888999999987764 3445555556666543
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=4e-11 Score=104.01 Aligned_cols=333 Identities=11% Similarity=0.017 Sum_probs=238.0
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
.+|+.-.+.|.+.+.++-|..+|....+. ++.+...|...+..--..|..+....+++++...- +..+.++-..+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 46666677777888888888888887765 36667777777777677788888888888877763 3344455456666
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDS 181 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (377)
+-..||+..|..++....+.. +-+...|-+-+..-..+.+++.|..+|.+.. +..|+...|..-+..-.-.++.++
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHH
Confidence 777788888888888887765 3466778888888888888888888888775 456777777777777777788888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 182 ANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
|.+++++..+. ++.-...|-.+.+.+-+.++.+.|...|..-.+. ++-....|-.+...--+.|++-+|..++++..-
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 88888887776 3334456777777777777777777777655543 333445666666666667777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------------------------------hcCCCCCHHHHHHHHHH
Q 042154 262 KEINPDVFTFYALIKGFVNEGNLEEAKRWYN--------------------------------KSGCGMNKAIFKLLVPF 309 (377)
Q Consensus 262 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------------------------------~~~~~~~~~~~~~l~~~ 309 (377)
.+ +-+...|...++.=.+.|+.+.|..++. -.....|+.+...+...
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 53 3356677777777777777777765554 11123455666667777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
+....++++|.+.|.+.++.+.. ...+|.-+..-+.+.|.-+.-.++++...+..
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 78888888888888888886544 55677778888888888888888888776544
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=4.7e-13 Score=106.40 Aligned_cols=240 Identities=9% Similarity=0.023 Sum_probs=194.6
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (377)
|..--+.+..+|.+.|.+.+|.+.++.-..+ .|-+.||..+-++|.+..+++.|+.++.+-.+. ++-++....-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 3444467889999999999999999877654 677888999999999999999999999988876 344555556677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042154 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLE 285 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 285 (377)
..+-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+|+++++.|+. ++..|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 78888899999999999988765 346667777778888899999999999999999875 7788888998999999999
Q ss_pred HHHHHHH---hcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 286 EAKRWYN---KSGCGMN--KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 286 ~a~~~~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
-++.-|+ ...-.|+ ..+|-.+....+..||+..|.+.|+-.+..+.. ....++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9988888 2222233 346777888888999999999999998887654 677888888888999999999999999
Q ss_pred hccCCceeeecc
Q 042154 361 GKTNSYCRYNLK 372 (377)
Q Consensus 361 ~~~~~~~~~~~~ 372 (377)
+.+..+.-++.+
T Consensus 455 A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 455 AKSVMPDMAEVT 466 (478)
T ss_pred hhhhCccccccc
Confidence 988776655443
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.1e-11 Score=109.11 Aligned_cols=342 Identities=12% Similarity=0.089 Sum_probs=220.2
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCC-CCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLG-RFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
.|++...+-.-.......+++..|+.+|+.+.... ..+||+.+ .+..++.+.|+.+.|+..|.++.+..+ .....+
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~al 236 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSAL 236 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHH
Confidence 34444444444444556788999999998865432 24555533 445666788899999999988888754 222222
Q ss_pred HHHHHHHHc---cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHH
Q 042154 96 ARLIALYGK---AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIK 171 (377)
Q Consensus 96 ~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 171 (377)
-.|...-.. ...+..+..++...-..+ +-++.+.+.|.+.|.-.|+++.+..+...+.......+ -+..|..+.+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 122222222 234555666666655443 35677888888888888998888888887765421111 2346788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 042154 172 AFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK---- 247 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 247 (377)
+|-..|++++|...|.+..+....--...+.-+.+.|.+.|+++.+...|+...+.. +.+..+..++...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 888999999999988888766332223445567788888899999998888888764 344566666666666654
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 042154 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGMNKAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 320 (377)
..++|..++.+..+.- +-|...|..+...+... +...++.++. ..+..+.+...|.+...+...|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 4566777777766652 34566776666665543 3332244433 4444567777888888888888888888
Q ss_pred HHHHHHHhc---CCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 321 NLCKRTFSE---RCLVDQ------APLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 321 ~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
..|+..... ...+|. .+-..+...+-..++++.|.+.|..+.+..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 888887765 122333 123345556666777777777777776543
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.6e-12 Score=106.71 Aligned_cols=278 Identities=12% Similarity=0.075 Sum_probs=202.6
Q ss_pred HHHhcCChHHHHHHHHHhhhhcCCCccchhHHH--HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh
Q 042154 66 RLANAKRFRWIEEILEHQKQYKDISKEGFTARL--IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF 143 (377)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (377)
.+.+.|+++.|++++.-+.+..........+.| +..+-.-.++..|.++-+...... .-+..+...-.+....+|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 345677888888887776655333222222222 222222346777777776665432 12333333333345568899
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (377)
++|...|++.... . ..-......+.-.+-..|++++|++.|-++... +.-+..+...+.+.|-...+..+|++++.+
T Consensus 507 dka~~~ykeal~n-d-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 507 DKAAEFYKEALNN-D-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHcC-c-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999988753 1 111122223334567889999999999887654 233777888899999999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHH
Q 042154 224 MVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAI 302 (377)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~ 302 (377)
.... ++.|+...+-+...|-+.|+-..|...+-+-.+. ++-+..+...|...|....-+++++.+|+ ..-+.|+..-
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 7654 5668889999999999999999999887665554 56678899999999999999999999999 6778999999
Q ss_pred HHHHHH-HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 042154 303 FKLLVP-FVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 303 ~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
|..++. ++.+.|++++|..+|+...+. ++-|.....-|++.+...|-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 998876 556789999999999998875 55688899889998887774
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1e-11 Score=103.28 Aligned_cols=289 Identities=13% Similarity=0.071 Sum_probs=214.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHHhC
Q 042154 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNC--EQTVLSFNALLGACVNS 140 (377)
Q Consensus 63 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 140 (377)
+..++....+.+++.+-.+.....|.+....+-+....+.-...|++.|+.+|+++.+... --|..+|..++-.--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3445566667888888888877777766666666666777788899999999999987641 12566676665332222
Q ss_pred CChh-HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 042154 141 KKFD-EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEK 219 (377)
Q Consensus 141 ~~~~-~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (377)
.+.. -|..+++ + . +-.+.|...+.+.|.-.++.++|...|+...+.+.. ....|+.+..-|....+...|..
T Consensus 313 skLs~LA~~v~~-i-d----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I-D----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHH-h-c----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2211 1222221 1 1 234557788889999999999999999999988544 67789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCC
Q 042154 220 IWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCG 297 (377)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~ 297 (377)
-++..++.. +.|-..|-.+.++|.-.+...=|+-.|++.... -+.|...|.+|..+|.+.++.++|++.|. -..-.
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999876 568899999999999999999999999999885 24478899999999999999999999999 22224
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCChhhHH---HHHHHHHhcCCHHHHHHHHHhh
Q 042154 298 MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE----RCLVDQAPLQ---LVVDRLAKELRVEEAKELVELG 361 (377)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 361 (377)
.+...+..|.+.|-+.++.++|.+.|.+.++. |.. ++.|.. -|..-+.+.+++++|..+....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 46678999999999999999999998887663 322 332222 2444556677777666544443
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.2e-11 Score=100.45 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456666777777777777777777776653 2245666777777777788888888887777654 2345566677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEIN-PDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a 319 (377)
+...|++++|...+++....... .....+..+..++...|++++|.+.++ .....| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 77888888888888887764221 234456667777888888888888888 222233 455677778888888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 320 FNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
...+++..+. ...++..+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888888776 3335566667778888888888888887776543
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.2e-10 Score=97.56 Aligned_cols=323 Identities=12% Similarity=0.124 Sum_probs=218.8
Q ss_pred hhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHH
Q 042154 32 YKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENA 111 (377)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 111 (377)
..++++..|..+|+.+...+ .-+...|-.-+..-.+..++..|..+++++...-+..+.-+| ..+.+=-..|++..|
T Consensus 84 esq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHH
Confidence 34677888999999998765 456667888888888899999999999998887555555555 577777778999999
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 112 RKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
.++|++..+. .|+..+|.+.|+.=.+.+.++.|..+|++.. -+.|++.+|-...+.=.+.|....+..+|+.+.+
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999998886 4999999999999999999999999999886 4568888888777777788888888777777654
Q ss_pred C-CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHH--------------------------------------------H
Q 042154 192 K-GI-RLDLITFNTLLLGFYSNGRFADAEKIWETM--------------------------------------------V 225 (377)
Q Consensus 192 ~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------------------------------------~ 225 (377)
. |- ..+...|.+....=.++..++.|.-+|+-. +
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 3 10 001112222222111222222222222211 1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------------------
Q 042154 226 NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP--------------------------------------- 266 (377)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p--------------------------------------- 266 (377)
..+ +-|-.+|--.++.-...|+.+...++|++.... ++|
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111 123334444444444455555555555555443 233
Q ss_pred -----CHHHHHHHHHHH----HhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 042154 267 -----DVFTFYALIKGF----VNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336 (377)
Q Consensus 267 -----~~~~~~~l~~~~----~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 336 (377)
...||..+--.| .++.++..|.+++. ..|.-|...+|...|..-.+.++++...+++++.++-++. +..
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~ 472 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCY 472 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhH
Confidence 222332222222 24567777777777 7788888888888888888888888888888888886544 566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 337 PLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 337 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
+|......-...|+.+.|..+|+.+++..
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 77777777778888888888888887654
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=5.2e-10 Score=97.31 Aligned_cols=326 Identities=12% Similarity=0.050 Sum_probs=228.5
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhh----hhcCCCccchh---------
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQK----QYKDISKEGFT--------- 95 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~--------- 95 (377)
-+|.+..-++.|..++.+..+. +|.+..+|.+....--..|+.+...+++++.. ..|...+..-+
T Consensus 414 lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3455566677777777777654 46677777776666667777777777765432 22333222222
Q ss_pred ----------------------------HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHH
Q 042154 96 ----------------------------ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVD 147 (377)
Q Consensus 96 ----------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (377)
..-...|.+.+.++-|..+|....+.. +.+...|......=-..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence 222333444444444555555444432 233444444444444445566666
Q ss_pred HHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 148 GLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
.+|++.... ++-....|-...+.+...||+..|..++..+.+.... +...|..-+..-..+..++.|..+|.+....
T Consensus 571 Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 666665542 2223345555566777789999999999988877444 7778888888889999999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHH
Q 042154 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFK 304 (377)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~ 304 (377)
+ |+...|.--+...--.++.++|.+++++.++. -|+ ...|..+.+.+-+.++.+.|.+.|. ...++-....|-
T Consensus 648 s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl 723 (913)
T KOG0495|consen 648 S--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL 723 (913)
T ss_pred C--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH
Confidence 4 67777777666666788999999999998885 455 4578888888999999999999888 334444556788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
.|.+.--+.|.+..|..++++..-.++. +...|-..|+.-.+.|..+.|..++.++.+.-
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888899999999999999888766 78889999999999999999998888777654
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=1.2e-11 Score=112.75 Aligned_cols=263 Identities=12% Similarity=-0.018 Sum_probs=174.0
Q ss_pred cchhhHHHHHHHHHh-----cCChHHHHHHHHHhhhhcCCCccchhHHHHHHHH---------ccCCHHHHHHHHHhcCC
Q 042154 55 TNTGIYTGTVQRLAN-----AKRFRWIEEILEHQKQYKDISKEGFTARLIALYG---------KAAMFENARKVFDEMPG 120 (377)
Q Consensus 55 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~ 120 (377)
.+...|...+++... .+.+++|.+.+++..+..+.. ...+..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344445555544322 234678888888887764433 233333444433 23457899999999888
Q ss_pred CCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 042154 121 RNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199 (377)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (377)
.+ |.+..++..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++.+.... +..
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 76 446778888888888999999999999988754 444 557788888899999999999999999887543 233
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDV-FTFYALIKGF 278 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~ 278 (377)
.+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++... .|+. ...+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333444456668899999999998876542224455677788888999999999999887664 3443 3445555566
Q ss_pred HhcCCHHHHHHHHH----hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 279 VNEGNLEEAKRWYN----KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 279 ~~~~~~~~a~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
...| ++|...++ .....+....+.. ..+.-.|+.+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 46666555 2222333233333 345556666666555 7776653
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.1e-11 Score=100.76 Aligned_cols=199 Identities=13% Similarity=0.037 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 042154 58 GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGAC 137 (377)
Q Consensus 58 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (377)
..+..+...+...|++++|.+.+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555544321 122233345555555555555555555555433 22344445555555
Q ss_pred HhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHH
Q 042154 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADA 217 (377)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (377)
...|++++|...+++.............+..+...+...|++++|...+.+..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 555555565555555543211111223444455555555666666666655554422 1344455555555556666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042154 218 EKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMR 260 (377)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (377)
...+++..+.. +.+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665555441 2334444445555555556666555555544
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=1.9e-11 Score=111.47 Aligned_cols=253 Identities=10% Similarity=0.043 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH---------hCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHH
Q 042154 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACV---------NSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVD 175 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 175 (377)
+++++|...|++..+.. |-+...|..+..++. ..+++++|...+++..+. .| +..++..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l---dP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL---DHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHH
Confidence 45789999999998875 334556666655544 234578999999988753 44 56678888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
.|++++|...++++.+.+.. +...+..+..++...|++++|...+++..+.+.. +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999999988533 5677888999999999999999999999987622 223333445556678999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CC
Q 042154 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNK-AIFKLLVPFVCEKGDLDFAFNLCKRTFSER-CL 332 (377)
Q Consensus 256 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 332 (377)
++++.....+-+...+..+..++...|+.++|...++ .....|+. ...+.+...|...| ++|...++.+.+.. ..
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 9998865322245557778888899999999999999 33334443 34555666777777 47888777776642 12
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceee
Q 042154 333 VDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRY 369 (377)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 369 (377)
+....+ +-..+.-.|+.+.+..+ +++.+.+...+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 222222 44445567777777766 88887765444
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=4.6e-12 Score=100.88 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=194.2
Q ss_pred hhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHH
Q 042154 94 FTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAF 173 (377)
Q Consensus 94 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 173 (377)
+-+.+.++|.+.|-+.+|++-|+.-.+.. |-+.+|..|-..|.+..+++.|+.++.+-.+. .+-|+....-+.+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 34789999999999999999999987764 78889999999999999999999999988753 333444455577888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042154 174 VDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (377)
-..++.++|.++++...+.. +.++.....+...|.-.++++.|++.|+++.+.|+ -+...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 89999999999999998874 33666777777888888999999999999999996 57789999999999999999999
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 254 ELVGEMRSKEINPDV--FTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
..|.+....--.|+. ..|..+.......|++..|.+.|+ .... .-+...++.|.-.-.+.|++++|..+++.+...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999998876444553 568888888889999999999999 3333 345678999988889999999999999998775
Q ss_pred C
Q 042154 330 R 330 (377)
Q Consensus 330 ~ 330 (377)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 4
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=1.7e-10 Score=102.00 Aligned_cols=289 Identities=16% Similarity=0.132 Sum_probs=161.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH-h---
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV-N--- 139 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--- 139 (377)
...+...|++++|++.++.-... ......+.......+.+.|+.++|..+|..+++.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34455667777777766553332 33444555566667777777777777777777665 44444433333332 1
Q ss_pred --CCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH
Q 042154 140 --SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL-DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 140 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (377)
..+.+....+|+++... -|.......+.-.+..-..+ ..+...+..+...|++ .+|+.+-..|....+..-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 12355666666666443 23333222222111111122 2344455555566654 235555555554444444
Q ss_pred HHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 042154 217 AEKIWETMVNM----N----------VRPNVR--SYNARLDGLAIEKQTKKALELVGEMRSKEINPD-VFTFYALIKGFV 279 (377)
Q Consensus 217 a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 279 (377)
..+++...... + -+|+.. ++..+...|...|++++|++++++.++. .|+ +..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 44454444321 0 123332 3344556677778888888888877775 454 456777777777
Q ss_pred hcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH--------HHHHHHHHhcC
Q 042154 280 NEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPL--------QLVVDRLAKEL 349 (377)
Q Consensus 280 ~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g 349 (377)
+.|++.+|.+.++ .....+ |...-+-.+..+.+.|++++|.+++....+.+..|....+ .....+|.+.|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888877 333333 4445555666777788888888887777666543322221 33456777788
Q ss_pred CHHHHHHHHHhhcc
Q 042154 350 RVEEAKELVELGKT 363 (377)
Q Consensus 350 ~~~~A~~~~~~~~~ 363 (377)
++..|++-+..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88777776665544
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=2.1e-11 Score=109.09 Aligned_cols=247 Identities=12% Similarity=0.065 Sum_probs=151.7
Q ss_pred CCCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccch
Q 042154 15 TATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGF 94 (377)
Q Consensus 15 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 94 (377)
+++.|+-.+|..+|.-||..|+.+.|- +|.-|.-.. .+.+...++.++......++.+.+. .|...+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 455666777777777777777777776 676665444 5556666777777766666665554 455566
Q ss_pred hHHHHHHHHccCCHHH---HHHHHHh----cCCCCCCccHHHH--------------HHHHHHHHhCCChhHHHHHHHhc
Q 042154 95 TARLIALYGKAAMFEN---ARKVFDE----MPGRNCEQTVLSF--------------NALLGACVNSKKFDEVDGLFKDL 153 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~---A~~~~~~----~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~ 153 (377)
|..|...|...||+.. +++.+.. ....|+.....-+ ...+....-.|-|+.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6677777777776543 2221111 1222211111101 11222233344455555555444
Q ss_pred hhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 042154 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNV 233 (377)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (377)
.......|.. .+++-+... .....++........-.|++.+|..++.+-.-+|+.+.|..++.+|.+.|.+.+.
T Consensus 166 Pvsa~~~p~~----vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQ----VFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHH----HHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3211111111 123322222 2223333333332212589999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
+-|-.++-+ .++...++.+++-|...|+.|+..|+...+..+..+|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777665 78888899999999999999999999887777777555
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4e-10 Score=96.36 Aligned_cols=281 Identities=9% Similarity=0.023 Sum_probs=172.9
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
+++....-.+-+...+++.+..++++...+.. |+....+..-|..+...|+..+...+=.++.+.-+.....++ ++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~-aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWF-AVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchh-hHH
Confidence 44455555566666777777777777777665 455555555566667777766666666666655444444555 466
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCH
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL 179 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (377)
-.|.-.|...+|.+.|.+....+ +.=...|-.....|.-.+..|+|+..|...-+- ++-....+--+.--|.+.++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccH
Confidence 66666677777777777765443 112446666677777777777777777655321 111111222333456667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 042154 180 DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM----N--VRPNVRSYNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (377)
+.|.+.|.++.... +.|+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 77777777776652 335666666666666667777777777765521 0 0012334666677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHH
Q 042154 254 ELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVP 308 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~ 308 (377)
..+++.+.. .+-+..++.++.-.|...|+++.|.+.|. ...+.|+..+-..++.
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 777777665 23466677777777777777777777777 6666776655555554
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.8e-09 Score=88.71 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=63.6
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh-c-CCCccchh
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY-K-DISKEGFT 95 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~ 95 (377)
.|+...|++.|+.=.+...++.|..+|+...- +.|+..+|-.-.+.--+.|+...+..+++.+... + ......++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 47788888888888888888888888887763 4678878877777777788888888887776653 1 11222333
Q ss_pred HHHHHHHHccCCHHHHHHHHHhc
Q 042154 96 ARLIALYGKAAMFENARKVFDEM 118 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~ 118 (377)
.+....=.++..++.|.-+|.-.
T Consensus 248 vaFA~fEe~qkE~ERar~iykyA 270 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYA 270 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555555443
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=7.1e-13 Score=78.35 Aligned_cols=49 Identities=35% Similarity=0.672 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFV 279 (377)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 279 (377)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.8e-10 Score=95.89 Aligned_cols=265 Identities=9% Similarity=-0.044 Sum_probs=204.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH
Q 042154 95 TARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV 174 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (377)
......-+...+++.+..++++.+.+.. |+....+..-|.++...|+..+-..+=.++.+. .+-.+.+|-++.-.|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHH
Confidence 3345566777889999999999988865 677777877888999999988888777777653 3445668999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
..|+..+|.+.|.+....+.. =...|-.+...|.-.|.-++|...+...-+.= +-....+--+..-|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999988765332 34467888889999999999998887766531 1111222334455778899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hc----CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 255 LVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KS----GC----GMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 255 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~----~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
.|.+.... .+.|+..++.+.-.....+.+.+|..+|+ .. .+ ..-..+++.|..+|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99998875 24467788888777778899999999998 11 11 12445788889999999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 326 TFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
.+....+ +..++.++.-.|...|+++.|.+.|.++.-..+
T Consensus 481 aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 481 ALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9987555 888999999999999999999999988765443
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=8.5e-13 Score=78.01 Aligned_cols=49 Identities=33% Similarity=0.730 Sum_probs=29.1
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244 (377)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (377)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665566666666666655554
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=5.7e-09 Score=92.57 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=204.9
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHH
Q 042154 24 IGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYG 103 (377)
Q Consensus 24 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (377)
.......+...|++++|++.++.-... +......+......+.+.|+.++|..++..+...++ .+..+|..+..+..
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence 334456678899999999999876443 455667778889999999999999999999999864 45556656666662
Q ss_pred cc-----CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh-HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 104 KA-----AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD-EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 104 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
-. .+.+....+|+++...- |...+...+.-.+.....+. .+...+..+..+ |+++ +|+.+-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChh
Confidence 22 35778888999887654 44444433333333322333 344444555555 6543 4555555565555
Q ss_pred CHHHHHHHHHHHHHC----C----------CCCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 042154 178 SLDSANTLLYEMEKK----G----------IRLDL--ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN-VRSYNARL 240 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 240 (377)
+.+-..+++...... + -+|+. .++.-+...|...|++++|+++.++.++.. |+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 555556666555422 1 12333 345667888889999999999999999875 54 67788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCC--CHH----HH--HHHHHH
Q 042154 241 DGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGM--NKA----IF--KLLVPF 309 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~--~~~----~~--~~l~~~ 309 (377)
..+-+.|++.+|.+.++..+.... -|...-+..+..+.+.|+.++|.+++. ..+..| |.. .| .....+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999988743 366777778888899999999999998 333233 221 22 334668
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 042154 310 VCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~ 329 (377)
|.+.|++..|++.|....+.
T Consensus 315 ~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999998877766554
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.3e-09 Score=87.57 Aligned_cols=288 Identities=10% Similarity=-0.005 Sum_probs=197.1
Q ss_pred CChHHHHHHHHHhhhh-cCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCcc-HHHHHHHHHHHHhCCChhHHHH
Q 042154 71 KRFRWIEEILEHQKQY-KDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQT-VLSFNALLGACVNSKKFDEVDG 148 (377)
Q Consensus 71 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 148 (377)
++-..+...+-.+... ..+.+..+...+..++...|+..+|+..|+.....+ |+ ........-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 3333444443333322 355667777788888888888888888888876654 32 2223333334556777777777
Q ss_pred HHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 149 LFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
+...+... ..-....|-.-+.......+++.|+.+-++..+.... +...+-.-...+...|+.++|.--|+..+...
T Consensus 288 L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77666542 1233444555555666777888888888888766432 45556555667788889999988888877654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH-hcCCCCCH-HHHH
Q 042154 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALI-KGFV-NEGNLEEAKRWYN-KSGCGMNK-AIFK 304 (377)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~-~~~~~~~~-~~~~ 304 (377)
+-+...|.-++.+|...|.+.+|.-.-+...+. ++.+..+...+. ..|. ....-++|.++++ .....|+. ...+
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 346788999999999999998887766665543 233455555442 2332 2334578888888 66666755 4567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
.+...+...|..+.++.++++.+. ..||....+.|.+.+...+.+++|.+.|..+.+.++.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 777888889999999999988877 5678888889999999999999999999888877654
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=1.6e-09 Score=95.01 Aligned_cols=241 Identities=17% Similarity=0.132 Sum_probs=176.1
Q ss_pred CCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh----cC-CCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 042154 122 NCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK----LG-IEPDLV-SYNTIIKAFVDKGSLDSANTLLYEMEKK--- 192 (377)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 192 (377)
+.|.-..+...+...|...|+++.|+.+++...+. .| ..|... ..+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33334556666899999999999999999887653 12 134443 3444778899999999999999998742
Q ss_pred --CC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 193 --GI--RLDLITFNTLLLGFYSNGRFADAEKIWETMVNM-----NV-RPNV-RSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 193 --~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
|. +.-..+++.|..+|.+.|++++|...++...+- +. .|.. ..++.+...|+..+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 21 222457788888999999999998888766531 21 1222 3466677888999999999999987654
Q ss_pred C---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCC--CCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 262 K---EINP----DVFTFYALIKGFVNEGNLEEAKRWYN-------KSGC--GMN-KAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 262 ~---g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
. -+.+ -..+++.|...|...|++++|.++++ ..+. .+. ...++.+...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 3 1112 24688999999999999999999999 1122 222 3467788889999999999999987
Q ss_pred HHHhc----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 325 RTFSE----RC-LVD-QAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 325 ~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
+...- |+ .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 76532 32 222 2478899999999999999999988776
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=1.4e-08 Score=88.54 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-hcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042154 272 YALIKGFVNEGNLEEAKRWYN-KSGCGMNKA-IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL 349 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (377)
..+...+-+.|+++.|..+++ ..+..|+.. .|..=.+.+...|++++|...+++..+.+. +|..+-..-.....++.
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcc
Confidence 455666777888888888888 666667654 455556777888888888888888777643 35554445666677788
Q ss_pred CHHHHHHHHHhhccCCc
Q 042154 350 RVEEAKELVELGKTNSY 366 (377)
Q Consensus 350 ~~~~A~~~~~~~~~~~~ 366 (377)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 88888888887777765
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.6e-09 Score=87.35 Aligned_cols=308 Identities=12% Similarity=0.067 Sum_probs=223.1
Q ss_pred CCCCCchHHHHHHHHhhh--cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccc
Q 042154 16 ATATGPKFIGSVIRGIYK--ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEG 93 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 93 (377)
..+|+..+...-+.++++ .++-..|...+-.+.....++.|......+.+.+...|+.++|+..|++....++..-.
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~- 267 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE- 267 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh-
Confidence 334555555555554443 45555555555544444447888999999999999999999999999988765432221
Q ss_pred hhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHH
Q 042154 94 FTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKA 172 (377)
Q Consensus 94 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 172 (377)
-.......+.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++.++. .| +...|-.-...
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~l 343 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRL 343 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHH
Confidence 12234455677889888888877776532 234455555566677888999999999887642 33 33455555678
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHH
Q 042154 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARL-DGLAI-EKQTK 250 (377)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~ 250 (377)
+...+++++|.-.|+...... +-+..+|.-|+..|...|++.+|.-+-+...+. .+.+..+.+.+. ..+.- ..--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 889999999999999998763 347889999999999999999998777655432 123445555442 22222 23357
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 251 KALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 251 ~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+|..+++.-+.. .|+ ....+.+...|...|..+.++.+++ .....||....+.|.+.+...+.+++|+..|..++.
T Consensus 422 KAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 422 KAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 899999888774 666 3567788888999999999999999 666789999999999999999999999999999988
Q ss_pred cCCC
Q 042154 329 ERCL 332 (377)
Q Consensus 329 ~~~~ 332 (377)
.++.
T Consensus 500 ~dP~ 503 (564)
T KOG1174|consen 500 QDPK 503 (564)
T ss_pred cCcc
Confidence 6544
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=7.6e-10 Score=92.73 Aligned_cols=228 Identities=12% Similarity=0.047 Sum_probs=154.6
Q ss_pred HHccCCHHHHHHHHHhcCCCC-CCcc--HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 102 YGKAAMFENARKVFDEMPGRN-CEQT--VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
....+..+.++.-+.++.... ..|+ ...|..+...|...|++++|...|++..+. .+.+...|+.+...+...|+
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCC
Confidence 334567788888888877542 1122 455777888899999999999999988753 23346789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+++|...|+...+.... +..++..+..++...|++++|.+.|+...+.. |+..........+...++.++|...+.+
T Consensus 114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999999886433 56778888888899999999999999998765 4432222222234456789999999977
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHH--HHHHH-hcC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 259 MRSKEINPDVFTFYALIKGFVNEGNLEEA--KRWYN-KSG----CGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a--~~~~~-~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.... ..|+...+ .+.. ...|+...+ .+.+. ... ..| ....|..+...+.+.|++++|+..|++..+.+
T Consensus 191 ~~~~-~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 191 RYEK-LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHhh-CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5543 23332222 2332 234444333 32222 111 112 23578888999999999999999999998865
Q ss_pred CCCChhhHH
Q 042154 331 CLVDQAPLQ 339 (377)
Q Consensus 331 ~~~~~~~~~ 339 (377)
+. |..-+.
T Consensus 267 ~~-~~~e~~ 274 (296)
T PRK11189 267 VY-NFVEHR 274 (296)
T ss_pred Cc-hHHHHH
Confidence 33 444333
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=6.1e-09 Score=87.80 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc-cchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCcc-HHHHHHHHHHH
Q 042154 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISK-EGFTARLIALYGKAAMFENARKVFDEMPGRNCEQT-VLSFNALLGAC 137 (377)
Q Consensus 60 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 137 (377)
+-....-|-+.|++++|++.|.+..... |+ +.+|.....+|...|+|+++.+--.+.++.+ |+ +-++..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 3445567788999999999999998864 34 6788889999999999999998888888765 44 44566666677
Q ss_pred HhCCChhHHH
Q 042154 138 VNSKKFDEVD 147 (377)
Q Consensus 138 ~~~~~~~~a~ 147 (377)
-..|++++|+
T Consensus 194 E~lg~~~eal 203 (606)
T KOG0547|consen 194 EQLGKFDEAL 203 (606)
T ss_pred HhhccHHHHH
Confidence 7777766654
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=2e-09 Score=94.30 Aligned_cols=195 Identities=15% Similarity=0.169 Sum_probs=94.6
Q ss_pred HHHHHHhCCChhHHHHHHHhchhh----cC-CCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-H
Q 042154 133 LLGACVNSKKFDEVDGLFKDLPHK----LG-IEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEK-----KGI-RLDL-I 199 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~-~ 199 (377)
+...|...+++++|..+|+++... .| ..|. ..+++.|..+|.+.|++++|...++.+.+ .|. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444455555555555555544321 11 1122 12444555555555555555555444331 011 1111 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNM---NVRPN----VRSYNARLDGLAIEKQTKKALELVGEMRSK----EI--NP 266 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~--~p 266 (377)
.++.+...+...+++++|..+++...+. -..++ ..+++.+...|...|++++|.+++++.+.. +. .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2344445555555666666555543321 01111 245566666666666666666666655432 11 11
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHH-------hcC-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042154 267 D-VFTFYALIKGFVNEGNLEEAKRWYN-------KSG-CGMNK-AIFKLLVPFVCEKGDLDFAFNLCKRTF 327 (377)
Q Consensus 267 ~-~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 327 (377)
. ...++.+...|.+.+...+|.++|. ..| ..|+. .+|..|...|...|+++.|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 2345556666666666666666555 111 12222 356667777777777777776666554
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=7.3e-09 Score=86.85 Aligned_cols=212 Identities=14% Similarity=0.072 Sum_probs=128.2
Q ss_pred cCChHHHHHHHHHhhhhcCC---CccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHH
Q 042154 70 AKRFRWIEEILEHQKQYKDI---SKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEV 146 (377)
Q Consensus 70 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 146 (377)
.++.+.++.-+.++...... .....+..+...|...|+.++|...|++..+.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45666777777666653221 112334456777778888888888888877765 44577788888888888888888
Q ss_pred HHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 147 DGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 147 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
...|++..+. .|+ ..+|..+..++...|++++|.+.++...+... +..........+...++.++|...|.+..
T Consensus 118 ~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888877642 443 45667777777788888888888888776532 22212222223345567888888886654
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 226 NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK---EI--NP-DVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
... .|+...+ . ......|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|...|+
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 332 2222221 1 222234554443 234444321 11 11 23467777778888888888888888
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=6e-08 Score=84.25 Aligned_cols=196 Identities=12% Similarity=-0.007 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 042154 167 NTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV-RPNV--RSYNARLDGL 243 (377)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~ 243 (377)
..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++...... .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3444555666666666666666665532 2344555566666666666666666666554321 1121 2233455566
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HH-hcCC---CCCHHHHHHHHHHHHh
Q 042154 244 AIEKQTKKALELVGEMRSKEI-NPDVFTF-Y--ALIKGFVNEGNLEEAKRW---YN-KSGC---GMNKAIFKLLVPFVCE 312 (377)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~-~~~~---~~~~~~~~~l~~~~~~ 312 (377)
...|++++|..++++...... .+..... + .++.-+...|....+.++ .. .... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543211 1111111 1 222222333322222222 11 0000 1111111234556667
Q ss_pred cCChHHHHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 313 KGDLDFAFNLCKRTFSERCLV--------DQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
.|+.+.|..+++.+......+ .....-....++...|++++|.+.+..+..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777665532110 111112223345567777777777766554
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-07 Score=83.85 Aligned_cols=349 Identities=11% Similarity=0.045 Sum_probs=220.4
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCC-ccchhHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDIS-KEGFTAR 97 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 97 (377)
-++..|..|.-++...|+++.+.+.|++.... .-...+.|..+...+...|.-..|..+++........| +...+-.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 46778888888888899999999988887543 23455678888888888888888888887765544223 2222311
Q ss_pred HHHH-HHccCCHHHHHHHHHhcCC--CCC--CccHHHHHHHHHHHHhCC-----------ChhHHHHHHHhchhhcCCCc
Q 042154 98 LIAL-YGKAAMFENARKVFDEMPG--RNC--EQTVLSFNALLGACVNSK-----------KFDEVDGLFKDLPHKLGIEP 161 (377)
Q Consensus 98 l~~~-~~~~~~~~~A~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~p 161 (377)
.... +-+.+.+++++.+-.+... .+. ......|..+.-+|...- ...++++.+++..+..+..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2222 2344566666555554433 110 112333333333333211 13456666666655544455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-CCC-----------
Q 042154 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN-MNV----------- 229 (377)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----------- 229 (377)
++..|-.+ -|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+...+ .|.
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 44444333 3455667777777777777665555666676666666666666666655543321 110
Q ss_pred --------------------------------------------------------------------------------
Q 042154 230 -------------------------------------------------------------------------------- 229 (377)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (377)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred ----CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC
Q 042154 230 ----RPN------VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM 298 (377)
Q Consensus 230 ----~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~ 298 (377)
.|+ ...|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|. ...+.|
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 001 111333344555566666666666665543 23344556666667778889999999888 666667
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeeeccC
Q 042154 299 N-KAIFKLLVPFVCEKGDLDFAFN--LCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLKF 373 (377)
Q Consensus 299 ~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 373 (377)
+ +....++..++.+.|+..-|.. ++..+.+.+.. ++..|..+...+.+.|+.+.|.+.|..+.+-.....-++|
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 4 4578899999999999888888 99999998765 8889999999999999999999999988776554444443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.2e-08 Score=77.80 Aligned_cols=197 Identities=10% Similarity=0.037 Sum_probs=111.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALY 102 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (377)
+...|.-.|.+.|++..|..-+++..+.+ |.+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34455555666666666666666666654 4455566666666666666666666666665553 23344445566666
Q ss_pred HccCCHHHHHHHHHhcCCC-CCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHH
Q 042154 103 GKAAMFENARKVFDEMPGR-NCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLD 180 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 180 (377)
|..|.+++|...|++.... .+..-..+|..+.-+..+.|+++.|...|++..+. .|+ ..+...+.....+.|++-
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccch
Confidence 6666666666666665442 12223445555555566666666666666655543 222 234455555556666666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
.|...++.....+. ++..+.-..|..--..|+.+.+.+.=.++..
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666655544 4555555555555556666555554444443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.4e-08 Score=77.50 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL-VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLG 207 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (377)
+...+.-.|...|+...|..-+++.++. .|+. .+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 3444555566666666666666666543 3433 35666666666666666666666666655332 55566666666
Q ss_pred HHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042154 208 FYSNGRFADAEKIWETMVNMN-VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEE 286 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 286 (377)
+|..|++++|...|++....- ...-..+|..+..+..+.|+.+.|...|++.++.. +-...+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 666666666666666665431 11123455555555566666666666666666542 1123445555666666666666
Q ss_pred HHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 287 AKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 287 a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
|..+++ ..+..++..+.-..|+.--..|+.+.+-+.=.++.+
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666 333335555555556666666666655555444443
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.8e-07 Score=81.27 Aligned_cols=306 Identities=9% Similarity=-0.010 Sum_probs=187.4
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccch-hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH-
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNT-GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR- 97 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 97 (377)
.+..|..+...+...|+++.+...+....+.....++. .........+...|++++|.+++++.....+... ..+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHh
Confidence 35567777777777888888877777765543112222 1222334456678999999999999887643322 22221
Q ss_pred --HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH
Q 042154 98 --LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175 (377)
Q Consensus 98 --l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (377)
........+....+.+.+...... .+........+...+...|++++|...+++..+. .+.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 112222345666677766653222 2333445556677889999999999999999764 23345678888899999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 042154 176 KGSLDSANTLLYEMEKKGI-RLDL--ITFNTLLLGFYSNGRFADAEKIWETMVNMNV-RPNVRSY-N--ARLDGLAIEKQ 248 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~ 248 (377)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999887532 2232 3456788899999999999999999864432 1222111 1 22333334443
Q ss_pred HHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH------hc----CCCC-CHHHHHHHHHHHHhc
Q 042154 249 TKKALEL--VGEMRSKEI--NPDVFTFYALIKGFVNEGNLEEAKRWYN------KS----GCGM-NKAIFKLLVPFVCEK 313 (377)
Q Consensus 249 ~~~a~~~--~~~~~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~------~~----~~~~-~~~~~~~l~~~~~~~ 313 (377)
...+.++ +........ ............++...|+.+.|...++ .. +... ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333222 111111110 1112222356667788999999999998 11 1100 111122223356789
Q ss_pred CChHHHHHHHHHHHhc
Q 042154 314 GDLDFAFNLCKRTFSE 329 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~ 329 (377)
|+.++|.+.+.+.+..
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888764
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=2.8e-09 Score=88.11 Aligned_cols=250 Identities=12% Similarity=0.043 Sum_probs=160.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF 143 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (377)
++-+--.|++..++.-.+ ...............+.+++...|+.+.++ .++.... +|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344455788888886655 322222222223335788888899877544 4444433 57777776666655554566
Q ss_pred hHHHHHHHhchhhcCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 042154 144 DEVDGLFKDLPHKLGIE-PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWE 222 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (377)
+.++.-+++.... ... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 83 e~~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 83 ESALEELKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HCHHHHHHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6676666655443 222 23323333335566788999999888643 356677778889999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCC
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAI----EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCG 297 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~ 297 (377)
.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++. .....
T Consensus 156 ~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 998764 34 344445554433 34688999999998765 56788889999999999999999999999 33334
Q ss_pred C-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 042154 298 M-NKAIFKLLVPFVCEKGDL-DFAFNLCKRTFSE 329 (377)
Q Consensus 298 ~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 329 (377)
| ++.+...++.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4 555666777777777877 6677788887764
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2.3e-08 Score=79.23 Aligned_cols=325 Identities=14% Similarity=0.071 Sum_probs=206.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc-chhHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE-GFTARLIAL 101 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 101 (377)
.+++++..+.+..+++.|++++..-.+.. +.+....+.+..+|-...++..|...++++...-+.... .+| -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHH
Confidence 46778888888899999999988777664 447778888888888999999999999988775332221 223 4667
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH--HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA--CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL 179 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (377)
+.+.+.+.+|+++...|... |....-..-+.+ ....+++..+..++++.... -+..+.+.......+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccH
Confidence 77888999999998888763 222222222222 34567888888888877532 2444555555566788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---------------------HHHH
Q 042154 180 DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVR---------------------SYNA 238 (377)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~ 238 (377)
+.|.+-|+...+.+--.....|+..+. ..+.|+++.|++...+++++|++..+. .-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999998887543335556775554 445688999999999999888653210 1122
Q ss_pred HH-------HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHH
Q 042154 239 RL-------DGLAIEKQTKKALELVGEMRSK-EINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVP 308 (377)
Q Consensus 239 l~-------~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~ 308 (377)
++ ..+.+.|+++.|.+.+-+|--+ ....|+.|...+.-.- ..+++....+-+. -.+..| ...||..++-
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLl 318 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLL 318 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence 22 3345677888888877777533 2345667665543322 2334444444344 222233 4567877888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhh
Q 042154 309 FVCEKGDLDFAFNLCKRTFSERC-LVDQAPLQLVVDRLA-KELRVEEAKELVELG 361 (377)
Q Consensus 309 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 361 (377)
.||+..-++.|-.++.+--.... -.++..|+ |++++. ..-..++|.+-++..
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 88888888888887754322211 12333343 344443 344566666655543
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=9.6e-08 Score=75.82 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=127.5
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHH-HHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTG-TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
+......|..+|-...++..|-+.|+++... .|...-|.. -...+-+.+.+..|+++...|....... ......-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~-~~~lqLq 118 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALH-SRVLQLQ 118 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHH-HHHHHHH
Confidence 4445555666666666666666666666432 233333322 2334455666666666665554421111 1111111
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
.......+|+..+..+.+++...| +..+.+.......+.|+++.|.+-|+...+-.|..|-. .|+..+ ++.+.++
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-AYniAL-aHy~~~q 193 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-AYNLAL-AHYSSRQ 193 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-HHHHHH-HHHhhhh
Confidence 112234556666666666665443 34444444444556666666666666665554554432 344433 3445566
Q ss_pred HHHHHHHHHHHHHCCCC-------------CCHH---------------hHHHHHHHHHcCCCHHHHHHHHHHHHhCC-C
Q 042154 179 LDSANTLLYEMEKKGIR-------------LDLI---------------TFNTLLLGFYSNGRFADAEKIWETMVNMN-V 229 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~-------------~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 229 (377)
++.|++...++.+.|+. ||.. .+|.-...+.+.|+++.|.+-+-.|.-+. -
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 66666666666665532 1110 11222223345566666666665554221 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
..|++|...+.-.- ..+++.+..+-+.-+...+ +....||..++-.||++.-++.|-.++.
T Consensus 274 elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 274 ELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 23444444332221 1233444444444444432 1234566666666666666666666665
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=6.9e-07 Score=78.29 Aligned_cols=93 Identities=8% Similarity=0.026 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALY 102 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (377)
.|...+..+.++|++-.....|+.....-.+.-...+|...+......+-.+.++.++++..+..+.. -+..+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~----~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA----REEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH----HHHHHHHH
Confidence 44444555556666666666666555433233334456666666666666666666666665543221 23455566
Q ss_pred HccCCHHHHHHHHHhcC
Q 042154 103 GKAAMFENARKVFDEMP 119 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~ 119 (377)
++.+++++|.+.+....
T Consensus 180 ~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVL 196 (835)
T ss_pred HhccchHHHHHHHHHhc
Confidence 66666666666665554
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=7e-09 Score=85.73 Aligned_cols=247 Identities=14% Similarity=0.094 Sum_probs=160.4
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCC
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAM 107 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (377)
++...-.|++..++.-.+ ..... -..+......+.+++...|+.+.++. ++.... .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccc
Confidence 355666899999997666 32222 13345556677888888998775543 333333 3444444344444444456
Q ss_pred HHHHHHHHHhcCCCCCCc-cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042154 108 FENARKVFDEMPGRNCEQ-TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLL 186 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (377)
-+.+..-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.+
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777776665544332 3333333345577789999999877643 35566777889999999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHH----HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 187 YEMEKKGIRLDLITFNTLLLGF----YSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
+.|.+.+ .|. +...+..++ ...+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....
T Consensus 155 ~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9998752 343 333344433 3345799999999998765 4578889999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 042154 263 EINPDVFTFYALIKGFVNEGNL-EEAKRWYN 292 (377)
Q Consensus 263 g~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 292 (377)
+ +-++.+...++.+....|+. +.+.+++.
T Consensus 231 ~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 231 D-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp --CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 3 33566777788877788877 66667777
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=7.3e-07 Score=77.33 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=123.0
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHcc
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKA 105 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (377)
+=++-+.+.|++++|+....++...+ +.+...+.+-+-++.+.+++++|+.+.+.-... ......+| .-+.+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~f-EKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFF-EKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhH-HHHHHHHHc
Confidence 33466677899999999999998765 667777888888889999999999666543221 11111223 245566678
Q ss_pred CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCC--------------------------
Q 042154 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGI-------------------------- 159 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 159 (377)
+..++|+..++-.-. .+..+...-...+.+.+++++|+++|+.+.+. +.
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 888888888883322 23335555566788888888888888877432 11
Q ss_pred --CcCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCC--------CC-----CCH-HhHHHHHHHHHcCCCHHHHHHH
Q 042154 160 --EPDLVSYNTII---KAFVDKGSLDSANTLLYEMEKKG--------IR-----LDL-ITFNTLLLGFYSNGRFADAEKI 220 (377)
Q Consensus 160 --~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~ 220 (377)
.| ..+|..+. ..+...|++.+|+++++...+.+ .. ... .+-..+.-.+...|+-.+|..+
T Consensus 168 ~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 11 11333332 34466788999999888873211 00 001 1223344556678888888888
Q ss_pred HHHHHhCC
Q 042154 221 WETMVNMN 228 (377)
Q Consensus 221 ~~~~~~~~ 228 (377)
+...++..
T Consensus 247 y~~~i~~~ 254 (652)
T KOG2376|consen 247 YVDIIKRN 254 (652)
T ss_pred HHHHHHhc
Confidence 88777654
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=4.1e-08 Score=79.69 Aligned_cols=53 Identities=4% Similarity=-0.019 Sum_probs=31.9
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQ 83 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 83 (377)
.++.+.|++++|+..|.-+.... .++...+..|.-...-.|.+.+|..+-.+.
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 44556677777777777666544 444555555555555566666666665543
No 85
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.13 E-value=3.9e-09 Score=95.03 Aligned_cols=250 Identities=16% Similarity=0.091 Sum_probs=165.7
Q ss_pred HHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCC
Q 042154 42 DKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGR 121 (377)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 121 (377)
.++-.+...| +.|+..||..+|..||..|+.+.|- +|.-|.....+....+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 3455565666 9999999999999999999999998 9999988888889999999999999999988876
Q ss_pred CCCccHHHHHHHHHHHHhCCChhH---HHHHHHhchhh---cCCCcCHHHHHHHHHHHHH--------------cCCHHH
Q 042154 122 NCEQTVLSFNALLGACVNSKKFDE---VDGLFKDLPHK---LGIEPDLVSYNTIIKAFVD--------------KGSLDS 181 (377)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~--------------~~~~~~ 181 (377)
.|.+.+|..|..+|...||... +.+.+..+... .|+.....-+-..++++-. .|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 4889999999999999999654 33322222221 1222122222222232211 111222
Q ss_pred HHHHHHHHHHCCCCCCHHhHH---HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 182 ANTLLYEMEKKGIRLDLITFN---TLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+++++..+ |....++ ..++-+... ..-..++........-.|+..+|.+++.+-.-.|+.+.|..++.+
T Consensus 158 llkll~~~------Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKV------PVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhC------CcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 22222222 1111111 112222222 222333333333221148889999999998899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCC
Q 042154 259 MRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGD 315 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~ 315 (377)
|.+.|++.+..-|..|+-+ .++..-+..+++ ..|+.|+..|+...+..+.+.|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888877777765 566666665555 88999999998887777777554
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=3.4e-07 Score=74.19 Aligned_cols=301 Identities=11% Similarity=0.020 Sum_probs=175.6
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
.+..-..-+...+...|++..|+..|....+-+ |.+-.++-.-...|...|+...|+.-+....+..+.....-. .-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi-QR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI-QR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH-Hh
Confidence 455556667777888888888888888886543 333334444455777788888888877777665422111111 23
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHH----H------------HHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVL----S------------FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD 162 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 162 (377)
...+.+.|.++.|..=|+.+++.. |+.. + ....+..+...|+...|+.....+++- .+=|
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wd 188 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWD 188 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--Ccch
Confidence 445778888888888888887754 3211 1 122233455567777777777776642 2225
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH---
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR--- 239 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 239 (377)
...|..-..+|...|++..|+.=+....+... .+...+.-+-..+...|+.+.++...++.++.+ ||....-..
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHH
Confidence 55566666777777777777766666655432 244555556666777777777777777777654 554322111
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC-HHHHH
Q 042154 240 ----------LDGLAIEKQTKKALELVGEMRSKEINPDVF---TFYALIKGFVNEGNLEEAKRWYN-KSGCGMN-KAIFK 304 (377)
Q Consensus 240 ----------~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~ 304 (377)
+......+++.++++-.+...+........ .+..+-.++...|++.+|++... ...+.|+ +.++.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 111233455555555555555442111111 22334444555566666666655 4444453 55565
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
--..+|.-...++.|+.-|+.+.+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566666666666666666666654
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=3e-06 Score=74.46 Aligned_cols=72 Identities=6% Similarity=0.058 Sum_probs=41.0
Q ss_pred hhhccccCCCCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 042154 7 LLSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQ 83 (377)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 83 (377)
.+.+.+..-+..-....|...+......+-++-++.+|+...+. ++..-+.-|..++..+++++|.+.+...
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 34444444444444556666666666666666667666666532 2233555566666666666666655544
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-07 Score=79.32 Aligned_cols=331 Identities=13% Similarity=0.086 Sum_probs=202.0
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCC
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAM 107 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (377)
.++.+..|+++.|+..|-...... |+|...|+.-..+++..|++++|.+=-.+..+..+.- ..-|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhccc
Confidence 356677889999999998887776 6788888888888999999888887766666654332 2334467788888889
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCC----------------------------------------------
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSK---------------------------------------------- 141 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------------------- 141 (377)
+++|+..|.+-++.. +.+...+.-+..++....
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999998888876654 233444444444431110
Q ss_pred -----ChhHHHHHHHhch-----hh------cCCCc------------C----------HHHHHHHHHHHHHcCCHHHHH
Q 042154 142 -----KFDEVDGLFKDLP-----HK------LGIEP------------D----------LVSYNTIIKAFVDKGSLDSAN 183 (377)
Q Consensus 142 -----~~~~a~~~~~~~~-----~~------~~~~p------------~----------~~~~~~l~~~~~~~~~~~~a~ 183 (377)
++..+...+.... .. .+..| | ..-...+.++..+..+++.++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0001111100000 00 00011 0 112445666777777888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHH
Q 042154 184 TLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR-------LDGLAIEKQTKKALELV 256 (377)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~ 256 (377)
+.+....... .+..-++....+|...|.+..+...-....+.|- -...-|+.+ ..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888888764 4666677777888888888887777776666552 122233333 33566677888888888
Q ss_pred HHHHhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHH
Q 042154 257 GEMRSKEINPDVFTF-------------------------YALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPF 309 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~ 309 (377)
.+....-..|+..+- ..=...+.+.|++..|.+.+. .....| |...|..-.-+
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 876654333332221 111234556677777777777 222233 55567777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
|.+.|.+..|+.-.+..++.+.. ....|..=..++....++++|.+.|.+..+.++
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77777777777776666664221 333444445555556677777777777776653
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=1.8e-06 Score=84.72 Aligned_cols=304 Identities=11% Similarity=0.014 Sum_probs=188.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhcCCC--------ccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCcc----HHH
Q 042154 62 GTVQRLANAKRFRWIEEILEHQKQYKDIS--------KEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQT----VLS 129 (377)
Q Consensus 62 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 129 (377)
.....+...|+++++..++......-... .......+...+...|++++|...+++....-...+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34445566788888888887765431110 111122234456678999999998887654211111 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhchhhcCC--Cc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CH
Q 042154 130 FNALLGACVNSKKFDEVDGLFKDLPHKLGI--EP--DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK----GIR--L-DL 198 (377)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 198 (377)
.+.+...+...|++++|...+.+......- .+ ...++..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455666677899999999888877532110 11 1234555667788899999999988876542 211 1 22
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--H
Q 042154 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMN--VRP--NVRSYNARLDGLAIEKQTKKALELVGEMRSKE--INPDVF--T 270 (377)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~p~~~--~ 270 (377)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|...+.+..... ...... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455666777899999999888775421 112 23344445667778899999999888875421 111110 0
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHh-cCCC-CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-hhh
Q 042154 271 F--YALIKGFVNEGNLEEAKRWYNK-SGCG-MNK----AIFKLLVPFVCEKGDLDFAFNLCKRTFSE----RCLVD-QAP 337 (377)
Q Consensus 271 ~--~~l~~~~~~~~~~~~a~~~~~~-~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~ 337 (377)
. ...+..+...|+.+.|.+++.. .... ... ..+..+..++...|++++|...+++.... +..++ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 1122344558899999998871 1111 111 12345667888999999999999988764 22211 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 338 LQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 338 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
...+..++.+.|+.++|.+.+.++.+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667788999999999999988886643
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=3.5e-08 Score=85.05 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=146.7
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN 110 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (377)
+.+.|++.+|.-.|+...+.+ |-+...|..|....+..++-..|+..+++..+..+.....+. .|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLm-aLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALM-ALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHH-HHHHHHhhhhhHHH
Confidence 456777777777777777665 666777777777777777777777777777776554444444 57777777777777
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Q 042154 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEM- 189 (377)
Q Consensus 111 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 189 (377)
|.+.++..+....+ ..| +.. -...+++..- +-.++... +....++|-++
T Consensus 372 Al~~L~~Wi~~~p~---y~~--l~~-a~~~~~~~~~-----------~s~~~~~~-------------l~~i~~~fLeaa 421 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK---YVH--LVS-AGENEDFENT-----------KSFLDSSH-------------LAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHhCcc---chh--ccc-cCccccccCC-----------cCCCCHHH-------------HHHHHHHHHHHH
Confidence 77777776543210 000 000 0000000000 00112211 22223333333
Q ss_pred HHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 042154 190 EKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDV- 268 (377)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~- 268 (377)
...+..+|..+...|.-.|.-.|++++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++. .|.-
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yV 498 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYV 498 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCee
Confidence 344434566666667777777777777777777777654 345667777777777777777777777777763 5552
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH------hc------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042154 269 FTFYALIKGFVNEGNLEEAKRWYN------KS------GCGMNKAIFKLLVPFVCEKGDLDFAFN 321 (377)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~------~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 321 (377)
.....|.-+|...|.+++|.+.|- .. ...++...|..|=.++.-.++.+.+.+
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 344445566777777777776555 11 111233456665555555565554433
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.98 E-value=4.2e-07 Score=86.10 Aligned_cols=228 Identities=9% Similarity=0.090 Sum_probs=179.8
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHh
Q 042154 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL---VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLIT 200 (377)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (377)
|-+...|-..|....+.++.++|.++.++.+..-++.-.. ..|.++++.-..-|.-+...++|+++.+. ...-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 4567789999999999999999999999987643332222 36777777777888889999999999986 223457
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD---VFTFYALIKG 277 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~l~~~ 277 (377)
|..|...|.+.+.+++|.++++.|.++= .-....|...+..+.+.++-+.|..++.+..+. -|. .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 8899999999999999999999999752 246688999999999999999999999998875 333 3344555666
Q ss_pred HHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHHH
Q 042154 278 FVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA--PLQLVVDRLAKELRVEE 353 (377)
Q Consensus 278 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 353 (377)
-.+.|+.+.++.+|+ -...+.-...|+..+++-.+.|+.+.+..+|++.+..++.|-.. .|..++..=-+.|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 678999999999999 33334456789999999999999999999999999988765433 56677766666676544
Q ss_pred HHH
Q 042154 354 AKE 356 (377)
Q Consensus 354 A~~ 356 (377)
+..
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 333
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=6e-06 Score=72.66 Aligned_cols=344 Identities=12% Similarity=0.080 Sum_probs=210.6
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|-.+.+.....-.+...|+-++|.+......+.+ .-+...|+.+.-.+....++++|++.|..+...+. .+..++.-
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrD 114 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRD 114 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 3344444444445566777777777777666544 44566777777777777777888888777776643 34444445
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHH----
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAF---- 173 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---- 173 (377)
+...-++.++++.......++.+.. +.....|..+..++.-.|+...|..+++...+.....|+...+......+
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 6666666777777776666666543 23455677777777778888888888888866533456666665554433
Q ss_pred --HHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHH
Q 042154 174 --VDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA-IEKQTK 250 (377)
Q Consensus 174 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 250 (377)
.+.|..+.|.+.+..-... +......-..-...+.+.+++++|..++..++..+ ||...|...+..+. +-.+.-
T Consensus 194 i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhH
Confidence 3456667777666555443 22233334455667888899999999999999875 77777666554443 333434
Q ss_pred HHH-HHHHHHHhC---CCCCC--------HHHHHHHHHHHH----hc-------------CCHHHHHHHHH---------
Q 042154 251 KAL-ELVGEMRSK---EINPD--------VFTFYALIKGFV----NE-------------GNLEEAKRWYN--------- 292 (377)
Q Consensus 251 ~a~-~~~~~~~~~---g~~p~--------~~~~~~l~~~~~----~~-------------~~~~~a~~~~~--------- 292 (377)
++. .+|....+. ...|- ...+...++-|. +. .+..+.- +++
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~ 349 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHS 349 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhh
Confidence 444 666655432 10110 001111111111 11 1111111 222
Q ss_pred hcC------------CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 042154 293 KSG------------CGMNKAIFK--LLVPFVCEKGDLDFAFNLCKRTFSERCLVD-QAPLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 293 ~~~------------~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
..+ -+|....|. .++..+-+.|+++.|...++.++++ .|+ ++.|..=.+.+...|++++|..+
T Consensus 350 L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 350 LSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred cccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 011 145555444 5677888999999999999999885 333 33555556889999999999999
Q ss_pred HHhhccCCceeeec
Q 042154 358 VELGKTNSYCRYNL 371 (377)
Q Consensus 358 ~~~~~~~~~~~~~~ 371 (377)
++++.+.+.+..-+
T Consensus 428 l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 428 LDEAQELDTADRAI 441 (700)
T ss_pred HHHHHhccchhHHH
Confidence 99998877654433
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=2.1e-05 Score=67.99 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 214 FADAEKIWETMVNMN-VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP-DVFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 214 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
.+.....++++...- +.|+ .+|-..+..--+..-+..|..+|.+..+.+..+ ++..+++++..+| .++...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 344444555554322 2333 556667777778888999999999999987777 6778888888765 68899999999
Q ss_pred H-hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 292 N-KSGCGMNK-AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ--APLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 292 ~-~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
+ ....-+|. ..-...+..+...++-..|..+|++.+..++.|+. .+|..+++-=..-|+...+.++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9 32223343 34456778888999999999999999988555443 58999999999999999998887776543
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=6.3e-07 Score=85.01 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=107.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhhhh-cCC---CccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHH
Q 042154 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQY-KDI---SKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN 131 (377)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 131 (377)
+...|-.-+......++.++|.++.+++... +.. ....+|.+++..-...|.-+...++|+++.+.- -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3444555555555566666666666555443 111 112233344444444555555566666655532 1234455
Q ss_pred HHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHc
Q 042154 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR-LDLITFNTLLLGFYS 210 (377)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 210 (377)
.|...|.+...+++|.++|+.|.++++ -....|...+..+.++++-+.|..++.++.+.=.. -........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 555666666666666666666655544 23345555566666666666666666655543111 022233333444445
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042154 211 NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 267 (377)
.|+.+.+..+|+...... +--...|+..++.-.++|+.+.+..+|++....++.|.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 566666666666555443 22334566666666666666666666666665555443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.7e-07 Score=78.94 Aligned_cols=251 Identities=13% Similarity=0.071 Sum_probs=165.7
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHc
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDK 176 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 176 (377)
-..-+.+.|++.+|.-.|+..++.+ |-+..+|..|......+++-..|+..+.++.+ +.|+ ..+.-.|.-.|...
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhh
Confidence 4445667788888888888877766 45677888888888888888888888877763 3554 34666666677777
Q ss_pred CCHHHHHHHHHHHHHCCCCC--------CHHhHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcC
Q 042154 177 GSLDSANTLLYEMEKKGIRL--------DLITFNTLLLGFYSNGRFADAEKIWETMV-NMNVRPNVRSYNARLDGLAIEK 247 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 247 (377)
|.-..|++.++.-....++- +...-.. ..+.....+....++|-++. ..+..+|...+..|.-.|--.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 77778888887776542110 0000000 11112223344555555554 3443467777888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 042154 248 QTKKALELVGEMRSKEINP-DVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKA-IFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
++++|.+.|+..+.. +| |..+||.|...++...+.++|+..|. ...+.|+.+ +...|.-.|...|.+++|.+.|-
T Consensus 445 efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 888888888888875 44 45678888888888888888888888 666777654 44456667888888888888877
Q ss_pred HHHhcC---------CCCChhhHHHHHHHHHhcCCHHHHHH
Q 042154 325 RTFSER---------CLVDQAPLQLVVDRLAKELRVEEAKE 356 (377)
Q Consensus 325 ~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~ 356 (377)
.++... ..++..+|..|=.++.-.++.+.+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 665431 12233466666666666666664443
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=8.9e-06 Score=79.92 Aligned_cols=338 Identities=13% Similarity=0.073 Sum_probs=205.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALY 102 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (377)
.+......+...|++.+|+......... ..-..............|+++.+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3444555666777877777665544221 1111222223344556788888888877663322222223333456666
Q ss_pred HccCCHHHHHHHHHhcCCC----C--CCcc--HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC---HHHHHHHHH
Q 042154 103 GKAAMFENARKVFDEMPGR----N--CEQT--VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD---LVSYNTIIK 171 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~----~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 171 (377)
...|++++|..++...... + -.+. ......+...+...|++++|...+++.......... ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 7889999999888765331 1 0111 122223334566899999999999887542111111 124455667
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHH
Q 042154 172 AFVDKGSLDSANTLLYEMEKK----GI-RLDLITFNTLLLGFYSNGRFADAEKIWETMVN----MNVR--P-NVRSYNAR 239 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l 239 (377)
.+...|++++|...+.+.... |. .....++..+...+...|++++|...+++... .+.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999999888742 11 11123455667788899999999999887664 2211 1 22334455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH---h--cCCCCCHH--HH--HHH
Q 042154 240 LDGLAIEKQTKKALELVGEMRSK--EINPD--VFTFYALIKGFVNEGNLEEAKRWYN---K--SGCGMNKA--IF--KLL 306 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~--g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~---~--~~~~~~~~--~~--~~l 306 (377)
...+...|++++|...+.+.... ...+. ...+..+...+...|+.+.|.+.++ . ........ .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677889999999999887653 11122 3344556667788999999998888 1 11111111 10 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQA----PLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 307 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
+..+...|+.+.|.+.+......... ... .+..+..++...|+.++|...++++...
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFA-NNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23455689999999998776542211 111 1345777889999999999999987654
No 97
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=4.1e-06 Score=70.40 Aligned_cols=201 Identities=9% Similarity=0.055 Sum_probs=85.8
Q ss_pred CCChhHHHHHHHhchhhcCCCcCH-HHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCH--H
Q 042154 140 SKKFDEVDGLFKDLPHKLGIEPDL-VSYNTIIKAFVDKG-SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRF--A 215 (377)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 215 (377)
.++.++|+.++.++++. .|+. .+|+.-..++...| ++++++..++++.+.... +..+|+.....+.+.|+. +
T Consensus 50 ~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 50 DERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 34444555555544432 2222 23333333333344 345555555555544222 333344333333333331 3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 042154 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE---GN----LEEAK 288 (377)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---~~----~~~a~ 288 (377)
++..+++++.+.+ +-+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 4455555555443 234455555555555555555555555555554322 233333333333222 11 12333
Q ss_pred HHHH-hcCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042154 289 RWYN-KSGCGM-NKAIFKLLVPFVCEK----GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347 (377)
Q Consensus 289 ~~~~-~~~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (377)
++.. .....| |...|+.+...+... ++..+|...+.+..+.++. +......|++.|+.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 3332 222222 444555555555442 2334455555555443322 44455556665554
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.3e-05 Score=72.03 Aligned_cols=206 Identities=16% Similarity=0.130 Sum_probs=141.0
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCc-cHHHHH
Q 042154 53 FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQ-TVLSFN 131 (377)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 131 (377)
+.-+...|..+.-++...|+++.+.+.|++...........++ .+...|...|.-..|..+.+.-....-.| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~-~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWY-QLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH-HHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5668889999999999999999999999998877555555555 68889999999999999998866543223 344444
Q ss_pred HHHHHHHh-CCChhHHHHHHHhchhhcCC---CcCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHCCCCC
Q 042154 132 ALLGACVN-SKKFDEVDGLFKDLPHKLGI---EPDLVSYNTIIKAFVD-----------KGSLDSANTLLYEMEKKGIRL 196 (377)
Q Consensus 132 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~ 196 (377)
..-..|.+ .+..++++++-.+.....+- ...+..|..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 44444444 46677777766666542111 1122334444444422 11245788888888876543
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042154 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMR 260 (377)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (377)
|......+.--|...++.+.|.+...+..+.+-..+...|..+...+...+++.+|+.+.+...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3333333445566778999999999999988656788889888888877888877777665543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=3.2e-07 Score=74.65 Aligned_cols=185 Identities=6% Similarity=-0.073 Sum_probs=121.7
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccch---hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccc--h
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNT---GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEG--F 94 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 94 (377)
.+..+..+...+...|++++|...|+.+.... |.+. .++..+..++...|++++|+..++++.+..+..... .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45677778888888999999999998887654 2222 466778888888999999999999888765433221 1
Q ss_pred hHHHHHHHHcc--------CCHHHHHHHHHhcCCCCCCccH-HHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHH
Q 042154 95 TARLIALYGKA--------AMFENARKVFDEMPGRNCEQTV-LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVS 165 (377)
Q Consensus 95 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 165 (377)
+..+..++... |+.++|.+.|+.+.... |+. ..+..+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 22344555443 67788888888877654 332 22222211100 0 0000 0 01
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGI--RLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
...+...+.+.|++++|...++...+... +.....+..+..++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678888999999999888886532 223567788888899999999999888887764
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=9.5e-07 Score=78.56 Aligned_cols=221 Identities=10% Similarity=-0.057 Sum_probs=150.7
Q ss_pred CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 042154 123 CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202 (377)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (377)
.+|-...-..+...+...|-...|..+|+++. .|.-++.+|...|+..+|..+..+-.+. +|++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 34444444556667777788888888887663 3666777788888888888877777663 56777787
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 203 TLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
.+.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 7777777777777787777765432 11112222234677888888777766542 224456777777777778
Q ss_pred CHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 283 NLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 283 ~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
++..|.+.|. .....| +...||.+-.+|.+.|+-.+|...++++.+.+.. +...|...+....+.|.+++|.+.+.+
T Consensus 534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 8888888777 444455 4457888888888888888888888888877633 556666677777778888888887777
Q ss_pred hccC
Q 042154 361 GKTN 364 (377)
Q Consensus 361 ~~~~ 364 (377)
+...
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 6543
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=4.8e-09 Score=55.60 Aligned_cols=32 Identities=34% Similarity=0.607 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042154 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (377)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5e-05 Score=66.40 Aligned_cols=170 Identities=11% Similarity=0.140 Sum_probs=101.5
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|.+...+..=+-++.+.+++++|+.+.+.-.. ...+..-+-.-..+.-+.++.++|+..++-..+ .+..+...
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHH
Confidence 55667788888888999999999976654321 111111111223344467888888888873222 12234445
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCC---------------------------ccHHHHHHH---HHHHHhCCChhHHH
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCE---------------------------QTVLSFNAL---LGACVNSKKFDEVD 147 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~~l---~~~~~~~~~~~~a~ 147 (377)
-...+.+.|++++|..+|+.+.+.+.+ ....+|..+ ...++..|++.+|+
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~ 195 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAI 195 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHH
Confidence 667778888999999988887544320 001133333 33466788999999
Q ss_pred HHHHhchh----hc--C------CCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 042154 148 GLFKDLPH----KL--G------IEPDLV-SYNTIIKAFVDKGSLDSANTLLYEMEKKGI 194 (377)
Q Consensus 148 ~~~~~~~~----~~--~------~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (377)
++++...+ .. + +..+.. .-..+.-.+...|+.++|.+++....+...
T Consensus 196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 99887721 10 0 111111 122334456678999999998888877643
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=8.4e-07 Score=72.17 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=129.2
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 042154 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR-L-DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNV--RSY 236 (377)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 236 (377)
.....+......+...|+++.|...|+++...... | ....+..+..++...|++++|...++++.+....... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567778888899999999999999998876322 1 1246677888999999999999999999876421111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 042154 237 NARLDGLAIE--------KQTKKALELVGEMRSKEINPDV-FTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLV 307 (377)
Q Consensus 237 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~ 307 (377)
..+..++... |+.++|.+.++.+... .|+. ..+..+..... .... . ......+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR---L--------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH---H--------HHHHHHHH
Confidence 4555555544 6788899999998875 3433 22222211111 0000 0 01112456
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 308 PFVCEKGDLDFAFNLCKRTFSERCL-V-DQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 308 ~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
..+.+.|++++|+..++++.+.... | ....+..++.++.+.|++++|..+++.+....
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6788999999999999999886431 2 34678889999999999999999998887654
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=1.8e-06 Score=77.05 Aligned_cols=288 Identities=15% Similarity=0.184 Sum_probs=162.6
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcC-----------------
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKD----------------- 88 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------- 88 (377)
+-|+.|.+.|.+.+|.+....=. .+..|......+..++.+..-+++|-.+|+++.....
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~---~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiel 696 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDE---ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIEL 696 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHH---HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHH
Confidence 45778888888888876543211 1344555555555555555555555555555433210
Q ss_pred ----CCcc--chhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC
Q 042154 89 ----ISKE--GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD 162 (377)
Q Consensus 89 ----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 162 (377)
.|.. .+-......+...|+++.|...|-+.. .....+.+....+.|.+|+.+++.+..+ +..
T Consensus 697 arfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq---k~~ 764 (1636)
T KOG3616|consen 697 ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTA 764 (1636)
T ss_pred HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh---ccc
Confidence 0000 000111122222333333333332211 1112344455667788888888877543 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
+..|..+...|...|+++.|+++|-+.- .++-.|..|.++|++.+|.++-.+... .......|-+-..-
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAED 833 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHh
Confidence 4457777788888888888888885432 355677888888888888887766543 23444556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNL 322 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 322 (377)
+-+.|++.+|.++|-.+. .|+. .+..|-+.|..+..+++.++..-..-..|...+..-|-..|+...|...
T Consensus 834 ldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 777788888877775443 3443 3556777777777777777222122334555666667777777777766
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042154 323 CKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
|-+.-+ |.+-+..|..++-|++|.++
T Consensus 905 flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 905 FLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 644322 33334444444555544443
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=8.8e-09 Score=54.59 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=18.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 042154 330 RCLVDQAPLQLVVDRLAKELRVEEAKELVELG 361 (377)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 361 (377)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.4e-05 Score=71.54 Aligned_cols=298 Identities=16% Similarity=0.160 Sum_probs=139.9
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCC-CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGR-FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
.||......+.++...+-+.+-+++++++.-.+. +..+...-+.|+-...+ -+.....++.+++.....+ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~-------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP-------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch-------h
Confidence 4566667777888888888888888888763321 22223233333333333 3344555555554443211 2
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
+.......+-+++|..+|++.-- +..+.+.|+. .-+..+.|.++-++.. .+..|..+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcC
Confidence 33444455556666666655422 2222232322 1223333433333321 2233444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--------------------------C
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR--------------------------P 231 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------~ 231 (377)
.+.+|++-|-+. .|+..|..+++...+.|.+++-.+.+....++.-. |
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gp 1192 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGP 1192 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCC
Confidence 444444433222 13344444555555555555544444444433322 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 042154 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVC 311 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 311 (377)
+......+.+-|...|.++.|.-+|.. ...|..|...+...|++..|...-++. .+..+|..+-.+|.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA---NSTKTWKEVCFACV 1260 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHh
Confidence 444444444444444444444433332 223444444555555555554443311 12345555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 312 EKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 312 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
..+.+.-| +|...++.....-...++..|...|-+++...+++...
T Consensus 1261 d~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1261 DKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 54444332 22333333334445566666777777777666666543
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.2e-05 Score=72.86 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=153.0
Q ss_pred CchHHHHHH--HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc--------CC
Q 042154 20 GPKFIGSVI--RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK--------DI 89 (377)
Q Consensus 20 ~~~~~~~li--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~ 89 (377)
|+.+-..++ +.|...|+.+.|.+-.+-++... .|..+.+.|.+..+.+-|.-.+-.|.... ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~-------vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDS-------VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhH-------HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 444444444 23556666666666666655432 46666666666666665555544443210 01
Q ss_pred CccchhHHHHHHHHccCCHHHHHHHHHhcCCCCC-----------------------CccHHHHHHHHHHHHhCCChhHH
Q 042154 90 SKEGFTARLIALYGKAAMFENARKVFDEMPGRNC-----------------------EQTVLSFNALLGACVNSKKFDEV 146 (377)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~a 146 (377)
.+...-....-.....|.+++|+.+|.+-+..++ ..=..+|.....-+-..+|.+.|
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHH
Confidence 1111111233333444555555555544332210 00112333334444445555555
Q ss_pred HHHHHhchhh------------------cCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 042154 147 DGLFKDLPHK------------------LGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF 208 (377)
Q Consensus 147 ~~~~~~~~~~------------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (377)
++.|++.... -.-..|...|......+-..|+.+.|+.+|..+.. |.+++...
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 5555442100 00011333344444444445555555555544432 33344444
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHHHHHHHHHHH--Hh
Q 042154 209 YSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE--I----NPDVFTFYALIKGF--VN 280 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~----~p~~~~~~~l~~~~--~~ 280 (377)
|-.|+.++|-++-++- -|....-.+.+.|...|++.+|...|.+...-. + +.|. -..|...+ ..
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSG 1020 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcC
Confidence 5555555555544332 245556667888888888888888887764310 0 0010 01111122 22
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------HHh--cCCCCChhhHHHHHHHHHhcCC
Q 042154 281 EGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR--------TFS--ERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
..+.-.|-++|++.|...+ ..+..|-+.|.+.+|+++--+ ++. .....|+...+.-.+-++...+
T Consensus 1021 ~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred chhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 2344455566665543222 223356677777777665322 112 2334567777777777888888
Q ss_pred HHHHHHHHHhhc
Q 042154 351 VEEAKELVELGK 362 (377)
Q Consensus 351 ~~~A~~~~~~~~ 362 (377)
+++|..++-.+.
T Consensus 1096 yekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 888887765543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=5.3e-07 Score=80.11 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=150.2
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
..||-...-..+...+...|-...|+.+|++.. .|..+|.+|+..|+..+|..+..+-.+ .+|+..+|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 445556666677777788888888888887653 466777888888888888887776665 35666777
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (377)
..+.+......-+++|.++++..... +-..+......+++++++.+.|+.-.+.. +.-..+|-...-+..+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHH
Confidence 66777766666677777777664432 11222222334677777777776554321 2234467777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
.++++.|.+.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.
T Consensus 532 lek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 7788887777777766532 255677888888888888888888887777766 34455666666667777888887777
Q ss_pred HHHHHhC
Q 042154 256 VGEMRSK 262 (377)
Q Consensus 256 ~~~~~~~ 262 (377)
+.++...
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 7776543
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=5.6e-06 Score=64.97 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=58.9
Q ss_pred HHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----
Q 042154 135 GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS---- 210 (377)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 210 (377)
..|+..+++++|++...... +......-...+.+..+.+-|.+.+++|.+- .+..|.+.|..++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 34556666666665554421 1122222223344555556666666666543 133444444444332
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 211 NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
.+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..++++.+..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455566666666543 2355555555555555566666666666665554
No 110
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=6.4e-06 Score=69.27 Aligned_cols=215 Identities=9% Similarity=-0.021 Sum_probs=118.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC-ChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK-RFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
++..+-..+...++.++|+..+.++.+.. |-+..+|+....++...| ++++++..++++.+..+.....++ .....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~-~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH-HRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH-HHHHH
Confidence 34444455555667777777777777654 444555665555555555 467777777777665444333332 23333
Q ss_pred HHccCC--HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc---
Q 042154 102 YGKAAM--FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK--- 176 (377)
Q Consensus 102 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 176 (377)
+.+.|+ .+++..+++++.+.. +-+..+|+...-.+...|+++++++.++++++. + .-+..+|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhcccc
Confidence 334444 255666666666654 345666776666666777777777777777653 1 22344555544444333
Q ss_pred CCH----HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042154 177 GSL----DSANTLLYEMEKKGIRLDLITFNTLLLGFYSN----GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245 (377)
Q Consensus 177 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (377)
|.. ++.++...++....+ -|...|+-+...+... ++..+|.+.+.+....+ +.+......++..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 212 345555555554432 2555666565555552 23344666666555443 2344555556666554
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=5.9e-06 Score=77.53 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=71.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 042154 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLG 135 (377)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 135 (377)
+...+..|+..+...+++++|.++.+......+..-..+| .+...+...++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy-~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALY-ISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHH-HHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 4455566666666666666666666654444322222222 233344444543333332 1222
Q ss_pred HHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHH
Q 042154 136 ACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (377)
......++.-+..++..+.. ..-+..++..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 23333333333333333321 11223345555555666666666666666666554 22555566666666555 666
Q ss_pred HHHHHHHHHHh
Q 042154 216 DAEKIWETMVN 226 (377)
Q Consensus 216 ~a~~~~~~~~~ 226 (377)
+|.+++.+...
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=8.3e-06 Score=76.56 Aligned_cols=173 Identities=13% Similarity=0.171 Sum_probs=118.2
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.|.+...+..|+..+...+++++|.++.+...+.. |-....|-.+...+.+.++.+.+..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 34568899999999999999999999999777654 44445555555566777775554444
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK 176 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 176 (377)
.++.......++.....+...|...+ -+..++..+..+|-+.|+.++|..+|+++.+- . +-|+.+.|.+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh
Confidence 24444444445544445555555543 44557777888888888888888888888754 2 34566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
++++|.+++.++... +...+++.++..+|.++....
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC
Confidence 888888887777654 445556667777777766653
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=2.9e-06 Score=66.47 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
+...+.-.|+-+....+........ +.|....+..+....+.|++..|+..+++... .-++|..+|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 4444444555555555444433221 23344444455555555555555555555532 33445555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
+.++|..-|.+..+.... +...++.+.-.+.-.|+++.|..++......+. -|...-..+.......|+++.|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555555554222 344455555555555555555555555554431 244444445555555555555555544
Q ss_pred HH
Q 042154 258 EM 259 (377)
Q Consensus 258 ~~ 259 (377)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.71 E-value=9.2e-06 Score=72.74 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=105.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC
Q 042154 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK 142 (377)
Q Consensus 63 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (377)
.+.+....++|.+|+.+++.+...+ ....+|..+...|+..|+++.|+++|.+.- .++..|.+|.++|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3445556777888888888776653 445677778888889999999988887643 34456778889999
Q ss_pred hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 042154 143 FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWE 222 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (377)
|+.|.++-.+.. |.......|-.-..-+-+.|++.+|++++-.+. .|+ ..|..|-+.|..+..+++.+
T Consensus 807 w~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 998888877764 444455566666666667777777777664332 122 24556666666666666554
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
+-.... -..|...+..-+...|+...|..-|-
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 432111 11233334444445555555554443
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=5.8e-06 Score=74.81 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=164.9
Q ss_pred cchhhHHHHHH--HHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCC-CC--------
Q 042154 55 TNTGIYTGTVQ--RLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGR-NC-------- 123 (377)
Q Consensus 55 ~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-------- 123 (377)
.|..|-..+++ .|...|+.+.|.+-.+-++... +|..+.++|.+..+++-|.-.+..|... |.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~------vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDS------VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhH------HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45556555554 4566899999988887776654 2556888888888877777666666432 10
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 042154 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT 203 (377)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (377)
.|+ ..-..+.-.....|..++|..+|.+..+ |..+=+.|...|.|++|.++-+.-..-. =..||..
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 121 2222233345678999999999999854 4555567778899999998875433321 2345666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042154 204 LLLGFYSNGRFADAEKIWETMV----------NMN---------VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 264 (377)
....+-..+|.+.|++.|++.. ... -..|...|.-....+...|+.+.|+.+|....+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 6777777788888888776432 111 113445555555666677888888888877653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 265 NPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 265 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
|-+++...|-+|+.++|-++-++.| |......|.+.|-..|++.+|..+|.++..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5567777888999999999988665 455566788899999999999988877653
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=5.2e-06 Score=64.95 Aligned_cols=119 Identities=8% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HcCCC--HHH
Q 042154 140 SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF-YSNGR--FAD 216 (377)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~ 216 (377)
.++.+++...+++..+. -+.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 33444444444444332 1334445555555555566666666666555554322 444555555542 44444 355
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
|.+++++..+.+ +-+...+..+...+...|++++|+..|+++.+.
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666555544 224455555555555566666666666665554
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=5.8e-06 Score=64.72 Aligned_cols=154 Identities=9% Similarity=0.044 Sum_probs=113.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042154 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (377)
+-.|...|+++.+....+.+... . ..+...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678899988876555332211 1 01223667788888888887765 56788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 250 KKALELVGEMRSKEINPDVFTFYALIKGF-VNEGN--LEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 250 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~~~--~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.++++ .....| +...+..+...+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998863 33567777777764 66676 589999999 444444 66778888889999999999999999
Q ss_pred HHHhcCCCCChhhH
Q 042154 325 RTFSERCLVDQAPL 338 (377)
Q Consensus 325 ~~~~~~~~~~~~~~ 338 (377)
++.+... |+..-+
T Consensus 169 ~aL~l~~-~~~~r~ 181 (198)
T PRK10370 169 KVLDLNS-PRVNRT 181 (198)
T ss_pred HHHhhCC-CCccHH
Confidence 9988643 344433
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.5e-05 Score=58.88 Aligned_cols=247 Identities=12% Similarity=0.063 Sum_probs=118.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh
Q 042154 65 QRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144 (377)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (377)
+-+--.|++..++..-......+..+...+| +.++|...|....... +++... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y--~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVY--MYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHH--HHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3344456666666555544433222222333 5556666665443332 222221 233333333333333333333
Q ss_pred HHH-HHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 042154 145 EVD-GLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223 (377)
Q Consensus 145 ~a~-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (377)
.-+ ++.+.+... ....+......-...|+..+++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 90 ~~~~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 90 SILASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 223333222 222332333333455666667777766665521 222222223344555566677777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCC
Q 042154 224 MVNMNVRPNVRSYNARLDGLAI----EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCG 297 (377)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~ 297 (377)
|.+-. +..+.+.|..++.+ .+.+..|.-+|++|-+. ..|++.+.+....++...|++++|..+++ -....
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 76642 44555555555543 24566667777776654 45666666666666666777777777666 12222
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 042154 298 MNKAIFKLLVPFVCEKGDL-DFAFNLCKRTFS 328 (377)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 328 (377)
.++.+...++.+-...|.. +...+.+.++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3444444444433344433 333344444444
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00019 Score=62.17 Aligned_cols=305 Identities=11% Similarity=0.062 Sum_probs=198.3
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|++-..|..-..+|...|++++|++=-.+.++.. |.-+..|+....++...|++++|+..|.+-.+.. +.+..+++-
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHh
Confidence 3466677777788888888888887766666543 3346678888888888888888888887766542 233333333
Q ss_pred HHHHHH---------------------------------------------------ccCCHHHHHHHHHhc-----CCC
Q 042154 98 LIALYG---------------------------------------------------KAAMFENARKVFDEM-----PGR 121 (377)
Q Consensus 98 l~~~~~---------------------------------------------------~~~~~~~A~~~~~~~-----~~~ 121 (377)
+..++. ...++..|...+... ...
T Consensus 110 l~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~ 189 (539)
T KOG0548|consen 110 LAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYAS 189 (539)
T ss_pred HHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccc
Confidence 333331 100111122111110 000
Q ss_pred -------CCCc------------c----------HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHH
Q 042154 122 -------NCEQ------------T----------VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172 (377)
Q Consensus 122 -------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (377)
+..| | ..-...+.++..+..+++.|++-+...... .-+..-++....+
T Consensus 190 ~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~ 266 (539)
T KOG0548|consen 190 GIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAV 266 (539)
T ss_pred ccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHH
Confidence 0011 0 112445667777788888888888887653 3344456666678
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH-------HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH--------
Q 042154 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNT-------LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYN-------- 237 (377)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------- 237 (377)
+...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.++..|.+.......|+...-.
T Consensus 267 ~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 267 YLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALK 345 (539)
T ss_pred HHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Confidence 88888888877777776665533 2222332 3345666788999999998877654444433211
Q ss_pred -----------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC
Q 042154 238 -----------------ARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN 299 (377)
Q Consensus 238 -----------------~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~ 299 (377)
.-...+.+.|++..|+..|.+++... +-|...|.....+|.+.|.+..|++-.+ .....|+
T Consensus 346 ~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 346 EAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 11344678899999999999999875 4567899999999999999999998877 3333444
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 300 -KAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 300 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
...|.-=..++....++++|.+.|++.++.+
T Consensus 425 ~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 425 FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555667777789999999999998864
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=9.9e-06 Score=63.58 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=110.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 042154 131 NALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS 210 (377)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (377)
..+-..+...|+-+....+..+... ...-|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 4455666777777777766666432 223344455567777788888888888888877653 4577788888888888
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 211 NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 290 (377)
.|+++.|..-|.+..+... -+...++.+.-.+.-.|+.+.|..++......+. -|...-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888887776542 3456677777777778888888888887776532 2555666677777778888888887
Q ss_pred HH
Q 042154 291 YN 292 (377)
Q Consensus 291 ~~ 292 (377)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 76
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=2.2e-05 Score=72.95 Aligned_cols=201 Identities=10% Similarity=0.040 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHH-HHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEE-ILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLG 135 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 135 (377)
+.....+=.+++..|..++|-+ ++.++. .++....+.....+++.-...... .++.++.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 3333334445556677776644 333222 233333333333333332222222 23456889999999
Q ss_pred HHHhCCChhHHHHHHHhchhhcCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCH
Q 042154 136 ACVNSKKFDEVDGLFKDLPHKLGIEPDLV-SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRF 214 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (377)
...+.|..++|..+++...+ ..|+.. ....+...+.+.+++++|+...++....... +......+..++.+.|++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence 99999999999999999874 467654 6777888999999999999999999987543 677788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276 (377)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 276 (377)
++|..+|+++...+ +-+..++..+..++-..|+.++|...|+...+. ..|....|+.++.
T Consensus 171 ~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 230 (694)
T PRK15179 171 EQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH
Confidence 99999999999854 344788888999999999999999999999876 2345566665543
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=0.00021 Score=61.37 Aligned_cols=200 Identities=14% Similarity=0.051 Sum_probs=131.5
Q ss_pred CHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 042154 107 MFENARKVFDEMPGRN--CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANT 184 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (377)
++.++...-+.+...+ -.|+...+...+.+......-..+..++.+..+. .-...-|..-+ .+...|++++|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHH-HHHHhcccchHHH
Confidence 4555555556665432 1355556666666554443333333333222110 11222333333 4557788888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042154 185 LLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN-VRSYNARLDGLAIEKQTKKALELVGEMRSKE 263 (377)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 263 (377)
.++.+.+.. +-|........+.+...++.++|.+.++++.... |+ ....-.+..++.+.|++.+|+.++++....
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~- 403 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN- 403 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Confidence 888887763 3466666777778888888888888888888764 44 455666778888888888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 264 INPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 264 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
.+-|+..|..|.++|...|+..++... ....|...|+++.|...+....+.
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A---------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLA---------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 355778888888888888887666544 345567788888888888887765
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=7.6e-05 Score=63.92 Aligned_cols=207 Identities=13% Similarity=0.071 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHhhhhcCC--CccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHH
Q 042154 72 RFRWIEEILEHQKQYKDI--SKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL 149 (377)
Q Consensus 72 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (377)
+...+....+.+...+.. ++..+....+........-..+..++.+..+.+ ......-..-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHH
Confidence 444455455555443322 233334444443333333233333333333311 233333334446678999999999
Q ss_pred HHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 042154 150 FKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229 (377)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (377)
++.+... .+-|+..+......+.+.++.++|.+.++++...... .....-.+.++|.+.|++.+|+.+++......
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 9998764 2334455566678999999999999999999987332 25666778899999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHH
Q 042154 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIF 303 (377)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~ 303 (377)
+-|...|..|..+|...|+..++..-..+ .+...|+++.|...+. ....+++..+|
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 56889999999999999998887665544 4556788888888777 33344444443
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.00047 Score=63.51 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=106.7
Q ss_pred hhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH-
Q 042154 32 YKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN- 110 (377)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 110 (377)
.+.|+.++|..+++.....+ +.|..|...+-..|.+.++.++|..+|+++.+..+ +......+..+|.+.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P--~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP--SEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776666554443 23666667777777777777777777777665432 23333356666666665544
Q ss_pred ---HHHHHHhcCCCCCCccHHHHHHHHHHHHhCC-C---------hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 111 ---ARKVFDEMPGRNCEQTVLSFNALLGACVNSK-K---------FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 111 ---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
|.+++....+ ....+=.+++...+.. . ..-|.+.++.+.++.|..-+..-...-...+...|
T Consensus 130 Qkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 130 QKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 4444443322 2333323333333221 1 12244444555444331112222222233445678
Q ss_pred CHHHHHHHHH-HHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 178 SLDSANTLLY-EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 178 ~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8899998884 33343344455556677888888999999999999999887
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=5.9e-05 Score=61.91 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=167.1
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHH-HHHHHhcCChHHHHHHHHHhhhhcCCCccchh-HHHHHHHH
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGT-VQRLANAKRFRWIEEILEHQKQYKDISKEGFT-ARLIALYG 103 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 103 (377)
+|.+.---.-.+++|+++|......+ |+-...+.- .-+|.+..-++-+.+++.-..+.- |+..+. |..+....
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLF 230 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHh
Confidence 44444444556899999999887543 344444433 334556666777777776655542 232222 11111111
Q ss_pred c--cCCHHHHH--HHHHh----------cCCCC------------CCcc-----HHHHHHHHHHHHhCCChhHHHHHHHh
Q 042154 104 K--AAMFENAR--KVFDE----------MPGRN------------CEQT-----VLSFNALLGACVNSKKFDEVDGLFKD 152 (377)
Q Consensus 104 ~--~~~~~~A~--~~~~~----------~~~~~------------~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (377)
+ .|+..+++ .+-+. +.+.+ +-|+ +.+--.++-.|.+.+++.+|..+.+.
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred hhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 1 12211111 11111 11100 0111 12223344457888899999888877
Q ss_pred chhhcCCCcCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 153 LPHKLGIEPDLVSYNTIIKAFVDKG-------SLDSANTLLYEMEKKGIRLD-LITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 153 ~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
+. ...|-......+. ++..| ...-|.+.|+-.-..+..-| ..--.++...+.-..++++.+-.+..+
T Consensus 311 l~---PttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 311 LD---PTTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred cC---CCChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 2333332222222 22333 24456666665554443322 223444555555556788888888777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 042154 225 VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTF-YALIKGFVNEGNLEEAKRWYNKSGCGMNKAIF 303 (377)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (377)
...=...|...+| +..+++..|.+.+|+++|-.+..-.++ |..+| ..|..+|.+.+.++.|+.++-...-+.+..+.
T Consensus 386 ~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsL 463 (557)
T KOG3785|consen 386 ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSL 463 (557)
T ss_pred HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHH
Confidence 7654434444444 678888999999999999877654444 44455 55677888899999999988755434444443
Q ss_pred H-HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 042154 304 K-LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPL 338 (377)
Q Consensus 304 ~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 338 (377)
- .+..-|.+.+++--|-+.|+.+... .|+++-|
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 3 4445788888888888888887764 4444443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=3.5e-05 Score=71.59 Aligned_cols=234 Identities=9% Similarity=0.067 Sum_probs=160.6
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh--cCCCccchhHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY--KDISKEGFTAR 97 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 97 (377)
++.....+=.++..-|..++|-+-+.. .+=....+.+.+..+.+.+-++... ..+.+...+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQ---------------QARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHH---------------HHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 445555555566666776666433221 1112233344444443333333221 24454566667
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH-HHHHHHHHHHHHc
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL-VSYNTIIKAFVDK 176 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 176 (377)
|.....+.|..++|+.+++...+.. |-+......+...+.+.+++++|+..+++.... .|+. .....+..++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 445667888999999999999999999999753 5554 4677778899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .|....|+..+ ++...-..++
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~ 239 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAAL 239 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHH
Confidence 99999999999999853 3468889999999999999999999999998753 35556666543 3344556667
Q ss_pred HHHHhCCCC----CCHHHHHHHHHHHHh
Q 042154 257 GEMRSKEIN----PDVFTFYALIKGFVN 280 (377)
Q Consensus 257 ~~~~~~g~~----p~~~~~~~l~~~~~~ 280 (377)
+++.-.+.. .........+.-|.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 240 RRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 766544322 223334444544544
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1.3e-06 Score=64.67 Aligned_cols=90 Identities=3% Similarity=-0.194 Sum_probs=41.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC
Q 042154 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK 142 (377)
Q Consensus 63 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (377)
+...+...|++++|...|+......+. +...+..+..++...|++++|...|++....+ +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344444445555555555444443222 22222334444455555555555555544433 2344444444444555555
Q ss_pred hhHHHHHHHhch
Q 042154 143 FDEVDGLFKDLP 154 (377)
Q Consensus 143 ~~~a~~~~~~~~ 154 (377)
+++|+..|+...
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=6.4e-05 Score=58.80 Aligned_cols=187 Identities=16% Similarity=0.195 Sum_probs=120.9
Q ss_pred CCChhHHHHHHHhchhhc--C-CCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHH
Q 042154 140 SKKFDEVDGLFKDLPHKL--G-IEPDLV-SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215 (377)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~--~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (377)
..+.++..+++.++.... | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 345677777777765432 3 344443 4555556667778888888888887765 2223333222233344567888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hc
Q 042154 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KS 294 (377)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~ 294 (377)
+|.++++.+.+.+ +.|.+++-.=+...-..|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++ -.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888776 456666666666666677777777777777765 56678888888888888888888888888 33
Q ss_pred CCCC-CHHHHHHHHHHHHh---cCChHHHHHHHHHHHhc
Q 042154 295 GCGM-NKAIFKLLVPFVCE---KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 295 ~~~~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 329 (377)
-+.| ++-.+..+...+.- ..+.+.|.++|.+.++.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3344 44445555554433 33566677888777774
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.0003 Score=57.65 Aligned_cols=304 Identities=10% Similarity=0.019 Sum_probs=225.1
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHH-
Q 042154 53 FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFN- 131 (377)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 131 (377)
-+.++.-...+...+...|++..|+.-|..+....+..-..+| .-...|...|+-..|+.=+.+.++.. ||-..-.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aif-rRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIF-RRATVYLAMGKSKAALQDLSRVLELK--PDFMAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHH
Confidence 3456666778889999999999999999988876655555556 46778889999999999999988864 7754332
Q ss_pred HHHHHHHhCCChhHHHHHHHhchhhcCCCcCHH----H------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 042154 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLV----S------------YNTIIKAFVDKGSLDSANTLLYEMEKKGIR 195 (377)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 195 (377)
.-...+.+.|.++.|..-|+..++. .|+.. . ....+..+...||...|+.....+++.. +
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 2345688999999999999999865 34211 1 1223445566889999999999999873 5
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--
Q 042154 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA-- 273 (377)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-- 273 (377)
.|...|..-..+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.++...++.++. .||......
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 688899999999999999999998888777654 245566666777788999999999999998874 566543211
Q ss_pred -----HH------HHHHhcCCHHHHHHHHH-hcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 042154 274 -----LI------KGFVNEGNLEEAKRWYN-KSGCGMN-----KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336 (377)
Q Consensus 274 -----l~------~~~~~~~~~~~a~~~~~-~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 336 (377)
+. ......+++.++.+-.+ -....|. ...+..+-.++...|++.+|++...+.++.... |..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHH
Confidence 11 11234566666666555 2223343 223455666788889999999999999885322 477
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 337 PLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 337 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
++.--..+|.-...++.|..-|+.+.+.+..
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 8888889999999999999999999887653
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1e-05 Score=59.91 Aligned_cols=92 Identities=10% Similarity=-0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcC
Q 042154 237 NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKG 314 (377)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g 314 (377)
..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++ .....| +...+..+..++...|
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 344555556666666666666665542 2245556666666666666666666666 222233 4455666666666666
Q ss_pred ChHHHHHHHHHHHhc
Q 042154 315 DLDFAFNLCKRTFSE 329 (377)
Q Consensus 315 ~~~~a~~~~~~~~~~ 329 (377)
++++|+..|+..++.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666654
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=9.7e-05 Score=57.81 Aligned_cols=189 Identities=12% Similarity=0.141 Sum_probs=99.9
Q ss_pred cccHHHHHHHHHhcccC---CCCccch-hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHH
Q 042154 34 ENNLKRLVDKFKKSSDL---GRFRTNT-GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFE 109 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (377)
..+.++.++++..+... +...++. ..|..++-+....|+.+.|...++.+...- +.+..+...-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566666666665421 1122332 234455555556666666666666665543 233333322233344456666
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 042154 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEM 189 (377)
Q Consensus 110 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (377)
+|.++++.+.+.+ |.|..++-.-+...-..|+--+|++-+....+ .+..|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 6666666666655 44555555555555555555566666655554 33456666666666666666666666666666
Q ss_pred HHCCCCCCHHhHHHHHHHHHcCC---CHHHHHHHHHHHHhC
Q 042154 190 EKKGIRLDLITFNTLLLGFYSNG---RFADAEKIWETMVNM 227 (377)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 227 (377)
.-..+ .+...+..+...+.-.| ++..+.+.|.+..+.
T Consensus 181 ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55422 23444444444333222 445555566555554
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=3.9e-05 Score=71.07 Aligned_cols=164 Identities=15% Similarity=0.056 Sum_probs=122.2
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCC-CccchhHHHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDI-SKEGFTARLI 99 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 99 (377)
...|..|...|+...+...|...|+++.+.+ ..+......+.+.+++..+++.|..+.-...+.... ....-+....
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 4578899999999889999999999998876 667888999999999999999999985443332111 1111122355
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHH--HHHHHHHcC
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT--IIKAFVDKG 177 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~ 177 (377)
-.|.+.++...|..-|+...... |-|...|..+..+|.+.|++..|+++|.+.. -+.|+.. |.. ..-.-+..|
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~-y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSK-YGRFKEAVMECDNG 644 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhH-HHHHHHHHHHHHhh
Confidence 56788899999999999988776 5588899999999999999999999998875 3455542 222 122345677
Q ss_pred CHHHHHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEK 191 (377)
Q Consensus 178 ~~~~a~~~~~~~~~ 191 (377)
.+.++...+.....
T Consensus 645 kYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 645 KYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888777776653
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=2.2e-05 Score=58.37 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=9.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 042154 241 DGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 134
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0003 Score=65.66 Aligned_cols=163 Identities=10% Similarity=0.208 Sum_probs=112.5
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
..+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.|++..+++....+....|... +.|
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SEL 1172 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHH
Confidence 45678888888888888888888887544 255678899999999999999999888777665444433 458
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
+-+|++.+++.+-++.+. | |+......+.+-|...+.++.|.-+|... .-|..+...+...|+
T Consensus 1173 i~AyAkt~rl~elE~fi~-----g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA-----G--PNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHHHhchHHHHHHHhc-----C--CCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHH
Confidence 888999888887765542 3 67777777777788888888777766544 236666666667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (377)
++.|.+.-+++. +..||..+-.+|...+.
T Consensus 1236 yQ~AVD~aRKAn------s~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1236 YQGAVDAARKAN------STKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHHHHHhhhcc------chhHHHHHHHHHhchhh
Confidence 766655443332 34455555445444433
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=1.6e-05 Score=58.41 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=38.8
Q ss_pred HHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 042154 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN 211 (377)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (377)
.+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...++...+.+ +.+...+..+..++...
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 3334444444444444444444321 11233344444444444444444444444444332 12333344444444444
Q ss_pred CCHHHHHHHHHHHHh
Q 042154 212 GRFADAEKIWETMVN 226 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~ 226 (377)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444444
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=1.6e-05 Score=68.26 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHhcC
Q 042154 237 NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSG-CGMNKAIFKLLVPFVCEKG 314 (377)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~-~~~~~~~~~~l~~~~~~~g 314 (377)
..++..+...++++.|+++++++.+.. |+ ....++..+...++-.+|.+++. ... .+.+......-...|.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344444555566666666666666542 33 23335555555566666666666 222 1224445555556667777
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
+++.|+++.+++.+..+. +..+|..|..+|.+.|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777664322 44477777777777777777777777665
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=0.0001 Score=68.47 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHhcCC
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGMNKAIFKLLVPFVCEKGD 315 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~ 315 (377)
+....+++-|...|...+... +.+...|..........|+.-++..+|. ..|-.+....|..........|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 344556677777777666542 2234445444444455666666666666 33334444444444444555555
Q ss_pred hHHHHHHHHH----------HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 316 LDFAFNLCKR----------TFSERCLVDQAPLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 316 ~~~a~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
.++-+...+. .... .+-+...|.+.+...-..+.++.|.++..+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5443332222 2222 222444666666666666666666655544
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=4.5e-06 Score=61.30 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 042154 58 GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGAC 137 (377)
Q Consensus 58 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (377)
.....+...+...|++++|.+.++.+....+. +...+..+..++...|++++|..+++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33444444455555555555555555443322 22333345555555555555555555554443 33344444455555
Q ss_pred HhCCChhHHHHHHHhch
Q 042154 138 VNSKKFDEVDGLFKDLP 154 (377)
Q Consensus 138 ~~~~~~~~a~~~~~~~~ 154 (377)
...|++++|...|+...
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 96 LALGEPESALKALDLAI 112 (135)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555554
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=4.2e-05 Score=65.80 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=52.4
Q ss_pred HHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCH
Q 042154 135 GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRF 214 (377)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (377)
..+...++++.|+.+|+++.+. .|+ ....+++.+...++-.+|.+++++..+.. +.+..........+.+.+++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 3333444455555555554432 132 22234444444444445555555444331 11333344444444455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042154 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (377)
+.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555554432 122234555555555555555555444443
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0016 Score=56.78 Aligned_cols=343 Identities=11% Similarity=0.154 Sum_probs=203.1
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
..|-|..+|..||+-+..+ ..+++.+.++++... +|.....|..-|..-...++++..+.+|.+..... .+..+|
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 3467899999999998877 999999999999865 57778889999999999999999999999987753 335666
Q ss_pred HHHHHHHHcc-CCHHH----HHHHHHhc-CCCCCCc-cHHHHHHHHHH---------HHhCCChhHHHHHHHhchhhcCC
Q 042154 96 ARLIALYGKA-AMFEN----ARKVFDEM-PGRNCEQ-TVLSFNALLGA---------CVNSKKFDEVDGLFKDLPHKLGI 159 (377)
Q Consensus 96 ~~l~~~~~~~-~~~~~----A~~~~~~~-~~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~ 159 (377)
...+..-.+. |+... ..+.|+-. .+.|+.+ +...|+..+.. +..+.+++...++|+++... .+
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cc
Confidence 5444433222 33322 33344433 2344333 33446655554 33445667788888887653 11
Q ss_pred Cc------CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHH--CCCCCCHH---------------hHHHHHH---
Q 042154 160 EP------DLVSYNTIIKAF-------VDKGSLDSANTLLYEMEK--KGIRLDLI---------------TFNTLLL--- 206 (377)
Q Consensus 160 ~p------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~--- 206 (377)
.- |-..|..=|+.. -+...+..|.++++++.. .|...+.. .|-.+|.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 00 111121111111 122344555555555442 12110000 0111111
Q ss_pred -------------------------H---------------------HHcCCC-------HHHHHHHHHHHHhCCCCCCH
Q 042154 207 -------------------------G---------------------FYSNGR-------FADAEKIWETMVNMNVRPNV 233 (377)
Q Consensus 207 -------------------------~---------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 233 (377)
. +...|+ -+++..+++.....-...+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 111111 23344444433332111233
Q ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCC-CHHHHHH
Q 042154 234 RSYNARLDGLAIE---KQTKKALELVGEMRSK-EINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGM-NKAIFKL 305 (377)
Q Consensus 234 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~-~~~~~~~ 305 (377)
.+|..+...--.. +..+.....+++++.. ...| ..+|..++..-.+...+..|+.+|. +.+..+ ++.++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 3333332211111 1355666777777654 2333 3468888888889999999999999 444444 6677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
++.-+| .++..-|.++|+--++. ..-++.-....++-+...|+-..|..+|++....+.+
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 887666 46789999999887775 3334555566788888999999999999999887543
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.2e-06 Score=47.14 Aligned_cols=33 Identities=42% Similarity=0.695 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 267 (377)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.31 E-value=2.3e-05 Score=67.75 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHH
Q 042154 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK--EINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIF 303 (377)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~ 303 (377)
.+.+......++..+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..++++.+++ ..|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456677777888887778888888888887765 222223455688888888888888888888 78888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKE 348 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (377)
+.|++.+.+.|++..|.++...|..++...++.|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666777766555555554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=6.2e-05 Score=55.90 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=7.6
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 042154 173 FVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~ 191 (377)
+...|++++|...|+.+..
T Consensus 58 ~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHCCCHHHHHHHHHHHHh
Confidence 3333444444444444333
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.00033 Score=58.83 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQ 85 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 85 (377)
.....+.+..++..|+..+....+.. +.++.-|..-+..+...++++++.--.++-.+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 33445556666667777776666553 45555566666666666666666555544333
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2.2e-06 Score=46.03 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 335 (377)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999988888873
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.25 E-value=2.3e-06 Score=45.59 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINP 266 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p 266 (377)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.24 E-value=1.7e-05 Score=68.48 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=70.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 042154 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGI-EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202 (377)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (377)
+.+......+++.+....+++.+..++.+....... ..-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555555566665666666666666555432111 1122344566666666666666666666666666666666666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042154 203 TLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245 (377)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (377)
.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666655544454555444444443
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=2.4e-06 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=17.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNMNVRP 231 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (377)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.0014 Score=60.62 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=139.0
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH--HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA--CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
-....+++..|.+-.+.+.+.. |+.. |..++.+ +.+.|+.++|..+++....- +. .|..|...+-.+|...++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~-~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-KG-TDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-CC-CchHHHHHHHHHHHHHhh
Confidence 3456678888888888877654 4433 2223333 56788888888888776432 21 266688888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK-Q--------- 248 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------- 248 (377)
.++|..+|++..+. -|+......+..+|.+.+++.+-.+.--++-+. .+-+...+-++++.+.+.- .
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999888876 455777777788888887776544444444332 2233444444555444321 1
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH----hcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 042154 249 TKKALELVGEMRSKE-INPDVFTFYALIKGFVNEGNLEEAKRWYN----KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLC 323 (377)
Q Consensus 249 ~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 323 (377)
..-|.+.++.+.+.+ -.-+..-.......+...|++++|.+++. ..-..-+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 223555566666543 11122222233344556788888888886 2222234444456677788888888888888
Q ss_pred HHHHhcCCC
Q 042154 324 KRTFSERCL 332 (377)
Q Consensus 324 ~~~~~~~~~ 332 (377)
.++...+..
T Consensus 250 ~~Ll~k~~D 258 (932)
T KOG2053|consen 250 SRLLEKGND 258 (932)
T ss_pred HHHHHhCCc
Confidence 888887643
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.15 E-value=5.5e-05 Score=51.35 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=41.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHcCC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEKKGI-RLDLITFNTLLLGFYSNG--------RFADAEKIWETMVNMNVRPNVRSYNAR 239 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (377)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666665 556666666666555432 233444555555555555555555555
Q ss_pred HHHHH
Q 042154 240 LDGLA 244 (377)
Q Consensus 240 ~~~~~ 244 (377)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 151
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.14 E-value=0.0034 Score=52.65 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
.+...+...+..|+|+.|+++++.-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34444444455555555555554433
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.10 E-value=7.5e-05 Score=50.69 Aligned_cols=79 Identities=14% Similarity=0.309 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 042154 202 NTLLLGFYSNGRFADAEKIWETMVNMNV-RPNVRSYNARLDGLAIEK--------QTKKALELVGEMRSKEINPDVFTFY 272 (377)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~g~~p~~~~~~ 272 (377)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566666999999999999999999 899999999999887653 2446788999999999999999999
Q ss_pred HHHHHHHh
Q 042154 273 ALIKGFVN 280 (377)
Q Consensus 273 ~l~~~~~~ 280 (377)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988764
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=7.8e-05 Score=50.48 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042154 272 YALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL 349 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (377)
..+...+...|++++|...++ .....| +...+..+..++...|++++|.+.+++..+.... +..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 334445555566666666665 222222 2244555555666666666666666666654322 3345556666666666
Q ss_pred CHHHHHHHHHhhccC
Q 042154 350 RVEEAKELVELGKTN 364 (377)
Q Consensus 350 ~~~~A~~~~~~~~~~ 364 (377)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666665543
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=0.00012 Score=53.56 Aligned_cols=85 Identities=8% Similarity=-0.099 Sum_probs=37.9
Q ss_pred HHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042154 277 GFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA 354 (377)
Q Consensus 277 ~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 354 (377)
.+...|++++|.++|+ -..+.| +..-|-.|.-++-..|++++|+..|..+....+. |+..+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 3344445555555444 222222 2233444444444445555555555444444332 444444444445555555554
Q ss_pred HHHHHhhc
Q 042154 355 KELVELGK 362 (377)
Q Consensus 355 ~~~~~~~~ 362 (377)
.+-|+.++
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 44444443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=8.3e-05 Score=53.08 Aligned_cols=99 Identities=7% Similarity=-0.102 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCC-ccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCC--ccchhHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRF-RTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDIS--KEGFTARLI 99 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 99 (377)
++..+...+.+.|++++|...|+.+.+..+- +.....+..+...+...|+++.|.+.++.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555566666666666666666543200 1112344455555666666666666666555432221 112223455
Q ss_pred HHHHccCCHHHHHHHHHhcCCC
Q 042154 100 ALYGKAAMFENARKVFDEMPGR 121 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~ 121 (377)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555566666666666655554
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.05 E-value=0.0013 Score=54.87 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.00086 Score=60.23 Aligned_cols=247 Identities=13% Similarity=0.069 Sum_probs=144.2
Q ss_pred hhhccccCCCCCCCchHHHHHHHHhhhcccH------HHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHH
Q 042154 7 LLSCSFSTTATATGPKFIGSVIRGIYKENNL------KRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEIL 80 (377)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 80 (377)
++...++.+..|.-....+..|.++....+. ++|.++.+ -.|.+..|..+.......-.++.|+..|
T Consensus 643 lld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiE-------dnPHprLWrllAe~Al~Kl~l~tAE~AF 715 (1189)
T KOG2041|consen 643 LLDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIE-------DNPHPRLWRLLAEYALFKLALDTAEHAF 715 (1189)
T ss_pred EHhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHh-------cCCchHHHHHHHHHHHHHHhhhhHhhhh
Confidence 4555666666665555555555555444333 44444432 2577888999988888888888888888
Q ss_pred HHhhhh-cCCCccchhH------HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhc
Q 042154 81 EHQKQY-KDISKEGFTA------RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153 (377)
Q Consensus 81 ~~~~~~-~~~~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (377)
-+.... |...-..+-. .-...-+-.|.+++|+++|-++-.++ ..+..+.+.|+|-.+.++++.-
T Consensus 716 Vrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g 786 (1189)
T KOG2041|consen 716 VRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG 786 (1189)
T ss_pred hhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc
Confidence 665543 1111111110 01122223588999999998887764 2356677888888888877542
Q ss_pred hhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 042154 154 PHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNV 233 (377)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (377)
-....-..-...|+.+...++....|++|.+.+..-... ...+.++.+..++++-+.+-..+. .+.
T Consensus 787 ~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s 852 (1189)
T KOG2041|consen 787 GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDS 852 (1189)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----ccc
Confidence 111000111246888888888888888888777654321 124555555555555444444433 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
...-.+...+.+.|.-++|.+.+-+.. .|. ..+..|...+++.+|.++-+
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777776654422 121 23455666677777776666
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00015 Score=51.77 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC----HHHHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEI--NPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN----KAIFKLLV 307 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~----~~~~~~l~ 307 (377)
++..+...+.+.|++++|...|..+..... ......+..+..++...|+++.|...++ .....|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555666667777777777777765421 1112344556666667777777777776 1111222 34455566
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 042154 308 PFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 308 ~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.++.+.|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666777777777777766653
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=1.1e-05 Score=53.60 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 042154 35 NNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEH 82 (377)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 82 (377)
|+++.|+.+|+++.+.....++...+..+..++.+.|++++|+++++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555555443321011222333344444445555555554444
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0025 Score=51.70 Aligned_cols=178 Identities=11% Similarity=0.115 Sum_probs=100.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLIT---FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (377)
....+...|++++|.+.|+.+...-..+ ... .-.++.++.+.+++++|...+++..+.........|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3344556677777777777776643221 222 134556667777777777777777765422222333333333321
Q ss_pred --c---------------CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 042154 246 --E---------------KQ---TKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKL 305 (377)
Q Consensus 246 --~---------------~~---~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (377)
. .+ ..+|+..|+++++. -|+. .-..+|...+....... ...--.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 0 11 23444555555543 2332 22334433333000000 001114
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSER--CLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
+.+.|.+.|.+..|..-++.+++.- .+........++.+|...|..++|.++......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 5667899999999999999999862 233445677888999999999999988776543
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=1e-05 Score=41.97 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKE 263 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 263 (377)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=0.00026 Score=47.78 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247 (377)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (377)
.+...+...|++++|...++.+.+... .+...+..+...+...+++++|.+.++...... +.+...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 334444455555555555555544321 122344444555555555555555555554433 122234444555555555
Q ss_pred CHHHHHHHHHHHHh
Q 042154 248 QTKKALELVGEMRS 261 (377)
Q Consensus 248 ~~~~a~~~~~~~~~ 261 (377)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555443
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.4e-05 Score=41.48 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=17.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.94 E-value=0.00057 Score=56.88 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLG-FYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
.+|..+++...+.+..+.|..+|.++.+.+. .+..+|...... |...++.+.|.++|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666666666677777777777764321 233334433333 22244555577777766654 33455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDV---FTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+...|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66677777777777776654 22222 355666655556666666666655
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.93 E-value=2.7e-05 Score=51.65 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=7.9
Q ss_pred HHHHHHhCCChhHHHHHHHh
Q 042154 133 LLGACVNSKKFDEVDGLFKD 152 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~ 152 (377)
+..+|.+.|++++|+.++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33334444444444444333
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.93 E-value=0.00027 Score=58.77 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=75.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHH-HHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQR-LANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
.|..+++...+.+..+.|..+|..+.+.+.+ +..+|...... +...++.+.|.++|+...+. ...+..++...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5666777777777777777777777654422 33334333333 22245555677777776665 34445555566777
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccH---HHHHHHHHHHHhCCChhHHHHHHHhchh
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTV---LSFNALLGACVNSKKFDEVDGLFKDLPH 155 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (377)
+.+.|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776654 22222 3566666666666666666666665543
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.91 E-value=0.00038 Score=53.58 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=57.8
Q ss_pred CcCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 042154 160 EPDLVSYNTIIKAFVD-----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVR 234 (377)
Q Consensus 160 ~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (377)
..+..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3455566666666543 35666666777777777777777777777777654 2221 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
....+ .- .-.+-+-|++++++|...|+.||..++..+++.|.+.+.
T Consensus 108 fQ~~F-~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEF-MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHh-cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11100 00 112334456666666666666666666666666655543
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.91 E-value=0.0013 Score=50.46 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 130 FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
+..+...+...|++++|...|++......-.++ ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444445555555544444322000111 12344444444444444444444444444
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00037 Score=62.85 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
+...|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4455555555555566777777777666532 456666666666777777777777777666654
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.88 E-value=0.00038 Score=51.05 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042154 59 IYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV 138 (377)
Q Consensus 59 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (377)
..-.+...+...|++++|.++|+-+....+.....++ .|.-++-..|++++|+..|....... +-++..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~-gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWF-RLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444555556667777777777766666544444445 36666666777777777777666555 345666666666677
Q ss_pred hCCChhHHHHHHHhchhh
Q 042154 139 NSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~ 156 (377)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777766665544
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=5.2e-05 Score=48.09 Aligned_cols=66 Identities=17% Similarity=0.023 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhhccCC
Q 042154 299 NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL-RVEEAKELVELGKTNS 365 (377)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 365 (377)
++..|..+...+...|++++|+..|++.++.... ++..|..+..++.+.| ++++|.+.++++.+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4567888888899999999999999999887544 6678888888999999 6999999998887644
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00024 Score=54.53 Aligned_cols=65 Identities=6% Similarity=-0.065 Sum_probs=29.6
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccc-hhhHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN-TGIYTGTVQRLANAKRFRWIEEILEHQKQY 86 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 86 (377)
..+..+...+...|++++|+..|++..+...-+++ ...+..+...+.+.|++++|...+++....
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444455555555555555554432211111 234444445555555555555555544443
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.85 E-value=0.0002 Score=61.79 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=72.4
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccC
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAA 106 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (377)
-...+...|++++|++.|+++.+.. +.+...|..+..++...|++++|+..++++....+..... +..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-YLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHhC
Confidence 3456677888999999998888765 5667788888888888889999988888888775443333 446788888888
Q ss_pred CHHHHHHHHHhcCCCC
Q 042154 107 MFENARKVFDEMPGRN 122 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~ 122 (377)
++++|...|++..+.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888887765
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00059 Score=52.13 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMNVRP--NVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444321111 112344444444444444444444444443
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00091 Score=57.77 Aligned_cols=93 Identities=9% Similarity=-0.034 Sum_probs=70.9
Q ss_pred HHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC
Q 042154 133 LLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 212 (377)
-...+...|++++|+..|++.++. .+-+...|..+..+|.+.|++++|+..++++.+... .+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 345567788888888888888753 123455777777888888888888888888887643 36667778888888888
Q ss_pred CHHHHHHHHHHHHhCC
Q 042154 213 RFADAEKIWETMVNMN 228 (377)
Q Consensus 213 ~~~~a~~~~~~~~~~~ 228 (377)
++++|...|++..+.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888888764
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.00062 Score=52.03 Aligned_cols=94 Identities=15% Similarity=0.013 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRL--DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARL 240 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (377)
...|..+...+...|++++|+..|+........+ ...++..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3345555666666677777777777666542221 22456666667777777777777777666542 22233444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 042154 241 DGLA-------IEKQTKKALELVG 257 (377)
Q Consensus 241 ~~~~-------~~~~~~~a~~~~~ 257 (377)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 5555554444333
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.01 Score=48.19 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=97.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhcCCCccch--hHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 042154 62 GTVQRLANAKRFRWIEEILEHQKQYKDISKEGF--TARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN 139 (377)
Q Consensus 62 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (377)
.....+...|++++|++.|+.+...-+.+.... .-.++.++.+.+++++|...|++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344445667888888888888776543332211 013667778888888888888887765421122233333333221
Q ss_pred --CC---------------C---hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 042154 140 --SK---------------K---FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199 (377)
Q Consensus 140 --~~---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (377)
.+ | ..+|+..|+++.++ -|+ ..-..+|...+..+... =..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHH----HHH
Confidence 11 1 12344444444443 233 22234444433333321 011
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNM--NVRPNVRSYNARLDGLAIEKQTKKALELVGEMR 260 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (377)
.--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124666777788888888888877754 122234455667788888888888877766554
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00036 Score=53.69 Aligned_cols=101 Identities=21% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCHHhHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 042154 196 LDLITFNTLLLGFYS-----NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT 270 (377)
Q Consensus 196 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 270 (377)
.+-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-
Confidence 467777777777764 46777777888888888888888888888887743 3221 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCC
Q 042154 271 FYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGD 315 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~ 315 (377)
+-.+..- .-.+-+-|+++++ ..|+.||..++..++..+++.+.
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 1234566777777 89999999999999999987764
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=0.0044 Score=51.80 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-----CCHH-HHHH
Q 042154 171 KAFVDK-GSLDSANTLLYEMEKK----GIR-LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR-----PNVR-SYNA 238 (377)
Q Consensus 171 ~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~ 238 (377)
..|... |+++.|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|++....... .+.. .+-.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344454 6777777777665531 210 01234555666677777777777777766653221 1111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
.+-++...|++..|.+.+++....
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233444556666677776666543
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=8.2e-05 Score=46.52 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
+...+.+.|++++|.+.|+++++..+. +...+..+..++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445677888888888888888876533 666777788888888888888888888766543
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00058 Score=55.06 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=68.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 042154 207 GFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLE 285 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~ 285 (377)
-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3556677888888888777764 345666777777788888888877777776663 333 457777777888888888
Q ss_pred HHHHHHH-hcCCCCCHHHHHHHH
Q 042154 286 EAKRWYN-KSGCGMNKAIFKLLV 307 (377)
Q Consensus 286 ~a~~~~~-~~~~~~~~~~~~~l~ 307 (377)
+|.+.|+ ...+.|+-.+|..=+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 8887777 666677666654433
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0036 Score=56.70 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=87.5
Q ss_pred CCCCHHhHHHHHHHHHc--CC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 042154 194 IRLDLITFNTLLLGFYS--NG---RFADAEKIWETMVNMNVRPN-VRSYNARLDGLAIEK--------QTKKALELVGEM 259 (377)
Q Consensus 194 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 259 (377)
.+.+...|...+.+... .+ +...|..+|++..+.. |+ ...|..+..++.... +...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45567777777776443 22 3668888888888764 44 344444433332221 123334444443
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh
Q 042154 260 RSK-EINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAP 337 (377)
Q Consensus 260 ~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 337 (377)
... ....+...|..+.-.....|++++|...++ .....|+...|..+...+...|+.++|.+.++++... .|...+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 332 123345666666666666788888888888 5555677777888888888888888888888888774 344444
Q ss_pred H
Q 042154 338 L 338 (377)
Q Consensus 338 ~ 338 (377)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0055 Score=51.84 Aligned_cols=258 Identities=11% Similarity=-0.002 Sum_probs=142.5
Q ss_pred HHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhH
Q 042154 66 RLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDE 145 (377)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (377)
.+.+..++..|+..+..+.+..+.. ...|..-+..+...|++++|.--.+.-.+.. +-........-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 4455667777888777777765444 4444445566666777777765554433321 0011122222233333333333
Q ss_pred HHHHHH---------------hchhhcCCCcCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH--H
Q 042154 146 VDGLFK---------------DLPHKLGIEPDLVSYNTII-KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLL--G 207 (377)
Q Consensus 146 a~~~~~---------------~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~ 207 (377)
|.+.++ .......-+|.-.+|..+- .++...|+.++|.+.-....+.+.. +. +..+++ +
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~--~al~vrg~~ 212 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NA--EALYVRGLC 212 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hh--HHHHhcccc
Confidence 332222 2221111123333444443 4556778888888877777665322 22 333333 3
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HH----------HHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH
Q 042154 208 FYSNGRFADAEKIWETMVNMNVRPNVRSYNAR---LD----------GLAIEKQTKKALELVGEMRSK---EINPDVFTF 271 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~----------~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~ 271 (377)
+.-.++.+.+..-|++.+..+ |+...--.+ .. -..+.|++.+|.+.|.+.+.. ...|+...|
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 445667888888888888765 444332221 11 124667888888888887764 334555666
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 272 YALIKGFVNEGNLEEAKRWYN-KSGCGMNK-AIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.....+..+.|+.++|+.--+ ...+.+.. ..|..-..++...++|++|.+-++...+..
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666667777888888877666 43333321 233333446667778888888888777653
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.00013 Score=46.11 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=34.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 311 CEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 311 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
.+.|++++|+++|+++.+..+. +......+..+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3556677777777776665443 555555666777777777777777776665544
No 185
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.61 E-value=0.036 Score=47.46 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 167 NTIIKAFVDKGSLDSANTLLYEMEKKG---IRLDLITFNTLLLGFYS---NGRFADAEKIWETMVNMNVRPNVRSYNARL 240 (377)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (377)
..++-+|....+++...++.+.+.... +..+..+-.....++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344456888888888888888887652 22233333445556666 788889998888866555567777887777
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---H----hcC---CC
Q 042154 241 DGLAI---------EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN-LE---EAKRWY---N----KSG---CG 297 (377)
Q Consensus 241 ~~~~~---------~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~---~----~~~---~~ 297 (377)
+.|-. ....++|+..|.+.-+. .|+...--.++..+...|. .+ +..++- . +.| -.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 66532 22367788888776653 3554333223333333332 11 222222 1 222 23
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 298 MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
.+...+..++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45566778888899999999999999999876
No 186
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.034 Score=47.02 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 203 TLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
.-+.-+...|+...|.++-.+. .+ |+...|-..+.+++..++|++...+-.. . -++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 3344444455555555543333 12 5555555556666666666555443322 1 12244555555555556
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 042154 283 NLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNL 322 (377)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 322 (377)
+..+|..++... .+..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~-------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI-------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC-------ChHHHHHHHHHCCCHHHHHHH
Confidence 655555554431 112334455555555555544
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.59 E-value=0.00023 Score=45.07 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=45.8
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC-ChHHHHHHHHHhhhh
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK-RFRWIEEILEHQKQY 86 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 86 (377)
++..|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34566777777777777777777777777665 556667777777777777 677777777766554
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00061 Score=54.96 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=77.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh
Q 042154 65 QRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144 (377)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (377)
.-+.+.+++.+|+..|.++.... +.+..+|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 44567888888888888888764 3455566667888888888888888887777765 334668888888888888888
Q ss_pred HHHHHHHhchhhcCCCcCHHHHHHHHHHH
Q 042154 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAF 173 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 173 (377)
+|++.|++.+ .+.|+..+|-.=++..
T Consensus 167 ~A~~aykKaL---eldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKAL---ELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhh---ccCCCcHHHHHHHHHH
Confidence 8888888776 5678777776666544
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.017 Score=43.40 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=81.8
Q ss_pred CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH
Q 042154 195 RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK---EINPDVFTF 271 (377)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~ 271 (377)
.|+...-..|..++...|+..+|...|++...--...|....-.+.++....+++..|...++++-+. +-.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 46666666677777777777777777777765444556666666777777777777777777776654 222332 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 272 YALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
..+...+...|....|+..|+ ....-|+...-......+.+.|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 345566667777777777777 444556655544445556666766655544333
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.58 E-value=0.026 Score=48.24 Aligned_cols=173 Identities=14% Similarity=0.049 Sum_probs=111.7
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042154 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMN---VRPNVRSYNARLDGLAI---EKQTKKALELVGEMRSKEINPDVFTF 271 (377)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~ 271 (377)
..+...++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|+.++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344456667999999999999999998751 11222333344556666 89999999999997666667888899
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCC-hH---HHHHHH----HHHHhcC---
Q 042154 272 YALIKGFVN---------EGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGD-LD---FAFNLC----KRTFSER--- 330 (377)
Q Consensus 272 ~~l~~~~~~---------~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~~--- 330 (377)
..+...|-. ....++|...+. ...+.|+...=-.++..+...|. .+ +..++- ....+.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 888877642 234778888888 44444554321112222222232 21 222332 1222333
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeee
Q 042154 331 CLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYN 370 (377)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 370 (377)
...+-..+..++.+..-.|+.++|.+..++|.+..++.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 2335556678899999999999999999999988776664
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00027 Score=44.58 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=7.5
Q ss_pred HHHHHHccCCHHHHHHHHHhc
Q 042154 98 LIALYGKAAMFENARKVFDEM 118 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~ 118 (377)
++.+|.+.|++++|..+++.+
T Consensus 31 la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.006 Score=43.14 Aligned_cols=88 Identities=13% Similarity=0.014 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC----HHHHHHHHHHHHh
Q 042154 240 LDGLAIEKQTKKALELVGEMRSKEINPD--VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN----KAIFKLLVPFVCE 312 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~----~~~~~~l~~~~~~ 312 (377)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++ ...-.|+ ......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4455566666666666666666655433 2345556666666677777776666 1111222 1222222335566
Q ss_pred cCChHHHHHHHHHHH
Q 042154 313 KGDLDFAFNLCKRTF 327 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~ 327 (377)
.|+.++|+..+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 677777766665444
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00042 Score=43.21 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK 87 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 87 (377)
+...+.+.|++++|+..|+.+.+.. |-+...+..+..++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566778888888888888888765 5577788888888888888888888888876653
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.0046 Score=45.74 Aligned_cols=83 Identities=6% Similarity=-0.193 Sum_probs=49.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 042154 244 AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 320 (377)
...|++++|..+|.-+...+. -+..-+..|..++-..+++++|...+. ... .-|+..+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 356777777777776665432 244445566666666777777777776 111 123333344556667777777777
Q ss_pred HHHHHHHh
Q 042154 321 NLCKRTFS 328 (377)
Q Consensus 321 ~~~~~~~~ 328 (377)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77766665
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.015 Score=41.12 Aligned_cols=88 Identities=19% Similarity=0.075 Sum_probs=43.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 042154 171 KAFVDKGSLDSANTLLYEMEKKGIRLD--LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN----VRSYNARLDGLA 244 (377)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 244 (377)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666665554432 2234444555555666666666666555432 22 111122233444
Q ss_pred hcCCHHHHHHHHHHHH
Q 042154 245 IEKQTKKALELVGEMR 260 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~ 260 (377)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665554444
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.052 Score=45.93 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEK 313 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (377)
.+.+..+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++.... ..+.-|..++.+|.+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~sk---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKSK---KSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhCC---CCCCChHHHHHHHHHC
Confidence 455666777788999999999887774 478889999999999999999988876532 2346788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
|+..+|..+..+ ++ +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999988866 22 24456677778888777655
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.002 Score=54.43 Aligned_cols=283 Identities=14% Similarity=0.064 Sum_probs=144.4
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccc----hhhHHHHHHHHHhcCChHHHHHHHHHhhh----hcCCC-ccchhHHHH
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTN----TGIYTGTVQRLANAKRFRWIEEILEHQKQ----YKDIS-KEGFTARLI 99 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~ 99 (377)
.-+|+.|+....+.+|+...+.| ..| ..+|+.|..+|.-.+++++|+++...=.. .|... .......|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45889999999999999998877 333 34577777788888889998887643211 11000 001111244
Q ss_pred HHHHccCCHHHHHHHHHh----cCCCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH
Q 042154 100 ALYGKAAMFENARKVFDE----MPGRNC-EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV 174 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (377)
..+--.|.+++|.-.-.+ ..+.|- .....++..+...|...|+.-... -.+..|-.++.++
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~-----~pee~g~f~~ev~--------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE-----APEEKGAFNAEVT--------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC-----ChhhcccccHHHH---------
Confidence 445555666665543222 111110 011234444555555555421100 0000011121111
Q ss_pred HcCCHHHHHHHHHHH----HHCCC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHH
Q 042154 175 DKGSLDSANTLLYEM----EKKGI-RLDLITFNTLLLGFYSNGRFADAEKIWETMV----NMNVR-PNVRSYNARLDGLA 244 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~ 244 (377)
..++.|.++|.+= .+.|- ...-..|..|.+.|.-.|+++.|+...+.-+ +.|-+ .....+..+..++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 0122233333221 11110 1123456667777777788888877655332 22311 22345667777777
Q ss_pred hcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCC-CCCHHHHHHHHHHHH
Q 042154 245 IEKQTKKALELVGEMRSK----EIN-PDVFTFYALIKGFVNEGNLEEAKRWYN-------KSGC-GMNKAIFKLLVPFVC 311 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~----g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~l~~~~~ 311 (377)
-.|+++.|.+.|+.-... |-+ ....+..+|...|.-..++++|+.++. ..+- .-....+-+|..++.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 778888887777664322 211 123344456666666666777776666 1111 112345556666666
Q ss_pred hcCChHHHHHHHHHHHhc
Q 042154 312 EKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 312 ~~g~~~~a~~~~~~~~~~ 329 (377)
..|.-++|+.+...-++.
T Consensus 327 alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 666667776666655554
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0049 Score=50.10 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=75.5
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 042154 160 EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG---RFADAEKIWETMVNMNVRPNVRSY 236 (377)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 236 (377)
+-|...|-.|..+|...|+.+.|..-|....+.. .++...+..+..++.... .-.++..+|+++...+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466788888888888888888888888888763 346666766766654432 4567888888888765 3466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 237 NARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777888888888888888888886
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.40 E-value=0.016 Score=45.76 Aligned_cols=171 Identities=17% Similarity=0.175 Sum_probs=83.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 042154 170 IKAFVDKGSLDSANTLLYEMEKKGI--RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE- 246 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 246 (377)
...+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...+++..+.-.......+...+.+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3444556666666666666654311 1112334445556666666666666666665432111112222222222111
Q ss_pred ------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 042154 247 ------------KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKG 314 (377)
Q Consensus 247 ------------~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 314 (377)
+...+|...| ..++.-|-.+.-..+|...+....... ...--.+.+.|.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT
T ss_pred hCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc
Confidence 1122333333 344444444555555555444110000 011112567789999
Q ss_pred ChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCCHHHHHH
Q 042154 315 DLDFAFNLCKRTFSERCL--VDQAPLQLVVDRLAKELRVEEAKE 356 (377)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 356 (377)
.+..|..-++.+++.-+. ........++.+|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999886222 112245677889999998885543
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0025 Score=51.74 Aligned_cols=129 Identities=9% Similarity=0.036 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHcc---CCHHHHHH
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKA---AMFENARK 113 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~ 113 (377)
++..+.-++.-.+.+ |-|...|-.|...|...|+++.|...|.+..+..+.. ...+..+...+... ....++..
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-PEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCcccHHHHH
Confidence 333334444444444 6788899999999999999999999999988875433 33333455544333 34677889
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHH
Q 042154 114 VFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (377)
+|+++.... +-++.+...+...+...|++.+|...++.|.+. .|....+..++..
T Consensus 215 ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~---lp~~~~rr~~ie~ 269 (287)
T COG4235 215 LLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL---LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---CCCCCchHHHHHH
Confidence 999988876 456777777888899999999999999998753 3443445555543
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.00067 Score=43.46 Aligned_cols=58 Identities=21% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 308 PFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 308 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
..|.+.+++++|.+++++++..++. ++..+.....++.+.|++++|.+.++.+.+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3456666666666666666665433 555555566666666666666666666665554
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.012 Score=46.90 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=70.3
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHH-----HH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI-----IK 171 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~ 171 (377)
.++.++...+.+.-...++.++.+...+.++.....+++.-.+.||.+.|...|+...+. .-..|..+.+.+ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhh
Confidence 456666666666666666666666554555666666666666666666666666655332 222232222222 22
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 172 AFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
.+.-.+++..|...+.+....+.. |....|.-.-+..-.|+..+|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455666666666666554322 4444443333333446666777777766664
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.14 Score=46.87 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYE 188 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (377)
+....-.+..++...|..++|.+.|-+.. .|. ..+..|...++|.+|.++-+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 44555666777777777777776664431 121 233556666667666665544
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.28 E-value=0.0081 Score=42.92 Aligned_cols=101 Identities=8% Similarity=-0.045 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA 136 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (377)
..++..++.++++.|+.+....+++..-... .+...- .+. .-......|+.....+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCccc---------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456666666666666666666665432211 111000 000 12233456888889999999
Q ss_pred HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
|+.+|++..|+++.+...+.++++.+..+|..|++-+...-
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988888888888888888887654433
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.1 Score=47.25 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHH-----------
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAI----------- 302 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~----------- 302 (377)
+...+..-+-+...+..|-++|..|-+ ...+++.....+++++|..+-+ .....|++..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 333344444455556666677766643 2245666677777777777777 3334444321
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
|.-.-++|.+.|+-.+|.++++++...
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 112223566777777777777776554
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.26 E-value=0.064 Score=42.37 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRN--CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
....+...|++++|.+.|+.+.... -+-...+.-.++.++.+.|+++.|...++++.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555666666555554432 0111223334455555555555555555555544
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.005 Score=50.42 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC----CHHHHH
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKEINPD----VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM----NKAIFK 304 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~----~~~~~~ 304 (377)
..|...+..+.+.|++++|...|+.+.+. .|+ ...+..+..+|...|++++|...|+ -....| ....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34554444445567777777777777764 233 2355566677777777777777777 111111 233444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
.+..++...|+.++|.++|+++++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777664
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.014 Score=47.92 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHhHHH
Q 042154 130 FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL----VSYNTIIKAFVDKGSLDSANTLLYEMEKKGI--RLDLITFNT 203 (377)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 203 (377)
|...+..+.+.|++++|+..|+.+... -|+. .++..+..+|...|++++|...|+.+.+.-. +.....+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 333333334455666666666555543 2221 2444555555556666666666655554311 112223333
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 204 LLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
+..++...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555543
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.16 E-value=0.001 Score=43.32 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSER--CL---VD-QAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
.+++.+...|...|++++|+..|++.++.. .. |+ ..++..+..++...|++++|.+.++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356777777888888888888887776541 11 11 3356677778888888888888887764
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.029 Score=50.46 Aligned_cols=178 Identities=17% Similarity=0.043 Sum_probs=115.1
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHHh----cCCHHHH
Q 042154 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN-VRPNV-----RSYNARLDGLAI----EKQTKKA 252 (377)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a 252 (377)
.-+|.-+... ++| .+..++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4444444444 232 24556777777899999999988876543 22111 224444444443 4567889
Q ss_pred HHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHh-cC----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 253 LELVGEMRSKEINPDVFTFY-ALIKGFVNEGNLEEAKRWYNK-SG----C-GMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 253 ~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~-~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
.+++..+.+. -|+...|. .-.+.+...|++++|.+.++. .. . ......+--+..++.-.++|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999999885 56765554 334456678999999999991 11 1 11223444567788899999999999999
Q ss_pred HHhcCCCCChhhHHHHH-HHHHhcCCH-------HHHHHHHHhhccCCce
Q 042154 326 TFSERCLVDQAPLQLVV-DRLAKELRV-------EEAKELVELGKTNSYC 367 (377)
Q Consensus 326 ~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~~~~~ 367 (377)
+.+..-- +..+|..+. .++...|+. ++|.+++.++......
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 9986432 444554433 355668888 8899999888765443
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.016 Score=43.04 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS-----KEINPDVFT 270 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~p~~~~ 270 (377)
...++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555555666666666666665543 34555566666666666666666666555432 255555544
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.004 Score=46.29 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV-----NMNVRPNVRS 235 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 235 (377)
...++..+...|+++.|..+.+.+....+ .+...|..+|.+|...|+...|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444455556666666666666665532 255566666666666666666666665553 2355555444
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.10 E-value=0.025 Score=50.17 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=74.5
Q ss_pred HhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHH
Q 042154 68 ANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVD 147 (377)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (377)
.-.++++.+.++.+.-.-.+..| ....+.++..+-+.|-.+.|+++... + ..-.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHH
Confidence 34555666555543211111112 33344566666666666666655322 1 11234445666666666
Q ss_pred HHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 148 GLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
++.++. .+...|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.++..++.+.....
T Consensus 339 ~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 339 EIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 554433 1444666666666666666666666655442 445555566666666666666555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 228 NVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
| -++....++...|+.++..+++.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 133344444455666665555544
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.10 E-value=0.074 Score=40.18 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=83.7
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHH
Q 042154 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN---VRPNVR 234 (377)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 234 (377)
...|++..-..+..++...|+..+|...|++...--+..|......+.++....+++..|...++.+.+.. -.||
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 44666666666777777777777777777777765555667777777777777777777777777776543 1232
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
+.-.+.+.+...|.+..|..-|+..... -|+...-......+.++|+.+++..-+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 3344566777777777777777777664 455444444444556666665555433
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.04 E-value=0.038 Score=39.02 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=83.7
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHH
Q 042154 209 YSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVF---TFYALIKGFVNEGNLE 285 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~~~~~ 285 (377)
.-.|..++..++..+.... .+..-+|-+|--....-+-+-..+.++.+-+. .|.. ..-.++.+|...|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n--- 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRN--- 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhc---
Confidence 3467778888888777764 24555666655555555555555555554332 2221 1223444444433
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 286 EAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
.+.......+..+...|+-+.-.++++++.+ +-.+++...-.+..+|.+.|+..++.++++++.++|
T Consensus 84 ------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 84 ------------KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2345566678888999999999999999876 356788888899999999999999999999999988
Q ss_pred ce
Q 042154 366 YC 367 (377)
Q Consensus 366 ~~ 367 (377)
..
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.02 E-value=0.016 Score=41.42 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHH
Q 042154 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFV 310 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~ 310 (377)
|..++..++.++++.|+.+....+++..-. +.++...- .+. +. .....|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 456777788888888888877777765432 11111000 000 11 333456666666666666
Q ss_pred HhcCChHHHHHHHHHHHhc-CCCCChhhHHHHHH
Q 042154 311 CEKGDLDFAFNLCKRTFSE-RCLVDQAPLQLVVD 343 (377)
Q Consensus 311 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 343 (377)
+..|++..|+++.+...+. +++.+..+|..|+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666666666665554 34444556665555
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.0021 Score=41.07 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK 87 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 87 (377)
..+.+.+++++|++.++.+...+ |.+...+.....++...|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45666777777777777776654 5566666667777777777777777777766654
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.14 Score=40.98 Aligned_cols=141 Identities=9% Similarity=-0.043 Sum_probs=98.7
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----
Q 042154 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYA----- 273 (377)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~----- 273 (377)
.+.+.++..+...|.+.-....+.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777888889999999999999887667788888899999999999999999998776533333333333
Q ss_pred HHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042154 274 LIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLV 341 (377)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (377)
....|.-++++..|...+. -.....++...|.-.-++.-.|+...|++.++.|... .|.+.+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3334556778888888876 2222334444444444556678999999999999885 4444444433
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0012 Score=42.87 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=38.5
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccC----CCCccc-hhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDL----GRFRTN-TGIYTGTVQRLANAKRFRWIEEILEHQK 84 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 84 (377)
..+++.+...|...|++++|++.|++..+. |.-.|+ ..++..+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777777777777777777666521 111122 4456666666667777777777666554
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.91 E-value=0.025 Score=41.98 Aligned_cols=87 Identities=11% Similarity=-0.021 Sum_probs=54.2
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN 110 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (377)
+...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|+..|............+.| ....++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f-~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF-FTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc-hHHHHHHHhCCHHH
Confidence 445677777777777666544 344445556666666677777777777665554333333333 26777777777777
Q ss_pred HHHHHHhcCC
Q 042154 111 ARKVFDEMPG 120 (377)
Q Consensus 111 A~~~~~~~~~ 120 (377)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.88 E-value=0.019 Score=49.85 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccch---hhHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNT---GIYTGTVQRLANAKRFRWIEEILEHQKQY 86 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 86 (377)
.++..++.+..+|.+.|++++|+..|++..+.+ |.+. .+|..+..+|...|+.++|++.++++...
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999988764 3333 35899999999999999999999998875
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.063 Score=43.76 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF 143 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (377)
.......|++.+|..+|............... .++.+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~-~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKL-LLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHH-HHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33457789999999999998887666655555 69999999999999999999987654222333333456666677666
Q ss_pred hHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 042154 144 DEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK--GIRLDLITFNTLLLGFYSNGRFADAEK 219 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (377)
.+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|.-+.+..
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHH
Confidence 666666655533 35 6666777888899999999999888777654 333 56677778888777774443333
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.82 E-value=0.29 Score=42.50 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHH-HHHHHHH
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKE-INPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIF-KLLVPFV 310 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~-~~l~~~~ 310 (377)
..|...+.+-.+..-.+.|..+|-++.+.| +.+++..+++++..++ +|+...|.++|+ .....||...| .-.+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345556666667777899999999999988 5678888999988665 788999999999 44445666554 4566778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 311 CEKGDLDFAFNLCKRTFSERCLVD--QAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 311 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
...++-+.|..+|+..+.. +..+ ..+|..+|+.-..-|+...+..+=+++.
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 8899999999999976654 2223 4588889988888898877766555543
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.80 E-value=0.3 Score=42.43 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=51.9
Q ss_pred hcCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 293 KSGCGM----NKAIFKLLVPF--VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 293 ~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
..|+.| +...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|.+++....-
T Consensus 449 e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 449 EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 555555 23344555443 5678888888776666555 788999999999999999999999999998765
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.79 E-value=0.09 Score=46.74 Aligned_cols=159 Identities=8% Similarity=0.097 Sum_probs=109.5
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCH
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMF 108 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (377)
....-+++++++.++.+.-.-.+.+| ....+.++..+-+.|-.+.|+++...-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 44456888999877775221111122 3457889999999999999999854321 345667789999
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 042154 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYE 188 (377)
Q Consensus 109 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (377)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|.-.|+.+...++.+.
T Consensus 335 ~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHH
Confidence 99998766553 677999999999999999999999998843 67788888899999998888888
Q ss_pred HHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 042154 189 MEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223 (377)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (377)
....|- ++....++.-.|+.+++.+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 877642 55566666667888888877754
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.70 E-value=0.33 Score=41.39 Aligned_cols=295 Identities=15% Similarity=0.108 Sum_probs=145.2
Q ss_pred HHHHHHHHhhh--cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHH--hcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 23 FIGSVIRGIYK--ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLA--NAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 23 ~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
.|..|-.++.. .|+-..|.++-.+..+. +..|....-.++.+-. -.|+.+.|.+-|+.|.......-..+- .|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLR-gL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLR-GL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHH-HH
Confidence 34444444443 45555665555444321 2334444444444332 357777777777777664322222222 23
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHH--HHHHHHHHHH-
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVS--YNTIIKAFVD- 175 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~- 175 (377)
.-..-+.|+.+.|.++-+..-..- +.-...+...+...+..|+|+.|+++++.-....-+.++..- -..++.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333345677777777666655443 223566777777777788888888777766554445555431 2222222111
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 176 --KGSLDSANTLLYEMEKKGIRLDLIT-FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA 252 (377)
Q Consensus 176 --~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (377)
..+...|...-.+..+. .|+..- -..-..++.+.|+..++-.+++.+-+....|+ .+.. ..+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cH
Confidence 12344444444333332 333221 22234456666666666666666665543333 2211 11223333 22
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 042154 253 LELVGEMRSK-EINPD-VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVC-EKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 253 ~~~~~~~~~~-g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 328 (377)
..-+++..+. .++|| ......+..+-...|++..|..--+ .....|....|..|.+.-. ..||-.++.+.+.+.++
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2222222211 12232 3444455555556666666665555 4444555666655555433 33666666666666655
Q ss_pred c
Q 042154 329 E 329 (377)
Q Consensus 329 ~ 329 (377)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.65 E-value=0.31 Score=40.65 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCh---hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 129 SFNALLGACVNSKKF---DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
++..++.+|...+.. ++|..+++.+....+-+ +..+..-++.+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455566666666653 34555555554432322 233444455555577777777777777765
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.29 Score=40.07 Aligned_cols=184 Identities=9% Similarity=0.013 Sum_probs=121.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh
Q 042154 65 QRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144 (377)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (377)
+.+.....-+...+++++.... +....+ .-.......|++.+|..+|....... +-+...-..+..+|...|+.+
T Consensus 111 dgF~G~qPesqlr~~ld~~~~~---~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e 185 (304)
T COG3118 111 DGFQGAQPESQLRQFLDKVLPA---EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVE 185 (304)
T ss_pred cccCCCCcHHHHHHHHHHhcCh---HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChH
Confidence 3333333334555555554433 223333 35566778999999999999887754 334667778899999999999
Q ss_pred HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
.|..++..+..+ --.........-|..+.+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+
T Consensus 186 ~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 186 AAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998654 11112222334456666666666666666666554 337778888999999999999999888777
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 225 VNMN-VRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 225 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
.+++ -.-|...-..++..+.-.|.-+.+...+
T Consensus 263 l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 263 LRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6542 1235566777888887777554444333
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.55 E-value=0.039 Score=44.52 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ 248 (377)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (377)
+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4456666777777777776666666666665553
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.013 Score=50.76 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 042154 266 PDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKA----IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340 (377)
Q Consensus 266 p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (377)
.+...++.+..+|...|++++|+..++ ...+.|+.. +|..+..+|...|+.++|++.++++++.+ .+ .|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHH
Confidence 356788899999999999999999999 566677643 58889999999999999999999998852 11 2321
Q ss_pred HHH--HHHhcCCHHHHHHHHHhhccCCc
Q 042154 341 VVD--RLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 341 l~~--~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
+.. .+....+.++..++++.+.+-|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 11222334466667776666553
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.52 E-value=0.099 Score=37.03 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 042154 105 AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANT 184 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (377)
.|.+++..++..+.... .+..-+|-+|--....-+-+-..++++.+-+-+.+.+- .-...++.+++..|
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n------- 83 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN------- 83 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc-------
Confidence 45556666666555443 23444555555555555555555555554322111110 01111222222221
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042154 185 LLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264 (377)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 264 (377)
.+.......++.+...|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 84 -----------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 84 -----------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 123334445555556666666666666655422 34555555666666666666666666666665554
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.25 Score=44.61 Aligned_cols=164 Identities=11% Similarity=0.050 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccc------hhHHHHHHHHc----cCCHHHHHHHHHhcCCCCCCccHHH
Q 042154 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEG------FTARLIALYGK----AAMFENARKVFDEMPGRNCEQTVLS 129 (377)
Q Consensus 60 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 129 (377)
+..++....-.|+-+.+++.+.+..+.+.....- .|...+..++. ..+.+.|.++++.+.++- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 4567777788888888888888776643222211 12223333332 457888999999988864 55555
Q ss_pred HHH-HHHHHHhCCChhHHHHHHHhchhhcCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-
Q 042154 130 FNA-LLGACVNSKKFDEVDGLFKDLPHKLGIEP--DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL- 205 (377)
Q Consensus 130 ~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 205 (377)
|.. -.+.+...|++++|++.|++......--+ ....+--+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 543 35567778999999999986543111111 22345555667888899999999999998753 22333333332
Q ss_pred HHHHcCCCH-------HHHHHHHHHHHh
Q 042154 206 LGFYSNGRF-------ADAEKIWETMVN 226 (377)
Q Consensus 206 ~~~~~~~~~-------~~a~~~~~~~~~ 226 (377)
.++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 234456666 888888887763
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.43 E-value=0.36 Score=38.73 Aligned_cols=76 Identities=5% Similarity=-0.050 Sum_probs=45.0
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCc-cchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHH
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFR-TNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYG 103 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (377)
+..-.+.|++++|.+.|+.+....... -...+.-.++.++-+.++++.|+...++..+.-+.....-|-..+.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 334456788888888888776543222 2344555666677777888888888877776643333333323444443
No 234
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.39 E-value=0.6 Score=42.57 Aligned_cols=195 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred HHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHH-----HHHHHHhCCChhHHHHH
Q 042154 75 WIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA-----LLGACVNSKKFDEVDGL 149 (377)
Q Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~ 149 (377)
+.+.-++++++.+..|+..+ +...++-.|.+.+|.++|.+--..+ .-...|+. ...-+...|+.++-..+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 34444556666665555433 4455666777777777776644322 11111111 12223344443333333
Q ss_pred HHhchh--hcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHCCC---CCCHHhHHHHHHHHHcCCCHHHHH
Q 042154 150 FKDLPH--KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY------EMEKKGI---RLDLITFNTLLLGFYSNGRFADAE 218 (377)
Q Consensus 150 ~~~~~~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 218 (377)
.++-.+ ..--+|. +....+...|+.++|..+.- -+.+-+. ..+..+...+...+.+...+..|-
T Consensus 693 ~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 222110 0011222 22344455676666655431 1111111 123445555555556666777888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 219 KIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
++|..|-.. ..+++.....+++++|..+-+..-+. .||+ |.-..+.++...++++|.+.|.
T Consensus 768 eIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 768 EIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred HHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHHHHHH
Confidence 888777542 24567777889999999888876553 3443 2223333344444444444444
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.27 Score=36.75 Aligned_cols=131 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH-HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHH---H
Q 042154 59 IYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA-RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNAL---L 134 (377)
Q Consensus 59 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~ 134 (377)
.|...++ +++.+..++|+.-|..+.+.|...-+.+-. .........|+...|...|+++-.....|-..-=.+- .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444443 344555555555555555544322221110 2333445556666666666665443322222100111 1
Q ss_pred HHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 135 GACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
-.+..+|.++......+.+... +.+-....-..|.-+-.+.|++.+|.++|..+..
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1244555666655555555332 3233333444555555566666666666665554
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.18 Score=47.12 Aligned_cols=244 Identities=13% Similarity=0.059 Sum_probs=118.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHH----HHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA----LLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (377)
.-+..+.+..-++-|..+-+.-.. +..+... ..+.+.+.|++++|...|-+... -+.|. .++.-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHH
Confidence 455666666666666665443321 2222222 23335566777777777665542 12222 23344
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA 252 (377)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (377)
|........-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+-+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44455556666667777777665 55556667777777777776666555444 2211 11233344555555556666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 042154 253 LELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332 (377)
Q Consensus 253 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 332 (377)
..+-..... .......+ +-..+++++|++++....+.--..+.+...+.+.. ..+++-.+++-+......+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~ 553 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILLE-HDPEETMKILIELITELNS 553 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCC
Confidence 555544332 22222322 33566777777777633321111222222222222 3345555554444443322
Q ss_pred CChhhHHHHH-----HHHHhcCCHHHHHHHHHhhccCC
Q 042154 333 VDQAPLQLVV-----DRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 333 ~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
++.......+ ....-.+.++.-...++.|.+..
T Consensus 554 ~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s 591 (933)
T KOG2114|consen 554 QGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEIS 591 (933)
T ss_pred CCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcC
Confidence 2222222111 12233455666666666554443
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.23 E-value=0.73 Score=40.18 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=103.9
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHH
Q 042154 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMN-VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT-FYAL 274 (377)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~~l 274 (377)
-..+|...++...+..-++.|..+|-++.+.+ +.+++..+++++..+ ..|+...|..+|+--... -||... ....
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567777888788888899999999999887 667888889888877 457888889998876554 344433 3556
Q ss_pred HHHHHhcCCHHHHHHHHH--hcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 275 IKGFVNEGNLEEAKRWYN--KSGCGMN--KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~--~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
+..+...++-+.|..+|+ ...+..+ ...|..+|.--..-|+...+..+-++|... .|...+.....+.|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 667778899999999998 2222222 467888888888889998888887777763 444444444444443
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.66 Score=41.02 Aligned_cols=165 Identities=15% Similarity=0.222 Sum_probs=83.6
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccc-hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHc
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTN-TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGK 104 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (377)
.++.-.-+..+++.-++.-+++.+.. |+ +..|..|.. -......++++++++..+.+... + -.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~---pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~----l---g~---- 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN---PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS----L---GK---- 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh----h---ch----
Confidence 34444445666666666666665533 33 233333322 23445778888888766643211 0 00
Q ss_pred cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 042154 105 AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANT 184 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (377)
....+..-..++.+..+...|-..+-..+..++.+.|+.++|++.++++.+.....-.......++.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00000000111112222222333344456666777788888888888876542211223366677788888888888888
Q ss_pred HHHHHHHCCCCC-CHHhHHHHHH
Q 042154 185 LLYEMEKKGIRL-DLITFNTLLL 206 (377)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~~l~~ 206 (377)
++.+..+...+. -...|+..+-
T Consensus 317 lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHH
Confidence 887765432221 2334555443
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.11 E-value=0.24 Score=41.67 Aligned_cols=52 Identities=15% Similarity=-0.050 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKEI-----NPDVFTFYALIKGFVNEGNLEEAKRW 290 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g~-----~p~~~~~~~l~~~~~~~~~~~~a~~~ 290 (377)
+..++...+.++++++.|+...+... .....++..|...|....|+++|.-+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhh
Confidence 33444444455555555554433210 11123445555555555555554433
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.11 E-value=0.35 Score=35.47 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=17.7
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN 69 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (377)
.++..+...+.+..+..+++.+...+ +.+...++.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHH
Confidence 34444444444444444444444333 1233344444444443
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.3 Score=40.71 Aligned_cols=153 Identities=15% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHcCCC
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK---GIRLDLITFNTLLLGFYSNGR 213 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 213 (377)
...+|+..+|-..++++.+ ..+.|...+.-.=.+|.-.|+.+.-...++++... +.+-.+..-..+..++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4457788888888888877 44667777777778888899888888888888754 222223333444555667888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK---EINPDVFTFYALIKGFVNEGNLEEAKRW 290 (377)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 290 (377)
+++|++.-++..+.+ +-|.-.-.+....+...|+..++.+...+-... +...-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999888888766 345566667777777888888888877664332 1111122333334455666888999999
Q ss_pred HH
Q 042154 291 YN 292 (377)
Q Consensus 291 ~~ 292 (377)
|+
T Consensus 270 yD 271 (491)
T KOG2610|consen 270 YD 271 (491)
T ss_pred HH
Confidence 88
No 242
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.10 E-value=0.046 Score=46.53 Aligned_cols=240 Identities=10% Similarity=0.006 Sum_probs=139.7
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcc----cCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhh----hhc--CCC
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSS----DLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQK----QYK--DIS 90 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~--~~~ 90 (377)
...|..|.++|.-.+++++|+++-..=. ..|.-.-.+..-..|...+--.|.+++|+-.-.+-. +.+ +..
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e 134 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE 134 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh
Confidence 4578888889999999999998643211 011001122233345555556677777765443322 222 223
Q ss_pred ccchhHHHHHHHHccCC--------------------HHHHHHHHHhcC----CCCC-CccHHHHHHHHHHHHhCCChhH
Q 042154 91 KEGFTARLIALYGKAAM--------------------FENARKVFDEMP----GRNC-EQTVLSFNALLGACVNSKKFDE 145 (377)
Q Consensus 91 ~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~ 145 (377)
...+|| +...|...|+ ++.|.+.|.+=. +.|- -.--.+|..|.+.|.-.|+++.
T Consensus 135 ~RAlYN-lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 135 SRALYN-LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hHHHhh-hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 345564 6777665543 233444444311 1110 0011245555555666778888
Q ss_pred HHHHHHhc---hhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHhHHHHHHHHHcCCCHHH
Q 042154 146 VDGLFKDL---PHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEK----KG-IRLDLITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 146 a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~ 216 (377)
|+..-+.- .+.+|-+. ....+..+..+++-.|+++.|.+.|+.... .| -.....+..+|.+.|.-..++++
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence 87665432 12233322 234677888888889999999888876542 22 12345667778888888888888
Q ss_pred HHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 217 AEKIWETMVNM----N-VRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 217 a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
|+.++.+-+.. + ..-....+-++..+|...|..++|+.+.+.-++
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88887654321 1 112446677788888888888888877665443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.23 Score=40.22 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH----hcCCCC-CHHHHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEI--NPDVFTFYALIKGFVNEGNLEEAKRWYN----KSGCGM-NKAIFKLLV 307 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~l~ 307 (377)
.|+.-+..+ +.|++..|...|...++... .-....+..|..++...|+++.|..+|. ..+-.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566555554 56667777777777776521 1123345567777777777777777776 222222 234556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 042154 308 PFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 308 ~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
.+..+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777777777777777777765
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.04 E-value=0.02 Score=32.21 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042154 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLV 341 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (377)
.++..+...|.+.|++++|+++|+++++..+. |+..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 35667788888888888888888888886543 55555444
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=1.3 Score=41.23 Aligned_cols=318 Identities=15% Similarity=0.100 Sum_probs=176.1
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCC--hHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 24 IGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKR--FRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 24 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
...+|+-+...+.+..|+++-+++...- ... ...|......+.+..+ -+++.+..++-.+....+...+. .+++.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~-~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYA-AIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCcc-ccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHH-HHHHH
Confidence 3456677778888899999988885322 111 4566666666665532 22333333222222223444444 56777
Q ss_pred HHccCCHHHHHHHHHhcCCCCCC----ccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC---------CCcC-HHHHH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCE----QTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG---------IEPD-LVSYN 167 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~p~-~~~~~ 167 (377)
....|+.+-|..+++.=...+.. .+..-+..-+.-..+.|+.+-...++-.+..+.. ..|. ...|.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 77889999998887764433211 1122334445556777777777776666544310 0111 11222
Q ss_pred HHHH--------HHHHcCCHHHHHHHH--HHHHHC-CCCCCHHhHHHHHHHHHcCCCHH----------HHHHHHHHHH-
Q 042154 168 TIIK--------AFVDKGSLDSANTLL--YEMEKK-GIRLDLITFNTLLLGFYSNGRFA----------DAEKIWETMV- 225 (377)
Q Consensus 168 ~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~- 225 (377)
-+++ .+.+.++-.++...| +..... .+.+-........+.+.+..... +-+++.+.+.
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222 011112222222211 110000 01111222233344444443311 1122222222
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 042154 226 NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKL 305 (377)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (377)
+.|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+... .+.-|..
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~P 749 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLP 749 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchh
Confidence 12322333455666677778899999999888876 4788888888899999999998888866322 1445777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
.+.+|.+.|+.++|.+++.+.-. .. -...+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 88899999999999998755321 11 567788888888887765433
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.11 Score=41.85 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGI-EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI--RLDLITFNTLL 205 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 205 (377)
.|+.-+. +.+.|++..|...|....+++.- .-....+-.|..++...|++++|..+|..+.+.-. +.-+..+.-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5555444 44566688888888777664211 11233566677888888888888888877775421 11235566677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 042154 206 LGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888887765
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.98 E-value=0.018 Score=32.43 Aligned_cols=40 Identities=5% Similarity=0.028 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHH
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGT 63 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 63 (377)
.++..+..+|.+.|++++|++.|+++.+.. |.|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 456667777777777777777777777654 4455554444
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.96 E-value=0.33 Score=34.43 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=50.3
Q ss_pred HHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHcCC
Q 042154 136 ACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI---TFNTLLLGFYSNG 212 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 212 (377)
++...|+.+.|++.|.+... -.+-....||.-..++.-.|+.++|++=+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35556666666666666543 222345566666666666666666666666665432111222 2333333555666
Q ss_pred CHHHHHHHHHHHHhCC
Q 042154 213 RFADAEKIWETMVNMN 228 (377)
Q Consensus 213 ~~~~a~~~~~~~~~~~ 228 (377)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666665554
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.93 E-value=0.43 Score=34.99 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=13.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 042154 174 VDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFY 209 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (377)
...+.+.....+++.+...+. .+....+.++..|+
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 333344444444444443331 23334444444444
No 250
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.90 E-value=1.2 Score=39.66 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=133.8
Q ss_pred hhccccCCCCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc
Q 042154 8 LSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK 87 (377)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 87 (377)
++..++-+..|-|....-+++..+..+...+-...+..+|...| .+...|..++.+|... .-+....+++++.+..
T Consensus 53 isg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~d 128 (711)
T COG1747 53 ISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD 128 (711)
T ss_pred HHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc
Confidence 34445566777788888899999999999999999999998765 4566788899988888 5677778888777653
Q ss_pred CCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCc-----cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC
Q 042154 88 DISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQ-----TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD 162 (377)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 162 (377)
. .+......|+..|-+ ++.+.+...|.+...+-++. -...|.-+...- ..+.+..+.+..++..+.|...-
T Consensus 129 f-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~ 204 (711)
T COG1747 129 F-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRG 204 (711)
T ss_pred c-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchH
Confidence 2 334444456666655 88888888887765432221 122444444321 45677788888887766666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFY 209 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (377)
...+.-+-.-|....++.+|++++..+.+.+-. |...-..++..+.
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lR 250 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHH
Confidence 667777778888899999999999988876433 5555555555443
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.063 Score=45.72 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhch
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLP 154 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (377)
.+.-++.+.+++..|++.-++.+..+ ++++-....-..++...|+++.|...|+++.
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 46666666666666666666665554 4455555556666666666666666666665
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.7 Score=36.81 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 042154 271 FYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
|...|-.+....++..|.+.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhc
Confidence 3344444444555666666655
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.86 E-value=0.92 Score=38.11 Aligned_cols=131 Identities=9% Similarity=0.216 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh--CCC----hhHHHHHHHhchhhcCC--CcCHHHHHHHHHHHHHcCCH
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVN--SKK----FDEVDGLFKDLPHKLGI--EPDLVSYNTIIKAFVDKGSL 179 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~ 179 (377)
+++...+++.|.+.|+.-+..+|-+..-.... ..+ ...+..+|+.|+++..+ .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777666555442222222 222 45677777777665332 2334445555433 33332
Q ss_pred ----HHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 180 ----DSANTLLYEMEKKGIRLD--LITFNTLLLGFYSNGR--FADAEKIWETMVNMNVRPNVRSYNARL 240 (377)
Q Consensus 180 ----~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (377)
+.++.+|+.+.+.|+..+ .+..+.++........ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345666666666565432 2233333333222222 335666677777777666666655443
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.80 E-value=0.12 Score=41.77 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=69.1
Q ss_pred CcCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 042154 160 EPDLVSYNTIIKAFVD-----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVR 234 (377)
Q Consensus 160 ~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (377)
+.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+-. ..|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 4466666666665543 3456666666777777777777777777776654321 112211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLE 285 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 285 (377)
+....-.|- .+-+-++.++++|...|+.||..+-..|+++|.+.+..-
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 111111221 233457899999999999999999999999999887543
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=1.8 Score=40.94 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcC
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMP 119 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 119 (377)
+.-+....+......+++.+.+.|......+. .|+.+|.+.++.++-.+..+...
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhtt-lLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTT-LLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHH-HHHHHHHHhcchHHHHHHHhcCC
Confidence 33334444444444444444444443333333 45555555555555555444443
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.75 E-value=1.1 Score=38.05 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=23.9
Q ss_pred hhhcccHHHHHHHHHhcccCC-CCccchhhHHHHHHHHHhcCChHHHHH
Q 042154 31 IYKENNLKRLVDKFKKSSDLG-RFRTNTGIYTGTVQRLANAKRFRWIEE 78 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 78 (377)
+..+++.++|+..+.+...+- ..-..-.+|..+..+.++.|++++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344566666666665554321 011122345555556666666555544
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.82 Score=36.45 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMN---VRPNVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+++-.+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3333444444556666666665533221 122344555555555 44555544433
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=1.8 Score=40.29 Aligned_cols=298 Identities=13% Similarity=0.109 Sum_probs=168.3
Q ss_pred CccchhhHH-----HHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccC---CHHHHHHHHHhcCCCCCC
Q 042154 53 FRTNTGIYT-----GTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAA---MFENARKVFDEMPGRNCE 124 (377)
Q Consensus 53 ~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~ 124 (377)
++.+..-|. .+++-+...+.+..|+++-..+...-... ..++......+.+.. +-+-+..+-+++... .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~- 504 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L- 504 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-
Confidence 555555454 34666677788888888876665432222 455555666666653 233344444444432 2
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------
Q 042154 125 QTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP---DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKG-------- 193 (377)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 193 (377)
.+-.+|..+.+-....|+++-|..+++.=.......| +..-+...+.-+...||.+....++-.+.+.-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777788888888888754322211111 22234555666777888887777776665431
Q ss_pred ---CCCCHHhHHHHHH--------HHHcCCCHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHhcCC--------
Q 042154 194 ---IRLDLITFNTLLL--------GFYSNGRFADAEKIWE--TMV----NMNVRPNVRSYNARLDGLAIEKQ-------- 248 (377)
Q Consensus 194 ---~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~~~-------- 248 (377)
.+.....|.-++. .+.+.++-.++...|. ... ..+..|+ ......++.+...
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 0111111221111 0111112122221111 100 0111222 2223334443332
Q ss_pred --HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 249 --TKKALELVGEMRSK-EINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 249 --~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
..+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+.
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 12223333444333 434444566666777888999999999988665 47788888888899999999988877654
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 326 TFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
.. .+.-|.-...+|.+.|+.++|.+++.+...
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 32 255677788999999999999999887653
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.61 E-value=0.89 Score=36.22 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 042154 105 AAMFENARKVFDEMPGRNCE-QTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSAN 183 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (377)
.+....+...+......... .....+......+...+++..+...+...............+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554311 12566667777777888888887777766531012334445666666777777788888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHH-HHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042154 184 TLLYEMEKKGIRLDLITFNTLLL-GFYSNGRFADAEKIWETMVNMNV--RPNVRSYNARLDGLAIEKQTKKALELVGEMR 260 (377)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (377)
+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887777654332 122222223 67777888888888887755221 0122333334444566777888888877777
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 261 SKEINP-DVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN-KAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 261 ~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
... .. ....+..+...+...++.+.|...+. .....|+ ...+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 652 22 35566667777777777777777777 3333443 334444444444666677777777776664
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=4 Score=43.49 Aligned_cols=323 Identities=9% Similarity=0.031 Sum_probs=178.5
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCC-CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHc
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGR-FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGK 104 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (377)
.+..+=.+.+.+.+|+..++.-..... -.-....|-.+...|+..++.|...-+...- ..+..++ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-----~a~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-----FADPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-----hcCccHH-HHHHHHHh
Confidence 444556678889999999988421110 0112233444555999999999888877641 1233445 36666778
Q ss_pred cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHH-HHHHHHcCCHHHHH
Q 042154 105 AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI-IKAFVDKGSLDSAN 183 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 183 (377)
.|++..|...|+.+.+.+ ++...+++-++......+.++.++...+-... ...+....++.+ +.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 999999999999999987 34477888888888888888888887666543 333444444443 35557888888888
Q ss_pred HHHHHHHHCCCCCCHHhHHH--HHHHHHcCC--CHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHH
Q 042154 184 TLLYEMEKKGIRLDLITFNT--LLLGFYSNG--RFADAEKIWETMVNMNVRP---------NVRSYNARLDGLAIEKQTK 250 (377)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 250 (377)
..+. . . +..+|.. +...+.+.. |.-.-.+..+.+.+.-+.| =...|..++..+.-.. .+
T Consensus 1539 ~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~ 1610 (2382)
T KOG0890|consen 1539 SYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LE 1610 (2382)
T ss_pred hhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HH
Confidence 7766 2 1 2222222 233333322 2222222333333221111 0123444443332111 11
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHH-hc----CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 042154 251 KALELVGEMRS-KEINPDVFTFYALI---KGFVNEGNLEEAKRWYN-KS----GCGM-NKAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 251 ~a~~~~~~~~~-~g~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~-~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~ 320 (377)
...+.+..... .....+...|..-+ +.+.+..++--|.+--- .. +... -..+|-...+.....|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111111100 00011111121111 11222111111111111 11 1111 2357888888888899999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCcee
Q 042154 321 NLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCR 368 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 368 (377)
..+-.+.+.+ -+..+-.....+...|+...|..++++..+...+.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 8876666654 34566678888999999999999999988776655
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.55 E-value=0.99 Score=36.34 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=99.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 042154 172 AFVDKGSLDSANTLLYEMEKKGI--RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE--- 246 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 246 (377)
.-.+.|++++|.+.|+.+...-+ +....+.-.++.++.+.++++.|+...++....-.......|...|.+++..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 34567888888888888875421 2234555666677778888888888888777654332334455555554421
Q ss_pred ----CCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChH
Q 042154 247 ----KQTK---KALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLD 317 (377)
Q Consensus 247 ----~~~~---~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (377)
.+.. .|..-|+++++. -||.. =...|..-+. ...+ ...=..+.+-|.+.|.+.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~L---A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDAL---AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHHH---HHHHHHHHHHHHHhcChH
Confidence 2222 334444444443 22221 1111111111 0000 001123566788899999
Q ss_pred HHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 318 FAFNLCKRTFSERCLVDQ---APLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
.|..-+++|++. .+-.. ..+-.+..+|...|-.++|...-.-+..+-+
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 999999998886 22222 2455667788889988888877666655443
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.5 Score=40.48 Aligned_cols=92 Identities=8% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHHHhCCChhHHHHHHHhchhhcC----CCc---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 042154 135 GACVNSKKFDEVDGLFKDLPHKLG----IEP---------DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF 201 (377)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~----~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (377)
+.|.+.|++..|..-|++.....+ ..+ -..++..+.-++.+.+++..|++.-...+..+. +|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 457777777777777776543211 111 112344455555666666666666666555532 255555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 202 NTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
..-..++...|+++.|+..|+++++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55555666666666666666666654
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.49 E-value=1.7 Score=38.63 Aligned_cols=59 Identities=17% Similarity=0.001 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-h-cCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 270 TFYALIKGFVNEGNLEEAKRWYN-K-SGCGM--NKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+-..+..++.+.|+.++|.+.++ - ...+. +......|+.++...+.+.++..++.+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33456666667777777777777 1 11111 233555677777777777777777766543
No 264
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.41 E-value=1.7 Score=38.10 Aligned_cols=308 Identities=9% Similarity=0.096 Sum_probs=158.6
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhcccCC---CCccchhhHHHHHHHHHhc--------CChHHHHHHH-------HHhhh
Q 042154 24 IGSVIRGIYKENNLKRLVDKFKKSSDLG---RFRTNTGIYTGTVQRLANA--------KRFRWIEEIL-------EHQKQ 85 (377)
Q Consensus 24 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~-------~~~~~ 85 (377)
=+..++.+...|++.++..+++++...- ...-+..+|+.++-.+++. ...+-....+ .++..
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 3556678889999999999999886532 1336788888866555442 1122222222 22222
Q ss_pred h------cCCCccchhHHHHHHHHccC--CHHHHHHHHHhcCCCCCCccHH-HHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 86 Y------KDISKEGFTARLIALYGKAA--MFENARKVFDEMPGRNCEQTVL-SFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 86 ~------~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
. ...|...+...++....-.. +..--.+++......-+.|+-. ....+...+.. +.+++..+-+.+...
T Consensus 211 ~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~ 288 (549)
T PF07079_consen 211 FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS 288 (549)
T ss_pred HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH
Confidence 1 12344444444443332221 1122222222222222233322 23333333333 344444444333211
Q ss_pred cCCCc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------------CHHhH------------
Q 042154 157 LGIEP----DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRL-------------------DLITF------------ 201 (377)
Q Consensus 157 ~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~------------ 201 (377)
.+.+ =..++..++....+.++...|.+.+.-+....... |-..+
T Consensus 289 -~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 289 -KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 1111 12356666666666666666666655444321110 00000
Q ss_pred ------------HHHH---HHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHH
Q 042154 202 ------------NTLL---LGFYSNGR-FADAEKIWETMVNMNVRPNVRSYNARL----DGLAIE---KQTKKALELVGE 258 (377)
Q Consensus 202 ------------~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~~a~~~~~~ 258 (377)
..|+ .-+.+.|. -++|+++++.+.+-. .-|...-|.+. .+|.+. ..+.+-+.+-+-
T Consensus 368 ~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1111 11223343 566777777666532 12333322222 233222 233444444444
Q ss_pred HHhCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 042154 259 MRSKEINPDV----FTFYALIKG--FVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331 (377)
Q Consensus 259 ~~~~g~~p~~----~~~~~l~~~--~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 331 (377)
+.+.|++|-. ..-|.|.++ +..+|++.++.-.-. -..+.|.+.+|..+.-++....++++|..++.. +
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----L 521 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----L 521 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----C
Confidence 5566777643 233444443 456899998887666 666789999999999999999999999999975 4
Q ss_pred CCChhhHHH
Q 042154 332 LVDQAPLQL 340 (377)
Q Consensus 332 ~~~~~~~~~ 340 (377)
+|+..++++
T Consensus 522 P~n~~~~ds 530 (549)
T PF07079_consen 522 PPNERMRDS 530 (549)
T ss_pred CCchhhHHH
Confidence 667777754
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.27 E-value=0.48 Score=33.65 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=68.4
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH--HHHHHHHHHHHHc
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL--VSYNTIIKAFVDK 176 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~ 176 (377)
.-+++..|+++.|++.|.+....- |....+||.-..++.-.|+.++|++-+++..+-.|-.... ..|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345677888888888888876652 4567888888888888888888888888776654433221 2344445567778
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 042154 177 GSLDSANTLLYEMEKKGI 194 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~ 194 (377)
|+-+.|..=|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888777653
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=95.27 E-value=1.2 Score=39.33 Aligned_cols=111 Identities=10% Similarity=0.016 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLV-SYNTIIKAFVDKGSLDSANTLL 186 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 186 (377)
..+|.++-++..+.+ +.|+.+...+..+..-.++++.|..+|++.. ...||.. +|......+.-.|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555554 3455555555555555556666666666654 3344432 4444444455566666666666
Q ss_pred HHHHHCCC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 042154 187 YEMEKKGI-RLDLITFNTLLLGFYSNGRFADAEKIWET 223 (377)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (377)
++..+..+ ..-.......++.|+.. ..+.|+++|-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 66554321 11122233333345443 35555555543
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.20 E-value=0.82 Score=33.27 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=24.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 174 VDKGSLDSANTLLYEMEKKGI--RLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
.+.|++++|.+.|+.+...-. +-....-..++.+|.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555555555443311 112223334444555555555555555555544
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=1.1 Score=33.78 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=88.4
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCccH-HHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHH-HHHHH--HHHHHHc
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQTV-LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLV-SYNTI--IKAFVDK 176 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~ 176 (377)
-+.+.+..++|+.-|..+.+.|...-+ ...-.+.....+.|+...|...|+++-.. ...|-.. -...+ .-.+...
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcc
Confidence 356778889999999999887643211 12222344467889999999999988544 3333322 11111 2245678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (377)
|.++.+....+-+-..+-+.....-..|.-+-.+.|++.+|.+.|.++......|-
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 88998888888777666555566667777788899999999999998886443443
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.99 E-value=1.3 Score=34.62 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=40.2
Q ss_pred HhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH
Q 042154 138 VNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (377)
-..|-+.-|.--|.+.. .+.|+ +.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-
T Consensus 76 DSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~L 151 (297)
T COG4785 76 DSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKL 151 (297)
T ss_pred hhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHh
Confidence 33344444444444333 33444 2355555555566666666666666665553332222222222222 2355665
Q ss_pred HHHHHHHHHhC
Q 042154 217 AEKIWETMVNM 227 (377)
Q Consensus 217 a~~~~~~~~~~ 227 (377)
|.+-|.+.-+.
T Consensus 152 Aq~d~~~fYQ~ 162 (297)
T COG4785 152 AQDDLLAFYQD 162 (297)
T ss_pred hHHHHHHHHhc
Confidence 55555544443
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.83 E-value=0.038 Score=29.01 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 042154 323 CKRTFSERCLVDQAPLQLVVDRLAKELRVEEAK 355 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 355 (377)
|++.++..+. ++..|..+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455554443 6667777777777777777775
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.78 E-value=0.54 Score=38.69 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=50.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS-----KEINPDVFTFYAL 274 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~p~~~~~~~l 274 (377)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666777777777777777665 34666777777777777777777777766654 3666666665555
Q ss_pred HHH
Q 042154 275 IKG 277 (377)
Q Consensus 275 ~~~ 277 (377)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.64 E-value=1.2 Score=32.43 Aligned_cols=84 Identities=4% Similarity=-0.100 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCcc-chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRT-NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
.+-.-.....+.|++++|++.|+.+..+-...+ ...+.-.++.++-+.+++++|...+++..+..+.....-|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 333444555667888888888888875532222 3445567778888888888888888888777655444444445555
Q ss_pred HHccC
Q 042154 102 YGKAA 106 (377)
Q Consensus 102 ~~~~~ 106 (377)
++...
T Consensus 92 L~~~~ 96 (142)
T PF13512_consen 92 LSYYE 96 (142)
T ss_pred HHHHH
Confidence 44333
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.49 E-value=2.9 Score=36.21 Aligned_cols=61 Identities=13% Similarity=-0.008 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINP---DVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
...+|..++..+.+.|.++.|...+..+...+... ++.....-+......|+..+|...++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~ 208 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLR 208 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777777788888877777776643111 23334444555666777777777776
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.47 E-value=0.11 Score=27.69 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTF 327 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~ 327 (377)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=1.7 Score=33.42 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=39.4
Q ss_pred HHHhcCCHHHHHHHHH-hcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 042154 277 GFVNEGNLEEAKRWYN-KSGCGMNKAIFK-----LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 277 ~~~~~~~~~~a~~~~~-~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
.+...|++++|...++ ..+.+.| ..+. -|.+.....|.+++|+..++.....+.. ......-.+++...|+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 3445555555555555 2221111 1222 1233445555555555555544433221 1122334455555566
Q ss_pred HHHHHHHHHhhccCC
Q 042154 351 VEEAKELVELGKTNS 365 (377)
Q Consensus 351 ~~~A~~~~~~~~~~~ 365 (377)
.++|+.-|+++.+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666655555555543
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.44 E-value=0.82 Score=35.11 Aligned_cols=60 Identities=5% Similarity=0.013 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc--cchhHHHHHHHHccCCHHHHHHHHHhc
Q 042154 59 IYTGTVQRLANAKRFRWIEEILEHQKQYKDISK--EGFTARLIALYGKAAMFENARKVFDEM 118 (377)
Q Consensus 59 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 118 (377)
.+..+...|++.|+.+.|.+.+.++......+. ...+-.+++.....+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455566666666666666666666554422221 122224555555566665555555443
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.30 E-value=6.2 Score=39.16 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=19.4
Q ss_pred chhHHHHHHHHccC--CHHHHHHHHHhcCC
Q 042154 93 GFTARLIALYGKAA--MFENARKVFDEMPG 120 (377)
Q Consensus 93 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~ 120 (377)
.+...++..|.+.+ .+++|+....++..
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44456788888777 67777777766664
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.29 E-value=1.6 Score=32.47 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=29.1
Q ss_pred HhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCC
Q 042154 68 ANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRN 122 (377)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 122 (377)
...++.+.+..++..+....+.....- ..-...+...|++.+|.++|+++.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~-~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELD-LFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHH-HHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666655433222211 124455566666666666666665543
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.28 E-value=0.9 Score=37.45 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 042154 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN-----MNVRPNVRSYNA 238 (377)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 238 (377)
.++..++..+...|+.+.+.+.++++..... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3577788888999999999999999998744 4888999999999999999999999988764 578888777666
Q ss_pred HHHH
Q 042154 239 RLDG 242 (377)
Q Consensus 239 l~~~ 242 (377)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 280
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=3.7 Score=36.36 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
..+|.++-+...+.+ +-|......+..+....++++.|..+|++.... .|| ..+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555666666555 345555555555555566666666666666653 343 3344444444555666666666666
Q ss_pred -hcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHH
Q 042154 293 -KSGCGMNK---AIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 293 -~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
.....|.. ......++.|+..+ .+.|+++|-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 34444432 22333344454443 455655553
No 281
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=3 Score=35.10 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=110.7
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH----HHHHHHHHHHHHcC
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL----VSYNTIIKAFVDKG 177 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~ 177 (377)
.-..|...+|-..++++.+. .|.|..++...=.+|.-+|+.+.-...++++..+. .||. ..-....-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhc
Confidence 34567788888888888875 47788899988899999999888888888876542 3333 33344455667899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM---NVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
-+++|++.-++..+.+. .|...-.++...+--.|+..++.+...+-... +--.-..-|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999999999988753 37777788888888899999999887765431 100111223333444566789999999
Q ss_pred HHHHHH
Q 042154 255 LVGEMR 260 (377)
Q Consensus 255 ~~~~~~ 260 (377)
+|+.=.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 997643
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.17 E-value=0.096 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 337 PLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 337 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
+|..|..+|.+.|++++|.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999954
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.16 E-value=0.96 Score=34.74 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 130 FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL--VSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
+..+...|.+.|+.+.|++.|.++.+. ...+.. ..+-.+|+.....+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444455555555555555544332 222221 233444444444555555544444443
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.10 E-value=3.6 Score=35.67 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 299 NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV---DQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
...+|..+++.+.+.|.++.|...+.++...+... .+.....-...+...|+.++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577788888889999999998888887754221 344555567778888888888888887776
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.08 E-value=3.1 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHhcCCHHHHHHHHHhhc
Q 042154 344 RLAKELRVEEAKELVELGK 362 (377)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~~ 362 (377)
.+.+.+++++|.++++-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556778888888887554
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.62 Score=38.53 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042154 193 GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN---VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVF 269 (377)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 269 (377)
|......+...++..-....+++.++..+-++...- ..|+...+ .+++.+ ..-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334444455555555555556666666665555321 11221111 112222 2234556666666666666666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 042154 270 TFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+++.+++.+.+.+++..|.++..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt 159 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVT 159 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666666665544
No 287
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.02 E-value=2.5 Score=33.56 Aligned_cols=217 Identities=17% Similarity=0.080 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHhhhhcCCC-ccchhHHHHHHHHccCCHHHHHHHHHhcCCC-CCCccHHHHHHHHHHHHhCCChhHHHH
Q 042154 71 KRFRWIEEILEHQKQYKDIS-KEGFTARLIALYGKAAMFENARKVFDEMPGR-NCEQTVLSFNALLGACVNSKKFDEVDG 148 (377)
Q Consensus 71 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (377)
+....+...+.......... ...........+...+++..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445555554444432221 2334445666667777777777776666541 123445556666666666677777777
Q ss_pred HHHhchhhcCCCcCH-HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 149 LFKDLPHKLGIEPDL-VSYNTIIK-AFVDKGSLDSANTLLYEMEKKGI--RLDLITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 149 ~~~~~~~~~~~~p~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
.+...... .++. ........ .+...|+++.+...+........ ......+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALAL---DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcC---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 77666532 2221 12222222 56677777777777777754211 122333344444455666777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 225 VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
...........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 66532113455666666676777777777777777664 232 2333334444445556677776666
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.71 E-value=5.9 Score=36.88 Aligned_cols=148 Identities=19% Similarity=0.104 Sum_probs=71.1
Q ss_pred HHcCCHHHHHHHHHHHHH-------CCCCCCHHhHHHHHHHHHcCC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 174 VDKGSLDSANTLLYEMEK-------KGIRLDLITFNTLLLGFYSNG-----RFADAEKIWETMVNMNVRPNVRSYNARLD 241 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (377)
....|.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++.+..+.|. |+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 345577777777777655 33 2234445555555532 55667777777776663 44333222222
Q ss_pred HHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhc
Q 042154 242 GLAI-EKQTKKALELVGEMRSKEINPDVFTFYALIKGFV----NEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEK 313 (377)
Q Consensus 242 ~~~~-~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~ 313 (377)
-... ..+...|.++|......|..+ .+..+..+|. ...+...|..++. ..+ .|....-...+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 1111 234567777777777666421 2222222221 2235666666666 333 2222211222223333
Q ss_pred CChHHHHHHHHHHHhcC
Q 042154 314 GDLDFAFNLCKRTFSER 330 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~ 330 (377)
++++.+.-.+..+.+.+
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 55555554444444443
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=1.2 Score=37.01 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=64.5
Q ss_pred CCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 042154 122 NCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG--IEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199 (377)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (377)
|.+.+..+...++..-....+++.++..+-++..... ..|+. +-.++++.| -.-++++++.++..=.+.|+-||-.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4445555555566555556777777777766643211 11111 122233333 2346667777777777778888888
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
++..+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888877777666643
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.58 E-value=0.0061 Score=45.10 Aligned_cols=129 Identities=15% Similarity=0.189 Sum_probs=74.2
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHcc
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKA 105 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (377)
.+++.+.+.+.++.+..+++.+...+ ...+....+.++..|++.++.+...++++.... .-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhc
Confidence 35566777777777777777777554 234566777788888888777777776652111 1112466667777
Q ss_pred CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
|.+++|.-++.++....- .+..+...++++.|.+.+.+. ++...|..+++.|...++
T Consensus 84 ~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~-------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV-------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC-------SSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCc
Confidence 777777777766544220 011133445556665333322 345667777776655443
No 291
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.46 E-value=7.6 Score=37.32 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=89.2
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHH----HhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRL----ANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
......-...+...|.+.+|++.--.+. |+..-..++..+ ...++......+.+.+...-...++.+.-
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvl 419 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVL 419 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHH
Confidence 4455555566677777777776554332 222333333333 23344444444444433322222233332
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCc----cH---HHHHHHHH-HHHhCCChhHHHHHHHhchhhc---CCCcCHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQ----TV---LSFNALLG-ACVNSKKFDEVDGLFKDLPHKL---GIEPDLVS 165 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~---~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~ 165 (377)
.-+.......++++|..++.++...-..| .. ..++.+-. .....|+++.|.++.+...... ...+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 34445566788888888887754321111 11 13333322 2345677888888777665431 12334456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
+..+..+..-.|++++|..+.....+.
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 666677777788888888887776654
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.39 E-value=3.1 Score=32.69 Aligned_cols=161 Identities=11% Similarity=-0.031 Sum_probs=91.4
Q ss_pred ccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHH
Q 042154 91 KEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTII 170 (377)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 170 (377)
-..++|-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.--|++.-|.+-+.+.-+.....|=...|--+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 346677788888899999999999999988762222222232222 3346788888777666654322233233343333
Q ss_pred HHHHHcCCHHHHHHH-HHHHHHCCCCCCHHhHHHH-HHHHHcCCCHHHHHHHHHHHHhCCC------CCCHHHHHHHHHH
Q 042154 171 KAFVDKGSLDSANTL-LYEMEKKGIRLDLITFNTL-LLGFYSNGRFADAEKIWETMVNMNV------RPNVRSYNARLDG 242 (377)
Q Consensus 171 ~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~ 242 (377)
. ..-++.+|..- .++..+. +..-|... +..|...=..+ .+++++....- ..=..||--+..-
T Consensus 177 E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2 34466666543 4444433 33333332 23333221222 22332221110 0124678888899
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 042154 243 LAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~ 262 (377)
+...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 99999999999999988775
No 293
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.12 E-value=2.9 Score=34.18 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCC----CCccchhh--------HHHHHHHHHhcCChHHHHHHHHHhhhhcCCC
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLG----RFRTNTGI--------YTGTVQRLANAKRFRWIEEILEHQKQYKDIS 90 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 90 (377)
....-.+.+.-..||..|++..++-.+.- ....+..+ ...=|.+++..++|.++....-+.-+.....
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34444455666888988888887664321 01111111 1223678888889888888776655554444
Q ss_pred ccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH-----hCCChhHHHHHH
Q 042154 91 KEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV-----NSKKFDEVDGLF 150 (377)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 150 (377)
...+....|-.|.+.+.+..+.++-....+..-.-+...|..++..|. =.|.+++|+++.
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 555666778888888888888877766554321223444666655544 468888888776
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.12 E-value=2.6 Score=30.93 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=35.2
Q ss_pred hcCChHHHHHHHHHhhhhcCCCc-cchhHHHHHHHHccCCHHHHHHHHHhcCCCC
Q 042154 69 NAKRFRWIEEILEHQKQYKDISK-EGFTARLIALYGKAAMFENARKVFDEMPGRN 122 (377)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 122 (377)
..++.+++..+++.+.-..+... ..++ -...+...|++.+|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777888888877776543322 2233 5566777888888888888887764
No 295
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.99 E-value=1.9 Score=29.15 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIK 171 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 171 (377)
|.-+..+-++.+....+.|++....+.+++|.+.+++..|+++|+-++.+.|.. ...|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 334556666666667777777777777777777777777777777776553322 225555543
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.89 E-value=1.5 Score=29.35 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
|.-++.+-++.+....+.|++....+.+++|.+.+|+..|+++++-++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666666666666666655443
No 297
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.83 E-value=7.5 Score=35.51 Aligned_cols=323 Identities=11% Similarity=0.021 Sum_probs=168.8
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh-HHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT-ARL 98 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 98 (377)
+-..|..||.---...+.+.+..++..+...- |--..-|......-.+.|..+.+.++|++..+. .+.+...+ +-+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 44556666665555555666777777776432 333334555556666778888888888887764 33333333 233
Q ss_pred HHHHHccCCHHHHHHHHHhcCCC-CC-CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHH---
Q 042154 99 IALYGKAAMFENARKVFDEMPGR-NC-EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAF--- 173 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--- 173 (377)
..+....|+.+...+.|+..+.. |. --+...|...|..-...+++.....+|+++++. |. ..++..-.-|
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~-~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PL-HQLNRHFDRFKQL 195 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hh-hHhHHHHHHHHHH
Confidence 33444567777777788776542 21 124456777777777778888888888887653 11 1122111111
Q ss_pred HHc------CCHHHHHHHHHHHHHC---C-CCCCHHhHHHHHH------------------H-------HHcCCCHHHHH
Q 042154 174 VDK------GSLDSANTLLYEMEKK---G-IRLDLITFNTLLL------------------G-------FYSNGRFADAE 218 (377)
Q Consensus 174 ~~~------~~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~------------------~-------~~~~~~~~~a~ 218 (377)
.+. ...+++.++-...... + ..+.......-+. . +..........
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 111 1222222222111110 0 0000011111110 0 11111111111
Q ss_pred HHHHHHHhC---CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 219 KIWETMVNM---NVR----PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 219 ~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
-.|+.-... .++ ++..+|..-+.--...|+.+.+.-+|++..-- +..=...|-..+......|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 122221111 111 34566777777778888888888888887632 1112234445555555668888888777
Q ss_pred H---hc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHH
Q 042154 292 N---KS--GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA-PLQLVVDRLAKELRVEEAK 355 (377)
Q Consensus 292 ~---~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 355 (377)
. +. .-.|....+.+.+ .-..|++..|..+++...+.- |+.. .-..-+....+.|..+.+.
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 7 22 2233333333332 445678999999999888763 4433 2223345566788888777
No 298
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.57 E-value=5.2 Score=33.07 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=76.6
Q ss_pred CChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHcCCCHHHH
Q 042154 141 KKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD-KG-SLDSANTLLYEMEK-KGIRLDLITFNTLLLGFYSNGRFADA 217 (377)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (377)
..+.+|+.+|+....+..+--|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34556666666332111344566666666655544 21 22222233333332 23445666677777777777777777
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHH
Q 042154 218 EKIWETMVNM-NVRPNVRSYNARLDGLAIEKQTKKALELVGE-----MRSKEINPDVFTFYALIKGF 278 (377)
Q Consensus 218 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~g~~p~~~~~~~l~~~~ 278 (377)
.++++..... +...|...|..+|......|+..-...+..+ +.+.|+..+...-..+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 7777766644 4455667777777777777777766666665 23445555555444444333
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.57 E-value=0.45 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+|..+..+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.48 E-value=3.6 Score=31.06 Aligned_cols=134 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
.+.+..+.+.+++|+...+..+++.+.+.|++.. +.++...++-+|.......+-.+.. ....+..+=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3445555566777777777777777777776544 3444455555555554444433322 222233333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042154 263 EINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTF 327 (377)
Q Consensus 263 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 327 (377)
. ...+..++..+...|++-+|.++.+..+. .+......++.+..+.+|...=..+++-..
T Consensus 88 -L---~~~~~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 -L---GTAYEEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred -h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 01344556666677777777777763211 111122334555555555544444444333
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.39 E-value=9.4 Score=35.60 Aligned_cols=180 Identities=12% Similarity=0.121 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHHH---HHhcCChHHHHHHHHHhhh-------hcCCCccchhHHHHHHHHccC
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYTGTVQR---LANAKRFRWIEEILEHQKQ-------YKDISKEGFTARLIALYGKAA 106 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 106 (377)
...|.+.++...+.+.. .......++.. .....+.+.|+.+++.+.. .+ .....+ .+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~-~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQY-GLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCcccc-HHHHHHhcCC
Confidence 45677777777666522 22222222222 3345667777777776655 22 111222 3555554432
Q ss_pred -----CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh-CCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH----Hc
Q 042154 107 -----MFENARKVFDEMPGRNCEQTVLSFNALLGACVN-SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV----DK 176 (377)
Q Consensus 107 -----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~ 176 (377)
+.+.|..++.+.-+.| .|+...+-..+..... ..+...|.++|....+. |..+ .+-.+..+|. -.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~---A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL---AIYRLALCYELGLGVE 377 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH---HHHHHHHHHHhCCCcC
Confidence 4455666666666555 2333333222222222 13445666666655333 3211 1111111111 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
.+.+.|..++.+.-+.| .|....-...+..+.. ++++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 24555666666555554 2222222222223333 45555555555444444
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.38 E-value=0.14 Score=28.11 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTF 327 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 327 (377)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555544
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.35 E-value=3.8 Score=30.96 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHH
Q 042154 114 VFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL 149 (377)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (377)
++..+.+.+++|+...+..+++.+.+.|++.....+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444455666666666666666666665544443
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.21 E-value=2.2 Score=33.12 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK---EINPDVFTFYALIKGFVNEGNLEEA 287 (377)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~~~~~~a 287 (377)
.|.+.|-++...+.--++.....+...| -..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444444444443333333333333333 234444555444444432 1234445555555555555554444
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.17 E-value=4.4 Score=31.29 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=81.2
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 042154 198 LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNA-----RLDGLAIEKQTKKALELVGEMRSKEINPDVFTF- 271 (377)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~- 271 (377)
+..|..++.... .+.. +.....+++.... ...+|.. +...+...|++++|...++..... |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk 125 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLK 125 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHH
Confidence 334555555443 2333 4455555665542 1233333 345678889999999999887753 222233
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 272 ----YALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 272 ----~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
-.|.......|.+++|+..++ ..+..........-.+.+...|+-++|+.-|.+.+..+
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345566778999999999999 44433344445556778999999999999999999875
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.15 E-value=0.24 Score=25.71 Aligned_cols=31 Identities=13% Similarity=-0.121 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 336 APLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
.+|..+..+|...|++++|.+.++++.+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688899999999999999999999987654
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.97 E-value=0.27 Score=25.40 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 338 LQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 338 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
+..+..++.+.|++++|.+.++++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445555555555555544443
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.96 E-value=0.59 Score=24.04 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
..+..+...+...|++++|++.|++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888899999999999999998875
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.69 E-value=3.8 Score=36.33 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=84.2
Q ss_pred HhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 042154 244 AIEKQTKKAL-ELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 244 ~~~~~~~~a~-~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 320 (377)
...|+.-.|- +++.-+......|+.....+. .+...|+++.+.+.+. +.-+.....+..++++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3567766654 445555544334555444433 3557899999999888 3334456677888889999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 321 NLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
..-..|+...+. +++........-...|-++++...|++...-+.+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 998888887666 6666655555566778889999998888765543
No 310
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.62 E-value=12 Score=35.35 Aligned_cols=186 Identities=13% Similarity=0.115 Sum_probs=107.7
Q ss_pred HHHHHHHHhcccCCCCccc--hhhHHHHHHHHH-hcCChHHHHHHHHHhhhhcCCCccc-----hhHHHHHHHHccCCHH
Q 042154 38 KRLVDKFKKSSDLGRFRTN--TGIYTGTVQRLA-NAKRFRWIEEILEHQKQYKDISKEG-----FTARLIALYGKAAMFE 109 (377)
Q Consensus 38 ~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 109 (377)
..|+..++.+.+...++|. +.++-.+...+. ...+++.|+..+++.......++-. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456666666644435553 445666777766 5788999999999775543221111 1124667777776666
Q ss_pred HHHHHHHhcCCC----CCCccHHHHHHH-HHHHHhCCChhHHHHHHHhchhhcC--CCcCHHHHHHHHHHHH--HcCCHH
Q 042154 110 NARKVFDEMPGR----NCEQTVLSFNAL-LGACVNSKKFDEVDGLFKDLPHKLG--IEPDLVSYNTIIKAFV--DKGSLD 180 (377)
Q Consensus 110 ~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~--~~~~~~ 180 (377)
|....++.++. +..+-...|..+ +..+...+++..|.+.++.+..... ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88877775432 222223334433 3333344799999999988865533 2333344444554443 455567
Q ss_pred HHHHHHHHHHHCC---------CCCCHHhHHHHHHHHH--cCCCHHHHHHHHHHH
Q 042154 181 SANTLLYEMEKKG---------IRLDLITFNTLLLGFY--SNGRFADAEKIWETM 224 (377)
Q Consensus 181 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 224 (377)
++.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777664321 1345667777777554 567766666655544
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.56 E-value=0.17 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=13.0
Q ss_pred ccchhhHHHHHHHHHhcCChHHHH
Q 042154 54 RTNTGIYTGTVQRLANAKRFRWIE 77 (377)
Q Consensus 54 ~~~~~~~~~l~~~~~~~~~~~~a~ 77 (377)
|-+...|..+...+...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555555555555553
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.51 E-value=4.6 Score=30.16 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=7.5
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042154 210 SNGRFADAEKIWETMVN 226 (377)
Q Consensus 210 ~~~~~~~a~~~~~~~~~ 226 (377)
..|++.+|.++|+++.+
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 34444444444444433
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.40 E-value=3.2 Score=28.13 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 252 ALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 252 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444555555555666666666666666666666666666
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.99 E-value=0.54 Score=39.36 Aligned_cols=86 Identities=7% Similarity=0.041 Sum_probs=55.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChH
Q 042154 241 DGLAIEKQTKKALELVGEMRSKEINP-DVFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLD 317 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~ 317 (377)
.-|.+.|.+++|++.|...... .| +.+++..-..+|.+...+..|..-.. ...+ ......|.--+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4588899999999999887764 44 77888777888888888777665544 2211 112233444444444556666
Q ss_pred HHHHHHHHHHh
Q 042154 318 FAFNLCKRTFS 328 (377)
Q Consensus 318 ~a~~~~~~~~~ 328 (377)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 66666666665
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=5.5 Score=36.46 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=95.5
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDS 181 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (377)
..-.|+++.|..++..+. ....+.++..+.++|..++|+++-.. ||. -| ....+.|+++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D--------~d~-rF----elal~lgrl~i 655 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTD--------PDQ-RF----ELALKLGRLDI 655 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCC--------hhh-hh----hhhhhcCcHHH
Confidence 344567777766554443 22344456666677777766654221 111 12 23346688888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 182 ANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 877765543 556688888888888888888887766544 33466666677777766666666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCH
Q 042154 262 KEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNK 300 (377)
Q Consensus 262 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (377)
.|.. |. ...+|...|+++++.+++...+--|..
T Consensus 721 ~g~~-N~-----AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 721 QGKN-NL-----AFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred hccc-ch-----HHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 6532 22 233555678888888888744434443
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.83 E-value=3.1 Score=32.32 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=49.6
Q ss_pred HHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCCH
Q 042154 277 GFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE---RCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 277 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
-+.+.|+-+.-.+++. ..+.--++.....|...|. ..+.+++++++.+.++. +-.+|+..+.+|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3455666554445555 3333334555555554444 66788888888777765 2366788888888888888888
Q ss_pred HHHH
Q 042154 352 EEAK 355 (377)
Q Consensus 352 ~~A~ 355 (377)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.49 E-value=0.81 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccCCcee
Q 042154 336 APLQLVVDRLAKELRVEEAKELVELGKTNSYCR 368 (377)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 368 (377)
.+++.|...|...|++++|..+++++.+..-..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 367788888999999999999888876544333
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.26 E-value=0.66 Score=22.40 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 042154 339 QLVVDRLAKELRVEEAKELVE 359 (377)
Q Consensus 339 ~~l~~~~~~~g~~~~A~~~~~ 359 (377)
..+..++...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666654
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.24 E-value=1.9 Score=33.39 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=62.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCH-HHHHHHHHHHHhc
Q 042154 241 DGLAIEKQTKKALELVGEMRSKEINPDV-----FTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNK-AIFKLLVPFVCEK 313 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~~l~~~~~~~ 313 (377)
.-+...|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-.. ...+.|.. ....--..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4477899999999999999886 23322 234444556778888888887766 44444432 2333334578888
Q ss_pred CChHHHHHHHHHHHhcC
Q 042154 314 GDLDFAFNLCKRTFSER 330 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~ 330 (377)
..+++|+.-|+.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998853
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.21 E-value=22 Score=35.69 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=50.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhc
Q 042154 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVF--TFYALIKGFVNE 281 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~ 281 (377)
..+.+.....+++|--.|+..-+. .-.+.+|...|+|.+|+.+..++... -+.. +-..|+.-+...
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 333444455555555555433221 12345566666666666666655421 1211 124455566666
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 282 GNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
+++-+|-++.....-.|.. .+..|++...+++|+.+..
T Consensus 1013 ~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred ccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHH
Confidence 6666666666633222221 2333455555565555543
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.17 E-value=15 Score=33.72 Aligned_cols=88 Identities=14% Similarity=0.262 Sum_probs=65.3
Q ss_pred hhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh-cCChHHHHHHHHHhhhh-c-CCCccchhHHHHHHHHccCCH
Q 042154 32 YKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN-AKRFRWIEEILEHQKQY-K-DISKEGFTARLIALYGKAAMF 108 (377)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~ 108 (377)
.+.|..+.+..+|++.... ++-+...|......+.. .|+.+.....|+.+... | ...+..++...+..-..++++
T Consensus 90 ~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 4678888999999988763 56777777766665554 57778888888887765 2 224556777778777888889
Q ss_pred HHHHHHHHhcCCC
Q 042154 109 ENARKVFDEMPGR 121 (377)
Q Consensus 109 ~~A~~~~~~~~~~ 121 (377)
.....+|+++++.
T Consensus 168 k~v~~iyeRilei 180 (577)
T KOG1258|consen 168 KRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888763
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=11 Score=34.75 Aligned_cols=148 Identities=17% Similarity=0.090 Sum_probs=97.0
Q ss_pred HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (377)
..-.++++.|..++..+. ....+.+...+.++|-.++|+++- +|... -.....+.|+++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~i 655 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDI 655 (794)
T ss_pred HhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHH
Confidence 445678888877655543 223455666677778777776543 22221 2234456788998
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---h
Q 042154 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---K 293 (377)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~ 293 (377)
|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+.-..+-. +
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 887765543 567899999999999999999999987654 4456666777777664444444 3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 294 SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
.| +.|. ..-+|...|+++++.+++..
T Consensus 721 ~g-~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QG-KNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hc-ccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 33 3332 22356778999998888754
No 323
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.64 E-value=12 Score=31.99 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=60.2
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc---cch
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK---EGF 94 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 94 (377)
.|++.+.-.+++-+..+.+-+.-...-... ..+.+.+...+.+.+.....+++..++...-.+.+ ...
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f---------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIF---------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHH---------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhh
Confidence 466666666666666655533221111111 11344555555555555444444433332211111 122
Q ss_pred hHHHHHHHHccCCHHHHHHHHHhcC----C-C-CCCccHHHHHHHHH--HHHhCCChhHHHHHHHhch
Q 042154 95 TARLIALYGKAAMFENARKVFDEMP----G-R-NCEQTVLSFNALLG--ACVNSKKFDEVDGLFKDLP 154 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~A~~~~~~~~----~-~-~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~ 154 (377)
...++..+.+.+++..+...++.-. . . ..+|.......+-. .|...++++.|+.+|....
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 3346667777777666554443211 1 1 12222221111111 1556789999999998876
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.46 E-value=0.76 Score=23.67 Aligned_cols=27 Identities=19% Similarity=-0.045 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 337 PLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 337 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
+|..+...|...|++++|.+.|+++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666777777666666554
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.31 E-value=0.38 Score=24.57 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444455555555555555544
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.25 E-value=12 Score=31.15 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHcC-C-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 179 LDSANTLLYEMEK-KGIRLDLITFNTLLLGFYSN-G-RFADAEKIWETMVN-MNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 179 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
+.+|+++|+...- ..+-.|..+...+++..... + ....-.++.+-+.. .+..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552221 12333555555565555541 1 22222223333321 2234555555666666666666666666
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 255 LVGEMRSK-EINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 255 ~~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+++..... +..-|...|..++......|+..-..++..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66665544 334455566666666666666666666665
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.07 E-value=0.15 Score=37.58 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC
Q 042154 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK 142 (377)
Q Consensus 63 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (377)
++..+.+.+....+..+++.+...+...+..+.+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4556666777777777777777665556677777788888888777777766663222 222345566666677
Q ss_pred hhHHHHHHHhc
Q 042154 143 FDEVDGLFKDL 153 (377)
Q Consensus 143 ~~~a~~~~~~~ 153 (377)
++++.-+|.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777666665
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.71 E-value=1.5 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
.+|..+...|...|++++|.+.|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35777888999999999999999988774
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.69 E-value=1.9 Score=27.61 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=30.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHH
Q 042154 312 EKGDLDFAFNLCKRTFSERCLVDQ--APLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 312 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
...+.++|+..|+..++.-..+.. .++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888887776443322 1556677788888888776654
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.67 E-value=2.7 Score=33.03 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHH
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILE 81 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 81 (377)
++.+.+.+...+|+...+.-.+.. |.+...-..+++.++-.|+|++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344444444444444444333332 3334444444444444444444444433
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.39 E-value=5.1 Score=31.57 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=21.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 042154 171 KAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWE 222 (377)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (377)
+.+.+.+.+++++...+.-.+.+. .|...-..+++.+|-.|++++|..-++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHH
Confidence 333444444444444444333321 133333444444444444444444333
No 332
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.19 E-value=16 Score=31.38 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh---CCChhHHHHH
Q 042154 73 FRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN---SKKFDEVDGL 149 (377)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 149 (377)
.+.-+.+++++.+..+ .+..+.-.++..+.+..+.+...+-++++.... +-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455667777666633 445555567777777777777777777777654 2356666666665443 2235555555
Q ss_pred HHhch
Q 042154 150 FKDLP 154 (377)
Q Consensus 150 ~~~~~ 154 (377)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 55544
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.02 E-value=0.81 Score=25.60 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=15.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 341 VVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 341 l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666665443
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.93 E-value=8.9 Score=28.24 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=8.3
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 042154 210 SNGRFADAEKIWETMVNM 227 (377)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~ 227 (377)
..|++++|.++|+++.+.
T Consensus 56 ~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 56 ARGNYDEAARILRELLSS 73 (153)
T ss_pred HcCCHHHHHHHHHhhhcc
Confidence 444444444444444443
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.77 E-value=17 Score=32.50 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 173 FVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA 252 (377)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (377)
....|+++.+...+....+. +.....+...++....+.|+++.|..+-+.|....+. +..........--..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 45678888887777766544 3335566777777778888888888887777765543 333333333333455677888
Q ss_pred HHHHHHHHhC
Q 042154 253 LELVGEMRSK 262 (377)
Q Consensus 253 ~~~~~~~~~~ 262 (377)
.-.|+++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 8888877654
No 336
>PRK09687 putative lyase; Provisional
Probab=87.26 E-value=16 Score=30.54 Aligned_cols=233 Identities=11% Similarity=-0.014 Sum_probs=115.1
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCH----HHHHHHHHhcCCCCCCccHHHH
Q 042154 55 TNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMF----ENARKVFDEMPGRNCEQTVLSF 130 (377)
Q Consensus 55 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 130 (377)
++.......+..+...|..+ +...+..+... .+...-...+.++...|+. .++...+..+.... ++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHH
Confidence 34445555555555555432 22223333222 1222222355555556542 45666666553222 455555
Q ss_pred HHHHHHHHhCCC-----hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 042154 131 NALLGACVNSKK-----FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205 (377)
Q Consensus 131 ~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (377)
...+.++...+. ...+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 555555554432 1223333333322 2355555566666666665 3455555555543 3445555555
Q ss_pred HHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042154 206 LGFYSNG-RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNL 284 (377)
Q Consensus 206 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 284 (377)
.++.+.+ +...+...+..+... ++...-...+.++.+.|+. .++..+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5665543 234555555555542 4556666666777777763 4555554444432 2 233566667777774
Q ss_pred HHHHHHHH-hcCCCCCHHHHHHHHHHHH
Q 042154 285 EEAKRWYN-KSGCGMNKAIFKLLVPFVC 311 (377)
Q Consensus 285 ~~a~~~~~-~~~~~~~~~~~~~l~~~~~ 311 (377)
+|...+. ...-.||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 4666555 2322446655555555443
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.69 E-value=7.6 Score=26.11 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 252 ALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 252 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+.+-++.+....+.|++....+.+.+|.+.+++..|.++++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444455555555555555555555555555555
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.43 E-value=17 Score=29.84 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
.|..=|..|....+-.+-..++++.+.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 455555666666666666666655543
No 339
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.42 E-value=11 Score=29.94 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC
Q 042154 341 VVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 341 l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 333444455555555555554443
No 340
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=17 Score=30.09 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHH-------hcCCCCCHHHHH
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTF-------YALIKGFVNEGNLEEAKRWYN-------KSGCGMNKAIFK 304 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~ 304 (377)
+.+-..+.+++++|+..+.++...|+..|..+. ..+...|...|+...-.+... ...-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHH
Q 042154 305 LLVPFVCEKGD-LDFAFNLCKRTFSERCLVDQAPLQ-----LVVDRLAKELRVEEAKELVE 359 (377)
Q Consensus 305 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~ 359 (377)
.|+..+-...+ ++.-+++....++-..+-...... -++.++.+.|++.+|..+.+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
No 341
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.36 E-value=10 Score=27.24 Aligned_cols=44 Identities=18% Similarity=0.097 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhh
Q 042154 318 FAFNLCKRTFSERCLVDQ-APLQLVVDRLAKELRVEEAKELVELG 361 (377)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 361 (377)
.+.++|+.|...|+.-.. ..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 888888888888765443 36677778888889999999888764
No 342
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=19 Score=30.41 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 042154 236 YNARLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~ 259 (377)
+-....-||+.|+.+.|++.+++-
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 334445566666666666555444
No 343
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.62 E-value=7.6 Score=36.60 Aligned_cols=119 Identities=14% Similarity=0.216 Sum_probs=68.5
Q ss_pred HHHHHHHhchhhcCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----------HhHHHHHHHHHcC
Q 042154 145 EVDGLFKDLPHKLGIEPD---LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL----------ITFNTLLLGFYSN 211 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~ 211 (377)
+-...+.+|..+ --.|+ ..+...++-.|....+++...++.+.+.+. ||. ..|...++--.+-
T Consensus 181 ~l~~~L~~mR~R-lDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 181 QLNDYLDKMRTR-LDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHhh-cCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 344556666554 22333 335555666677788888888888888765 221 1233333333455
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHH-----HHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042154 212 GRFADAEKIWETMVNMN--VRPNVRS-----YNARL--DGLAIEKQTKKALELVGEMRSKEINPDVF 269 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~--~~~~~~~-----~~~l~--~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 269 (377)
|+-++|+...-.+.+.. +.||... |.-+. ..|...+..+.|.+.|++.-+ +.|+..
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 77888888777776542 4555432 22211 234455667778888888765 355543
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.31 E-value=2.1 Score=23.97 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.+..+|...|+.+.|.+++++....+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36778899999999999999888643
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.97 E-value=18 Score=29.00 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHH
Q 042154 280 NEGNLEEAKRWYN 292 (377)
Q Consensus 280 ~~~~~~~a~~~~~ 292 (377)
..+++.+|+++|+
T Consensus 166 ~leqY~~Ai~iye 178 (288)
T KOG1586|consen 166 QLEQYSKAIDIYE 178 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666665
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.60 E-value=2.2 Score=21.57 Aligned_cols=29 Identities=17% Similarity=-0.105 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 338 LQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 338 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
+-.+..++.+.|++++|.+.|+++.+..+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34567788888999999999988876654
No 347
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.63 E-value=26 Score=29.64 Aligned_cols=131 Identities=16% Similarity=0.218 Sum_probs=74.1
Q ss_pred hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHcCCC
Q 042154 143 FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD--KG----SLDSANTLLYEMEKKGI---RLDLITFNTLLLGFYSNGR 213 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 213 (377)
+++.+.+++.+.+. |+.-+..+|-+....... .. ....+..+++.|++... .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 44566677777665 777777665553333222 22 24567888888887642 2333444444433 2333
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 214 ----FADAEKIWETMVNMNVRPNVR--SYNARLDGLAIEKQ--TKKALELVGEMRSKEINPDVFTFYALIK 276 (377)
Q Consensus 214 ----~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 276 (377)
.+.++.+|+.+.+.|...+.. ..+.++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356677788888777655433 22222222221111 4467788888888888877766654443
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.58 E-value=34 Score=31.02 Aligned_cols=195 Identities=8% Similarity=0.075 Sum_probs=120.6
Q ss_pred CCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHH
Q 042154 89 ISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNT 168 (377)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 168 (377)
+.+....-+++..+.......-.+.+-.+|...| .+-..|..++.+|..+ .-+.-..+++++.+- .-+......
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~---dfnDvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY---DFNDVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh---cchhHHHHH
Confidence 3444455578888888888888888888888876 6788888889988888 567777788776543 233344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--CC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEKKGIR--LD---LITFNTLLLGFYSNGRFADAEKIWETMVN-MNVRPNVRSYNARLDG 242 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 242 (377)
-+-.+...++.+.+...|.++...=++ .+ ...|..+...- ..+.+....+..++.. .|...-...+.-+-.-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444444558888888888877654221 01 12344444322 2356666666666663 2333344556666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN-EGNLEEAKRWYN 292 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~ 292 (377)
|....++++|++++..+.+.. .-|...-..++.-+.. -.+...-.+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~ 264 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLK 264 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHH
Confidence 888888899999888887764 2344444445544332 233334444444
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.44 E-value=25 Score=29.31 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 237 NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
+.....|..+|.+.+|..+.++.+... +.+...+-.++..+...|+--.+.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 334455666666666666666666542 334555556666666666644444333
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.98 E-value=25 Score=28.92 Aligned_cols=183 Identities=11% Similarity=0.117 Sum_probs=96.1
Q ss_pred cCChHHHHHHHHHhhhhcCCCccchh---HHHHHHHHccCCHHHHHHHHHhcCCC---CC--CccHHHHHHHHHHHHhCC
Q 042154 70 AKRFRWIEEILEHQKQYKDISKEGFT---ARLIALYGKAAMFENARKVFDEMPGR---NC--EQTVLSFNALLGACVNSK 141 (377)
Q Consensus 70 ~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~ 141 (377)
..+.++|+.-|++..+........-+ ..++....+.+++++....|.++... .+ .-+..+.|.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34677777777777765433332222 34667777778888877777776421 00 123445566666555555
Q ss_pred ChhHHHHHHHhchhhcCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCC-------HHhHHHHHH
Q 042154 142 KFDEVDGLFKDLPHKLGIEPDL----VSYNTIIKAFVDKGSLDSANTLLYEMEKKGI----RLD-------LITFNTLLL 206 (377)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~~ 206 (377)
+.+-...+|+.-.....-.-+. .|-+.+...|...+++....+++.++.+..- ..| ..+|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 5555555554432211101111 1334556666666777777777766664311 111 234555566
Q ss_pred HHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHH
Q 042154 207 GFYSNGRFADAEKIWETMVNM-NVRPNVRSYNARLDG-----LAIEKQTKKAL 253 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~ 253 (377)
.|....+-.+...+|++.... .--|.+..... |+- ..+.|++++|.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHH
Confidence 666666666666677665531 11233333332 222 23456666665
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.93 E-value=2.4 Score=20.59 Aligned_cols=25 Identities=20% Similarity=-0.028 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 339 QLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 339 ~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
..+...+...|++++|...+++..+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444444445555555555444443
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.98 E-value=28 Score=28.83 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=44.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----H
Q 042154 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGL-----A 244 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~ 244 (377)
|++++..++|.+++...-+..+..-+....+...-|-.|.+.+++..+.++-..-....-.-+...|..++..| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 45666666666666655444433222334445555556666666666666555554321111222344444433 3
Q ss_pred hcCCHHHHHHHH
Q 042154 245 IEKQTKKALELV 256 (377)
Q Consensus 245 ~~~~~~~a~~~~ 256 (377)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 353
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.61 E-value=8.3 Score=30.11 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=22.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 293 KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
.....|++.+|..++..+...|+.++|.+..+++..
T Consensus 137 ~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 137 LLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334456666666666666666666666666666655
No 354
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.43 E-value=24 Score=27.66 Aligned_cols=88 Identities=7% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHhCCChhHHHHHHHhchhhcCCCcCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLGIEPDL-----VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN 211 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (377)
+.++|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|++--.+.++.+.. .......-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 45555555555555554432 12111 12222233444445555554444444443221 122222223344444
Q ss_pred CCHHHHHHHHHHHHhC
Q 042154 212 GRFADAEKIWETMVNM 227 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~ 227 (377)
..++.|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4455555555544443
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=81.37 E-value=5.3 Score=27.71 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 283 NLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+++++.+.+.+.+ -|..|+..|...|..++|++++.+..+
T Consensus 28 ~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4555555554333 477888899999999999999988877
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.23 E-value=5.9 Score=30.23 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcccCCCCccchhhHH---HHHHHHHhcCC-------hHHHHHHHHHhhhhcCCCccchhHHHHHHHHcc
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYT---GTVQRLANAKR-------FRWIEEILEHQKQYKDISKEGFTARLIALYGKA 105 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (377)
++.|.+.++.....+ |.|...++ ..+.-++...+ +++|+.-|++.....+.....+| .+..+|...
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw-~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALW-CLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHH
Confidence 455555555544443 44544433 23333333333 33444444444454444444455 355554433
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.02 E-value=4.9 Score=25.79 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=20.1
Q ss_pred hCCChhHHHHHHHhchhhcCCCcCH-HHHHHHHHHHHHcCCHHHHHH
Q 042154 139 NSKKFDEVDGLFKDLPHKLGIEPDL-VSYNTIIKAFVDKGSLDSANT 184 (377)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 184 (377)
..++.++|+..+....++..-.|+. .++..++.+++..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544432222221 134444455555555554443
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.93 E-value=53 Score=31.40 Aligned_cols=312 Identities=11% Similarity=0.031 Sum_probs=161.6
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN 110 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (377)
..+.|++..+.++...+.... +. .-..|..+...+ ....+++....+++-.. .+....+-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~p-L~-~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYP-LY-PYLEYRQLTQDL-MNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCC-cH-hHHHHHHHHhcc-ccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHH
Confidence 345788888888777664322 11 111222222211 12245555555544222 12223333445556667788887
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHH--HHHHHHH
Q 042154 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDS--ANTLLYE 188 (377)
Q Consensus 111 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~--a~~~~~~ 188 (377)
..+.+..- +.+...-.....+....|+.++|......+-.. | ...+..++.++..+.+.|.+.. ..+-+..
T Consensus 118 ~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 118 LLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-G-KSLPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 77633221 345555566778888889887777777666543 2 2234456777777776664432 2222222
Q ss_pred HHHCCCCCCHHhHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHH
Q 042154 189 MEKKGIRLDLITFNTLLLGFYS------------NGRFADAEKIWETMVNMNVRPNVRSYNARLDGL--AIEKQTKKALE 254 (377)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~ 254 (377)
+...| +...-..+...+.. ..+...+...+. .++|+...-..++.++ ....+.+.|..
T Consensus 191 al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 191 AMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 22222 22222222221100 001111111111 1122322222222222 23456788999
Q ss_pred HHHHHHhC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 255 LVGEMRSK-EINPDV--FTFYALIKGFVNEGNLEEAKRWYNK-SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 255 ~~~~~~~~-g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
++...... +..+.. .....+.......+...+|...+.. .....+......-+......++++.+...+..|....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 99887544 232222 2334444334444335677777762 2222355555555666668999999988888875532
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 331 CLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
-. ...-..-+..++...|+.++|..+|+++..
T Consensus 343 ~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 343 KE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22 333344577787889999999999998754
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.73 E-value=10 Score=34.80 Aligned_cols=150 Identities=9% Similarity=-0.050 Sum_probs=84.1
Q ss_pred cchhhHHHHHHHHHhc--CChHHHHHHHHHhhhhcCCCccchhHHHHHHH-HccCCHHHHHHHHHhcCCCCCCccHHHHH
Q 042154 55 TNTGIYTGTVQRLANA--KRFRWIEEILEHQKQYKDISKEGFTARLIALY-GKAAMFENARKVFDEMPGRNCEQTVLSFN 131 (377)
Q Consensus 55 ~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 131 (377)
|+..+...++.-.... ..-+-+-.++..|. +...|.-...| +...| .-.|+...|...+............+...
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 4554555444433332 11223333333333 32333333333 33333 44578888887777665443222333444
Q ss_pred HHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 042154 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFY 209 (377)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (377)
.|.+...+.|..-.|-.++.+...- . ...+-++..+.+++....+++.|++.|+++.+.... +...-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 5666667777777777777766543 1 334457777788888888888888888888776433 5555555555444
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.63 E-value=9.5 Score=29.78 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=20.1
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
...|++.+|..++.++...|+.++|.++..++...
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33556666666666666666666665555555543
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.29 E-value=55 Score=31.15 Aligned_cols=190 Identities=14% Similarity=0.071 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC--CHHhHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCCCHH---
Q 042154 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEK-KGIRL--DLITFNTLLLGFY-SNGRFADAEKIWETMVNMNVRPNVR--- 234 (377)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 234 (377)
+...|..+|.. |++.++.+.+ ..++| +..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44456666543 4555555552 22333 2345555566555 5667888888887665332222221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH------hcCCCCCHH
Q 042154 235 --SYNARLDGLAIEKQTKKALELVGEMRSK----EINPDVFTFYAL-IKGFVNEGNLEEAKRWYN------KSGCGMNKA 301 (377)
Q Consensus 235 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~------~~~~~~~~~ 301 (377)
....++..+.+.+... |...+++..+. +..+-...+..+ +..+...++...|.+.++ .....|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234455665655555 77777776554 111222233333 222223378888888887 112244445
Q ss_pred HHHHHHHHH--HhcCChHHHHHHHHHHHhcCC---------CCChhhHHHHHHHH--HhcCCHHHHHHHHHhh
Q 042154 302 IFKLLVPFV--CEKGDLDFAFNLCKRTFSERC---------LVDQAPLQLVVDRL--AKELRVEEAKELVELG 361 (377)
Q Consensus 302 ~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 361 (377)
++..++.+. .+.+..+++.+.++++..... .|-..+|..+++.+ ...|+++.+...++++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555543 345656777777776643321 22344566666644 4577766666555444
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.76 E-value=31 Score=27.91 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 042154 211 NGRFADAEKIWETMVNMNVRPNV-RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVF-TFYALIKGFVNEGNLEEAK 288 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~ 288 (377)
..+++.|...|.+.+..+ |+. .-|+.-+..+.+..+++.+..--.+.++ +.|+.. .-..+..++.....+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 344555555555444432 444 3344444555555555555544444443 233332 2223334444445555555
Q ss_pred HHHH
Q 042154 289 RWYN 292 (377)
Q Consensus 289 ~~~~ 292 (377)
..+.
T Consensus 99 ~~Lq 102 (284)
T KOG4642|consen 99 KVLQ 102 (284)
T ss_pred HHHH
Confidence 5444
No 363
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.48 E-value=17 Score=30.91 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 135 GACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
+-|.+.|.+++|++.|..-. ...| +.+++..-..+|.+...+..|+.=-..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 44666777777777776654 3344 66666666667777666665554444443
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.33 E-value=66 Score=31.46 Aligned_cols=265 Identities=15% Similarity=0.090 Sum_probs=144.0
Q ss_pred HHHHHHHccCCHHHHHHHHHhc----CCC-----------CCCccHHH-HH--HHHHH--HHhCCChhHHHHHHHhchhh
Q 042154 97 RLIALYGKAAMFENARKVFDEM----PGR-----------NCEQTVLS-FN--ALLGA--CVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~----~~~-----------~~~~~~~~-~~--~l~~~--~~~~~~~~~a~~~~~~~~~~ 156 (377)
..|....+.|+++.|..++++. ... ++|++... .. .+..+ .....++++|..+..++...
T Consensus 365 eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 365 EAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3555666788888888777765 111 11221111 11 12222 34567899999988887543
Q ss_pred cCC---CcCH---HHHHHHH-HHHHHcCCHHHHHHHHHHHHHC----CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 157 LGI---EPDL---VSYNTII-KAFVDKGSLDSANTLLYEMEKK----GIRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 157 ~~~---~p~~---~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
.+- .+.. ..++.+- ......|+++.|.++-+..... -..+....+..+..+..-.|++++|..+..+..
T Consensus 445 l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 445 LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 221 1111 1344332 2345678999999988877754 233455667777788888999999999887766
Q ss_pred hCCCCCCHHHH---HHHH--HHHHhcCCHH--HHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 042154 226 NMNVRPNVRSY---NARL--DGLAIEKQTK--KALELVGEMRSK--EIN----PDVFTFYALIKGFVN-EGNLEEAKRWY 291 (377)
Q Consensus 226 ~~~~~~~~~~~---~~l~--~~~~~~~~~~--~a~~~~~~~~~~--g~~----p~~~~~~~l~~~~~~-~~~~~~a~~~~ 291 (377)
+..-.-+...+ ..+. ..+...|+.. +.+..|...... +-. +-..+...+..++.+ .+...++..-+
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~ 604 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGI 604 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcc
Confidence 54222233333 2222 2345566332 233333333222 111 223455556666555 12223333333
Q ss_pred H-hcCCCCCH--HH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh----hHHHHHH--HHHhcCCHHHHHHHHHh
Q 042154 292 N-KSGCGMNK--AI--FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA----PLQLVVD--RLAKELRVEEAKELVEL 360 (377)
Q Consensus 292 ~-~~~~~~~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~--~~~~~g~~~~A~~~~~~ 360 (377)
+ .....|.. .. +..|+......|+.++|...+.++......+... +-...+. .....|+.++|...+.+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 605 EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3 11122222 22 2367778889999999999998887654333222 2222222 23468888888877766
Q ss_pred h
Q 042154 361 G 361 (377)
Q Consensus 361 ~ 361 (377)
-
T Consensus 685 s 685 (894)
T COG2909 685 S 685 (894)
T ss_pred c
Confidence 3
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.33 E-value=16 Score=26.03 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=16.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
.+....+.|++.....-+.+|.+-+++..|.++++
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE 108 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILE 108 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33333444444444444444444444444444444
No 366
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.80 E-value=1.6 Score=36.74 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=43.7
Q ss_pred cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHH
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARK 113 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 113 (377)
.|.++.|++.|...+..+ ++....|..-.+++.+.++...|++=+......+......+- .--.+..-.|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk-frg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK-FRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc-hhhHHHHHhhchHHHHH
Confidence 455556666665555544 455555555555555555555555555555444322221111 12222333455555555
Q ss_pred HHHhcCCCCCCc
Q 042154 114 VFDEMPGRNCEQ 125 (377)
Q Consensus 114 ~~~~~~~~~~~~ 125 (377)
.+....+.++.+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 555555554433
No 367
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=78.79 E-value=32 Score=27.51 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=9.2
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 042154 275 IKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~ 292 (377)
+......|+.++|.+.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 334445555555555555
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.79 E-value=40 Score=28.67 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 133 LLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
+.-+..+.|+..+|.+.|+.+.+...+..-......++.++....-+.++..++.+..+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444445567777777777776554211111123445666666666666666666555443
No 369
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.62 E-value=21 Score=25.43 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 110 NARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 110 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
+..+-++.+...++.|++.....-++++.+.+|+..|..+|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555666666677777777777777777777777777777776554
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.00 E-value=54 Score=28.71 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=70.4
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc-----------------------
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK----------------------- 87 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------- 87 (377)
+...+|++.-..+++. .|-...++-.+...+...|+.+.|.++++++.-.-
T Consensus 20 ~v~~~Dp~~l~~ll~~------~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 20 AVQSHDPNALINLLQK------NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HHHccCHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC
Confidence 3445677777766532 25677788889999999999999988888764210
Q ss_pred --CCCccchhH---HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH-hCCChhHHHHHHHhc
Q 042154 88 --DISKEGFTA---RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACV-NSKKFDEVDGLFKDL 153 (377)
Q Consensus 88 --~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 153 (377)
...+..+|. ..+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++-.+++++..
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 011222221 234555666677777777666666653335555555555543 445566566666554
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.98 E-value=46 Score=27.93 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=68.7
Q ss_pred hCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----
Q 042154 139 NSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS---- 210 (377)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 210 (377)
..+++..+...+...... + +......+...+.. ..+...|.+++..+-+.|.. .....|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~-~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL-G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhc-C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 455667777777666432 1 12233333333332 23566677777766555432 222334444443
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 042154 211 NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK-------QTKKALELVGEMRSKEINPDVFTFYALIKGFVN--- 280 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--- 280 (377)
..+..+|...|++..+.|..+.......+...|..-. +...|...|.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 2366777777777777664322222333333333321 2224666666665554 22233333333322
Q ss_pred -cCCHHHHHHHHH
Q 042154 281 -EGNLEEAKRWYN 292 (377)
Q Consensus 281 -~~~~~~a~~~~~ 292 (377)
..+..+|...|.
T Consensus 203 v~~d~~~A~~wy~ 215 (292)
T COG0790 203 VPRDLKKAFRWYK 215 (292)
T ss_pred CCcCHHHHHHHHH
Confidence 235556666665
No 372
>PRK10941 hypothetical protein; Provisional
Probab=75.29 E-value=28 Score=28.94 Aligned_cols=75 Identities=9% Similarity=-0.015 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHH
Q 042154 131 NALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKG-IRLDLITFNTLLLGF 208 (377)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 208 (377)
+.+-.+|.+.++++.|+.+.+.+.. +.|+ +.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3344456666777777777666653 2333 3334444555666666666666666665432 233444444444433
No 373
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.00 E-value=25 Score=33.04 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 245 IEKQTKKALELVGEMRSKEINPDVFTFYALI 275 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 275 (377)
+.|++.+|.+.+-.+...+..|...-...|.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 3466666666666666655555544443333
No 374
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.78 E-value=53 Score=28.04 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 179 LDSANTLLYEMEKKGI----RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776422 345556666777777777766655555555543 466777778888888888888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcC--CHHHHHHHHH
Q 042154 255 LVGEMRSKE-INPDVFTFYALIKGFVNEG--NLEEAKRWYN 292 (377)
Q Consensus 255 ~~~~~~~~g-~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~ 292 (377)
+++.....+ +++.. .. .++.++...+ ..+.+.+++.
T Consensus 223 ~l~~~l~~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HH-HHHHHHhcCChhhHHHHHHHHH
Confidence 888887754 43332 33 3344444233 3477777777
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.35 E-value=51 Score=27.62 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELG 361 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 361 (377)
.....|..+|.+.+|.++.++.+..+. .+...+..|+..|...|+--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334456666666666666666655432 24455556666666666655554444444
No 376
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.27 E-value=25 Score=23.97 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042154 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE 263 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 263 (377)
..+.+.|++++|..+.+.+ ..||...|.++... +.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3455566666666655444 24666666554332 4555555555555555554
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.03 E-value=84 Score=29.98 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCC--HHHHHHHHH-HHHhcCC-----------hHHHHHHHHHHHhcCC------C
Q 042154 273 ALIKGFVNEGNLEEAKRWYNKSGCGMN--KAIFKLLVP-FVCEKGD-----------LDFAFNLCKRTFSERC------L 332 (377)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~-~~~~~g~-----------~~~a~~~~~~~~~~~~------~ 332 (377)
....-+...|+++.|..+|.-.+ ..+ ....+.++. +...... ...|.++.+.....+. .
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 34445667889999999988333 111 123333333 3332222 3345555544433221 1
Q ss_pred CChhhHHHHHH-----HHHhcCCHHHHHHHHHhhc
Q 042154 333 VDQAPLQLVVD-----RLAKELRVEEAKELVELGK 362 (377)
Q Consensus 333 ~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~ 362 (377)
....|+..|++ -+...|++++|.+.+++..
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 12335555544 3467999999999888764
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.30 E-value=87 Score=29.86 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=36.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh--
Q 042154 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE-INPDVFTFYALIKGFVN-- 280 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~-- 280 (377)
....+.-.|.++.|.+.+-.. .+...+.+++.+.+..|.-.+-.+... ..+.... -.|....+..|+..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 344555678888888887761 122344455444444332222111111 3332221 01122557777777775
Q ss_pred -cCCHHHHHHHHH
Q 042154 281 -EGNLEEAKRWYN 292 (377)
Q Consensus 281 -~~~~~~a~~~~~ 292 (377)
..+..+|.+++-
T Consensus 339 ~~td~~~Al~Y~~ 351 (613)
T PF04097_consen 339 EITDPREALQYLY 351 (613)
T ss_dssp TTT-HHHHHHHHH
T ss_pred hccCHHHHHHHHH
Confidence 468888888888
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.66 E-value=12 Score=31.29 Aligned_cols=44 Identities=36% Similarity=0.370 Sum_probs=30.9
Q ss_pred CCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 042154 159 IEPDLV-SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202 (377)
Q Consensus 159 ~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (377)
+.||.. -|+..|....+.||+++|+++++++.+.|..--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345555 45677888888888888888888888887764444443
No 380
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.94 E-value=4.2 Score=34.34 Aligned_cols=94 Identities=16% Similarity=-0.013 Sum_probs=70.8
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHH-HHHHHHHHHHHcCCHH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLV-SYNTIIKAFVDKGSLD 180 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~ 180 (377)
....|.++.|++.|...+..+ ++....|..-.+++.+.+++..|+.=+.... .+.||.. -|-.--.+....|+|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchH
Confidence 345788999999999988876 5667777777888889999988888877665 4456654 4444455666788999
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 042154 181 SANTLLYEMEKKGIRLDLI 199 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~ 199 (377)
+|...|....+.++.+...
T Consensus 200 ~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHHHhccccHHHH
Confidence 9999999998887655443
No 381
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.44 E-value=31 Score=25.49 Aligned_cols=62 Identities=23% Similarity=0.167 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 220 IWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
+.+.+.+.|++++. --..++..+...++.-.|.++++++.+.+...+..|...-+..+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34445566655542 233455666666666777777777777665555555555556665555
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.41 E-value=7.3 Score=23.76 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhc
Q 042154 340 LVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 340 ~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
.++.+|...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35566666666666666665543
No 383
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.23 E-value=28 Score=23.22 Aligned_cols=31 Identities=10% Similarity=-0.040 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 042154 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86 (377)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 86 (377)
|...--.+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444444455555555555544444433
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.85 E-value=29 Score=28.44 Aligned_cols=61 Identities=18% Similarity=0.078 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEK----KG-IRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
..-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344566788888888888888888752 22 34455667777888888888888777665554
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.69 E-value=40 Score=24.87 Aligned_cols=51 Identities=4% Similarity=0.070 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042154 298 MNKAIFKLLVPFVCEKGD-LDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKE 348 (377)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (377)
.+...|.+++.+..+..- ---+..+|+-+.+.+.++++.-|..++.++.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355567777777755554 334566777777767777777888888776654
No 386
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.67 E-value=67 Score=27.40 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEM 189 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (377)
.+......|++.||.+.|++.+.+.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444445555666655555555443
No 387
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.64 E-value=5.3 Score=28.66 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 212 GRFADAEKIWETMVNMNVRPNVRSYNARLD 241 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (377)
|.-..|..+|.+|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 334455555555555555443 3444443
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.96 E-value=1.2e+02 Score=30.10 Aligned_cols=182 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHcCCCH--HHHHHHHHHHHhCCCCCCHHHHHH--
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEK---KGIRLDLITFNTLLLGFYSNGRF--ADAEKIWETMVNMNVRPNVRSYNA-- 238 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 238 (377)
|..|+..|...|+.++|++++.+..+ ..-.--..-+..++..+.+.+.. +-.++.-....+.........+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 042154 239 ----------RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN-----------------LEEAKRWY 291 (377)
Q Consensus 239 ----------l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 291 (377)
-+-.|......+-+..+++.+....-.++..-.+.++..|...=+ .+.....+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred H---------hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------------cCCCCChhhHHHHHHHHHh
Q 042154 292 N---------KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS-------------ERCLVDQAPLQLVVDRLAK 347 (377)
Q Consensus 292 ~---------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~ 347 (377)
+ .....|....|....-.+.+.|+-++|+.++-..+. ....++...|..++..|..
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
No 389
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=69.95 E-value=36 Score=25.91 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL 349 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (377)
++.-.|.++++.+.+.+..++..|...-+..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334444455555544444444444444444444444
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.80 E-value=25 Score=23.52 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=14.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+.......|++++|.+.+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334455667777777776666654
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.00 E-value=19 Score=20.53 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042154 308 PFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVD 343 (377)
Q Consensus 308 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (377)
....+.|-..++..++++|.+.|+..++..+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345677888899999999999998888888876654
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.82 E-value=58 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCL 332 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 332 (377)
..-.+.....+.|+.++|.+.|.+++..+-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3344566778999999999999999887543
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.47 E-value=33 Score=22.98 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 042154 274 LIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~ 292 (377)
+.......|++++|...++
T Consensus 47 lA~~~~~~G~~~~A~~~l~ 65 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALE 65 (94)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3344455666666666655
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.02 E-value=35 Score=27.96 Aligned_cols=57 Identities=16% Similarity=-0.012 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFSE----R-CLVDQAPLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
..+...|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+-=+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556677777777777777776432 2 223334555666677777777776655433
No 395
>PRK10941 hypothetical protein; Provisional
Probab=67.81 E-value=52 Score=27.37 Aligned_cols=59 Identities=10% Similarity=-0.069 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcC
Q 042154 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMP 119 (377)
Q Consensus 60 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 119 (377)
.+.+-.++.+.++++.|++..+.+....+... .-..--.-.|.+.|.+..|..=++...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDP-YEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455556666666666666666665532211 112234445666666666665555443
No 396
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.38 E-value=59 Score=29.00 Aligned_cols=203 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHhchhhcCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHcCCCHHHHHHHHH
Q 042154 147 DGLFKDLPHKLGIEPDLVS--YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLI--TFNTLLLGFYSNGRFADAEKIWE 222 (377)
Q Consensus 147 ~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 222 (377)
.++++.+.+. |..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHH-hcCCCCC
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY--ALIKGFVNEGNLEEAKRWYN-KSGCGMN 299 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~-~~~~~~~ 299 (377)
.-....-..+..-.+.+..+..... .++++.+.+.|..|+..... ..+...+..|+.+-+..+++ ...+...
T Consensus 90 ~~~~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~ 164 (413)
T PHA02875 90 LGKFADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE 164 (413)
T ss_pred cCCcccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 300 KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
...-...+...+..|+.+-+.-+++.-...... +..-...++......|+.+-+.-+++.
T Consensus 165 d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~-~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 165 DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF-GKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcC-CCCCCchHHHHHHHcCCHHHHHHHHHC
No 397
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.21 E-value=33 Score=22.62 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHH
Q 042154 246 EKQTKKALELVGEMR 260 (377)
Q Consensus 246 ~~~~~~a~~~~~~~~ 260 (377)
.|+.+.|..++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.90 E-value=92 Score=27.56 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHH--cCCCHHHHHHHHHHHHhC
Q 042154 172 AFVDKGSLDSANTLLYEMEKKGIRLDLI--TFNTLLLGFY--SNGRFADAEKIWETMVNM 227 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 227 (377)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445777888888888887775 444443 3333444433 455677777777776654
No 399
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.90 E-value=37 Score=23.04 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHH
Q 042154 73 FRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSF 130 (377)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 130 (377)
.....+.++++...+....+.....|.-.|++.|+.+.|.+-|+.=+.. -|...+|
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~f 108 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVF 108 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhH
Confidence 4444556666666655555566666777788888888888877765443 2444444
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.87 E-value=34 Score=22.59 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042154 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (377)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 355667777777654 33333333333335678888888888887 54 3 46777778777777655543
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.68 E-value=20 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=8.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 042154 169 IIKAFVDKGSLDSANTLLYEM 189 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~ 189 (377)
+|.++...|++++|.+.++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 402
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.56 E-value=1e+02 Score=28.06 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=66.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhcCCCCChhhH
Q 042154 265 NPDVFTF-YALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFV---CEKGDLDFAFNLCKRTFSERCLVDQAPL 338 (377)
Q Consensus 265 ~p~~~~~-~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 338 (377)
.|+..++ +.++..+...|...+|+..+. ..--+|....|..+|..- ..+| ..-+.++|+.|...- ..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f-g~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREF-GADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh-CCChHHH
Confidence 3454443 456677778888999999998 333345666777777632 2333 777888888888762 2578888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 339 QLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 339 ~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
.-.+.--...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7777766788888877776666544
No 403
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.46 E-value=17 Score=26.89 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=30.3
Q ss_pred hhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCC
Q 042154 83 QKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK 141 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (377)
+++.|...+..-. .++..+...++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 12 lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444333 355555555555666666666666554444444444445555554
No 404
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.31 E-value=58 Score=25.08 Aligned_cols=73 Identities=23% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHhHHHHHHHHHcCC----C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 181 SANTLLYEMEKKGIRLD-LITFNTLLLGFYSNG----R-------FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ 248 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (377)
+|..-|++.+.. .|+ ..++..+..+|...+ + +++|...|++..+. .|+...|+.-+...
T Consensus 53 dAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 53 DAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH-----
Confidence 333444444443 233 345555555554432 2 45555555555554 47888888776665
Q ss_pred HHHHHHHHHHHHhCC
Q 042154 249 TKKALELVGEMRSKE 263 (377)
Q Consensus 249 ~~~a~~~~~~~~~~g 263 (377)
++|-++..++.+.+
T Consensus 124 -~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 -AKAPELHMEIHKQG 137 (186)
T ss_dssp -HTHHHHHHHHHHSS
T ss_pred -HhhHHHHHHHHHHH
Confidence 34666666666654
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.06 E-value=75 Score=29.58 Aligned_cols=115 Identities=14% Similarity=-0.022 Sum_probs=74.7
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 160 EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR 239 (377)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (377)
.|--...|...-.+.-.|+...|.+.+..+......-.-+....|.+.+.+.|-...|-.++.+..... .....++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 343333333333344578888888888877654333334445567777777777788888887777654 3445677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 240 LDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 276 (377)
.+++....++++|++.|++..+.. +.+...-+.|..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 888888899999999999887763 223444444443
No 406
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.75 E-value=50 Score=24.07 Aligned_cols=66 Identities=6% Similarity=0.022 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHH--hcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 265 NPDVFTFYALIKGFVNEGN---LEEAKRWYN--KSGCGMNK--AIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 265 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~--~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.++..+--.+..++.+..+ ..+.+.+++ -..-.|.. .....|.-++.+.+++++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4555555566777776554 556666777 11223322 223334457888999999999988888753
No 407
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.92 E-value=1.4e+02 Score=28.94 Aligned_cols=153 Identities=9% Similarity=0.106 Sum_probs=75.9
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCcc---chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHc
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRT---NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGK 104 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (377)
++.+.+.+.+++|+++.+..... .| -.......|..+...|++++|-...-.|... +..-|..-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 45566677777777766654322 22 2334556666666677777776665555432 22223233334444
Q ss_pred cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh--------cCCCc-------CHHHHHHH
Q 042154 105 AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK--------LGIEP-------DLVSYNTI 169 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~p-------~~~~~~~l 169 (377)
.++.... +.-+.......+...|..++..+.. .+...-.++....... ....| +...-..|
T Consensus 436 ~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 436 LDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred ccccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Confidence 4433222 2222222212456677777777766 3333333333332110 00111 11223346
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 042154 170 IKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
+..|...++++.|++++-...+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 6667777777777777766653
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.59 E-value=75 Score=28.08 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=40.5
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHH--HHHHHHHHHH--hCCChhHHHHHHHhchhh
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVL--SFNALLGACV--NSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 156 (377)
.+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556889999999999998876 555544 4555555544 456788898888877543
No 409
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=64.20 E-value=6.2 Score=24.16 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHhcccCCCCccchh
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTG 58 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~ 58 (377)
.-+++.|+..|..+...+.+||++.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3478899999999988887888764
No 410
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.18 E-value=22 Score=31.71 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccC
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAA 106 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (377)
-...+...+.++.|+.++.++.+.. +-.+..|..-..++.+.+++..|+.=...+.+..+.....++ .-..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~-rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYV-RRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheee-eccHHHHhHH
Confidence 3455667889999999999998765 334555555567788889998888887777776543333333 3455666667
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGAC 137 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (377)
.+.+|...|+..... .|+..-...++.-|
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 788888888887764 36666666555544
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.04 E-value=18 Score=30.20 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042154 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTF 271 (377)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 271 (377)
|+.-|..-.+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666667777777777776666655433444
No 412
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=63.92 E-value=49 Score=23.40 Aligned_cols=107 Identities=14% Similarity=0.230 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhc
Q 042154 74 RWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDL 153 (377)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (377)
+.+..+++.+...|...+..+....+....+.+. .....+-.++.+.|++++. ....+. .....+.|..+..+-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi~~~~--i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGIDREI--IEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HHH--HHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCCChHH--HHHHHH---HhhHHHHHHHHHHHH
Confidence 4455666677777777776666666666554222 2234455566666644332 222222 222233455555544
Q ss_pred hhhcCCCcCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 042154 154 PHKLGIEPDLVSYNTIIKAFVDKG-SLDSANTLL 186 (377)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~ 186 (377)
.......++......++..+.+.| +++.+..++
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi 116 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVI 116 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHC
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 333222345555555555555555 334444333
No 413
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.77 E-value=45 Score=29.24 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCh---HHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 042154 60 YTGTVQRLANAKRF---RWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA 136 (377)
Q Consensus 60 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (377)
-..+++.+...++. -+|+-+++...... +.+..+--.+++.|...|-.+.|...|..+.-..+.-|...|..+=+
T Consensus 183 ~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r- 260 (365)
T PF09797_consen 183 AHSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDR- 260 (365)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHH-
Confidence 34555555555543 45566666665543 23333333588888889999999999988876665555555543322
Q ss_pred HHhCCC--------hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 042154 137 CVNSKK--------FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYE 188 (377)
Q Consensus 137 ~~~~~~--------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (377)
+...|. .+.+..+|.....+ ..-.+....+.|.+.+..++.+-
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~fy~~~~~~---------~~e~i~~af~~gsysKi~ef~~F 311 (365)
T PF09797_consen 261 LSTLGPFKSAPENLLENALKFYDNSEKE---------TPEFIIKAFENGSYSKIEEFIEF 311 (365)
T ss_pred HhccCcccccchHHHHHHHHHHHHHHHH---------HHHHHHHHHhCCCchhHHHHHHH
Confidence 222222 23344444443221 22224445577777666665543
No 414
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=63.58 E-value=1.3e+02 Score=30.49 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKG--SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 165 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
-...++.+|++.+ ++++|+..+.++.+. +...-...+...+-. -.+.++|+..+.. =|.. -+++-|
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~fL---vDvn~Ly~~ALG~---YDl~--Lal~VA 881 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCFL---VDVNKLYDVALGT---YDLE--LALMVA 881 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHheee---ccHHHHHHHHhhh---cCHH--HHHHHH
Confidence 4556677777777 778888888877765 222222222222211 1223333333221 0100 122333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
-..+.|+.+=+-.++++.+. +|+..-|. |+. ..+++++|++.+.
T Consensus 882 q~SQkDPKEYLPfL~~L~~l--~~~~rry~--ID~--hLkRy~kAL~~L~ 925 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKL--PPLYRRYK--IDD--HLKRYEKALRHLS 925 (928)
T ss_pred HHhccChHHHHHHHHHHHhC--Chhheeee--Hhh--hhCCHHHHHHHHH
Confidence 34556777777777777663 33332222 222 3577888877654
No 415
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=63.54 E-value=52 Score=23.57 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHh
Q 042154 317 DFAFNLCKRTFSERCLVDQA-PLQLVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 360 (377)
+...++|..|...++-.... .|......+-..|++.+|.++++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34567788888887654443 456667777788888888888764
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.51 E-value=66 Score=28.56 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH-----hcC---
Q 042154 236 YNARLDGLAIEKQTKKALELVGEMRS-------KEINPD-----VFTFYALIKGFVNEGNLEEAKRWYN-----KSG--- 295 (377)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~--- 295 (377)
...++.++....++.+.++..+.... .|..|- -.+...|++.++-.||+..|+++++ ..+
T Consensus 78 VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~ 157 (404)
T PF10255_consen 78 VLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT 157 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc
Confidence 33445556666666665555544211 111111 1233566677777888888888877 111
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 296 -CGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 296 -~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+.+ ...++-.+.-+|.-.+++.+|.++|...+-
T Consensus 158 ~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 158 KVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 233555666677777888888888776654
No 417
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=63.50 E-value=66 Score=24.69 Aligned_cols=109 Identities=12% Similarity=0.166 Sum_probs=49.2
Q ss_pred HHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 77 EEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
.+++..+...+...+..+....+..-.+.| ..-..+.+++.+.| .+..+-...+..+......+.|..++..-...
T Consensus 55 e~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG--i~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~ 130 (174)
T COG2137 55 EEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG--IDDEIIEEALELIDEEDEQERARKVLRKKFKR 130 (174)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC--CCHHHHHHHHhccchHHHHHHHHHHHHHHhCc
Confidence 344444444455555555544555544444 33445555555556 33334444444444444444555554443333
Q ss_pred cCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 042154 157 LGIEPDLVSYNTIIKAFVDKG-SLDSANTLLYEM 189 (377)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 189 (377)
.+..|+..-...+.+.+.+.| .++.+..++..+
T Consensus 131 ~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 131 ENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 233344444444444444444 333444444333
No 418
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=63.00 E-value=1.8e+02 Score=29.45 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=50.9
Q ss_pred HHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHH-------HHHhcCC---hHHHHHHHHHhhhhcCCCccch
Q 042154 25 GSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQ-------RLANAKR---FRWIEEILEHQKQYKDISKEGF 94 (377)
Q Consensus 25 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~ 94 (377)
.++=+++.....+++|+..|+++... +|...+.|....+ -....|+ +++|+.-|+.+......|-+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 34447778888899999999988754 4555555544332 2222333 5555555555544322222222
Q ss_pred hHHHHHHHHccCCHHHHHHHHHhcCC
Q 042154 95 TARLIALYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 120 (377)
- -...|-+.|++++-.+.+....+
T Consensus 557 ~--~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 557 G--KALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred h--HHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 33446667777766665555443
No 419
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=62.92 E-value=32 Score=20.96 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=24.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-----HhcCCHHHHHHH
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL-----AKELRVEEAKEL 357 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~ 357 (377)
+...|++-+|.++++.+-.....+....+..+|... .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445666666666666665433333444455554432 345666666554
No 420
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.54 E-value=81 Score=28.03 Aligned_cols=97 Identities=10% Similarity=0.131 Sum_probs=59.3
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-------hCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 042154 196 LDLITFNTLLLGFYSNGRFADAEKIWETMV-------NMNVRP-----NVRSYNARLDGLAIEKQTKKALELVGEMRSK- 262 (377)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 262 (377)
.+......++..+....+..+..+..+... +.|..| .-.+.-.+++.++-.|++..|+++++.+.-.
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 344444445555665555555544444321 111111 1123445678889999999999999876422
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 263 -----EINP-DVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 263 -----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
.+++ ...++..+.-+|.-.+++..|.+.|.
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~ 188 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFS 188 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 23466777778888999999999988
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.43 E-value=1.1e+02 Score=26.76 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=46.2
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHhhcc
Q 042154 299 NKAIFKLL---VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA-KELRVEEAKELVELGKT 363 (377)
Q Consensus 299 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 363 (377)
|...|.++ +..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 4577888889999999888888776657776667777664 67777777777776544
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.36 E-value=30 Score=21.37 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=28.6
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN 69 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (377)
|....++.++...++..-.+.++..+.++.+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 4455666677777766667777777777766662 344445555554443
No 423
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.61 E-value=1.6e+02 Score=28.29 Aligned_cols=55 Identities=9% Similarity=-0.033 Sum_probs=27.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042154 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (377)
-+....+.++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334445566666666666554321 112222233445545566666666666665
No 424
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=60.56 E-value=4.6 Score=23.47 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHhcccCCCCccchh
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTG 58 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~ 58 (377)
.-+++.|+..|..+...|.+||++.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHhc
Confidence 3477899999999999988888764
No 425
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.23 E-value=1e+02 Score=25.83 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc-----
Q 042154 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVN----SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK----- 176 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 176 (377)
.+...|.++|...-+.| .......|...|.. ..+..+|..+|.+..+. |..+...+...+...+..-
T Consensus 91 ~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhc
Confidence 34666777777666655 22233334444433 23566677777666443 4333222222333333221
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 042154 177 G--SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS----NGRFADAEKIWETMVNMN 228 (377)
Q Consensus 177 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 228 (377)
- +...|...+.++...+ +......+...|.. ..+..+|...|....+.|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 0 2235666666666554 33333333333322 235666666666666665
No 426
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.15 E-value=1.4e+02 Score=27.26 Aligned_cols=153 Identities=15% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHhCCChhHHHHHHHhchhhcCCCcCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH--HHHH
Q 042154 136 ACVNSKKFDEVDGLFKDLPHKLGIEPDL--------VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITF--NTLL 205 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~ 205 (377)
+-.-.|+..+|++-...|.+...-.|.+ .....+...|+..+.++.|+..|....+.-...|...+ ..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 3345789999999888887654444542 12233344556788999999999888765333344333 3355
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH------H--HHH--HHhcCCHHHHHHHHHHHHhCCCC-----CCHHH
Q 042154 206 LGFYSNGRFADAEKIWETMVNMNVRPNVRSYNA------R--LDG--LAIEKQTKKALELVGEMRSKEIN-----PDVFT 270 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------l--~~~--~~~~~~~~~a~~~~~~~~~~g~~-----p~~~~ 270 (377)
..|.+.|+.+.-.++++.+-. ++..++.. + +.+ ....+++.+|...+.+-.+..-. ...-.
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 678888877666666555432 22222211 1 111 23678999999998887664211 11122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 042154 271 FYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
...|-..+...|+..++.+..+
T Consensus 488 LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccc
Confidence 2334445667888888888877
No 427
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.88 E-value=1e+02 Score=27.67 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeeeccC
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLKF 373 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 373 (377)
+...-+..+.+.+++..|-.+-+++++.+..+ .. .++|.+++....++......++|
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~--~~-------------a~qArKil~~~e~~~tDa~~i~y 358 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP--EV-------------AEQARKILQACERNPTDAHEIDY 358 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC--HH-------------HHHHHHHHHHHCCS--BSS--S-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH--HH-------------HHHHHHHHHHHhcCCCCceecCC
Confidence 45556777889999999999999999865432 21 24577777776666554444443
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.65 E-value=1.1e+02 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHH
Q 042154 300 KAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~a~ 320 (377)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346777777777777766543
No 429
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.64 E-value=31 Score=19.67 Aligned_cols=31 Identities=3% Similarity=0.000 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 245 IEKQTKKALELVGEMRSKEINPDVFTFYALI 275 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 275 (377)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4555555666666666666555555555444
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.81 E-value=35 Score=20.03 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=19.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPL 338 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 338 (377)
+.-++.+.|++++|.+..+.+++. .|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 344677888888888888888774 4444433
No 431
>PRK09687 putative lyase; Provisional
Probab=58.51 E-value=1.1e+02 Score=25.68 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=122.9
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh----hHHHHHHHhchhhcCCCcCHHHHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF----DEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (377)
..+..+...|..+ +...+..+... ++...-...+.++.+.|+. +++...+..+..+ .++..+-...+.+
T Consensus 42 ~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~~a 114 (280)
T PRK09687 42 SSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAINA 114 (280)
T ss_pred HHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3555555555433 33333333332 3555555566666666653 3566666655322 4555555555555
Q ss_pred HHHcCCH-----HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 173 FVDKGSL-----DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247 (377)
Q Consensus 173 ~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (377)
+...+.. ..+...+...... ++..+-...+.++.+.++ ..+...+-.+.+. +|...-...+.++.+.+
T Consensus 115 LG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 115 TGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNK 187 (280)
T ss_pred HhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCC
Confidence 5544321 2233333333332 356666677777777776 4566666666653 34444444455555543
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 248 -QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 248 -~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
+...+...+..+.. .++..+-...+.++.+.|+. .|...+- ..+ .++ .....+.++...|+. +|...+.+
T Consensus 188 ~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 188 YDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 23456666666664 34666666777777787774 4444444 222 122 234567778888874 67777777
Q ss_pred HHhcCCCCChhhHHHHHHHHH
Q 042154 326 TFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~ 346 (377)
+.+. .||..+-...+.++.
T Consensus 260 l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 260 LLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHhh--CCChhHHHHHHHHHh
Confidence 7763 336666555555543
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.38 E-value=60 Score=25.08 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCc--cHHHHHHHHHH-----HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 108 FENARKVFDEMPGRNCEQ--TVLSFNALLGA-----CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
++.|+.+++.+.+.--.| -...-..++.. |.++|.+++|.+++++.. + .|+......-+....+..|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~---~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF---S-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh---c-CCCchhHHHHHHHHHHccc
No 433
>PRK14136 recX recombination regulator RecX; Provisional
Probab=58.35 E-value=1.1e+02 Score=25.81 Aligned_cols=73 Identities=10% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHh
Q 042154 74 RWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKD 152 (377)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (377)
+.+.++++.+.+.+...+..+...++.... +. ..-..+-.++.+.|+.++.+ ...+..+ ....++.|..++++
T Consensus 194 e~IE~VIerLke~gYLDDeRFAesyVr~R~--~k-kGp~rIrqELrQKGId~eLI--EqALeei-eEDE~E~A~~L~eK 266 (309)
T PRK14136 194 DSVEPLLDALEREGWLSDARFAESLVHRRA--SR-VGSARIVSELKRHAVGDALV--ESVGAQL-RETEFERAQAVWRK 266 (309)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHh--hc-hhHHHHHHHHHHcCCCHHHH--HHHHHhc-cHhHHHHHHHHHHH
Confidence 455667777777788777777776665432 22 23356667777888654332 2223322 22234555555543
No 434
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.68 E-value=1.6e+02 Score=27.12 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=52.0
Q ss_pred HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
...+.++......|+..+......+.. ...|+...|+.+++++...+. ...++..+... +
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~-------------l--- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKM-------------I--- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHH-------------h---
Confidence 344444444444466556655555543 345777777777776543210 11122211111 1
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042154 225 VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDV 268 (377)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 268 (377)
|+ .+...+..++.+....+....|+.++.++.+.|..|..
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 22 24455555666555544556777888888877765543
No 435
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.51 E-value=1.9e+02 Score=28.09 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=75.0
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
......+|..+.-.|++++|-...-.|.. -+..-|..-+..+...++......+ +..........+|..++.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLv 463 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLV 463 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHH
Confidence 44677788888888999988888888853 3455566666666666655443333 233333355677777776
Q ss_pred HHHccCCHHHHHHHHHhcCCC---------CCC-------ccHHHHHHHHHHHHhCCChhHHHHHHHhch
Q 042154 101 LYGKAAMFENARKVFDEMPGR---------NCE-------QTVLSFNALLGACVNSKKFDEVDGLFKDLP 154 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~---------~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (377)
.+.. .+...-.++..+.... ..+ -+...-..|+..|...+++..|+.++-...
T Consensus 464 e~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 464 EFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 6665 3333322222221100 000 112233457888999999999999987775
No 436
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=57.42 E-value=91 Score=24.36 Aligned_cols=55 Identities=5% Similarity=-0.057 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSERC--------------LVDQAPLQLVVDRLAKELRVEEAKELVE 359 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 359 (377)
+++-.|-+..++.+..++++.|.+..+ .+.-.+.+.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345556667777777777777765422 2222356677778888888888888887
No 437
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.84 E-value=1.1e+02 Score=24.97 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=37.6
Q ss_pred HcCCHHHHHHHHHHHHHC-C-----------CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKK-G-----------IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
..||..+|+.-++.-... | -.|.+.....++..+. .+++++|.+++.++-+.|..|. ...+.+.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 456666665555443211 1 1455666666665554 3567777777777777776554 334444444
Q ss_pred H
Q 042154 243 L 243 (377)
Q Consensus 243 ~ 243 (377)
+
T Consensus 282 ~ 282 (333)
T KOG0991|consen 282 V 282 (333)
T ss_pred H
Confidence 4
No 438
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.53 E-value=2e+02 Score=27.97 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHHhc
Q 042154 180 DSANTLLYEMEKKGIRL---DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS----------YNARLDGLAIE 246 (377)
Q Consensus 180 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~ 246 (377)
++-...+.+|...--.| ...+...++-.|....+++...++.+.+... ||..- |...+.--.+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 34445667777542233 3456677788888889999999999998874 43221 22233333456
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCHHHH-----H--HHHHHHHhcCCHHHHHHHHH-hcCCCCCHHH---HHHHHHHHHhc
Q 042154 247 KQTKKALELVGEMRSK--EINPDVFTF-----Y--ALIKGFVNEGNLEEAKRWYN-KSGCGMNKAI---FKLLVPFVCEK 313 (377)
Q Consensus 247 ~~~~~a~~~~~~~~~~--g~~p~~~~~-----~--~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~---~~~l~~~~~~~ 313 (377)
|+-++|+...-.+.+. .+.||.... - .+-+.|...+..+.|.+.|+ ...+.|+... +..|+.+-.+
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~- 335 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE- 335 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh-
Confidence 8889999888887765 345664322 1 12223445667888888888 5566665543 3334333222
Q ss_pred CChHHHHHH------HHHHHh-cCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHhhccCCceee
Q 042154 314 GDLDFAFNL------CKRTFS-ERCLVDQAPLQ---LVVDRLAKELRVEEAKELVELGKTNSYCRY 369 (377)
Q Consensus 314 g~~~~a~~~------~~~~~~-~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 369 (377)
.++...++ +..++. +|.--....|. ..+.+-.-+.++.+|.+.-+.|.+...|.+
T Consensus 336 -~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 336 -HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred -hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 12222222 111111 11111111111 123334457788888888888888776654
No 439
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.44 E-value=1.3e+02 Score=25.89 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHhCCChhHHHHHHHhchhhcC--CCcCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLG--IEPDLVSY--NTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
.-+.++.++|+++++++.++.. -.|+...| +.+.+.+...||..++.+.+++..+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344566666666666654321 23444433 3334555566666666666666655
No 440
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.42 E-value=70 Score=30.24 Aligned_cols=91 Identities=9% Similarity=0.119 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHhcCCCCCHHHHHHHHHH
Q 042154 238 ARLDGLAIEKQTKKALELVGEMRSK--EINPDVFTFYALIKGFVNEGNLE------EAKRWYNKSGCGMNKAIFKLLVPF 309 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~l~~~ 309 (377)
+++.+|...|++-.+..+++.+... |-+.-...+|..++.+.+.|.++ .|.+.++...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7889999999999999999998865 32333457888888888888654 455666655566788888888766
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 042154 310 VCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~ 328 (377)
-..--+-.-..-++.+.+.
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 5553333333444444443
No 441
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.05 E-value=66 Score=22.31 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHH
Q 042154 72 RFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFK 151 (377)
Q Consensus 72 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (377)
..++|..+.+.+...+. ..+.+.-+-+..+.+.|++++| +..-... ..||...|.+|. -.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~--~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCH--CYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS----GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccC--CCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 44555555555555433 1222222344445566666666 1111111 135555554443 345555555655555
Q ss_pred hch
Q 042154 152 DLP 154 (377)
Q Consensus 152 ~~~ 154 (377)
++.
T Consensus 94 rla 96 (116)
T PF09477_consen 94 RLA 96 (116)
T ss_dssp HHC
T ss_pred HHH
Confidence 553
No 442
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.88 E-value=81 Score=23.32 Aligned_cols=82 Identities=9% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHhHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKG-----IRLDLITFNTLLLGFYSNGR-FADAEKIWETMVNMNVRPNVRSYNA 238 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (377)
..+.++......++......+++.+.... -..+...|..++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45556666666666666666666653211 01244456666666655444 3345566666666666666666666
Q ss_pred HHHHHHhc
Q 042154 239 RLDGLAIE 246 (377)
Q Consensus 239 l~~~~~~~ 246 (377)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66666443
No 443
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.78 E-value=1.2e+02 Score=25.41 Aligned_cols=118 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCC--------CCCCHHHHHHHHHH-HHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHH
Q 042154 250 KKALELVGEMRSKE--------INPDVFTFYALIKG-FVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 250 ~~a~~~~~~~~~~g--------~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a 319 (377)
+....+|+-+-+.| +..|..-++.|+.- -.+...++++++-.+ ..|-.--...+..+..-|++.++.+.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng 134 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNG 134 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHhc----CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 320 FNLCKRTFSE----RCLVDQA-PLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 320 ~~~~~~~~~~----~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
.+...+..+. |.+.|.. +--.|.-.|....-+++-.+..+.+.++|..
T Consensus 135 ~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 135 FEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
No 444
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.52 E-value=93 Score=25.45 Aligned_cols=90 Identities=9% Similarity=-0.131 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCH
Q 042154 240 LDGLAIEKQTKKALELVGEMRSK------EINPDVF-----------TFYALIKGFVNEGNLEEAKRWYN--KSGCGMNK 300 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~------g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~ 300 (377)
.+-+.+.|++.+|..-|.+.+.. .-+|... .+..+-+++...|++-++++.-. -...+.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34466788888888877765321 1122211 12233334445566666665555 22223355
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 301 AIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
..|---.++....=+..+|..-|...++.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 55555555666666667777777776664
No 445
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.41 E-value=36 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=27.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444555556666666666666555666665666666666543
No 446
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=54.47 E-value=1.5e+02 Score=26.07 Aligned_cols=194 Identities=10% Similarity=0.101 Sum_probs=95.9
Q ss_pred cccHHHHHHHHHhcccC----CCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHH----cc
Q 042154 34 ENNLKRLVDKFKKSSDL----GRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYG----KA 105 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 105 (377)
.++++.|++-+-...+. .....+...+..+++.|...++|+..-+.+.-+.+.........- .++.-+. ..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~-~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQ-SMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhccCC
Confidence 66777776665444321 123445566778888888888888777666554433222111111 1222111 11
Q ss_pred CCHHHHHHHHHhcCC--CC-C--Cc-cHHHHHHHHHHHHhCCChhHHHHHHHhchhh-cCCCcCHH---HHHHHHHHHHH
Q 042154 106 AMFENARKVFDEMPG--RN-C--EQ-TVLSFNALLGACVNSKKFDEVDGLFKDLPHK-LGIEPDLV---SYNTIIKAFVD 175 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~--~~-~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~---~~~~l~~~~~~ 175 (377)
.+.+--+.+.+.+.. .| + .. .+..-..|...+-..|++++|.+++.+..-. +|.---.. ..---++.|..
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222222333222211 11 0 00 1112233455566777777777777665321 11111111 11112456677
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 176 KGSLDSANTLLYEMEKKGI-RLD-----LITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
.+|+-.|.-+-.++...-+ .|+ ..-|+.++......+.+=.+-+.|+..-..|
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 7777777666655553322 222 2346777777777777777777777766543
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.09 E-value=1.4e+02 Score=25.41 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 254 ELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
++|+.|...++.|.-..+..+.-.+.+.=.+...+.+|+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWD 302 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWD 302 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHH
Confidence 344444444444544444444444444444444444444
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.85 E-value=72 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=14.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHhcCC
Q 042154 95 TARLIALYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 120 (377)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 33555556666666666666555544
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.79 E-value=1.6e+02 Score=28.16 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 203 TLLLGFYSNGRFADAEKIWETMVNMN--VRPNVRSYNARLDGLAIEKQTK------KALELVGEMRSKEINPDVFTFYAL 274 (377)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~g~~p~~~~~~~l 274 (377)
+|+.+|..+|++..+.++++.....+ -+.=...||..++...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 79999999999999999999988543 2233467888899999999764 3444444443 45577888877
Q ss_pred HHHHH
Q 042154 275 IKGFV 279 (377)
Q Consensus 275 ~~~~~ 279 (377)
.++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 76544
No 450
>PRK09462 fur ferric uptake regulator; Provisional
Probab=53.67 E-value=86 Score=23.20 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042154 316 LDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL 349 (377)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (377)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444444444444434444444443
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.66 E-value=78 Score=26.77 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----------CCCHHH
Q 042154 147 DGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS----------NGRFAD 216 (377)
Q Consensus 147 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 216 (377)
.++++.+..+ ++.|.-.++..+.-.+.+.=.+.+++.+++.+..... -|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3566666544 8888888777777777777788888888888876422 25555555543 478888
Q ss_pred HHHHHHH
Q 042154 217 AEKIWET 223 (377)
Q Consensus 217 a~~~~~~ 223 (377)
..++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 7777654
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.60 E-value=18 Score=26.15 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLG 207 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (377)
+.|.-..|..+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 445566677777777777777664 5555543
No 453
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.41 E-value=1.4e+02 Score=25.26 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ 248 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (377)
++....+.++.....+.+..+. ....-...++.+...|++..|++++.+..+.- -+...|+.+=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHH---hHH
Confidence 3344445555555555555443 22334445666667778888877777665420 000111111111 011
Q ss_pred HHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 249 TKKALELVGEMRSK-----EINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 249 ~~~a~~~~~~~~~~-----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+++.....+++.+. -...|+..|..+..+|.-.|+...+.+-+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 22222222222211 014577888888888888887766654444
No 454
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.30 E-value=32 Score=24.29 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 456777777777888999999999888888888777778888777743
No 455
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.28 E-value=73 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=14.2
Q ss_pred HHHHHhcCCHHHHHHHHH-hcCCCCCHHHH
Q 042154 275 IKGFVNEGNLEEAKRWYN-KSGCGMNKAIF 303 (377)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 303 (377)
.-.|.+.|+.+.|.+-|+ +...-|...+|
T Consensus 79 GlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 79 GLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 334555555555555555 33344444433
No 456
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.19 E-value=1.3e+02 Score=24.57 Aligned_cols=118 Identities=13% Similarity=-0.018 Sum_probs=76.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCC
Q 042154 171 KAFVDKGSLDSANTLLYEMEKKGIRLDL-ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYN-ARLDGLAIEKQ 248 (377)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 248 (377)
+-|.....++.|...|.+.... .|+. .-|+.-+-++.+..+++.+..--...++. .||.+--. .+..+......
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc
Confidence 3455566788899988777765 4555 55667777888888888887766666654 46654433 34456667788
Q ss_pred HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 249 TKKALELVGEMRSK----EINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 249 ~~~a~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
++.|+..+.+.... .++|.......|..+--..=...+..++.+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 99999988887432 344445566666665444444555555555
No 457
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.85 E-value=2.5e+02 Score=27.72 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=21.3
Q ss_pred HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
+..+.++++..+.++..+......+.+ ...|+...++.++++..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 344444444333344444444444433 23566666666655544
No 458
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.55 E-value=2e+02 Score=26.65 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=52.1
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------CHHhHHHHHHHHHcC
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRL------------DLITFNTLLLGFYSN 211 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~ 211 (377)
++...++....++.|+..+......++.. ..|++..+...++.+...+-.. .......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 44555555554444766666666665543 3578888887777765443111 122233455555 44
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 042154 212 GRFADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~ 232 (377)
++.++|+.+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 788889999998888875443
No 459
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.34 E-value=1.2e+02 Score=23.79 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
-++..+-.....|++++|..-++++.+
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444566667776666665543
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.08 E-value=3e+02 Score=28.42 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEIN---PD-VFTFYALIKGFVNEGNLEEAKRWYNKS-GCGMNKAIFKLLVPF 309 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~---p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 309 (377)
-|...++.+-+.+-.+.+..+-...++. .+ |. ..+++.+.......|.+-+|...+-.. ...........++..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3666777777778888877777666654 22 22 245667777777777777777665411 111112345556666
Q ss_pred HHhcCChHHH------------HH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042154 310 VCEKGDLDFA------------FN-LCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 310 ~~~~g~~~~a------------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
++.+|.++.- .. +++..-+...-....-|..|..-+...+++.+|-.+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 7777765432 22 222222222222233455555555667777765543
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=1.8e+02 Score=25.81 Aligned_cols=133 Identities=11% Similarity=-0.034 Sum_probs=76.0
Q ss_pred CCchHHHHHHHHh--hhcccHHHHHHHHHhcccCCCCccchhhHHHH--------HHHHHhcCChHHHHHHHHHhhhh--
Q 042154 19 TGPKFIGSVIRGI--YKENNLKRLVDKFKKSSDLGRFRTNTGIYTGT--------VQRLANAKRFRWIEEILEHQKQY-- 86 (377)
Q Consensus 19 ~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~a~~~~~~~~~~-- 86 (377)
+....|-.++-.+ ..+.++.+|..+-+.....- .--+..++..+ -..+-..|+.......+......
T Consensus 122 ~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt 200 (493)
T KOG2581|consen 122 AEIEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT 200 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 3455666655544 34577888888776654321 12233444332 23344556666665555544332
Q ss_pred ---cCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHH-------HHHHHHhCCChhHHHHHHHhchhh
Q 042154 87 ---KDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA-------LLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 87 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
.......+.|.|++.|...+.++.|..+..+..- |+...-+. +.....-..++..|.+.|-+...+
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~----pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY----PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC----ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 2233445667888899999999999888877653 22221111 222334466788888888777654
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.40 E-value=92 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLY 187 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~ 187 (377)
.|......+...|++++|.++|+
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444444444444443
No 463
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.32 E-value=31 Score=16.81 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPLQLVVD 343 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (377)
|+.+.|..+|++++.... -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 567788888888887533 35556655443
No 464
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.01 E-value=94 Score=29.31 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHH-hcCCCC-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 042154 279 VNEGNLEEAKRWYN-KSGCGM-N------KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 279 ~~~~~~~~a~~~~~-~~~~~~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
.+..++..+.++|. ....-| | ......+--+|....+.+.|.++++++.+.+.+ ++-+--.+..+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcc
Confidence 35567788888887 111111 1 234556667788888999999999998875433 44444456667778888
Q ss_pred HHHHHHHHHhhccC
Q 042154 351 VEEAKELVELGKTN 364 (377)
Q Consensus 351 ~~~A~~~~~~~~~~ 364 (377)
-++|...+......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 88888877766543
No 465
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.86 E-value=85 Score=21.79 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
..++|..+.+-+...+.. ...+--+-+..+.+.|++++|+ ..- .....||...|.++.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345555555555544321 2222223333445555665551 111 1112355555544332 24555555555555
Q ss_pred HHHhCC
Q 042154 258 EMRSKE 263 (377)
Q Consensus 258 ~~~~~g 263 (377)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 466
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.09 E-value=1.5e+02 Score=24.23 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=10.5
Q ss_pred HHhcCChHHHHHHHHHh
Q 042154 67 LANAKRFRWIEEILEHQ 83 (377)
Q Consensus 67 ~~~~~~~~~a~~~~~~~ 83 (377)
+.-.+++++|.+++.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 34455677777777654
No 467
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.50 E-value=1e+02 Score=27.63 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKE 263 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g 263 (377)
-+..+.+.+++..|-.+-+++++.+
T Consensus 306 AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 306 AMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp HHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcC
Confidence 3444456677777777777776654
No 468
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.07 E-value=1.8e+02 Score=28.79 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=59.5
Q ss_pred HccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHH
Q 042154 103 GKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSA 182 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (377)
...|+++.|++.-..+- +..+|..|.......|+.+-|+..|++... |..+--.|.-.|+.++.
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHH
Confidence 34555555554433321 345555565555556665555555554421 22332333444555555
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
.++...+... -|..+. ... ..-.|+.++-.++++.. |..| ..|. .-..+|.-++|.++.++....
T Consensus 718 ~Km~~iae~r---~D~~~~--~qn-alYl~dv~ervkIl~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATGQ--FQN-ALYLGDVKERVKILENG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhh---hhhHHH--HHH-HHHhccHHHHHHHHHhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 4444444322 111110 111 11134555554444332 2111 1221 113467788899998888764
No 469
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.65 E-value=24 Score=22.68 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=18.5
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCc
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFR 54 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 54 (377)
++++.+.+..-.++|+++++.+.+.|.+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~ 64 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEIT 64 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCC
Confidence 34555555666677777777777776443
No 470
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.91 E-value=2.1e+02 Score=26.26 Aligned_cols=109 Identities=14% Similarity=0.007 Sum_probs=68.9
Q ss_pred HHHHccCCHHHHHHHHHhcC---CCCCCcc-----HHHHHHHHHHHHhCCChhHHHHHHHhchh------hcCCCcCH--
Q 042154 100 ALYGKAAMFENARKVFDEMP---GRNCEQT-----VLSFNALLGACVNSKKFDEVDGLFKDLPH------KLGIEPDL-- 163 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~p~~-- 163 (377)
..+.-.|++..|.+++...- ..|...+ -..||.|.-.+.+.+.+.-+..+|.+..+ ..|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 44566789999998876642 2232112 22345565556666766666666655543 12544432
Q ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 042154 164 ---------VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS 210 (377)
Q Consensus 164 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (377)
.+||. .-.+...|++-.|.+.|.+.... +..++..|-.|..+|.-
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23333 33567889999999999988865 45588889988888753
No 471
>PRK09857 putative transposase; Provisional
Probab=46.78 E-value=1.8e+02 Score=24.64 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 267 (377)
+..++....+.++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667666667777666654 222333444555666666766677778888887776544
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.50 E-value=1.3e+02 Score=22.94 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=28.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 225 VNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
...|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344544443222 333333344445556666666666655555555444555555554
No 473
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.42 E-value=2.3e+02 Score=25.66 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 042154 271 FYALIKGFVNEGNLEEAKRWYNKSGCGM--NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 331 (377)
...|+.-|...|+..+|.+++++.|++. ....+.+++.+.-+.|+-+..+.+++..-+.|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3567888888999999999999666543 445788888888888888888888877766553
No 474
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.35 E-value=2.5e+02 Score=26.13 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccC
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAA 106 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (377)
++.-|.+.+++++|+.++..|.=...-.---...+.+++.+.+..--++.+..++.+...-..|..........-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG 158 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (377)
=.+-|.+.|..|...+ .|..-.......|+.|--+++....... |
T Consensus 493 V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~-g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDK-G 537 (545)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhc-c
No 475
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.19 E-value=1.6e+02 Score=23.82 Aligned_cols=169 Identities=12% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHH
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFD 116 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 116 (377)
......+++.+...+ .++..-...+...+...+.... ....++....-..|.....-+-.-.+...+++++|.+.+
T Consensus 26 ~~~L~~Ll~~i~~~~--~~~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L- 101 (226)
T PF13934_consen 26 DNDLRALLDLILSSN--VSLLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL- 101 (226)
T ss_pred HHHHHHHHHHHhcCC--cCHHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh-
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 042154 117 EMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRL 196 (377)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 196 (377)
............++.++...|+.+.|+.+++... ....+......++.. ..++.+.+|..+-+...+. .
T Consensus 102 ----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~ 170 (226)
T PF13934_consen 102 ----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE---L 170 (226)
T ss_pred ----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---h
Q ss_pred CHHhHHHHHHHHH----cCCCHHHHHHH
Q 042154 197 DLITFNTLLLGFY----SNGRFADAEKI 220 (377)
Q Consensus 197 ~~~~~~~l~~~~~----~~~~~~~a~~~ 220 (377)
....+..++..+. +.+..++...+
T Consensus 171 ~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 171 RRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 476
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.98 E-value=1.1e+02 Score=23.91 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHccCCHHHHHHHHHhc
Q 042154 102 YGKAAMFENARKVFDEM 118 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~ 118 (377)
....|++++|..-++++
T Consensus 39 ~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 39 LLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 34455666666555554
No 477
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.86 E-value=3.3e+02 Score=28.39 Aligned_cols=154 Identities=14% Similarity=0.017 Sum_probs=91.1
Q ss_pred HHHHHcCCHHHHHH------HHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH-------HhCCCCCCHHHHH
Q 042154 171 KAFVDKGSLDSANT------LLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETM-------VNMNVRPNVRSYN 237 (377)
Q Consensus 171 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~ 237 (377)
......|.+.++.+ ++......-.+.....|..+...+.+.|+.++|...-... ....-.-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34445566666666 4543222223445667888888899999999888765433 2222222334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------h-cCC--CCCH
Q 042154 238 ARLDGLAIEKQTKKALELVGEMRSK-----E--INPDVFTFYALIKGFVNEGNLEEAKRWYN-------K-SGC--GMNK 300 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~-----g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-------~-~~~--~~~~ 300 (377)
.+...+...++...|...+.+.... | .+|...+++.+-..+...++++.|.++++ . .|. -.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 5655555666777777777666543 2 23334445555545555678888888888 1 111 2344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 042154 301 AIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
.++..+.+.+...+++..|....+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Confidence 567777777777777777665543
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.59 E-value=87 Score=20.67 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 184 TLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
++|+-....|+..|..+|..+++.+.-+--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5566666666666666666666665555555556666655553
No 479
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.58 E-value=2.8e+02 Score=26.56 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=45.7
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCHHhHHHHHHHHHc
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR-------------LDLITFNTLLLGFYS 210 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~ 210 (377)
++..+.+.....+.|+..+......++. ...|+...++.+++++...+.. .+......+++++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 3444555544444466666666655554 3457777777777665433210 122223334444443
Q ss_pred CCCHHHHHHHHHHHHhCCCCC
Q 042154 211 NGRFADAEKIWETMVNMNVRP 231 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~ 231 (377)
|+...++++++++.+.|..+
T Consensus 264 -~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCH
Confidence 56777777777777666443
No 480
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=45.58 E-value=2.6e+02 Score=26.05 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=50.6
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------C----------CCCHHhHHHHHHH
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKG------I----------RLDLITFNTLLLG 207 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~l~~~ 207 (377)
++...++....++.|+..+......++.. ..|++..|...++++...+ + ..+......++++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 44555555555555666666666555543 4578888888887764321 1 1122223334444
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC
Q 042154 208 FYSNGRFADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (377)
.. .|+..+|+.+++++...|..|.
T Consensus 268 i~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 268 II-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 44 3788888888888888876544
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.47 E-value=2.1e+02 Score=25.03 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=37.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHhhccCCc
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVV----DRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
+.+-++..-|.+....+.++++.--..||.+|- ....+.+..++|.+..-+|.+.|-
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~ 347 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGE 347 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCc
Confidence 445566777777777776666554555666553 233456778888888888877763
No 482
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.18 E-value=1.9e+02 Score=24.56 Aligned_cols=66 Identities=8% Similarity=0.073 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHH---hcCCCCCHH----HHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 280 NEGNLEEAKRWYN---KSGCGMNKA----IFKLLVPFVCEKGDLDFAFNL-CKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 280 ~~~~~~~a~~~~~---~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
+...+++.....+ +..--|+.. .|..++++ .+|.+-.++ -+++++ ...+|.-|+.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChH
Confidence 3445555555555 333356554 46655543 333322222 122222 234677888899999987
Q ss_pred HHH
Q 042154 352 EEA 354 (377)
Q Consensus 352 ~~A 354 (377)
+-.
T Consensus 338 EL~ 340 (412)
T KOG2297|consen 338 ELE 340 (412)
T ss_pred HHH
Confidence 754
No 483
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.04 E-value=2.6e+02 Score=26.02 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCHHhHHHHHHHHHc
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI-------------RLDLITFNTLLLGFYS 210 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~ 210 (377)
++....+....++.|+..+......++.. ..|+...|..+++++...|- .++......+++++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 33444444444444666666666655544 35888888888877654431 112222333444444
Q ss_pred CCCHHHHHHHHHHHHhCCCCCC
Q 042154 211 NGRFADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~ 232 (377)
.|+.+.+..+++++...|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3778888888888888886554
No 484
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.72 E-value=3.6e+02 Score=27.50 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHH
Q 042154 233 VRSYNARLDGLAIEK--QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPF 309 (377)
Q Consensus 233 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~ 309 (377)
......++.+|++.+ ++++|+.+..++.+. +.......+...+-. -.+-++|+ ..|. =|.. -.++-+
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~fL---vDvn~Ly~~ALG~-YDl~--Lal~VA 881 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCFL---VDVNKLYDVALGT-YDLE--LALMVA 881 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHheee---ccHHHHHHHHhhh-cCHH--HHHHHH
Confidence 355667888898888 888999999998875 111111111111111 11122222 2220 0110 123334
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELG 361 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 361 (377)
-..+.|+.|=+-+++++.+. +|+..-| -|+. ..+++++|++-+.++
T Consensus 882 q~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID~--hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKL--PPLYRRY--KIDD--HLKRYEKALRHLSAC 927 (928)
T ss_pred HHhccChHHHHHHHHHHHhC--Chhheee--eHhh--hhCCHHHHHHHHHhh
Confidence 44566777777777777663 3332222 2332 367888888776553
No 485
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=44.49 E-value=1.3e+02 Score=22.44 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCc
Q 042154 78 EILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQ 125 (377)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 125 (377)
++++.+...+...+..+....+..... .-..-..+-.++...|+.+
T Consensus 47 ~vl~~l~~~~~ldD~~~a~~~~~~~~~--~~~g~~~I~~~L~~kGi~~ 92 (157)
T PRK00117 47 AVLDRLKEEGLLDDERFAESFVRSRAR--KGYGPRRIRQELRQKGVDR 92 (157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHh--CCchHHHHHHHHHHcCCCH
Confidence 344444444444444444444444422 1223445566666777543
No 486
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.98 E-value=3.2e+02 Score=26.66 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=27.5
Q ss_pred hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 143 FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
.++....+....++.|+..+......+++.. .|+...++.+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3445555555555546666666665555533 4777777777766554
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.36 E-value=69 Score=22.30 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555677777777766655666666566666666654
No 488
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.34 E-value=2.4e+02 Score=25.12 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 042154 201 FNTLLLGFYSNGRFADAEKIWET 223 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~ 223 (377)
+.-+.+.|..+|+++.|++.|.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhh
Confidence 34444455555555555555544
No 489
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=42.61 E-value=1.3e+02 Score=21.85 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=12.1
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRN 122 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~ 122 (377)
++-.+...|+++.|+++.+-.++.|
T Consensus 54 ~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 54 VMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHcC
Confidence 3444445555555555555544444
No 490
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.57 E-value=1.4e+02 Score=22.10 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 224 MVNMNVRPNVRSYNARLDGLAIE-KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44555554432 22334444443 3466677777777776655566665556666666654
No 491
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=42.45 E-value=50 Score=17.02 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHH
Q 042154 315 DLDFAFNLCKRTFSERCLVDQAPLQL 340 (377)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (377)
.++.|..+|++.+.. .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 467888888888874 577776643
No 492
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.40 E-value=2.5e+02 Score=25.03 Aligned_cols=25 Identities=0% Similarity=-0.098 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHh
Q 042154 59 IYTGTVQRLANAKRFRWIEEILEHQ 83 (377)
Q Consensus 59 ~~~~l~~~~~~~~~~~~a~~~~~~~ 83 (377)
.+.-+.+.|...|+++.|.+.|.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhh
Confidence 3444444555555555555555443
No 493
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.29 E-value=63 Score=26.07 Aligned_cols=54 Identities=17% Similarity=-0.013 Sum_probs=25.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 311 CEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 311 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
.+.++.+.|.+++.++...-.. ....|..+...-.++|+++.|.+.|++..+.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3445555555555555443211 33344445555555555555555555544443
No 494
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.93 E-value=72 Score=22.25 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=12.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhcC
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYKD 88 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (377)
++.+.+....++|+++++.+.++|.
T Consensus 68 iD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 4444445555555555555555543
No 495
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=41.64 E-value=2.8e+02 Score=25.48 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=125.8
Q ss_pred HHHHHHhcccCCCCccchhhHHHHHHHHHhc------CChHHHHHHHHHhhhhcC--CCccchhHHHHHHHHccCCH-HH
Q 042154 40 LVDKFKKSSDLGRFRTNTGIYTGTVQRLANA------KRFRWIEEILEHQKQYKD--ISKEGFTARLIALYGKAAMF-EN 110 (377)
Q Consensus 40 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~ 110 (377)
...+|+...+. -|+...|+..|..|... ......+.+++.....+. ......|..+...+...+.. +-
T Consensus 301 ~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 301 CCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 33666666544 24555666666665442 234555566665554432 12223333444444444433 33
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhCC-ChhH-HHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC-HHHH--HHH
Q 042154 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSK-KFDE-VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS-LDSA--NTL 185 (377)
Q Consensus 111 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a--~~~ 185 (377)
|..+..+.. ..|...|..-+....+.. +++- -..++..+... -..+-...|+... .++ ++.. ..+
T Consensus 378 a~~l~~e~f----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~-~~s~~~~~w~s~~-----~~dsl~~~~~~~I 447 (568)
T KOG2396|consen 378 AVKLTTELF----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ-VCSELLISWASAS-----EGDSLQEDTLDLI 447 (568)
T ss_pred HHHhhHHHh----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-hcchhHHHHHHHh-----hccchhHHHHHHH
Confidence 444443333 346666666555555332 3222 12223333221 2223333444433 222 2211 122
Q ss_pred HHHHHHCCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 042154 186 LYEMEKKGIRLDLIT-FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI--EKQTKKALELVGEMRSK 262 (377)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 262 (377)
+....+.+ .++..+ -+.++..+.+.|-..+|..++..+.... +|+...|..++..-.. .-+..-+..+|+.|...
T Consensus 448 i~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 448 ISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 23333332 234443 4567788888888999999999988764 5777888877754322 22367778888888776
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 263 -EINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 263 -g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
| .|+..|...+.-=...|..+.+-.++.
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHH
Confidence 5 566777766666667787777766665
No 496
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=41.51 E-value=2e+02 Score=23.79 Aligned_cols=162 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT-----KKALELVGEMRSKEINPDVFTFYALI 275 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~g~~p~~~~~~~l~ 275 (377)
...++..+.+.+....|..+.+.+... +-=......++......... ......+....+ .--....|..++
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~~~l~Iv 160 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFPEYLEIV 160 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCcchHHHH
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcC
Q 042154 276 KGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD------QAPLQLVVDRLAKEL 349 (377)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 349 (377)
-.|.+.-+...-..+|...| .|.. +...|.+.|+++.|-.++--+...+.... ......++......|
T Consensus 161 v~C~RKtE~~~W~~LF~~lg-~P~d-----Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 161 VNCARKTEVRYWPYLFDYLG-SPRD-----LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHhhHHHHHHHHHHhcC-CHHH-----HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Q ss_pred CHHHHHHHHHhhccCCceeeecc
Q 042154 350 RVEEAKELVELGKTNSYCRYNLK 372 (377)
Q Consensus 350 ~~~~A~~~~~~~~~~~~~~~~~~ 372 (377)
+|+-+.++.+-+..-+.....+.
T Consensus 235 ~w~Lc~eL~RFL~~ld~~~~~l~ 257 (258)
T PF07064_consen 235 DWDLCFELVRFLKALDPEGNTLP 257 (258)
T ss_pred cHHHHHHHHHHHHHhCcccCcCC
No 497
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.93 E-value=87 Score=19.36 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042154 297 GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKE 348 (377)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (377)
.|....++.++..+++..-.+.++..+.++.+.|.- +..+|-.-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 456677888888888888899999999999988753 667776666666553
No 498
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=40.87 E-value=81 Score=22.14 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=9.4
Q ss_pred HHHHHHHhchhhcCCCc
Q 042154 145 EVDGLFKDLPHKLGIEP 161 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p 161 (377)
++.+.+.++..+.|+.|
T Consensus 7 ~~~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITP 23 (113)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 44555555555555555
No 499
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.52 E-value=2e+02 Score=23.47 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------------hcCCCCCHHHHHHHHHHHHhcCChHH
Q 042154 254 ELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---------------KSGCGMNKAIFKLLVPFVCEKGDLDF 318 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (377)
++.+-....+++-+.....+++ +...|++.+|+.-++ +.--.|.+.....++..| ..+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHH
Confidence 3333333334443333333332 334566666665555 111245555555555443 3456777
Q ss_pred HHHHHHHHHhcCCCC
Q 042154 319 AFNLCKRTFSERCLV 333 (377)
Q Consensus 319 a~~~~~~~~~~~~~~ 333 (377)
|.+++.++-+.|+.|
T Consensus 257 A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 257 ALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHHHHcCCCH
Confidence 777777777777664
No 500
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=40.50 E-value=3.1e+02 Score=25.54 Aligned_cols=23 Identities=4% Similarity=0.104 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 042154 269 FTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
.+|..++..+...++..-...+-
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (507)
T PRK06645 399 FEIVDFLEYLYKNNEIDIYYFLL 421 (507)
T ss_pred cCHHHHHHHHHhcccHHHHHHHH
Confidence 34555555555555544444333
Done!